Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452760 | G7IJX0 | 97.551 | 490 | 12 | 0 | 1 | 490 | 319 | 808 | 0.0 | 984 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189160 | Msa1452760 | 0.961469 | 9.723868e-120 | -8.615850e-47 |
| Msa0270740 | Msa1452760 | 0.858707 | 6.849965e-63 | -8.615850e-47 |
| Msa0309480 | Msa1452760 | 0.840568 | 8.040858e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452760 | MtrunA17_Chr2g0278061 | 97.551 | 490 | 12 | 0 | 1 | 490 | 319 | 808 | 0.0 | 984 |
| Msa1452760 | MtrunA17_Chr6g0484301 | 32.294 | 449 | 261 | 10 | 12 | 455 | 271 | 681 | 3.40e-56 | 198 |
| Msa1452760 | MtrunA17_Chr1g0212431 | 27.778 | 468 | 304 | 7 | 1 | 466 | 298 | 733 | 5.63e-51 | 184 |
| Msa1452760 | MtrunA17_Chr7g0253851 | 25.486 | 463 | 296 | 11 | 1 | 458 | 246 | 664 | 1.07e-29 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452760 | AT1G71240.1 | 63.071 | 482 | 173 | 3 | 6 | 483 | 344 | 824 | 0.0 | 611 |
| Msa1452760 | AT1G71240.2 | 63.071 | 482 | 173 | 3 | 6 | 483 | 343 | 823 | 0.0 | 611 |
| Msa1452760 | AT1G71240.3 | 63.399 | 306 | 107 | 3 | 6 | 307 | 343 | 647 | 6.08e-128 | 386 |
| Msa1452760 | AT3G18350.3 | 30.599 | 451 | 273 | 10 | 12 | 458 | 268 | 682 | 2.27e-53 | 191 |
| Msa1452760 | AT3G18350.1 | 30.599 | 451 | 273 | 10 | 12 | 458 | 268 | 682 | 2.27e-53 | 191 |
| Msa1452760 | AT3G18350.2 | 30.599 | 451 | 273 | 10 | 12 | 458 | 268 | 682 | 2.27e-53 | 191 |
| Msa1452760 | AT1G48840.1 | 29.688 | 448 | 273 | 7 | 12 | 455 | 269 | 678 | 7.21e-51 | 184 |
| Msa1452760 | AT5G23390.1 | 28.992 | 476 | 283 | 11 | 6 | 468 | 297 | 730 | 2.74e-45 | 169 |
| Msa1452760 | AT2G21720.2 | 24.348 | 460 | 307 | 9 | 1 | 457 | 310 | 731 | 2.21e-30 | 125 |
| Msa1452760 | AT2G21720.1 | 24.348 | 460 | 307 | 9 | 1 | 457 | 307 | 728 | 2.48e-30 | 125 |
Find 106 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTGACTGTTGGGTTTCT+TGG | 0.043925 | tig0034145:+1464 | Msa1452760:CDS |
| TTACCCTTGCTTTGGTTTCC+TGG | 0.185007 | tig0034145:-2416 | Msa1452760:intergenic |
| AAGGCAAAAGTTGGGCCTTT+AGG | 0.222763 | tig0034145:+249 | Msa1452760:CDS |
| TTCTAGGGAGCTGGCTTATT+GGG | 0.234930 | tig0034145:+174 | None:intergenic |
| AACTTTAGCTGTTAACTATT+GGG | 0.250174 | tig0034145:+869 | Msa1452760:CDS |
| TCTGCTGTTTCTATTTCTTC+TGG | 0.255306 | tig0034145:+288 | Msa1452760:CDS |
| AAACTTTAGCTGTTAACTAT+TGG | 0.257963 | tig0034145:+868 | Msa1452760:CDS |
| GTTCTAGGGAGCTGGCTTAT+TGG | 0.295279 | tig0034145:+173 | None:intergenic |
| CACAAGTTCACGCATGAGTA+TGG | 0.303668 | tig0034145:+660 | Msa1452760:CDS |
| AGGCAAAAGTTGGGCCTTTA+GGG | 0.316742 | tig0034145:+250 | Msa1452760:CDS |
| GAGTCTAGCAATACCATTAA+TGG | 0.319435 | tig0034145:-748 | Msa1452760:intergenic |
| GCAACGAGCAGTGCCATTAA+TGG | 0.329071 | tig0034145:+735 | Msa1452760:CDS |
| AATAGTTAACAGCTAAAGTT+TGG | 0.330311 | tig0034145:-866 | Msa1452760:intergenic |
| GTGAGATGAGGAGGGATGTT+TGG | 0.340477 | tig0034145:+607 | Msa1452760:CDS |
| CATTCATACTTAGGTCGAAT+TGG | 0.347539 | tig0034145:+556 | Msa1452760:intron |
| TGGGGAAGTCAACTGGTTAC+AGG | 0.349503 | tig0034145:+888 | Msa1452760:CDS |
| AACAAGCAAACAAAAGTATC+AGG | 0.371038 | tig0034145:+1142 | Msa1452760:CDS |
| TTGCGAGCCTCGAAAACATT+AGG | 0.375872 | tig0034145:-699 | Msa1452760:intergenic |
