Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309480 | XP_003593057.1 | 95.941 | 813 | 28 | 1 | 1 | 813 | 1 | 808 | 0.0 | 1608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189160 | Msa0309480 | 0.862797 | 3.928055e-64 | -8.615850e-47 |
| Msa0270740 | Msa0309480 | 0.975087 | 2.588367e-139 | -8.615850e-47 |
| Msa0309480 | Msa0376340 | 0.800020 | 1.753268e-48 | -8.615850e-47 |
| Msa0309480 | Msa0516160 | 0.805236 | 1.471296e-49 | -8.615850e-47 |
| Msa0309480 | Msa1452760 | 0.840568 | 8.040858e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309480 | MtrunA17_Chr2g0278061 | 95.941 | 813 | 28 | 1 | 1 | 813 | 1 | 808 | 0.0 | 1608 |
| Msa0309480 | MtrunA17_Chr6g0484301 | 33.281 | 634 | 366 | 16 | 158 | 778 | 92 | 681 | 3.32e-83 | 280 |
| Msa0309480 | MtrunA17_Chr1g0212431 | 28.670 | 722 | 450 | 14 | 102 | 789 | 43 | 733 | 5.75e-79 | 270 |
| Msa0309480 | MtrunA17_Chr7g0253851 | 25.339 | 663 | 412 | 17 | 158 | 781 | 46 | 664 | 2.85e-44 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309480 | AT1G71240.2 | 59.171 | 796 | 305 | 8 | 22 | 806 | 37 | 823 | 0.0 | 934 |
| Msa0309480 | AT1G71240.1 | 59.097 | 797 | 305 | 9 | 22 | 806 | 37 | 824 | 0.0 | 930 |
| Msa0309480 | AT1G71240.3 | 58.226 | 620 | 239 | 8 | 22 | 630 | 37 | 647 | 0.0 | 710 |
| Msa0309480 | AT3G18350.3 | 30.861 | 674 | 414 | 16 | 120 | 781 | 49 | 682 | 2.58e-83 | 281 |
| Msa0309480 | AT3G18350.1 | 30.861 | 674 | 414 | 16 | 120 | 781 | 49 | 682 | 2.58e-83 | 281 |
| Msa0309480 | AT3G18350.2 | 30.861 | 674 | 414 | 16 | 120 | 781 | 49 | 682 | 2.58e-83 | 281 |
| Msa0309480 | AT1G48840.1 | 29.762 | 672 | 417 | 12 | 120 | 778 | 49 | 678 | 3.16e-78 | 267 |
| Msa0309480 | AT5G23390.1 | 29.046 | 723 | 421 | 17 | 116 | 791 | 53 | 730 | 1.00e-72 | 253 |
| Msa0309480 | AT2G21720.1 | 24.545 | 660 | 423 | 14 | 158 | 780 | 107 | 728 | 5.72e-48 | 182 |
| Msa0309480 | AT2G21720.2 | 24.434 | 663 | 423 | 14 | 158 | 780 | 107 | 731 | 1.42e-47 | 181 |
Find 168 sgRNAs with CRISPR-Local
Find 398 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTGACTGTTGGGTTTCT+TGG | 0.043925 | 2_4:-3991172 | Msa0309480:CDS |
| AGGGGTATTATTGATTATTT+AGG | 0.148836 | 2_4:-3989941 | Msa0309480:three_prime_UTR |
| TTACCCTTGCTTTGGTTTCC+TGG | 0.185007 | 2_4:+3990222 | None:intergenic |
| AAGGCAAAAGTTGGGCCTTT+AGG | 0.222763 | 2_4:-3992387 | Msa0309480:CDS |
| TCAATACATTCAATCTTTCT+TGG | 0.227087 | 2_4:+3994624 | None:intergenic |
| TTCTAGGGAGCTGGCTTATT+GGG | 0.234930 | 2_4:-3992462 | Msa0309480:intron |
| AACTTTAGCTGTTAACTATT+GGG | 0.250174 | 2_4:-3991767 | Msa0309480:CDS |
| TCTGCTGTTTCTATTTCTTC+TGG | 0.255306 | 2_4:-3992348 | Msa0309480:CDS |
| TGCAGAGAAGGCTTCTTTAC+AGG | 0.257249 | 2_4:-3993440 | Msa0309480:intron |
| AAACTTTAGCTGTTAACTAT+TGG | 0.257963 | 2_4:-3991768 | Msa0309480:CDS |
| GTTCTAGGGAGCTGGCTTAT+TGG | 0.295279 | 2_4:-3992463 | Msa0309480:intron |
| CACAAGTTCACGCATGAGTA+TGG | 0.303668 | 2_4:-3991976 | Msa0309480:CDS |
| ATATAGTGATGCTCGTAATT+TGG | 0.314944 | 2_4:-3993841 | Msa0309480:CDS |
| AGGCAAAAGTTGGGCCTTTA+GGG | 0.316742 | 2_4:-3992386 | Msa0309480:CDS |
| GAGTCTAGCAATACCATTAA+TGG | 0.319435 | 2_4:+3991888 | None:intergenic |
| GCAACGAGCAGTGCCATTAA+TGG | 0.329071 | 2_4:-3991901 | Msa0309480:CDS |
| AATAGTTAACAGCTAAAGTT+TGG | 0.330311 | 2_4:+3991770 | None:intergenic |
| GGGGTATTATTGATTATTTA+GGG | 0.335828 | 2_4:-3989940 | Msa0309480:three_prime_UTR |
| GTGAGATGAGGAGGGATGTT+TGG | 0.340477 | 2_4:-3992029 | Msa0309480:CDS |
| GCATCACTATATACAGCTTC+TGG | 0.341679 | 2_4:+3993852 | None:intergenic |
| CATTCATACTTAGGTCGAAT+TGG | 0.347539 | 2_4:-3992080 | Msa0309480:intron |
| TGGGGAAGTCAACTGGTTAC+AGG | 0.349503 | 2_4:-3991748 | Msa0309480:CDS |
| GTAGAGTACGTCGAGAAAAT+AGG | 0.356259 | 2_4:-3992820 | Msa0309480:intron |
| AGAAGCCTTCTCTGCATTGC+TGG | 0.368515 | 2_4:+3993447 | None:intergenic |
| AACAAGCAAACAAAAGTATC+AGG | 0.371038 | 2_4:-3991494 | Msa0309480:CDS |
| TTGCGAGCCTCGAAAACATT+AGG | 0.375872 | 2_4:+3991937 | None:intergenic |
| ATCCGGACTTACCCTTGCTT+TGG | 0.379147 | 2_4:+3990214 | None:intergenic |
| TTTGTTCTCAAGTTCCTTCA+AGG | 0.390824 | 2_4:+3990254 | None:intergenic |
| TCTGAAGTGGGAGAATAATA+TGG | 0.392011 | 2_4:-3992720 | Msa0309480:CDS |
| GTGGATGAAATCTCCATCTT+GGG | 0.392487 | 2_4:-3991623 | Msa0309480:CDS |
| GGTGCTGGAATTTATTGACT+TGG | 0.398798 | 2_4:-3992055 | Msa0309480:CDS |
| AGGAGCCACACCTGACTGTT+GGG | 0.401607 | 2_4:-3991180 | Msa0309480:CDS |
| CTGCTCTTTCAGTGAGCGTT+AGG | 0.402602 | 2_4:+3991521 | None:intergenic |
| TCTGTAAGCAACCCTGAAAA+TGG | 0.404792 | 2_4:+3990184 | None:intergenic |
| TATTCATAACAATGCTTGCC+TGG | 0.405685 | 2_4:-3993495 | Msa0309480:CDS |
| TTAAGGAGCAAGGCCGCCTT+GGG | 0.405878 | 2_4:-3990792 | Msa0309480:CDS |
| AGATTGGATCTTACATATGA+TGG | 0.406083 | 2_4:-3992423 | Msa0309480:CDS |
| CTTAAGGAGCAAGGCCGCCT+TGG | 0.406837 | 2_4:-3990793 | Msa0309480:CDS |
| CAAGGCGGCCTTGCTCCTTA+AGG | 0.408441 | 2_4:+3990794 | None:intergenic |
| CTGTTGGAATGCTGACAATC+AGG | 0.413827 | 2_4:-3990819 | Msa0309480:CDS |
| TAGATCAGAAGTTTCCTTGA+AGG | 0.419759 | 2_4:-3990268 | Msa0309480:CDS |
| TTATTCTCCCACTTCAGAAC+AGG | 0.421954 | 2_4:+3992725 | None:intergenic |
| TTGCTGTGCTGATGTTAACT+TGG | 0.422067 | 2_4:-3990473 | Msa0309480:CDS |
| TAACTATTGGGGAAGTCAAC+TGG | 0.425585 | 2_4:-3991755 | Msa0309480:CDS |
| TTTCTGATGTTCTAGGGAGC+TGG | 0.434072 | 2_4:-3992471 | Msa0309480:intron |
| TCAAAAGGTAAAACTGCTAC+TGG | 0.437504 | 2_4:+3990303 | None:intergenic |
| CGTATTGCTCCTGCAGTCTC+TGG | 0.440071 | 2_4:-3993182 | Msa0309480:CDS |
| TCAGTAAGAGTGAGTTTGCC+AGG | 0.440174 | 2_4:+3992692 | None:intergenic |
| TGGAAGAACACTTCAACAAA+AGG | 0.440603 | 2_4:-3991577 | Msa0309480:CDS |
| GAGTATGGACCTGATGAGTA+TGG | 0.441232 | 2_4:-3991961 | Msa0309480:CDS |
| TTCTTCTTCTAGAAGTAGAA+TGG | 0.441369 | 2_4:+3995938 | None:intergenic |
| AGTGGATGAAATCTCCATCT+TGG | 0.442947 | 2_4:-3991624 | Msa0309480:CDS |
| CGAGTAGAGAAGGCAAAAGT+TGG | 0.445116 | 2_4:-3992396 | Msa0309480:CDS |
| TGATGTCGGATTTCAAGTTA+TGG | 0.445504 | 2_4:-3994519 | Msa0309480:CDS |
| ATCGACCGCAAAATGCCATA+TGG | 0.446830 | 2_4:-3994470 | Msa0309480:CDS |
| CTGGAAAGGACATAAGTGTA+AGG | 0.451462 | 2_4:+3993466 | None:intergenic |
| GAATAAGAGAGCCATGAGAT+TGG | 0.456321 | 2_4:-3992439 | Msa0309480:CDS |
| GCTCGAGTTCCGGAGGGAAA+TGG | 0.457901 | 2_4:-3990379 | Msa0309480:CDS |
| TCCGCAAATGTTGAAGGGCC+TGG | 0.459300 | 2_4:+3991866 | None:intergenic |
| GCCGTGATCATCAGCATCAC+TGG | 0.459913 | 2_4:+3990841 | None:intergenic |
| CCTTCTCTGCATTGCTGGAA+AGG | 0.461809 | 2_4:+3993452 | None:intergenic |
| TTTCAGTGTTGCAGCATCAA+TGG | 0.463847 | 2_4:+3991450 | None:intergenic |