| ATCCGGACTTACCCTTGCTT+TGG | 0.379147 | tig0034145:-2424 | Msa1452760:intergenic |
| TTTGTTCTCAAGTTCCTTCA+AGG | 0.390824 | tig0034145:-2384 | Msa1452760:intergenic |
| GTGGATGAAATCTCCATCTT+GGG | 0.392487 | tig0034145:+1013 | Msa1452760:CDS |
| GGTGCTGGAATTTATTGACT+TGG | 0.398798 | tig0034145:+581 | Msa1452760:CDS |
| AGGAGCCACACCTGACTGTT+GGG | 0.401607 | tig0034145:+1456 | Msa1452760:CDS |
| CTGCTCTTTCAGTGAGCGTT+AGG | 0.402602 | tig0034145:-1115 | Msa1452760:intergenic |
| TCTGTAAGCAACCCTGAAAA+TGG | 0.404792 | tig0034145:-2454 | Msa1452760:intergenic |
| TTAAGGAGCAAGGCCGCCTT+GGG | 0.405878 | tig0034145:+1846 | Msa1452760:CDS |
| AGATTGGATCTTACATATGA+TGG | 0.406083 | tig0034145:+213 | Msa1452760:CDS |
| CTTAAGGAGCAAGGCCGCCT+TGG | 0.406837 | tig0034145:+1845 | Msa1452760:CDS |
| CAAGGCGGCCTTGCTCCTTA+AGG | 0.408441 | tig0034145:-1844 | Msa1452760:intergenic |
| CTGTTGGAATGCTGACAATC+AGG | 0.413827 | tig0034145:+1819 | Msa1452760:CDS |
| TTTCTGATGTTCTAGGGAGC+TGG | 0.418060 | tig0034145:+165 | None:intergenic |
| TAGATCAGAAGTTTCCTTGA+AGG | 0.419759 | tig0034145:+2370 | Msa1452760:CDS |
| TTGCTGTGCTGATGTTAACT+TGG | 0.422067 | tig0034145:+2165 | Msa1452760:CDS |
| TAACTATTGGGGAAGTCAAC+TGG | 0.425585 | tig0034145:+881 | Msa1452760:CDS |
| TCAAAAGGTAAAACTGCTAC+TGG | 0.437504 | tig0034145:-2335 | Msa1452760:intergenic |
| TGGAAGAACACTTCAACAAA+AGG | 0.440603 | tig0034145:+1059 | Msa1452760:CDS |
| GAGTATGGACCTGATGAGTA+TGG | 0.441232 | tig0034145:+675 | Msa1452760:CDS |
| AGTGGATGAAATCTCCATCT+TGG | 0.442947 | tig0034145:+1012 | Msa1452760:CDS |
| CGAGTAGAGAAGGCAAAAGT+TGG | 0.445116 | tig0034145:+240 | Msa1452760:CDS |
| GAATAAGAGAGCCATGAGAT+TGG | 0.456321 | tig0034145:+197 | Msa1452760:CDS |
| GCTCGAGTTCCGGAGGGAAA+TGG | 0.457901 | tig0034145:+2259 | Msa1452760:CDS |
| TCCGCAAATGTTGAAGGGCC+TGG | 0.459300 | tig0034145:-770 | Msa1452760:intergenic |
| GCCGTGATCATCAGCATCAC+TGG | 0.459913 | tig0034145:-1797 | Msa1452760:intergenic |
| TTTCAGTGTTGCAGCATCAA+TGG | 0.463847 | tig0034145:-1186 | Msa1452760:intergenic |
| GTGCTGGAATTTATTGACTT+GGG | 0.465419 | tig0034145:+582 | Msa1452760:CDS |
| CTGAAAATGGTATCACTATC+CGG | 0.470032 | tig0034145:-2441 | Msa1452760:intergenic |
| GAAGTGTCTACTTGCGGAAG+TGG | 0.475480 | tig0034145:+994 | Msa1452760:CDS |
| AAGGAAAGAATGTACTTGAA+TGG | 0.477040 | tig0034145:-2209 | Msa1452760:intergenic |
| TCACACGCGAGCTCGAGTTC+CGG | 0.478210 | tig0034145:+2249 | Msa1452760:CDS |
| AACCAAAGCAAGGGTAAGTC+CGG | 0.478888 | tig0034145:+2422 | Msa1452760:CDS |
| TCCAGGCCCTTCAACATTTG+CGG | 0.483948 | tig0034145:+769 | Msa1452760:CDS |
| TGCTGTGCTGATGTTAACTT+GGG | 0.486580 | tig0034145:+2166 | Msa1452760:CDS |
| GCAACTTCCGCAAATGTTGA+AGG | 0.489333 | tig0034145:-776 | Msa1452760:intergenic |
| GTCCAAGAAACCCAACAGTC+AGG | 0.490129 | tig0034145:-1466 | Msa1452760:intergenic |
| ACATTAGGTCCATACTCATC+AGG | 0.492111 | tig0034145:-684 | Msa1452760:intergenic |
| GAGGAGCCACACCTGACTGT+TGG | 0.496915 | tig0034145:+1455 | Msa1452760:CDS |
| TAGGTCGAATTGGTGGGTGC+TGG | 0.499409 | tig0034145:+566 | Msa1452760:intron |
| ACTTCAACCATCTTCAATGT+TGG | 0.500212 | tig0034145:+2627 | Msa1452760:three_prime_UTR |
| TCATACTTAGGTCGAATTGG+TGG | 0.514687 | tig0034145:+559 | Msa1452760:intron |
| GCTGACAATCAGGAGCCTTA+AGG | 0.517159 | tig0034145:+1829 | Msa1452760:CDS |
| GTCTCTCAACCATTTCCCTC+CGG | 0.518293 | tig0034145:-2268 | Msa1452760:intergenic |
| CAAACAAAAGTATCAGGTTG+TGG | 0.518733 | tig0034145:+1148 | Msa1452760:CDS |
| ACTTGGGAGGTGAGATGAGG+AGG | 0.526000 | tig0034145:+598 | Msa1452760:CDS |
| TTTACTTTCTGGAAATCCAC+AGG | 0.530087 | tig0034145:+2009 | Msa1452760:CDS |
| ATATGAGAACTGAACGAGCT+TGG | 0.533561 | tig0034145:-811 | Msa1452760:intergenic |
| TGGAGGACAATATCACCATT+CGG | 0.539224 | tig0034145:-846 | Msa1452760:intergenic |
| ATGAGAACCAACATTGAAGA+TGG | 0.542342 | tig0034145:-2634 | Msa1452760:intergenic |
| ACTTTGAAAAGCTAAGGCAC+TGG | 0.543129 | tig0034145:+1432 | Msa1452760:CDS |
| GAGAACTGAACGAGCTTGGT+AGG | 0.548947 | tig0034145:-807 | Msa1452760:intergenic |
| CACGCGAGCTCGAGTTCCGG+AGG | 0.549944 | tig0034145:+2252 | Msa1452760:CDS |
| TGATGGATTGCGAGTAGAGA+AGG | 0.549980 | tig0034145:+230 | Msa1452760:CDS |
| AGTTAACAGCTAAAGTTTGG+AGG | 0.552405 | tig0034145:-863 | Msa1452760:intergenic |
| ATGCTGATGATCACGGCTGT+TGG | 0.555284 | tig0034145:+1803 | Msa1452760:CDS |
| TTGACTTGGGAGGTGAGATG+AGG | 0.556699 | tig0034145:+595 | Msa1452760:CDS |
| TAATGGTATTGCTAGACTCC+AGG | 0.558014 | tig0034145:+752 | Msa1452760:CDS |
| CATACTTAGGTCGAATTGGT+GGG | 0.558496 | tig0034145:+560 | Msa1452760:intron |
| ACTTTAGCTGTTAACTATTG+GGG | 0.561658 | tig0034145:+870 | Msa1452760:CDS |
| GAATGGAACAATGAAGAGAA+TGG | 0.562748 | tig0034145:-2192 | Msa1452760:intergenic |
| ATATGAAGAATCCAAAGAGC+TGG | 0.562753 | tig0034145:-2550 | Msa1452760:intergenic |
| ATTGATGCTGCAACACTGAA+AGG | 0.562919 | tig0034145:+1188 | Msa1452760:CDS |
| TCCAGTGATGCTGATGATCA+CGG | 0.563212 | tig0034145:+1796 | Msa1452760:CDS |
| AAAACTGCTACTGGAGCAGC+AGG | 0.563294 | tig0034145:-2326 | Msa1452760:intergenic |
| CCCTTGCTTTGGTTTCCTGG+TGG | 0.568291 | tig0034145:-2413 | Msa1452760:intergenic |
| CTTTGAAAAGCTAAGGCACT+GGG | 0.569092 | tig0034145:+1433 | Msa1452760:CDS |
| GAACATGTCGAAGAGAAGAA+AGG | 0.570428 | tig0034145:-2228 | Msa1452760:intergenic |
| CTTGGGAGGTGAGATGAGGA+GGG | 0.580323 | tig0034145:+599 | Msa1452760:CDS |
| TCTAGGGAGCTGGCTTATTG+GGG | 0.581399 | tig0034145:+175 | None:intergenic |
| GAGTAGAGAAGGCAAAAGTT+GGG | 0.585980 | tig0034145:+241 | Msa1452760:CDS |
| CATATTCTCAACGTCACGCA+TGG | 0.590696 | tig0034145:-1945 | Msa1452760:intergenic |
| ATATGTAAGATCCAATCTCA+TGG | 0.594666 | tig0034145:-208 | Msa1452760:intergenic |
| ATCAGGAGCCTTAAGGAGCA+AGG | 0.597787 | tig0034145:+1836 | Msa1452760:CDS |
| TGGATGAAATCTCCATCTTG+GGG | 0.602032 | tig0034145:+1014 | Msa1452760:CDS |
| ACCACCAGGAAACCAAAGCA+AGG | 0.604338 | tig0034145:+2412 | Msa1452760:CDS |
| AGATGGTTGAAGTTAATGAG+AGG | 0.609992 | tig0034145:-2617 | Msa1452760:intergenic |
| CAACTTCCGCAAATGTTGAA+GGG | 0.611672 | tig0034145:-775 | Msa1452760:intergenic |
| CCACCAGGAAACCAAAGCAA+GGG | 0.634475 | tig0034145:+2413 | Msa1452760:CDS |
| TATTTACAGAATGCACCGAA+TGG | 0.642261 | tig0034145:+831 | Msa1452760:CDS |
| CTGGAATTTATTGACTTGGG+AGG | 0.644215 | tig0034145:+585 | Msa1452760:CDS |
| ACGCGAGCTCGAGTTCCGGA+GGG | 0.658637 | tig0034145:+2253 | Msa1452760:CDS |