| GTGCTGGAATTTATTGACTT+GGG | 0.465419 | 2_4:-3992054 | Msa0309480:CDS |
| CTGAAAATGGTATCACTATC+CGG | 0.470032 | 2_4:+3990197 | None:intergenic |
| AGTTATGGAAGATATATTGA+TGG | 0.470473 | 2_4:-3994504 | Msa0309480:CDS |
| GAAGTGTCTACTTGCGGAAG+TGG | 0.475480 | 2_4:-3991642 | Msa0309480:CDS |
| AAGGAAAGAATGTACTTGAA+TGG | 0.477040 | 2_4:+3990429 | None:intergenic |
| TCACACGCGAGCTCGAGTTC+CGG | 0.478210 | 2_4:-3990389 | Msa0309480:CDS |
| CTTGAACTGAATCAAAGAAA+AGG | 0.478406 | 2_4:-3996060 | Msa0309480:five_prime_UTR |
| AACCAAAGCAAGGGTAAGTC+CGG | 0.478888 | 2_4:-3990216 | Msa0309480:CDS |
| TCCAGGCCCTTCAACATTTG+CGG | 0.483948 | 2_4:-3991867 | Msa0309480:CDS |
| TGTTTCTATTTCTTCTGGCT+CGG | 0.486164 | 2_4:-3992343 | Msa0309480:CDS |
| TGCTGTGCTGATGTTAACTT+GGG | 0.486580 | 2_4:-3990472 | Msa0309480:CDS |
| TCGTCAATTTGGGGAAACTC+TGG | 0.487298 | 2_4:+3992785 | None:intergenic |
| GCAACTTCCGCAAATGTTGA+AGG | 0.489333 | 2_4:+3991860 | None:intergenic |
| GTCCAAGAAACCCAACAGTC+AGG | 0.490129 | 2_4:+3991170 | None:intergenic |
| ACATTAGGTCCATACTCATC+AGG | 0.492111 | 2_4:+3991952 | None:intergenic |
| AGATGTTCTCAACTGAATCA+TGG | 0.493438 | 2_4:+3995996 | None:intergenic |
| GAGGAGCCACACCTGACTGT+TGG | 0.496915 | 2_4:-3991181 | Msa0309480:CDS |
| GTAAGCTAGCCACGTGCTCA+TGG | 0.498875 | 2_4:+3993094 | None:intergenic |
| TAGGTCGAATTGGTGGGTGC+TGG | 0.499409 | 2_4:-3992070 | Msa0309480:CDS |
| ACTTCAACCATCTTCAATGT+TGG | 0.500212 | 2_4:-3990011 | Msa0309480:three_prime_UTR |
| CAGAACAGGCTGCTTACTGT+TGG | 0.503796 | 2_4:+3992739 | None:intergenic |
| CAAGAAATGAGATAATAAGT+TGG | 0.506219 | 2_4:+3995973 | None:intergenic |
| GCAAAAGAAAGATTCCCATA+TGG | 0.513468 | 2_4:+3994455 | None:intergenic |
| AATATCAGCCTCTGGAAAGC+GGG | 0.514217 | 2_4:+3993514 | None:intergenic |
| CCTTTCCAGCAATGCAGAGA+AGG | 0.514369 | 2_4:-3993452 | Msa0309480:CDS |
| TCATACTTAGGTCGAATTGG+TGG | 0.514687 | 2_4:-3992077 | Msa0309480:intron |
| GCTGACAATCAGGAGCCTTA+AGG | 0.517159 | 2_4:-3990809 | Msa0309480:CDS |
| GTCTCTCAACCATTTCCCTC+CGG | 0.518293 | 2_4:+3990370 | None:intergenic |
| CAAACAAAAGTATCAGGTTG+TGG | 0.518733 | 2_4:-3991488 | Msa0309480:CDS |
| CGATGTTCATCCTTCTCTCC+AGG | 0.522452 | 2_4:-3993778 | Msa0309480:intron |
| GAGGAGAAAATCTTATGCAT+TGG | 0.523563 | 2_4:-3992764 | Msa0309480:CDS |
| ACTTGGGAGGTGAGATGAGG+AGG | 0.526000 | 2_4:-3992038 | Msa0309480:CDS |
| GATGTTCTCAACTGAATCAT+GGG | 0.527238 | 2_4:+3995997 | None:intergenic |
| TTGTTATGAATATCAGCCTC+TGG | 0.529371 | 2_4:+3993506 | None:intergenic |
| TTTACTTTCTGGAAATCCAC+AGG | 0.530087 | 2_4:-3990629 | Msa0309480:intron |
| ATATGAGAACTGAACGAGCT+TGG | 0.533561 | 2_4:+3991825 | None:intergenic |
| TGCAGGATGAGTGGATTGAC+TGG | 0.534598 | 2_4:-3993909 | Msa0309480:intron |
| GAGAATAATATGGCATGGCC+TGG | 0.536619 | 2_4:-3992710 | Msa0309480:CDS |
| TCATACTAGCACTTAGGTCA+TGG | 0.538906 | 2_4:+3995860 | None:intergenic |
| TGGAGGACAATATCACCATT+CGG | 0.539224 | 2_4:+3991790 | None:intergenic |
| TCGACCGCAAAATGCCATAT+GGG | 0.539432 | 2_4:-3994469 | Msa0309480:CDS |
| ATTCATAACAATGCTTGCCT+GGG | 0.539656 | 2_4:-3993494 | Msa0309480:CDS |
| ATGAGAACCAACATTGAAGA+TGG | 0.542342 | 2_4:+3990004 | None:intergenic |
| ACTTTGAAAAGCTAAGGCAC+TGG | 0.543129 | 2_4:-3991204 | Msa0309480:CDS |
| CATATTCTCAACGTCACGCA+TGG | 0.545300 | 2_4:+3990693 | None:intergenic |
| GAGAACTGAACGAGCTTGGT+AGG | 0.548947 | 2_4:+3991829 | None:intergenic |
| CACGCGAGCTCGAGTTCCGG+AGG | 0.549944 | 2_4:-3990386 | Msa0309480:CDS |
| TGATGGATTGCGAGTAGAGA+AGG | 0.549980 | 2_4:-3992406 | Msa0309480:CDS |
| AGTTAACAGCTAAAGTTTGG+AGG | 0.552405 | 2_4:+3991773 | None:intergenic |
| ATGCTGATGATCACGGCTGT+TGG | 0.555284 | 2_4:-3990835 | Msa0309480:CDS |
| TTGACTTGGGAGGTGAGATG+AGG | 0.556699 | 2_4:-3992041 | Msa0309480:CDS |
| TAATGGTATTGCTAGACTCC+AGG | 0.558014 | 2_4:-3991884 | Msa0309480:CDS |
| CATACTTAGGTCGAATTGGT+GGG | 0.558496 | 2_4:-3992076 | Msa0309480:intron |
| ACTTTAGCTGTTAACTATTG+GGG | 0.561658 | 2_4:-3991766 | Msa0309480:CDS |
| GAATGGAACAATGAAGAGAA+TGG | 0.562748 | 2_4:+3990446 | None:intergenic |
| ATATGAAGAATCCAAAGAGC+TGG | 0.562753 | 2_4:+3990088 | None:intergenic |
| ATTGATGCTGCAACACTGAA+AGG | 0.562919 | 2_4:-3991448 | Msa0309480:CDS |
| TCCAGTGATGCTGATGATCA+CGG | 0.563212 | 2_4:-3990842 | Msa0309480:CDS |
| AAAACTGCTACTGGAGCAGC+AGG | 0.563294 | 2_4:+3990312 | None:intergenic |
| CCCTTGCTTTGGTTTCCTGG+TGG | 0.568291 | 2_4:+3990225 | None:intergenic |
| CTTTGAAAAGCTAAGGCACT+GGG | 0.569092 | 2_4:-3991203 | Msa0309480:CDS |
| GAACATGTCGAAGAGAAGAA+AGG | 0.570428 | 2_4:+3990410 | None:intergenic |
| GGAAATGCCATCTTGATCAC+CGG | 0.576492 | 2_4:+3993115 | None:intergenic |
| AATACGAACAAAAGCCTCCT+CGG | 0.579655 | 2_4:+3993199 | None:intergenic |
| CTTGGGAGGTGAGATGAGGA+GGG | 0.580323 | 2_4:-3992037 | Msa0309480:CDS |
| TCTAGGGAGCTGGCTTATTG+GGG | 0.581399 | 2_4:-3992461 | Msa0309480:intron |
| TATGTATTGAGCAATTCAGC+AGG | 0.582629 | 2_4:-3994424 | Msa0309480:intron |
| GTAAGCAGCCTGTTCTGAAG+TGG | 0.584299 | 2_4:-3992733 | Msa0309480:CDS |
| TGCTCCTGCAGTCTCTGGTG+TGG | 0.585301 | 2_4:-3993177 | Msa0309480:CDS |
| GAGTAGAGAAGGCAAAAGTT+GGG | 0.585980 | 2_4:-3992395 | Msa0309480:CDS |
| GCTCTTGCCGGTGATCAAGA+TGG | 0.590317 | 2_4:-3993122 | Msa0309480:CDS |
| TCAACCACACCAGAGACTGC+AGG | 0.591724 | 2_4:+3993173 | None:intergenic |
| AATAAGATATGCAGGATGAG+TGG | 0.593032 | 2_4:-3993918 | Msa0309480:intron |
| TGGAAAGGACATAAGTGTAA+GGG | 0.593431 | 2_4:+3993467 | None:intergenic |
| ATGGAATCATACTAGCACTT+AGG | 0.594258 | 2_4:+3995854 | None:intergenic |
| ATATGTAAGATCCAATCTCA+TGG | 0.594666 | 2_4:+3992428 | None:intergenic |
| ATCAGGAGCCTTAAGGAGCA+AGG | 0.597787 | 2_4:-3990802 | Msa0309480:CDS |
| TAAGCAGCCTGTTCTGAAGT+GGG | 0.599132 | 2_4:-3992732 | Msa0309480:CDS |
| TATAGGATCCCGCTTTCCAG+AGG | 0.599863 | 2_4:-3993522 | Msa0309480:intron |
| GTACACAATACCTGGAGAGA+AGG | 0.600769 | 2_4:+3993768 | None:intergenic |
| TGGATGAAATCTCCATCTTG+GGG | 0.602032 | 2_4:-3991622 | Msa0309480:CDS |
| GATTGAATGTATTGATGTCG+AGG | 0.603380 | 2_4:-3994616 | Msa0309480:CDS |
| ACCACCAGGAAACCAAAGCA+AGG | 0.604338 | 2_4:-3990226 | Msa0309480:CDS |
| CCTGATCCTGAAAATGATGT+CGG | 0.608502 | 2_4:-3994533 | Msa0309480:CDS |
| AGATGGTTGAAGTTAATGAG+AGG | 0.609992 | 2_4:+3990021 | None:intergenic |
| CAACTTCCGCAAATGTTGAA+GGG | 0.611672 | 2_4:+3991861 | None:intergenic |
| GAATATCAGCCTCTGGAAAG+CGG | 0.613934 | 2_4:+3993513 | None:intergenic |
| CCACCAGGAAACCAAAGCAA+GGG | 0.634475 | 2_4:-3990225 | Msa0309480:CDS |
| TATTTACAGAATGCACCGAA+TGG | 0.642261 | 2_4:-3991805 | Msa0309480:CDS |
| CTGGAATTTATTGACTTGGG+AGG | 0.644215 | 2_4:-3992051 | Msa0309480:CDS |
| AAAGATTGTGCACTGTGGGG+CGG | 0.646077 | 2_4:+3993150 | None:intergenic |
| AGTGGGAGAATAATATGGCA+TGG | 0.658208 | 2_4:-3992715 | Msa0309480:CDS |
| AGAGTTTCCCCAAATTGACG+AGG | 0.658413 | 2_4:-3992783 | Msa0309480:CDS |
| ACGCGAGCTCGAGTTCCGGA+GGG | 0.658637 | 2_4:-3990385 | Msa0309480:CDS |
| CTGGAGAGAAGGATGAACAT+CGG | 0.665857 | 2_4:+3993779 | None:intergenic |
| GTTGAGTAAGAATCATGTTG+TGG | 0.669931 | 2_4:-3991548 | Msa0309480:CDS |
| AGAAACCCAACAGTCAGGTG+TGG | 0.672520 | 2_4:+3991175 | None:intergenic |
| TCGACGGAAGTGTCTACTTG+CGG | 0.673498 | 2_4:-3991648 | Msa0309480:CDS |
| GGATGAAATCTCCATCTTGG+GGG | 0.678739 | 2_4:-3991621 | Msa0309480:CDS |
| ATGGCATTTCCATGAGCACG+TGG | 0.679080 | 2_4:-3993103 | Msa0309480:CDS |
| GAGAACAAATCAAAACCACC+AGG | 0.683386 | 2_4:-3990240 | Msa0309480:CDS |
| CCTTTGTCAGATAACAACTG+AGG | 0.688692 | 2_4:-3990496 | Msa0309480:intron |
| GAGTAAACTTGTCACCGAGG+AGG | 0.690606 | 2_4:-3993213 | Msa0309480:CDS |
| GCAGGATGAGTGGATTGACT+GGG | 0.700024 | 2_4:-3993908 | Msa0309480:intron |
| TGAAAAGCTAAGGCACTGGG+AGG | 0.732429 | 2_4:-3991200 | Msa0309480:CDS |
| GCAGAGTAAACTTGTCACCG+AGG | 0.737987 | 2_4:-3993216 | Msa0309480:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTTAATTTAATATCAA+TGG | - | chr2_4:3992113-3992132 | Msa0309480:intron | 10.0% |
| !!! | GTTTATTTATGATCAAATTT+TGG | - | chr2_4:3990862-3990881 | Msa0309480:CDS | 15.0% |
| !!! | TGTTTAATTTAAGTAATAGT+AGG | + | chr2_4:3990890-3990909 | None:intergenic | 15.0% |
| !!! | TAATTATCCATAAACTTTTT+AGG | - | chr2_4:3991284-3991303 | Msa0309480:intron | 15.0% |
| !! | AATAAAATGGATGAATAAAA+TGG | + | chr2_4:3992515-3992534 | None:intergenic | 15.0% |
| !! | CTAATTGAAAATGAATAAAA+TGG | + | chr2_4:3992528-3992547 | None:intergenic | 15.0% |
| !! | TTATATAATCAACAAAAAGA+TGG | + | chr2_4:3993119-3993138 | None:intergenic | 15.0% |
| !! | ATTAGAAATATAATTGATCA+AGG | + | chr2_4:3994830-3994849 | None:intergenic | 15.0% |
| !!! | AATATCTTTTTTCTTTTGAT+TGG | - | chr2_4:3994847-3994866 | Msa0309480:intron | 15.0% |
| !!! | ATATCTTTTTTCTTTTGATT+GGG | - | chr2_4:3994848-3994867 | Msa0309480:intron | 15.0% |
| !!! | TTTCCTATACATTAATTTTT+AGG | - | chr2_4:3995008-3995027 | Msa0309480:intron | 15.0% |
| !! | TTACCTAAAAATTAATGTAT+AGG | + | chr2_4:3995014-3995033 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCTGTAAACTTAT+TGG | - | chr2_4:3995127-3995146 | Msa0309480:intron | 15.0% |
| !!! | TTTTTTTCTGTAAACTTATT+GGG | - | chr2_4:3995128-3995147 | Msa0309480:intron | 15.0% |
| !! | ATATTATATTATAATACCTG+TGG | + | chr2_4:3995545-3995564 | None:intergenic | 15.0% |
| !! | TTATAATATAATATCATGCA+TGG | - | chr2_4:3995551-3995570 | Msa0309480:intron | 15.0% |
| !! | ATTTAGTTATAACTTACATT+CGG | - | chr2_4:3995584-3995603 | Msa0309480:intron | 15.0% |
| !!! | TTTTTGCTGTAAATAAAAAT+AGG | - | chr2_4:3996022-3996041 | Msa0309480:exon | 15.0% |
| !!! | CTTCTCATTTTTTTTTTATA+AGG | - | chr2_4:3996187-3996206 | Msa0309480:intron | 15.0% |
| !!! | TCATTTTACTTTTCGATTTA+TGG | - | chr2_4:3990067-3990086 | Msa0309480:three_prime_UTR | 20.0% |
| !!! | TAGGTTCTAAAATATGATAA+TGG | + | chr2_4:3990436-3990455 | None:intergenic | 20.0% |
| !! | GTAAATGCAAATTATAGTTA+TGG | - | chr2_4:3990529-3990548 | Msa0309480:intron | 20.0% |
| !!! | TAAGTATAAGCTATTTCTAT+AGG | + | chr2_4:3990676-3990695 | None:intergenic | 20.0% |
| !! | AAACATACATGGAATAATAT+AGG | + | chr2_4:3990788-3990807 | None:intergenic | 20.0% |
| !! | ACTTTCTTCTTTGTATAAAA+AGG | + | chr2_4:3991036-3991055 | None:intergenic | 20.0% |
| !!! | TTTTATACAAAGAAGAAAGT+AGG | - | chr2_4:3991036-3991055 | Msa0309480:intron | 20.0% |
| !! | AATCTATCCTAAAAAGTTTA+TGG | + | chr2_4:3991294-3991313 | None:intergenic | 20.0% |
| !! | TTCGTTAATATATTATCGTT+TGG | + | chr2_4:3991835-3991854 | None:intergenic | 20.0% |
| !! | ATATACCTATAAACATTTCA+AGG | + | chr2_4:3992008-3992027 | None:intergenic | 20.0% |
| !!! | GATACTATTATTTGACTTTT+TGG | - | chr2_4:3992213-3992232 | Msa0309480:intron | 20.0% |
| !!! | TTATTTGAGTTAACATTCAT+CGG | - | chr2_4:3993949-3993968 | Msa0309480:intron | 20.0% |
| !!! | TTTTACTTACATTCATACTT+AGG | - | chr2_4:3994066-3994085 | Msa0309480:intron | 20.0% |
| !!! | AATTAGTTTTCTCATATTCA+AGG | - | chr2_4:3995152-3995171 | Msa0309480:intron | 20.0% |
| !!! | ACTTGTTGAAAATGTTAATT+TGG | - | chr2_4:3995209-3995228 | Msa0309480:intron | 20.0% |
| !! | CTTGTTGAAAATGTTAATTT+GGG | - | chr2_4:3995210-3995229 | Msa0309480:intron | 20.0% |
| !!! | ATCTTTTGTATTGTATTTGA+CGG | + | chr2_4:3995425-3995444 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTATAAGGAGAG+AGG | - | chr2_4:3996194-3996213 | Msa0309480:five_prime_UTR | 20.0% |
| !!! | TTTTTTTTTATAAGGAGAGA+GGG | - | chr2_4:3996195-3996214 | Msa0309480:five_prime_UTR | 20.0% |
| ! | CAAGAAATGAGATAATAAGT+TGG | + | chr2_4:3990185-3990204 | None:intergenic | 25.0% |
| !! | AAGTTTTCATTCAAGTCTTT+AGG | - | chr2_4:3990257-3990276 | Msa0309480:CDS | 25.0% |
| !! | TATTGGATGTATGTTTCTAA+TGG | - | chr2_4:3990361-3990380 | Msa0309480:CDS | 25.0% |
| ! | ACAAATAGGTGTTTAACTAA+TGG | + | chr2_4:3990459-3990478 | None:intergenic | 25.0% |
| !!! | AATAAGTTGTTTTTCCAAAC+AGG | - | chr2_4:3990734-3990753 | Msa0309480:CDS | 25.0% |
| !!! | ATAAGTTGTTTTTCCAAACA+GGG | - | chr2_4:3990735-3990754 | Msa0309480:CDS | 25.0% |
| ! | TAGCATATCATATTTGTACT+TGG | + | chr2_4:3990761-3990780 | None:intergenic | 25.0% |
| !! | TATTCCATGTATGTTTCTAA+TGG | - | chr2_4:3990792-3990811 | Msa0309480:CDS | 25.0% |
| ! | AATTCCATTAGAAACATACA+TGG | + | chr2_4:3990368-3990387 | None:intergenic | 25.0% |
| ! | CTAATGATTCGATTTAATGT+CGG | - | chr2_4:3991002-3991021 | Msa0309480:intron | 25.0% |
| ! | TTGTGAGCTTAACTATTAAA+AGG | - | chr2_4:3991413-3991432 | Msa0309480:intron | 25.0% |
| ! | GGATAGAATCTTCAAAAAAT+TGG | + | chr2_4:3991513-3991532 | None:intergenic | 25.0% |
| ! | TCAATACATTCAATCTTTCT+TGG | + | chr2_4:3991534-3991553 | None:intergenic | 25.0% |
| ! | AGTTATGGAAGATATATTGA+TGG | - | chr2_4:3991651-3991670 | Msa0309480:CDS | 25.0% |
| ! | ATTCAAGACTAAGTTACATA+TGG | - | chr2_4:3991854-3991873 | Msa0309480:CDS | 25.0% |
| !!! | TTTTTGGAAATAAGATATGC+AGG | - | chr2_4:3992229-3992248 | Msa0309480:intron | 25.0% |
| !! | TGTTTTGTATAAGTTAACCA+CGG | - | chr2_4:3992454-3992473 | Msa0309480:CDS | 25.0% |
| ! | ATAAAATGGAATACCAAAAG+AGG | + | chr2_4:3992501-3992520 | None:intergenic | 25.0% |
| !! | TGAGTGATTTTCTTTTGTTA+GGG | - | chr2_4:3992829-3992848 | Msa0309480:intron | 25.0% |
| !!! | TATGATTTTGAGAGATCATT+TGG | - | chr2_4:3992908-3992927 | Msa0309480:intron | 25.0% |
| !!! | ATGATTTTGAGAGATCATTT+GGG | - | chr2_4:3992909-3992928 | Msa0309480:intron | 25.0% |