| GTTGAGTAAGAATCATGTTG+TGG | 0.669931 | tig0034145:+1088 | Msa1452760:CDS |
| AGAAACCCAACAGTCAGGTG+TGG | 0.672520 | tig0034145:-1461 | Msa1452760:intergenic |
| TCGACGGAAGTGTCTACTTG+CGG | 0.673498 | tig0034145:+988 | Msa1452760:CDS |
| GGATGAAATCTCCATCTTGG+GGG | 0.678739 | tig0034145:+1015 | Msa1452760:CDS |
| GAGAACAAATCAAAACCACC+AGG | 0.683386 | tig0034145:+2398 | Msa1452760:CDS |
| CCTTTGTCAGATAACAACTG+AGG | 0.688692 | tig0034145:+2142 | Msa1452760:intron |
| TGAAAAGCTAAGGCACTGGG+AGG | 0.732429 | tig0034145:+1436 | Msa1452760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGAAATATAATTGATCA+AGG | - | tig0034145:1311-1330 | Msa1452760:intergenic | 15.0% |
| !!! | AATATCTTTTTTCTTTTGAT+TGG | + | tig0034145:1328-1347 | Msa1452760:intron | 15.0% |
| !!! | ATATCTTTTTTCTTTTGATT+GGG | + | tig0034145:1329-1348 | Msa1452760:intron | 15.0% |
| !!! | TTTCCTATACATTAATTTTT+AGG | + | tig0034145:1489-1508 | Msa1452760:CDS | 15.0% |
| !! | TTACCTAAAAATTAATGTAT+AGG | - | tig0034145:1495-1514 | Msa1452760:intergenic | 15.0% |
| !!! | TTTTTTTTCTGTAAACTTAT+TGG | + | tig0034145:1610-1629 | Msa1452760:intron | 15.0% |
| !!! | TTTTTTTCTGTAAACTTATT+GGG | + | tig0034145:1611-1630 | Msa1452760:intron | 15.0% |
| !! | ATATTATATTATAATACCTG+TGG | - | tig0034145:2028-2047 | Msa1452760:intergenic | 15.0% |
| !! | TTATAATATAATATCATGCA+TGG | + | tig0034145:2034-2053 | Msa1452760:intron | 15.0% |
| !! | ATTTAGTTATAACTTACATT+CGG | + | tig0034145:2067-2086 | Msa1452760:intron | 15.0% |
| !!! | TTTTTGCTGTAAATAAAAAT+AGG | + | tig0034145:2505-2524 | Msa1452760:three_prime_UTR | 15.0% |
| !!! | TTATTTGAGTTAACATTCAT+CGG | + | tig0034145:430-449 | Msa1452760:intron | 20.0% |
| !!! | TTTTACTTACATTCATACTT+AGG | + | tig0034145:547-566 | Msa1452760:intron | 20.0% |
| !!! | AATTAGTTTTCTCATATTCA+AGG | + | tig0034145:1635-1654 | Msa1452760:intron | 20.0% |
| !!! | ACTTGTTGAAAATGTTAATT+TGG | + | tig0034145:1692-1711 | Msa1452760:intron | 20.0% |
| !! | CTTGTTGAAAATGTTAATTT+GGG | + | tig0034145:1693-1712 | Msa1452760:intron | 20.0% |
| !!! | ATCTTTTGTATTGTATTTGA+CGG | - | tig0034145:1908-1927 | Msa1452760:intergenic | 20.0% |
| !!! | AATTCTAAGACAGAAAAAAC+TGG | - | tig0034145:348-367 | Msa1452760:intergenic | 25.0% |
| !!! | TTTTTTCTGTCTTAGAATTG+TGG | + | tig0034145:349-368 | Msa1452760:intron | 25.0% |
| ! | AATAGTTAACAGCTAAAGTT+TGG | - | tig0034145:869-888 | Msa1452760:intergenic | 25.0% |
| ! | AAACTTTAGCTGTTAACTAT+TGG | + | tig0034145:868-887 | Msa1452760:CDS | 25.0% |
| ! | AACTTTAGCTGTTAACTATT+GGG | + | tig0034145:869-888 | Msa1452760:CDS | 25.0% |
| ! | TTAAAAAGATCAATGTTGCT+TGG | - | tig0034145:1218-1237 | Msa1452760:intergenic | 25.0% |
| !! | AAGCAACATTGATCTTTTTA+AGG | + | tig0034145:1217-1236 | Msa1452760:CDS | 25.0% |
| !!! | AACATTGATCTTTTTAAGGT+TGG | + | tig0034145:1221-1240 | Msa1452760:intron | 25.0% |
| ! | ATTAAAGGAACACAAAATCA+AGG | - | tig0034145:1255-1274 | Msa1452760:intergenic | 25.0% |
| ! | GAAATTGTGAGAATCATTAA+AGG | - | tig0034145:1270-1289 | Msa1452760:intergenic | 25.0% |
| !! | AAGGTTTTCTCAATAGTTAA+AGG | - | tig0034145:1292-1311 | Msa1452760:intergenic | 25.0% |
| ! | ATTGGGTTTCAAAAGTAATA+TGG | + | tig0034145:1346-1365 | Msa1452760:intron | 25.0% |