| ! | GTTGATTATATAATGACCTT+AGG | - | chr2_4:3993126-3993145 | Msa0309480:CDS | 25.0% |
| ! | ACTAACTATCCAGATAAAAT+GGG | + | chr2_4:3993252-3993271 | None:intergenic | 25.0% |
| !! | TGATAAAGCAATCTATTTTG+AGG | - | chr2_4:3993483-3993502 | Msa0309480:CDS | 25.0% |
| !!! | TTCAAGATTTTAAGTAGGAT+TGG | - | chr2_4:3993555-3993574 | Msa0309480:intron | 25.0% |
| !! | TTTATGTTTTCTGATGTTCT+AGG | - | chr2_4:3993677-3993696 | Msa0309480:intron | 25.0% |
| !! | TTATGTTTTCTGATGTTCTA+GGG | - | chr2_4:3993678-3993697 | Msa0309480:intron | 25.0% |
| !!! | AATTCTAAGACAGAAAAAAC+TGG | + | chr2_4:3993867-3993886 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGTCTTAGAATTG+TGG | - | chr2_4:3993868-3993887 | Msa0309480:CDS | 25.0% |
| ! | AATAGTTAACAGCTAAAGTT+TGG | + | chr2_4:3994388-3994407 | None:intergenic | 25.0% |
| ! | AAACTTTAGCTGTTAACTAT+TGG | - | chr2_4:3994387-3994406 | Msa0309480:intron | 25.0% |
| ! | AACTTTAGCTGTTAACTATT+GGG | - | chr2_4:3994388-3994407 | Msa0309480:intron | 25.0% |
| ! | TTAAAAAGATCAATGTTGCT+TGG | + | chr2_4:3994737-3994756 | None:intergenic | 25.0% |
| !! | AAGCAACATTGATCTTTTTA+AGG | - | chr2_4:3994736-3994755 | Msa0309480:intron | 25.0% |
| !!! | AACATTGATCTTTTTAAGGT+TGG | - | chr2_4:3994740-3994759 | Msa0309480:intron | 25.0% |
| ! | ATTAAAGGAACACAAAATCA+AGG | + | chr2_4:3994774-3994793 | None:intergenic | 25.0% |
| ! | GAAATTGTGAGAATCATTAA+AGG | + | chr2_4:3994789-3994808 | None:intergenic | 25.0% |
| !! | AAGGTTTTCTCAATAGTTAA+AGG | + | chr2_4:3994811-3994830 | None:intergenic | 25.0% |
| ! | ATTGGGTTTCAAAAGTAATA+TGG | - | chr2_4:3994865-3994884 | Msa0309480:intron | 25.0% |
| !! | TTCAAAGTTTTTGACAGTTA+AGG | + | chr2_4:3994939-3994958 | None:intergenic | 25.0% |
| !! | TCAAAAACTTTGAAAAGCTA+AGG | - | chr2_4:3994945-3994964 | Msa0309480:intron | 25.0% |
| ! | AAATAATCATCTTCAGACAA+CGG | + | chr2_4:3995064-3995083 | None:intergenic | 25.0% |
| ! | TTTCAACAAGTATGTTCTAT+GGG | + | chr2_4:3995200-3995219 | None:intergenic | 25.0% |
| !! | TTTTCAACAAGTATGTTCTA+TGG | + | chr2_4:3995201-3995220 | None:intergenic | 25.0% |
| !! | ATACGTTCAATTTTACTTTC+TGG | - | chr2_4:3995515-3995534 | Msa0309480:intron | 25.0% |
| !!! | TTTTTTTTATAAGGAGAGAG+GGG | - | chr2_4:3996196-3996215 | Msa0309480:five_prime_UTR | 25.0% |
| !!! | AGGGGTATTATTGATTATTT+AGG | - | chr2_4:3996214-3996233 | Msa0309480:five_prime_UTR | 25.0% |
| !! | GGGGTATTATTGATTATTTA+GGG | - | chr2_4:3996215-3996234 | Msa0309480:five_prime_UTR | 25.0% |
| CTTGAACTGAATCAAAGAAA+AGG | - | chr2_4:3990095-3990114 | Msa0309480:three_prime_UTR | 30.0% | |
| AAGAAGAAGAAGAAGAAGAA+TGG | - | chr2_4:3990124-3990143 | Msa0309480:three_prime_UTR | 30.0% | |
| AGAAGAAGAAGAAGAAGAAT+GGG | - | chr2_4:3990125-3990144 | Msa0309480:three_prime_UTR | 30.0% | |
| ! | TTCTTCTTCTAGAAGTAGAA+TGG | + | chr2_4:3990220-3990239 | None:intergenic | 30.0% |
| AAGAGTGAGTAATGAATGAA+TGG | + | chr2_4:3990323-3990342 | None:intergenic | 30.0% | |
| ATAGGTGTTTAACTAATGGT+AGG | + | chr2_4:3990455-3990474 | None:intergenic | 30.0% | |
| ATCCAAAAAAACAAACAGTC+TGG | + | chr2_4:3990499-3990518 | None:intergenic | 30.0% | |
| AAATGGTAGCTTCTCAAATA+TGG | + | chr2_4:3990916-3990935 | None:intergenic | 30.0% | |
| AAAAACAAACAGTCTGGAAA+TGG | + | chr2_4:3990933-3990952 | None:intergenic | 30.0% | |
| !!! | TTTCCAGACTGTTTGTTTTT+TGG | - | chr2_4:3990933-3990952 | Msa0309480:intron | 30.0% |
| AATCCAAAAAACAAACAGTC+TGG | + | chr2_4:3990939-3990958 | None:intergenic | 30.0% | |
| CGACATTAAATCGAATCATT+AGG | + | chr2_4:3991004-3991023 | None:intergenic | 30.0% | |
| !! | CTCACAAACAGAAAGTATTA+AGG | + | chr2_4:3991400-3991419 | None:intergenic | 30.0% |
| GAAGAGACACTACATAATTT+AGG | + | chr2_4:3991459-3991478 | None:intergenic | 30.0% | |
| AATTATGTAGTGTCTCTTCT+TGG | - | chr2_4:3991460-3991479 | Msa0309480:CDS | 30.0% | |
| ! | AACTTTTCTATACTGCTACT+TGG | - | chr2_4:3991796-3991815 | Msa0309480:CDS | 30.0% |
| !! | ACTTTTCTATACTGCTACTT+GGG | - | chr2_4:3991797-3991816 | Msa0309480:CDS | 30.0% |
| !! | TTATCGTTTGGTGTATTCAT+TGG | + | chr2_4:3991823-3991842 | None:intergenic | 30.0% |
| !! | TAATTGTTTTGTGCATTCCA+AGG | + | chr2_4:3991893-3991912 | None:intergenic | 30.0% |
| CTGTTATTACGTTGTTCTTA+CGG | + | chr2_4:3991932-3991951 | None:intergenic | 30.0% | |
| !! | TTTGGCCTTGAAATGTTTAT+AGG | - | chr2_4:3992000-3992019 | Msa0309480:CDS | 30.0% |
| AGTATCTGTATCAGTTTGAT+AGG | + | chr2_4:3992199-3992218 | None:intergenic | 30.0% | |
| ATATAGTGATGCTCGTAATT+TGG | - | chr2_4:3992314-3992333 | Msa0309480:intron | 30.0% | |
| !! | CTGCTTTAGATTTTTGTCAA+GGG | - | chr2_4:3992347-3992366 | Msa0309480:CDS | 30.0% |
| ! | AATTTGCATTTGACCTCTTT+TGG | - | chr2_4:3992485-3992504 | Msa0309480:intron | 30.0% |
| ! | GTGAGTGATTTTCTTTTGTT+AGG | - | chr2_4:3992828-3992847 | Msa0309480:intron | 30.0% |
| ! | TTCTTTTGTTAGGGATTTCT+TGG | - | chr2_4:3992838-3992857 | Msa0309480:intron | 30.0% |
| TTAAAAAGATTGTGCACTGT+GGG | + | chr2_4:3993012-3993031 | None:intergenic | 30.0% | |
| ATCCCTGAGTTAAAGATAAA+TGG | - | chr2_4:3993178-3993197 | Msa0309480:CDS | 30.0% | |
| GACCATTTATCTTTAACTCA+GGG | + | chr2_4:3993183-3993202 | None:intergenic | 30.0% | |
| AGACCATTTATCTTTAACTC+AGG | + | chr2_4:3993184-3993203 | None:intergenic | 30.0% | |
| !! | GAACTAGAAGCATTTGAAAT+CGG | + | chr2_4:3993219-3993238 | None:intergenic | 30.0% |
| !! | TCAAATGCTTCTAGTTCATT+AGG | - | chr2_4:3993222-3993241 | Msa0309480:intron | 30.0% |
| CACTAACTATCCAGATAAAA+TGG | + | chr2_4:3993253-3993272 | None:intergenic | 30.0% | |
| !! | TCAGGTTCAAGATTTTAAGT+AGG | - | chr2_4:3993550-3993569 | Msa0309480:intron | 30.0% |
| !! | AGATTTTAAGTAGGATTGGT+AGG | - | chr2_4:3993559-3993578 | Msa0309480:intron | 30.0% |
| ATATGTAAGATCCAATCTCA+TGG | + | chr2_4:3993730-3993749 | None:intergenic | 30.0% | |
| AGATTGGATCTTACATATGA+TGG | - | chr2_4:3993732-3993751 | Msa0309480:intron | 30.0% | |
| ACTTTAGCTGTTAACTATTG+GGG | - | chr2_4:3994389-3994408 | Msa0309480:intron | 30.0% | |
| !!! | CTAGTACTTCTACTAGTTTT+TGG | - | chr2_4:3994558-3994577 | Msa0309480:CDS | 30.0% |
| !! | AACAAGCAAACAAAAGTATC+AGG | - | chr2_4:3994661-3994680 | Msa0309480:intron | 30.0% |
| ! | TTTTTGACAGTTAAGGTGAT+AGG | + | chr2_4:3994932-3994951 | None:intergenic | 30.0% |
| ! | TTTTGTATTGTATTTGACGG+TGG | + | chr2_4:3995422-3995441 | None:intergenic | 30.0% |
| AAGGAAAGAATGTACTTGAA+TGG | + | chr2_4:3995729-3995748 | None:intergenic | 30.0% | |
| ! | CTAGATTCTTCGTTTTCAAA+AGG | + | chr2_4:3995870-3995889 | None:intergenic | 30.0% |
| GAAGAAGAAGAAGAAGAATG+GGG | - | chr2_4:3990126-3990145 | Msa0309480:three_prime_UTR | 35.0% | |
| GATGTTCTCAACTGAATCAT+GGG | + | chr2_4:3990161-3990180 | None:intergenic | 35.0% | |