| !! | TTCAAAGTTTTTGACAGTTA+AGG | - | tig0034145:1420-1439 | Msa1452760:intergenic | 25.0% |
| !! | TCAAAAACTTTGAAAAGCTA+AGG | + | tig0034145:1426-1445 | Msa1452760:CDS | 25.0% |
| ! | AAATAATCATCTTCAGACAA+CGG | - | tig0034145:1545-1564 | Msa1452760:intergenic | 25.0% |
| ! | TTTCAACAAGTATGTTCTAT+GGG | - | tig0034145:1683-1702 | Msa1452760:intergenic | 25.0% |
| !! | TTTTCAACAAGTATGTTCTA+TGG | - | tig0034145:1684-1703 | Msa1452760:intergenic | 25.0% |
| !! | ATACGTTCAATTTTACTTTC+TGG | + | tig0034145:1998-2017 | Msa1452760:CDS | 25.0% |
| ATATGTAAGATCCAATCTCA+TGG | - | tig0034145:211-230 | Msa1452760:intergenic | 30.0% | |
| AGATTGGATCTTACATATGA+TGG | + | tig0034145:213-232 | Msa1452760:CDS | 30.0% | |
| ACTTTAGCTGTTAACTATTG+GGG | + | tig0034145:870-889 | Msa1452760:CDS | 30.0% | |
| !!! | CTAGTACTTCTACTAGTTTT+TGG | + | tig0034145:1039-1058 | Msa1452760:CDS | 30.0% |
| !! | AACAAGCAAACAAAAGTATC+AGG | + | tig0034145:1142-1161 | Msa1452760:CDS | 30.0% |
| ! | TTTTTGACAGTTAAGGTGAT+AGG | - | tig0034145:1413-1432 | Msa1452760:intergenic | 30.0% |
| ! | TTTTGTATTGTATTTGACGG+TGG | - | tig0034145:1905-1924 | Msa1452760:intergenic | 30.0% |
| AAGGAAAGAATGTACTTGAA+TGG | - | tig0034145:2212-2231 | Msa1452760:intergenic | 30.0% | |
| ! | CTAGATTCTTCGTTTTCAAA+AGG | - | tig0034145:2353-2372 | Msa1452760:intergenic | 30.0% |
| !! | TCTGCTGTTTCTATTTCTTC+TGG | + | tig0034145:288-307 | Msa1452760:CDS | 35.0% |
| TCAAATAACCAGAACATCAG+AGG | - | tig0034145:418-437 | Msa1452760:intergenic | 35.0% | |
| CAAAAAGCAACAGAGAAAAG+TGG | - | tig0034145:482-501 | Msa1452760:intergenic | 35.0% | |
| CATTCATACTTAGGTCGAAT+TGG | + | tig0034145:556-575 | Msa1452760:intron | 35.0% | |
| !! | GTGCTGGAATTTATTGACTT+GGG | + | tig0034145:582-601 | Msa1452760:CDS | 35.0% |
| GAGTCTAGCAATACCATTAA+TGG | - | tig0034145:751-770 | Msa1452760:intergenic | 35.0% | |
| TATTTACAGAATGCACCGAA+TGG | + | tig0034145:831-850 | Msa1452760:CDS | 35.0% | |
| AGTTAACAGCTAAAGTTTGG+AGG | - | tig0034145:866-885 | Msa1452760:intergenic | 35.0% | |
| ! | TCGTTAGAAGTTCGATTTTC+TGG | - | tig0034145:936-955 | Msa1452760:intergenic | 35.0% |
| !! | AACCATGTTTTTGACATCGA+CGG | + | tig0034145:972-991 | Msa1452760:CDS | 35.0% |
| TGGAAGAACACTTCAACAAA+AGG | + | tig0034145:1059-1078 | Msa1452760:CDS | 35.0% | |
| GTTGAGTAAGAATCATGTTG+TGG | + | tig0034145:1088-1107 | Msa1452760:CDS | 35.0% | |
| !! | CAAACAAAAGTATCAGGTTG+TGG | + | tig0034145:1148-1167 | Msa1452760:CDS | 35.0% |
| GATATATGAGAGCAAGTTTC+TGG | - | tig0034145:1774-1793 | Msa1452760:intergenic | 35.0% | |
| ! | TTTACTTTCTGGAAATCCAC+AGG | + | tig0034145:2009-2028 | Msa1452760:CDS | 35.0% |
| GTTGTTATCTGACAAAGGAT+TGG | - | tig0034145:2140-2159 | Msa1452760:intergenic | 35.0% | |
| GAATGGAACAATGAAGAGAA+TGG | - | tig0034145:2195-2214 | Msa1452760:intergenic | 35.0% | |
| !! | TCACGAAACTTTTAAGAGAG+CGG | + | tig0034145:2291-2310 | Msa1452760:CDS | 35.0% |
| TCAAAAGGTAAAACTGCTAC+TGG | - | tig0034145:2338-2357 | Msa1452760:intergenic | 35.0% | |
| TAGATCAGAAGTTTCCTTGA+AGG | + | tig0034145:2370-2389 | Msa1452760:CDS | 35.0% | |
| TTTGTTCTCAAGTTCCTTCA+AGG | - | tig0034145:2387-2406 | Msa1452760:intergenic | 35.0% | |
| CTGAAAATGGTATCACTATC+CGG | - | tig0034145:2444-2463 | Msa1452760:intergenic | 35.0% | |