| AGATGTTCTCAACTGAATCA+TGG | + | chr2_4:3990162-3990181 | None:intergenic | 35.0% | |
| ATGGAATCATACTAGCACTT+AGG | + | chr2_4:3990304-3990323 | None:intergenic | 35.0% | |
| AATGGTAGGTTCTCACAAAT+AGG | + | chr2_4:3990473-3990492 | None:intergenic | 35.0% | |
| AAACAAACAGTCTGGACTAA+TGG | + | chr2_4:3990491-3990510 | None:intergenic | 35.0% | |
| !!! | GTCCAGACTGTTTGTTTTTT+TGG | - | chr2_4:3990494-3990513 | Msa0309480:intron | 35.0% |
| ! | GTTTTCATAAGCAATCTTGG+AGG | + | chr2_4:3990607-3990626 | None:intergenic | 35.0% |
| !! | GCTGTTTTCATAAGCAATCT+TGG | + | chr2_4:3990610-3990629 | None:intergenic | 35.0% |
| ! | GATTGAATGTATTGATGTCG+AGG | - | chr2_4:3991539-3991558 | Msa0309480:CDS | 35.0% |
| ! | TGAAATCCGACATCATTTTC+AGG | + | chr2_4:3991631-3991650 | None:intergenic | 35.0% |
| !! | TGATGTCGGATTTCAAGTTA+TGG | - | chr2_4:3991636-3991655 | Msa0309480:CDS | 35.0% |
| GCAAAAGAAAGATTCCCATA+TGG | + | chr2_4:3991703-3991722 | None:intergenic | 35.0% | |
| TATGTATTGAGCAATTCAGC+AGG | - | chr2_4:3991731-3991750 | Msa0309480:CDS | 35.0% | |
| AATTCAGCAGGTGAATTACA+TGG | - | chr2_4:3991743-3991762 | Msa0309480:CDS | 35.0% | |
| AAAAGACAAGACCATCGTTA+AGG | + | chr2_4:3992153-3992172 | None:intergenic | 35.0% | |
| AATAAGATATGCAGGATGAG+TGG | - | chr2_4:3992237-3992256 | Msa0309480:intron | 35.0% | |
| !! | GCTGCTTTAGATTTTTGTCA+AGG | - | chr2_4:3992346-3992365 | Msa0309480:CDS | 35.0% |
| TTGCTCTTGAACACGTTTAT+AGG | - | chr2_4:3992616-3992635 | Msa0309480:intron | 35.0% | |
| TTGTTATGAATATCAGCCTC+TGG | + | chr2_4:3992652-3992671 | None:intergenic | 35.0% | |
| TATTCATAACAATGCTTGCC+TGG | - | chr2_4:3992660-3992679 | Msa0309480:intron | 35.0% | |
| ATTCATAACAATGCTTGCCT+GGG | - | chr2_4:3992661-3992680 | Msa0309480:intron | 35.0% | |
| TGGAAAGGACATAAGTGTAA+GGG | + | chr2_4:3992691-3992710 | None:intergenic | 35.0% | |
| TAAAAAGATTGTGCACTGTG+GGG | + | chr2_4:3993011-3993030 | None:intergenic | 35.0% | |
| CTTAAAAAGATTGTGCACTG+TGG | + | chr2_4:3993013-3993032 | None:intergenic | 35.0% | |
| ! | CACAGTGCACAATCTTTTTA+AGG | - | chr2_4:3993011-3993030 | Msa0309480:intron | 35.0% |
| !!! | AATCTTTTTAAGGCTCTTGC+CGG | - | chr2_4:3993021-3993040 | Msa0309480:intron | 35.0% |
| ! | TTAGGTGTTCCCATTTTATC+TGG | - | chr2_4:3993240-3993259 | Msa0309480:intron | 35.0% |
| ! | TGCTGAACTTGTACTGATAT+TGG | - | chr2_4:3993311-3993330 | Msa0309480:intron | 35.0% |
| ! | ATTTTCTCCTCGTCAATTTG+GGG | + | chr2_4:3993382-3993401 | None:intergenic | 35.0% |
| ! | GATTTTCTCCTCGTCAATTT+GGG | + | chr2_4:3993383-3993402 | None:intergenic | 35.0% |
| ! | AGATTTTCTCCTCGTCAATT+TGG | + | chr2_4:3993384-3993403 | None:intergenic | 35.0% |
| GAGGAGAAAATCTTATGCAT+TGG | - | chr2_4:3993391-3993410 | Msa0309480:intron | 35.0% | |
| ! | TCTGAAGTGGGAGAATAATA+TGG | - | chr2_4:3993435-3993454 | Msa0309480:intron | 35.0% |
| GTAAAAGATCGTAAACACGA+GGG | - | chr2_4:3993585-3993604 | Msa0309480:intron | 35.0% | |
| !! | TCTGCTGTTTCTATTTCTTC+TGG | - | chr2_4:3993807-3993826 | Msa0309480:CDS | 35.0% |
| ! | TGTTTCTATTTCTTCTGGCT+CGG | - | chr2_4:3993812-3993831 | Msa0309480:CDS | 35.0% |
| TCAAATAACCAGAACATCAG+AGG | + | chr2_4:3993937-3993956 | None:intergenic | 35.0% | |
| CAAAAAGCAACAGAGAAAAG+TGG | + | chr2_4:3994001-3994020 | None:intergenic | 35.0% | |
| CATTCATACTTAGGTCGAAT+TGG | - | chr2_4:3994075-3994094 | Msa0309480:intron | 35.0% | |
| !! | GTGCTGGAATTTATTGACTT+GGG | - | chr2_4:3994101-3994120 | Msa0309480:intron | 35.0% |
| GAGTCTAGCAATACCATTAA+TGG | + | chr2_4:3994270-3994289 | None:intergenic | 35.0% | |
| TATTTACAGAATGCACCGAA+TGG | - | chr2_4:3994350-3994369 | Msa0309480:intron | 35.0% | |
| AGTTAACAGCTAAAGTTTGG+AGG | + | chr2_4:3994385-3994404 | None:intergenic | 35.0% | |
| ! | TCGTTAGAAGTTCGATTTTC+TGG | + | chr2_4:3994455-3994474 | None:intergenic | 35.0% |
| !! | AACCATGTTTTTGACATCGA+CGG | - | chr2_4:3994491-3994510 | Msa0309480:CDS | 35.0% |
| TGGAAGAACACTTCAACAAA+AGG | - | chr2_4:3994578-3994597 | Msa0309480:CDS | 35.0% | |
| GTTGAGTAAGAATCATGTTG+TGG | - | chr2_4:3994607-3994626 | Msa0309480:CDS | 35.0% | |
| !! | CAAACAAAAGTATCAGGTTG+TGG | - | chr2_4:3994667-3994686 | Msa0309480:intron | 35.0% |
| GATATATGAGAGCAAGTTTC+TGG | + | chr2_4:3995291-3995310 | None:intergenic | 35.0% | |
| ! | TTTACTTTCTGGAAATCCAC+AGG | - | chr2_4:3995526-3995545 | Msa0309480:intron | 35.0% |
| GTTGTTATCTGACAAAGGAT+TGG | + | chr2_4:3995657-3995676 | None:intergenic | 35.0% | |
| GAATGGAACAATGAAGAGAA+TGG | + | chr2_4:3995712-3995731 | None:intergenic | 35.0% | |
| !! | TCACGAAACTTTTAAGAGAG+CGG | - | chr2_4:3995808-3995827 | Msa0309480:intron | 35.0% |
| TCAAAAGGTAAAACTGCTAC+TGG | + | chr2_4:3995855-3995874 | None:intergenic | 35.0% | |
| TAGATCAGAAGTTTCCTTGA+AGG | - | chr2_4:3995887-3995906 | Msa0309480:CDS | 35.0% | |
| TTTGTTCTCAAGTTCCTTCA+AGG | + | chr2_4:3995904-3995923 | None:intergenic | 35.0% | |
| CTGAAAATGGTATCACTATC+CGG | + | chr2_4:3995961-3995980 | None:intergenic | 35.0% | |
| ! | GGATAGTGATACCATTTTCA+GGG | - | chr2_4:3995960-3995979 | Msa0309480:CDS | 35.0% |
| ATATGAAGAATCCAAAGAGC+TGG | + | chr2_4:3996070-3996089 | None:intergenic | 35.0% | |
| AGATGGTTGAAGTTAATGAG+AGG | + | chr2_4:3996137-3996156 | None:intergenic | 35.0% | |
| ACTTCAACCATCTTCAATGT+TGG | - | chr2_4:3996144-3996163 | Msa0309480:intron | 35.0% | |
| ATGAGAACCAACATTGAAGA+TGG | + | chr2_4:3996154-3996173 | None:intergenic | 35.0% | |
| TCATACTAGCACTTAGGTCA+TGG | + | chr2_4:3990298-3990317 | None:intergenic | 40.0% | |
| AAACAGTCTGGACTAATGGT+AGG | + | chr2_4:3990487-3990506 | None:intergenic | 40.0% | |
| TATTTGTACTTGGCCCTGTT+TGG | + | chr2_4:3990751-3990770 | None:intergenic | 40.0% | |
| AAGAAAGTAGGAGCCAATGA+AGG | - | chr2_4:3991048-3991067 | Msa0309480:intron | 40.0% | |
| AAGTGCAGTTTAGGTGAGTA+GGG | + | chr2_4:3991227-3991246 | None:intergenic | 40.0% | |
| AAAGTGCAGTTTAGGTGAGT+AGG | + | chr2_4:3991228-3991247 | None:intergenic | 40.0% | |
| ACTCACCTAAACTGCACTTT+CGG | - | chr2_4:3991228-3991247 | Msa0309480:CDS | 40.0% | |
| AGACTGTTTAGGAGAGCTTA+CGG | - | chr2_4:3991251-3991270 | Msa0309480:intron | 40.0% | |
| CCTGATCCTGAAAATGATGT+CGG | - | chr2_4:3991622-3991641 | Msa0309480:CDS | 40.0% | |
| ! | GATTCCCATATGGCATTTTG+CGG | + | chr2_4:3991693-3991712 | None:intergenic | 40.0% |
| ATGGTTTGAACTTGTGTCCT+TGG | - | chr2_4:3991873-3991892 | Msa0309480:CDS | 40.0% | |
| GTTGTTCTTACGGTAGCTTT+GGG | + | chr2_4:3991922-3991941 | None:intergenic | 40.0% | |
| CCAAAGAAGAAACAAGAGAG+TGG | + | chr2_4:3991985-3992004 | None:intergenic | 40.0% | |
| ! | CCACTCTCTTGTTTCTTCTT+TGG | - | chr2_4:3991982-3992001 | Msa0309480:CDS | 40.0% |
| TGTGATTCTTGTGCTAGCTA+TGG | - | chr2_4:3992089-3992108 | Msa0309480:intron | 40.0% | |
| GTGATTCTTGTGCTAGCTAT+GGG | - | chr2_4:3992090-3992109 | Msa0309480:intron | 40.0% | |
| TCTGAATCCTTCCTTAACGA+TGG | - | chr2_4:3992139-3992158 | Msa0309480:intron | 40.0% | |
| GCATCACTATATACAGCTTC+TGG | + | chr2_4:3992306-3992325 | None:intergenic | 40.0% | |
| ATAGAGCAGTACACAATACC+TGG | + | chr2_4:3992398-3992417 | None:intergenic | 40.0% | |
| ! | AGGTATTGTGTACTGCTCTA+TGG | - | chr2_4:3992397-3992416 | Msa0309480:CDS | 40.0% |
| ATGCAAATTTGATGAGACCG+TGG | + | chr2_4:3992474-3992493 | None:intergenic | 40.0% | |
| ! | ATAAGTGTAAGGGTTTTCCC+AGG | + | chr2_4:3992681-3992700 | None:intergenic | 40.0% |
| CTGGAAAGGACATAAGTGTA+AGG | + | chr2_4:3992692-3992711 | None:intergenic | 40.0% | |
| CATTTCACATGCTCATAGAG+TGG | + | chr2_4:3992773-3992792 | None:intergenic | 40.0% | |
| AATACGAACAAAAGCCTCCT+CGG | + | chr2_4:3992959-3992978 | None:intergenic | 40.0% | |
| TGCTTGAATGTCTTCTCCTA+AGG | + | chr2_4:3993145-3993164 | None:intergenic | 40.0% | |
| GTAGAGTACGTCGAGAAAAT+AGG | - | chr2_4:3993335-3993354 | Msa0309480:intron | 40.0% | |
| TTATTCTCCCACTTCAGAAC+AGG | + | chr2_4:3993433-3993452 | None:intergenic | 40.0% | |
| AGTGGGAGAATAATATGGCA+TGG | - | chr2_4:3993440-3993459 | Msa0309480:intron | 40.0% | |
| CTGTCTCATACAATGTAGTC+AGG | - | chr2_4:3993532-3993551 | Msa0309480:intron | 40.0% | |
| ! | TTTAAGTAGGATTGGTAGGC+TGG | - | chr2_4:3993563-3993582 | Msa0309480:intron | 40.0% |
| GGTAAAAGATCGTAAACACG+AGG | - | chr2_4:3993584-3993603 | Msa0309480:intron | 40.0% | |
| TCGTAACACGATTCGTAAGT+AGG | - | chr2_4:3993608-3993627 | Msa0309480:intron | 40.0% | |
| ACACGATTCGTAAGTAGGAT+TGG | - | chr2_4:3993613-3993632 | Msa0309480:intron | 40.0% | |
| ! | GATTCGTAAGTAGGATTGGT+AGG | - | chr2_4:3993617-3993636 | Msa0309480:intron | 40.0% |
| GAATAAGAGAGCCATGAGAT+TGG | - | chr2_4:3993716-3993735 | Msa0309480:intron | 40.0% | |
| GAGTAGAGAAGGCAAAAGTT+GGG | - | chr2_4:3993760-3993779 | Msa0309480:intron | 40.0% | |
| TCAAAAAGCGAAGACCCTAA+AGG | + | chr2_4:3993786-3993805 | None:intergenic | 40.0% | |
| AAAGCAACAGAGAAAAGTGG+AGG | + | chr2_4:3993998-3994017 | None:intergenic | 40.0% | |
| TCATACTTAGGTCGAATTGG+TGG | - | chr2_4:3994078-3994097 | Msa0309480:intron | 40.0% | |
| CATACTTAGGTCGAATTGGT+GGG | - | chr2_4:3994079-3994098 | Msa0309480:intron | 40.0% | |
| ! | GGTGCTGGAATTTATTGACT+TGG | - | chr2_4:3994100-3994119 | Msa0309480:intron | 40.0% |
| !! | CTGGAATTTATTGACTTGGG+AGG | - | chr2_4:3994104-3994123 | Msa0309480:intron | 40.0% |
| ACATTAGGTCCATACTCATC+AGG | + | chr2_4:3994206-3994225 | None:intergenic | 40.0% | |
| ! | GTATGGACCTAATGTTTTCG+AGG | - | chr2_4:3994211-3994230 | Msa0309480:intron | 40.0% |
| TAATGGTATTGCTAGACTCC+AGG | - | chr2_4:3994271-3994290 | Msa0309480:intron | 40.0% | |
| CAACTTCCGCAAATGTTGAA+GGG | + | chr2_4:3994297-3994316 | None:intergenic | 40.0% | |
| ATATGAGAACTGAACGAGCT+TGG | + | chr2_4:3994333-3994352 | None:intergenic | 40.0% | |
| TGGAGGACAATATCACCATT+CGG | + | chr2_4:3994368-3994387 | None:intergenic | 40.0% | |
| TAACTATTGGGGAAGTCAAC+TGG | - | chr2_4:3994400-3994419 | Msa0309480:intron | 40.0% | |
| !!! | TTCGATTTTCTGGCTGATAG+CGG | + | chr2_4:3994445-3994464 | None:intergenic | 40.0% |
| TTCCGTCGATGTCAAAAACA+TGG | + | chr2_4:3994496-3994515 | None:intergenic | 40.0% | |
| AGTGGATGAAATCTCCATCT+TGG | - | chr2_4:3994531-3994550 | Msa0309480:CDS | 40.0% | |
| GTGGATGAAATCTCCATCTT+GGG | - | chr2_4:3994532-3994551 | Msa0309480:CDS | 40.0% | |
| TGGATGAAATCTCCATCTTG+GGG | - | chr2_4:3994533-3994552 | Msa0309480:CDS | 40.0% | |
| TTTCAGTGTTGCAGCATCAA+TGG | + | chr2_4:3994708-3994727 | None:intergenic | 40.0% | |
| ATTGATGCTGCAACACTGAA+AGG | - | chr2_4:3994707-3994726 | Msa0309480:intron | 40.0% | |
| ! | ACTTTGAAAAGCTAAGGCAC+TGG | - | chr2_4:3994951-3994970 | Msa0309480:intron | 40.0% |
| ! | CTTTGAAAAGCTAAGGCACT+GGG | - | chr2_4:3994952-3994971 | Msa0309480:intron | 40.0% |
| CGGCAGAACAAAGAAAAATG+AGG | + | chr2_4:3995044-3995063 | None:intergenic | 40.0% | |
| ! | GTTTCTGGAAAGACACAACA+AGG | + | chr2_4:3995276-3995295 | None:intergenic | 40.0% |
| CCTCAGTTGTTATCTGACAA+AGG | + | chr2_4:3995662-3995681 | None:intergenic | 40.0% | |
| CCTTTGTCAGATAACAACTG+AGG | - | chr2_4:3995659-3995678 | Msa0309480:intron | 40.0% | |
| ! | TTGCTGTGCTGATGTTAACT+TGG | - | chr2_4:3995682-3995701 | Msa0309480:intron | 40.0% |
| ! | TGCTGTGCTGATGTTAACTT+GGG | - | chr2_4:3995683-3995702 | Msa0309480:intron | 40.0% |
| GAACATGTCGAAGAGAAGAA+AGG | + | chr2_4:3995748-3995767 | None:intergenic | 40.0% | |
| GAGAACAAATCAAAACCACC+AGG | - | chr2_4:3995915-3995934 | Msa0309480:CDS | 40.0% | |
| ! | CGGATAGTGATACCATTTTC+AGG | - | chr2_4:3995959-3995978 | Msa0309480:CDS | 40.0% |
| TCTGTAAGCAACCCTGAAAA+TGG | + | chr2_4:3995974-3995993 | None:intergenic | 40.0% | |
| !! | CTAGCTTTTAACCAGCTCTT+TGG | - | chr2_4:3996056-3996075 | Msa0309480:five_prime_UTR | 40.0% |
| AAGTAGGAGCCAATGAAGGT+TGG | - | chr2_4:3991052-3991071 | Msa0309480:intron | 45.0% | |
| CCAACTAAGCCAACCTTCAT+TGG | + | chr2_4:3991064-3991083 | None:intergenic | 45.0% | |
| !! | CCAATGAAGGTTGGCTTAGT+TGG | - | chr2_4:3991061-3991080 | Msa0309480:intron | 45.0% |
| !! | TGAAGGTTGGCTTAGTTGGT+TGG | - | chr2_4:3991065-3991084 | Msa0309480:intron | 45.0% |
| ! | AAGAAGTTGACTCACCCAGA+AGG | - | chr2_4:3991089-3991108 | Msa0309480:intron | 45.0% |
| GTACTTACAACCCACCAAAG+AGG | + | chr2_4:3991148-3991167 | None:intergenic | 45.0% | |
| GGCTCAAAGAGTGGTAACAA+AGG | + | chr2_4:3991170-3991189 | None:intergenic | 45.0% | |
| TTACCACTCTTTGAGCCTTG+AGG | - | chr2_4:3991173-3991192 | Msa0309480:CDS | 45.0% | |
| AGTTTAGGTGAGTAGGGCTT+TGG | + | chr2_4:3991221-3991240 | None:intergenic | 45.0% | |
| ! | AGTCTCCGAAAGTGCAGTTT+AGG | + | chr2_4:3991236-3991255 | None:intergenic | 45.0% |
| TGCACTTTCGGAGACTGTTT+AGG | - | chr2_4:3991240-3991259 | Msa0309480:CDS | 45.0% | |
| ! | CTTTGACCAGTTTTTGCGAG+CGG | + | chr2_4:3991595-3991614 | None:intergenic | 45.0% |
| TCGCAAAAACTGGTCAAAGC+CGG | - | chr2_4:3991596-3991615 | Msa0309480:CDS | 45.0% | |
| !! | CATTTTCAGGATCAGGCTTC+CGG | + | chr2_4:3991618-3991637 | None:intergenic | 45.0% |
| !! | CCGACATCATTTTCAGGATC+AGG | + | chr2_4:3991625-3991644 | None:intergenic | 45.0% |
| ATCGACCGCAAAATGCCATA+TGG | - | chr2_4:3991685-3991704 | Msa0309480:CDS | 45.0% | |
| TCGACCGCAAAATGCCATAT+GGG | - | chr2_4:3991686-3991705 | Msa0309480:CDS | 45.0% | |
| CGTTGTTCTTACGGTAGCTT+TGG | + | chr2_4:3991923-3991942 | None:intergenic | 45.0% | |
| ! | GCGTTCTCTTCACAAGTTGA+TGG | - | chr2_4:3992042-3992061 | Msa0309480:CDS | 45.0% |