| ! | GGATAGTGATACCATTTTCA+GGG | + | tig0034145:2443-2462 | Msa1452760:exon | 35.0% |
| ATATGAAGAATCCAAAGAGC+TGG | - | tig0034145:2553-2572 | Msa1452760:intergenic | 35.0% | |
| AGATGGTTGAAGTTAATGAG+AGG | - | tig0034145:2620-2639 | Msa1452760:intergenic | 35.0% | |
| ACTTCAACCATCTTCAATGT+TGG | + | tig0034145:2627-2646 | Msa1452760:three_prime_UTR | 35.0% | |
| ATGAGAACCAACATTGAAGA+TGG | - | tig0034145:2637-2656 | Msa1452760:intergenic | 35.0% | |
| GAATAAGAGAGCCATGAGAT+TGG | + | tig0034145:197-216 | Msa1452760:CDS | 40.0% | |
| GAGTAGAGAAGGCAAAAGTT+GGG | + | tig0034145:241-260 | Msa1452760:CDS | 40.0% | |
| TCAAAAAGCGAAGACCCTAA+AGG | - | tig0034145:267-286 | Msa1452760:intergenic | 40.0% | |
| AAAGCAACAGAGAAAAGTGG+AGG | - | tig0034145:479-498 | Msa1452760:intergenic | 40.0% | |
| TCATACTTAGGTCGAATTGG+TGG | + | tig0034145:559-578 | Msa1452760:intron | 40.0% | |
| CATACTTAGGTCGAATTGGT+GGG | + | tig0034145:560-579 | Msa1452760:intron | 40.0% | |
| ! | GGTGCTGGAATTTATTGACT+TGG | + | tig0034145:581-600 | Msa1452760:CDS | 40.0% |
| !! | CTGGAATTTATTGACTTGGG+AGG | + | tig0034145:585-604 | Msa1452760:CDS | 40.0% |
| ACATTAGGTCCATACTCATC+AGG | - | tig0034145:687-706 | Msa1452760:intergenic | 40.0% | |
| ! | GTATGGACCTAATGTTTTCG+AGG | + | tig0034145:692-711 | Msa1452760:CDS | 40.0% |
| TAATGGTATTGCTAGACTCC+AGG | + | tig0034145:752-771 | Msa1452760:CDS | 40.0% | |
| CAACTTCCGCAAATGTTGAA+GGG | - | tig0034145:778-797 | Msa1452760:intergenic | 40.0% | |
| ATATGAGAACTGAACGAGCT+TGG | - | tig0034145:814-833 | Msa1452760:intergenic | 40.0% | |
| TGGAGGACAATATCACCATT+CGG | - | tig0034145:849-868 | Msa1452760:intergenic | 40.0% | |
| TAACTATTGGGGAAGTCAAC+TGG | + | tig0034145:881-900 | Msa1452760:CDS | 40.0% | |
| !!! | TTCGATTTTCTGGCTGATAG+CGG | - | tig0034145:926-945 | Msa1452760:intergenic | 40.0% |
| TTCCGTCGATGTCAAAAACA+TGG | - | tig0034145:977-996 | Msa1452760:intergenic | 40.0% | |
| AGTGGATGAAATCTCCATCT+TGG | + | tig0034145:1012-1031 | Msa1452760:CDS | 40.0% | |
| GTGGATGAAATCTCCATCTT+GGG | + | tig0034145:1013-1032 | Msa1452760:CDS | 40.0% | |
| TGGATGAAATCTCCATCTTG+GGG | + | tig0034145:1014-1033 | Msa1452760:CDS | 40.0% | |
| TTTCAGTGTTGCAGCATCAA+TGG | - | tig0034145:1189-1208 | Msa1452760:intergenic | 40.0% | |
| ATTGATGCTGCAACACTGAA+AGG | + | tig0034145:1188-1207 | Msa1452760:CDS | 40.0% | |
| ! | ACTTTGAAAAGCTAAGGCAC+TGG | + | tig0034145:1432-1451 | Msa1452760:CDS | 40.0% |
| ! | CTTTGAAAAGCTAAGGCACT+GGG | + | tig0034145:1433-1452 | Msa1452760:CDS | 40.0% |
| CGGCAGAACAAAGAAAAATG+AGG | - | tig0034145:1525-1544 | Msa1452760:intergenic | 40.0% | |
| ! | GTTTCTGGAAAGACACAACA+AGG | - | tig0034145:1759-1778 | Msa1452760:intergenic | 40.0% |
| CCTCAGTTGTTATCTGACAA+AGG | - | tig0034145:2145-2164 | Msa1452760:intergenic | 40.0% | |
| CCTTTGTCAGATAACAACTG+AGG | + | tig0034145:2142-2161 | Msa1452760:intron | 40.0% | |
| ! | TTGCTGTGCTGATGTTAACT+TGG | + | tig0034145:2165-2184 | Msa1452760:CDS | 40.0% |
| ! | TGCTGTGCTGATGTTAACTT+GGG | + | tig0034145:2166-2185 | Msa1452760:CDS | 40.0% |
| GAACATGTCGAAGAGAAGAA+AGG | - | tig0034145:2231-2250 | Msa1452760:intergenic | 40.0% | |
| GAGAACAAATCAAAACCACC+AGG | + | tig0034145:2398-2417 | Msa1452760:CDS | 40.0% | |