| GACAAGACCATCGTTAAGGA+AGG | + | chr2_4:3992149-3992168 | None:intergenic | 45.0% | |
| CTGGAGAGAAGGATGAACAT+CGG | + | chr2_4:3992379-3992398 | None:intergenic | 45.0% | |
| GTACACAATACCTGGAGAGA+AGG | + | chr2_4:3992390-3992409 | None:intergenic | 45.0% | |
| ! | AATATCAGCCTCTGGAAAGC+GGG | + | chr2_4:3992644-3992663 | None:intergenic | 45.0% |
| ! | GAATATCAGCCTCTGGAAAG+CGG | + | chr2_4:3992645-3992664 | None:intergenic | 45.0% |
| TGCAGAGAAGGCTTCTTTAC+AGG | - | chr2_4:3992715-3992734 | Msa0309480:CDS | 45.0% | |
| GGAAATGCCATCTTGATCAC+CGG | + | chr2_4:3993043-3993062 | None:intergenic | 45.0% | |
| TCGTCAATTTGGGGAAACTC+TGG | + | chr2_4:3993373-3993392 | None:intergenic | 45.0% | |
| AGAGTTTCCCCAAATTGACG+AGG | - | chr2_4:3993372-3993391 | Msa0309480:intron | 45.0% | |
| !! | TAAGCAGCCTGTTCTGAAGT+GGG | - | chr2_4:3993423-3993442 | Msa0309480:intron | 45.0% |
| GAGAATAATATGGCATGGCC+TGG | - | chr2_4:3993445-3993464 | Msa0309480:CDS | 45.0% | |
| TCAGTAAGAGTGAGTTTGCC+AGG | + | chr2_4:3993466-3993485 | None:intergenic | 45.0% | |
| !! | TTTCTGATGTTCTAGGGAGC+TGG | - | chr2_4:3993684-3993703 | Msa0309480:intron | 45.0% |
| ! | TTCTAGGGAGCTGGCTTATT+GGG | - | chr2_4:3993693-3993712 | Msa0309480:intron | 45.0% |
| !! | TGATGGATTGCGAGTAGAGA+AGG | - | chr2_4:3993749-3993768 | Msa0309480:intron | 45.0% |
| CGAGTAGAGAAGGCAAAAGT+TGG | - | chr2_4:3993759-3993778 | Msa0309480:intron | 45.0% | |
| AAGGCAAAAGTTGGGCCTTT+AGG | - | chr2_4:3993768-3993787 | Msa0309480:intron | 45.0% | |
| AGGCAAAAGTTGGGCCTTTA+GGG | - | chr2_4:3993769-3993788 | Msa0309480:intron | 45.0% | |
| CACAAGTTCACGCATGAGTA+TGG | - | chr2_4:3994179-3994198 | Msa0309480:intron | 45.0% | |
| GAGTATGGACCTGATGAGTA+TGG | - | chr2_4:3994194-3994213 | Msa0309480:intron | 45.0% | |
| TTGCGAGCCTCGAAAACATT+AGG | + | chr2_4:3994221-3994240 | None:intergenic | 45.0% | |
| !! | AATGTTTTCGAGGCTCGCAA+AGG | - | chr2_4:3994221-3994240 | Msa0309480:intron | 45.0% |
| GCAACTTCCGCAAATGTTGA+AGG | + | chr2_4:3994298-3994317 | None:intergenic | 45.0% | |
| !!! | TCGATTTTCTGGCTGATAGC+GGG | + | chr2_4:3994444-3994463 | None:intergenic | 45.0% |
| GGATGAAATCTCCATCTTGG+GGG | - | chr2_4:3994534-3994553 | Msa0309480:CDS | 45.0% | |
| CAGTAATCATGTTCCTGTGC+AGG | - | chr2_4:3994895-3994914 | Msa0309480:intron | 45.0% | |
| GGAAATATTAGCTCCTGCAC+AGG | + | chr2_4:3994911-3994930 | None:intergenic | 45.0% | |
| GGAAAGACACAACAAGGAAG+TGG | + | chr2_4:3995270-3995289 | None:intergenic | 45.0% | |
| TCCAGTGATGCTGATGATCA+CGG | - | chr2_4:3995313-3995332 | Msa0309480:intron | 45.0% | |
| CTGTTGGAATGCTGACAATC+AGG | - | chr2_4:3995336-3995355 | Msa0309480:intron | 45.0% | |
| CATATTCTCAACGTCACGCA+TGG | + | chr2_4:3995465-3995484 | None:intergenic | 45.0% | |
| !! | CGAAACTTTTAAGAGAGCGG+TGG | - | chr2_4:3995811-3995830 | Msa0309480:intron | 45.0% |
| ! | TTACCCTTGCTTTGGTTTCC+TGG | + | chr2_4:3995936-3995955 | None:intergenic | 45.0% |
| AACCAAAGCAAGGGTAAGTC+CGG | - | chr2_4:3995939-3995958 | Msa0309480:CDS | 45.0% | |
| !!! | TTTTTTTTATTTCTTATTAT+TGG | - | chr2_4:3990344-3990363 | Msa0309480:CDS | 5.0% |
| !! | AAAACATAAATAAAATAATA+TGG | + | chr2_4:3993667-3993686 | None:intergenic | 5.0% |
| TTCAGCTCCTGCTATCAGCA+CGG | - | chr2_4:3991119-3991138 | Msa0309480:intron | 50.0% | |
| TAGCCTCAAGGCTCAAAGAG+TGG | + | chr2_4:3991179-3991198 | None:intergenic | 50.0% | |
| !! | TAGGGCTTTGGAGCTCAACA+GGG | + | chr2_4:3991209-3991228 | None:intergenic | 50.0% |
| ACTTCTCCGCTCGCAAAAAC+TGG | - | chr2_4:3991586-3991605 | Msa0309480:CDS | 50.0% | |
| !! | TGCAGGATGAGTGGATTGAC+TGG | - | chr2_4:3992246-3992265 | Msa0309480:intron | 50.0% |
| !! | GCAGGATGAGTGGATTGACT+GGG | - | chr2_4:3992247-3992266 | Msa0309480:intron | 50.0% |
| CGATGTTCATCCTTCTCTCC+AGG | - | chr2_4:3992377-3992396 | Msa0309480:CDS | 50.0% | |
| TATAGGATCCCGCTTTCCAG+AGG | - | chr2_4:3992633-3992652 | Msa0309480:intron | 50.0% | |
| CCTTCTCTGCATTGCTGGAA+AGG | + | chr2_4:3992706-3992725 | None:intergenic | 50.0% | |
| CCTTTCCAGCAATGCAGAGA+AGG | - | chr2_4:3992703-3992722 | Msa0309480:CDS | 50.0% | |
| AGAAGCCTTCTCTGCATTGC+TGG | + | chr2_4:3992711-3992730 | None:intergenic | 50.0% | |
| GCAGAGTAAACTTGTCACCG+AGG | - | chr2_4:3992939-3992958 | Msa0309480:intron | 50.0% | |
| GAGTAAACTTGTCACCGAGG+AGG | - | chr2_4:3992942-3992961 | Msa0309480:intron | 50.0% | |
| AAAGATTGTGCACTGTGGGG+CGG | + | chr2_4:3993008-3993027 | None:intergenic | 50.0% | |
| ATGGCATTTCCATGAGCACG+TGG | - | chr2_4:3993052-3993071 | Msa0309480:intron | 50.0% | |
| CAGAACAGGCTGCTTACTGT+TGG | + | chr2_4:3993419-3993438 | None:intergenic | 50.0% | |
| !! | GTAAGCAGCCTGTTCTGAAG+TGG | - | chr2_4:3993422-3993441 | Msa0309480:intron | 50.0% |
| !! | GTTCTAGGGAGCTGGCTTAT+TGG | - | chr2_4:3993692-3993711 | Msa0309480:intron | 50.0% |
| ! | TCTAGGGAGCTGGCTTATTG+GGG | - | chr2_4:3993694-3993713 | Msa0309480:intron | 50.0% |
| AACCACGTCCTCTGATGTTC+TGG | - | chr2_4:3993926-3993945 | Msa0309480:intron | 50.0% | |
| AACCAGAACATCAGAGGACG+TGG | + | chr2_4:3993931-3993950 | None:intergenic | 50.0% | |
| AAGTGGAGGACACATGCTGT+GGG | + | chr2_4:3993984-3994003 | None:intergenic | 50.0% | |
| AAAGTGGAGGACACATGCTG+TGG | + | chr2_4:3993985-3994004 | None:intergenic | 50.0% | |
| !! | TTGACTTGGGAGGTGAGATG+AGG | - | chr2_4:3994114-3994133 | Msa0309480:intron | 50.0% |
| GTGAGATGAGGAGGGATGTT+TGG | - | chr2_4:3994126-3994145 | Msa0309480:intron | 50.0% | |
| ! | GCAACGAGCAGTGCCATTAA+TGG | - | chr2_4:3994254-3994273 | Msa0309480:intron | 50.0% |
| TCCAGGCCCTTCAACATTTG+CGG | - | chr2_4:3994288-3994307 | Msa0309480:intron | 50.0% | |
| GAGAACTGAACGAGCTTGGT+AGG | + | chr2_4:3994329-3994348 | None:intergenic | 50.0% | |
| TGGGGAAGTCAACTGGTTAC+AGG | - | chr2_4:3994407-3994426 | Msa0309480:intron | 50.0% | |
| !! | TCGACGGAAGTGTCTACTTG+CGG | - | chr2_4:3994507-3994526 | Msa0309480:CDS | 50.0% |
| ! | GAAGTGTCTACTTGCGGAAG+TGG | - | chr2_4:3994513-3994532 | Msa0309480:CDS | 50.0% |
| ! | GAAGTACTAGACCCCCAAGA+TGG | + | chr2_4:3994548-3994567 | None:intergenic | 50.0% |
| CTGCTCTTTCAGTGAGCGTT+AGG | + | chr2_4:3994637-3994656 | None:intergenic | 50.0% | |
| !! | TGAAAAGCTAAGGCACTGGG+AGG | - | chr2_4:3994955-3994974 | Msa0309480:intron | 50.0% |
| AGAAACCCAACAGTCAGGTG+TGG | + | chr2_4:3994983-3995002 | None:intergenic | 50.0% | |
| CACCTGACTGTTGGGTTTCT+TGG | - | chr2_4:3994983-3995002 | Msa0309480:intron | 50.0% | |
| GTCCAAGAAACCCAACAGTC+AGG | + | chr2_4:3994988-3995007 | None:intergenic | 50.0% | |
| ATGCTGATGATCACGGCTGT+TGG | - | chr2_4:3995320-3995339 | Msa0309480:intron | 50.0% | |
| GCTGACAATCAGGAGCCTTA+AGG | - | chr2_4:3995346-3995365 | Msa0309480:intron | 50.0% | |
| ATCAGGAGCCTTAAGGAGCA+AGG | - | chr2_4:3995353-3995372 | Msa0309480:intron | 50.0% | |
| GTCTCTCAACCATTTCCCTC+CGG | + | chr2_4:3995788-3995807 | None:intergenic | 50.0% | |
| AAAACTGCTACTGGAGCAGC+AGG | + | chr2_4:3995846-3995865 | None:intergenic | 50.0% | |
| ACCACCAGGAAACCAAAGCA+AGG | - | chr2_4:3995929-3995948 | Msa0309480:CDS | 50.0% | |
| CCACCAGGAAACCAAAGCAA+GGG | - | chr2_4:3995930-3995949 | Msa0309480:CDS | 50.0% | |
| ATCCGGACTTACCCTTGCTT+TGG | + | chr2_4:3995944-3995963 | None:intergenic | 50.0% | |
| AGCTGAACGCACGACCTTCT+GGG | + | chr2_4:3991106-3991125 | None:intergenic | 55.0% | |
| TCAGCTCCTGCTATCAGCAC+GGG | - | chr2_4:3991120-3991139 | Msa0309480:intron | 55.0% | |
| TATCAGCACGGGGACCTCTT+TGG | - | chr2_4:3991131-3991150 | Msa0309480:intron | 55.0% | |
| ! | CAGGGTCTGAACTAGCCTCA+AGG | + | chr2_4:3991191-3991210 | None:intergenic | 55.0% |
| !! | GTAGGGCTTTGGAGCTCAAC+AGG | + | chr2_4:3991210-3991229 | None:intergenic | 55.0% |
| CGTATTGCTCCTGCAGTCTC+TGG | - | chr2_4:3992973-3992992 | Msa0309480:intron | 55.0% | |
| TCAACCACACCAGAGACTGC+AGG | + | chr2_4:3992985-3993004 | None:intergenic | 55.0% | |
| GCTCTTGCCGGTGATCAAGA+TGG | - | chr2_4:3993033-3993052 | Msa0309480:intron | 55.0% | |
| GTAAGCTAGCCACGTGCTCA+TGG | + | chr2_4:3993064-3993083 | None:intergenic | 55.0% | |
| ! | TAGGTCGAATTGGTGGGTGC+TGG | - | chr2_4:3994085-3994104 | Msa0309480:intron | 55.0% |
| ACTTGGGAGGTGAGATGAGG+AGG | - | chr2_4:3994117-3994136 | Msa0309480:intron | 55.0% | |
| CTTGGGAGGTGAGATGAGGA+GGG | - | chr2_4:3994118-3994137 | Msa0309480:intron | 55.0% | |
| TCCGCAAATGTTGAAGGGCC+TGG | + | chr2_4:3994292-3994311 | None:intergenic | 55.0% | |
| AGGAGCCACACCTGACTGTT+GGG | - | chr2_4:3994975-3994994 | Msa0309480:intron | 55.0% | |
| GCCGTGATCATCAGCATCAC+TGG | + | chr2_4:3995317-3995336 | None:intergenic | 55.0% | |
| TTAAGGAGCAAGGCCGCCTT+GGG | - | chr2_4:3995363-3995382 | Msa0309480:intron | 55.0% | |
| CGCCAAAAAATCGCCCAAGG+CGG | + | chr2_4:3995379-3995398 | None:intergenic | 55.0% | |
| !!! | CGCCTTGGGCGATTTTTTGG+CGG | - | chr2_4:3995377-3995396 | Msa0309480:intron | 55.0% |
| CTCCGCCAAAAAATCGCCCA+AGG | + | chr2_4:3995382-3995401 | None:intergenic | 55.0% | |
| ! | CCCTTGCTTTGGTTTCCTGG+TGG | + | chr2_4:3995933-3995952 | None:intergenic | 55.0% |
| GAGCTGAACGCACGACCTTC+TGG | + | chr2_4:3991107-3991126 | None:intergenic | 60.0% | |
| CAGCTCCTGCTATCAGCACG+GGG | - | chr2_4:3991121-3991140 | Msa0309480:intron | 60.0% | |
| AGCACGGGGACCTCTTTGGT+GGG | - | chr2_4:3991135-3991154 | Msa0309480:intron | 60.0% | |
| TGCTCCTGCAGTCTCTGGTG+TGG | - | chr2_4:3992978-3992997 | Msa0309480:intron | 60.0% | |
| GAGGAGCCACACCTGACTGT+TGG | - | chr2_4:3994974-3994993 | Msa0309480:intron | 60.0% | |
| CAAGGCGGCCTTGCTCCTTA+AGG | + | chr2_4:3995364-3995383 | None:intergenic | 60.0% | |
| CTTAAGGAGCAAGGCCGCCT+TGG | - | chr2_4:3995362-3995381 | Msa0309480:intron | 60.0% | |
| !!! | GGCCGCCTTGGGCGATTTTT+TGG | - | chr2_4:3995374-3995393 | Msa0309480:intron | 60.0% |
| TCACACGCGAGCTCGAGTTC+CGG | - | chr2_4:3995766-3995785 | Msa0309480:intron | 60.0% | |
| GCTCGAGTTCCGGAGGGAAA+TGG | - | chr2_4:3995776-3995795 | Msa0309480:intron | 60.0% | |
| ! | GAGGTCCCCGTGCTGATAGC+AGG | + | chr2_4:3991129-3991148 | None:intergenic | 65.0% |
| CAGCACGGGGACCTCTTTGG+TGG | - | chr2_4:3991134-3991153 | Msa0309480:intron | 65.0% | |
| ACGCGAGCTCGAGTTCCGGA+GGG | - | chr2_4:3995770-3995789 | Msa0309480:intron | 65.0% | |
| CACGCGAGCTCGAGTTCCGG+AGG | - | chr2_4:3995769-3995788 | Msa0309480:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 3989925 | 3996252 | 3989925 | ID=Msa0309480;Name=Msa0309480 |
| chr2_4 | mRNA | 3989925 | 3996252 | 3989925 | ID=Msa0309480-mRNA-1;Parent=Msa0309480;Name=Msa0309480-mRNA-1;_AED=0.06;_eAED=0.06;_QI=192|1|1|1|0.90|0.83|12|287|813 |
| chr2_4 | exon | 3989925 | 3990508 | 3989925 | ID=Msa0309480-mRNA-1:exon:1385;Parent=Msa0309480-mRNA-1 |
| chr2_4 | exon | 3990630 | 3990885 | 3990630 | ID=Msa0309480-mRNA-1:exon:1384;Parent=Msa0309480-mRNA-1 |
| chr2_4 | exon | 3991148 | 3991260 | 3991148 | ID=Msa0309480-mRNA-1:exon:1383;Parent=Msa0309480-mRNA-1 |
| chr2_4 | exon | 3991420 | 3992089 | 3991420 | ID=Msa0309480-mRNA-1:exon:1382;Parent=Msa0309480-mRNA-1 |
| chr2_4 | exon | 3992342 | 3992478 | 3992342 | ID=Msa0309480-mRNA-1:exon:1381;Parent=Msa0309480-mRNA-1 |
| chr2_4 | exon | 3992673 | 3992838 | 3992673 | ID=Msa0309480-mRNA-1:exon:1380;Parent=Msa0309480-mRNA-1 |
| chr2_4 | exon | 3993077 | 3993234 | 3993077 | ID=Msa0309480-mRNA-1:exon:1379;Parent=Msa0309480-mRNA-1 |
| chr2_4 | exon | 3993441 | 3993539 | 3993441 | ID=Msa0309480-mRNA-1:exon:1378;Parent=Msa0309480-mRNA-1 |
| chr2_4 | exon | 3993779 | 3993926 | 3993779 | ID=Msa0309480-mRNA-1:exon:1377;Parent=Msa0309480-mRNA-1 |
| chr2_4 | exon | 3994425 | 3994653 | 3994425 | ID=Msa0309480-mRNA-1:exon:1376;Parent=Msa0309480-mRNA-1 |
| chr2_4 | exon | 3995866 | 3996161 | 3995866 | ID=Msa0309480-mRNA-1:exon:1375;Parent=Msa0309480-mRNA-1 |
| chr2_4 | exon | 3996188 | 3996252 | 3996188 | ID=Msa0309480-mRNA-1:exon:1374;Parent=Msa0309480-mRNA-1 |
| chr2_4 | five_prime_UTR | 3996188 | 3996252 | 3996188 | ID=Msa0309480-mRNA-1:five_prime_utr;Parent=Msa0309480-mRNA-1 |
| chr2_4 | five_prime_UTR | 3996035 | 3996161 | 3996035 | ID=Msa0309480-mRNA-1:five_prime_utr;Parent=Msa0309480-mRNA-1 |
| chr2_4 | CDS | 3995866 | 3996034 | 3995866 | ID=Msa0309480-mRNA-1:cds;Parent=Msa0309480-mRNA-1 |
| chr2_4 | CDS | 3994425 | 3994653 | 3994425 | ID=Msa0309480-mRNA-1:cds;Parent=Msa0309480-mRNA-1 |
| chr2_4 | CDS | 3993779 | 3993926 | 3993779 | ID=Msa0309480-mRNA-1:cds;Parent=Msa0309480-mRNA-1 |
| chr2_4 | CDS | 3993441 | 3993539 | 3993441 | ID=Msa0309480-mRNA-1:cds;Parent=Msa0309480-mRNA-1 |
| chr2_4 | CDS | 3993077 | 3993234 | 3993077 | ID=Msa0309480-mRNA-1:cds;Parent=Msa0309480-mRNA-1 |
| chr2_4 | CDS | 3992673 | 3992838 | 3992673 | ID=Msa0309480-mRNA-1:cds;Parent=Msa0309480-mRNA-1 |
| chr2_4 | CDS | 3992342 | 3992478 | 3992342 | ID=Msa0309480-mRNA-1:cds;Parent=Msa0309480-mRNA-1 |
| chr2_4 | CDS | 3991420 | 3992089 | 3991420 | ID=Msa0309480-mRNA-1:cds;Parent=Msa0309480-mRNA-1 |
| chr2_4 | CDS | 3991148 | 3991260 | 3991148 | ID=Msa0309480-mRNA-1:cds;Parent=Msa0309480-mRNA-1 |
| chr2_4 | CDS | 3990630 | 3990885 | 3990630 | ID=Msa0309480-mRNA-1:cds;Parent=Msa0309480-mRNA-1 |
| chr2_4 | CDS | 3990212 | 3990508 | 3990212 | ID=Msa0309480-mRNA-1:cds;Parent=Msa0309480-mRNA-1 |
| chr2_4 | three_prime_UTR | 3989925 | 3990211 | 3989925 | ID=Msa0309480-mRNA-1:three_prime_utr;Parent=Msa0309480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