| ! | CGGATAGTGATACCATTTTC+AGG | + | tig0034145:2442-2461 | Msa1452760:exon | 40.0% |
| TCTGTAAGCAACCCTGAAAA+TGG | - | tig0034145:2457-2476 | Msa1452760:intergenic | 40.0% | |
| !! | CTAGCTTTTAACCAGCTCTT+TGG | + | tig0034145:2539-2558 | Msa1452760:three_prime_UTR | 40.0% |
| !! | TGATGGATTGCGAGTAGAGA+AGG | + | tig0034145:230-249 | Msa1452760:CDS | 45.0% |
| CGAGTAGAGAAGGCAAAAGT+TGG | + | tig0034145:240-259 | Msa1452760:CDS | 45.0% | |
| AAGGCAAAAGTTGGGCCTTT+AGG | + | tig0034145:249-268 | Msa1452760:CDS | 45.0% | |
| AGGCAAAAGTTGGGCCTTTA+GGG | + | tig0034145:250-269 | Msa1452760:CDS | 45.0% | |
| CACAAGTTCACGCATGAGTA+TGG | + | tig0034145:660-679 | Msa1452760:CDS | 45.0% | |
| GAGTATGGACCTGATGAGTA+TGG | + | tig0034145:675-694 | Msa1452760:CDS | 45.0% | |
| TTGCGAGCCTCGAAAACATT+AGG | - | tig0034145:702-721 | Msa1452760:intergenic | 45.0% | |
| !! | AATGTTTTCGAGGCTCGCAA+AGG | + | tig0034145:702-721 | Msa1452760:CDS | 45.0% |
| GCAACTTCCGCAAATGTTGA+AGG | - | tig0034145:779-798 | Msa1452760:intergenic | 45.0% | |
| !!! | TCGATTTTCTGGCTGATAGC+GGG | - | tig0034145:925-944 | Msa1452760:intergenic | 45.0% |
| GGATGAAATCTCCATCTTGG+GGG | + | tig0034145:1015-1034 | Msa1452760:CDS | 45.0% | |
| CAGTAATCATGTTCCTGTGC+AGG | + | tig0034145:1376-1395 | Msa1452760:intron | 45.0% | |
| GGAAATATTAGCTCCTGCAC+AGG | - | tig0034145:1392-1411 | Msa1452760:intergenic | 45.0% | |
| GGAAAGACACAACAAGGAAG+TGG | - | tig0034145:1753-1772 | Msa1452760:intergenic | 45.0% | |
| TCCAGTGATGCTGATGATCA+CGG | + | tig0034145:1796-1815 | Msa1452760:CDS | 45.0% | |
| CTGTTGGAATGCTGACAATC+AGG | + | tig0034145:1819-1838 | Msa1452760:CDS | 45.0% | |
| CATATTCTCAACGTCACGCA+TGG | - | tig0034145:1948-1967 | Msa1452760:intergenic | 45.0% | |
| !! | CGAAACTTTTAAGAGAGCGG+TGG | + | tig0034145:2294-2313 | Msa1452760:CDS | 45.0% |
| ! | TTACCCTTGCTTTGGTTTCC+TGG | - | tig0034145:2419-2438 | Msa1452760:intergenic | 45.0% |
| AACCAAAGCAAGGGTAAGTC+CGG | + | tig0034145:2422-2441 | Msa1452760:CDS | 45.0% | |
| AACCACGTCCTCTGATGTTC+TGG | + | tig0034145:407-426 | Msa1452760:intron | 50.0% | |
| AACCAGAACATCAGAGGACG+TGG | - | tig0034145:412-431 | Msa1452760:intergenic | 50.0% | |
| AAGTGGAGGACACATGCTGT+GGG | - | tig0034145:465-484 | Msa1452760:intergenic | 50.0% | |
| AAAGTGGAGGACACATGCTG+TGG | - | tig0034145:466-485 | Msa1452760:intergenic | 50.0% | |
| !! | TTGACTTGGGAGGTGAGATG+AGG | + | tig0034145:595-614 | Msa1452760:CDS | 50.0% |
| GTGAGATGAGGAGGGATGTT+TGG | + | tig0034145:607-626 | Msa1452760:CDS | 50.0% | |
| ! | GCAACGAGCAGTGCCATTAA+TGG | + | tig0034145:735-754 | Msa1452760:CDS | 50.0% |
| TCCAGGCCCTTCAACATTTG+CGG | + | tig0034145:769-788 | Msa1452760:CDS | 50.0% | |
| GAGAACTGAACGAGCTTGGT+AGG | - | tig0034145:810-829 | Msa1452760:intergenic | 50.0% | |
| TGGGGAAGTCAACTGGTTAC+AGG | + | tig0034145:888-907 | Msa1452760:CDS | 50.0% | |
| !! | TCGACGGAAGTGTCTACTTG+CGG | + | tig0034145:988-1007 | Msa1452760:CDS | 50.0% |
| ! | GAAGTGTCTACTTGCGGAAG+TGG | + | tig0034145:994-1013 | Msa1452760:CDS | 50.0% |
| ! | GAAGTACTAGACCCCCAAGA+TGG | - | tig0034145:1029-1048 | Msa1452760:intergenic | 50.0% |
| CTGCTCTTTCAGTGAGCGTT+AGG | - | tig0034145:1118-1137 | Msa1452760:intergenic | 50.0% | |
| !! | TGAAAAGCTAAGGCACTGGG+AGG | + | tig0034145:1436-1455 | Msa1452760:CDS | 50.0% |
| AGAAACCCAACAGTCAGGTG+TGG | - | tig0034145:1464-1483 | Msa1452760:intergenic | 50.0% | |
| CACCTGACTGTTGGGTTTCT+TGG | + | tig0034145:1464-1483 | Msa1452760:CDS | 50.0% | |
| GTCCAAGAAACCCAACAGTC+AGG | - | tig0034145:1469-1488 | Msa1452760:intergenic | 50.0% | |
| ATGCTGATGATCACGGCTGT+TGG | + | tig0034145:1803-1822 | Msa1452760:CDS | 50.0% | |
| GCTGACAATCAGGAGCCTTA+AGG | + | tig0034145:1829-1848 | Msa1452760:CDS | 50.0% | |
| ATCAGGAGCCTTAAGGAGCA+AGG | + | tig0034145:1836-1855 | Msa1452760:CDS | 50.0% | |
| GTCTCTCAACCATTTCCCTC+CGG | - | tig0034145:2271-2290 | Msa1452760:intergenic | 50.0% | |
| AAAACTGCTACTGGAGCAGC+AGG | - | tig0034145:2329-2348 | Msa1452760:intergenic | 50.0% | |
| ACCACCAGGAAACCAAAGCA+AGG | + | tig0034145:2412-2431 | Msa1452760:CDS | 50.0% | |
| CCACCAGGAAACCAAAGCAA+GGG | + | tig0034145:2413-2432 | Msa1452760:CDS | 50.0% | |
| ATCCGGACTTACCCTTGCTT+TGG | - | tig0034145:2427-2446 | Msa1452760:intergenic | 50.0% | |
| ! | TAGGTCGAATTGGTGGGTGC+TGG | + | tig0034145:566-585 | Msa1452760:intron | 55.0% |
| ACTTGGGAGGTGAGATGAGG+AGG | + | tig0034145:598-617 | Msa1452760:CDS | 55.0% | |
| CTTGGGAGGTGAGATGAGGA+GGG | + | tig0034145:599-618 | Msa1452760:CDS | 55.0% | |
| TCCGCAAATGTTGAAGGGCC+TGG | - | tig0034145:773-792 | Msa1452760:intergenic | 55.0% | |
| AGGAGCCACACCTGACTGTT+GGG | + | tig0034145:1456-1475 | Msa1452760:CDS | 55.0% | |
| GCCGTGATCATCAGCATCAC+TGG | - | tig0034145:1800-1819 | Msa1452760:intergenic | 55.0% | |
| TTAAGGAGCAAGGCCGCCTT+GGG | + | tig0034145:1846-1865 | Msa1452760:CDS | 55.0% | |
| CGCCAAAAAATCGCCCAAGG+CGG | - | tig0034145:1862-1881 | Msa1452760:intergenic | 55.0% | |
| !!! | CGCCTTGGGCGATTTTTTGG+CGG | + | tig0034145:1860-1879 | Msa1452760:CDS | 55.0% |
| CTCCGCCAAAAAATCGCCCA+AGG | - | tig0034145:1865-1884 | Msa1452760:intergenic | 55.0% | |
| ! | CCCTTGCTTTGGTTTCCTGG+TGG | - | tig0034145:2416-2435 | Msa1452760:intergenic | 55.0% |
| GAGGAGCCACACCTGACTGT+TGG | + | tig0034145:1455-1474 | Msa1452760:CDS | 60.0% | |
| CAAGGCGGCCTTGCTCCTTA+AGG | - | tig0034145:1847-1866 | Msa1452760:intergenic | 60.0% | |
| CTTAAGGAGCAAGGCCGCCT+TGG | + | tig0034145:1845-1864 | Msa1452760:CDS | 60.0% | |
| !!! | GGCCGCCTTGGGCGATTTTT+TGG | + | tig0034145:1857-1876 | Msa1452760:CDS | 60.0% |
| TCACACGCGAGCTCGAGTTC+CGG | + | tig0034145:2249-2268 | Msa1452760:CDS | 60.0% | |
| GCTCGAGTTCCGGAGGGAAA+TGG | + | tig0034145:2259-2278 | Msa1452760:CDS | 60.0% | |
| ACGCGAGCTCGAGTTCCGGA+GGG | + | tig0034145:2253-2272 | Msa1452760:CDS | 65.0% | |
| CACGCGAGCTCGAGTTCCGG+AGG | + | tig0034145:2252-2271 | Msa1452760:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0034145 | gene | 180 | 2673 | 180 | ID=Msa1452760;Name=Msa1452760 |
| tig0034145 | mRNA | 180 | 2673 | 180 | ID=Msa1452760-mRNA-1;Parent=Msa1452760;Name=Msa1452760-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.75|0.6|1|1|1|5|225|490 |
| tig0034145 | exon | 180 | 316 | 180 | ID=Msa1452760-mRNA-1:exon:18795;Parent=Msa1452760-mRNA-1 |
| tig0034145 | exon | 569 | 1238 | 569 | ID=Msa1452760-mRNA-1:exon:18796;Parent=Msa1452760-mRNA-1 |
| tig0034145 | exon | 1398 | 1510 | 1398 | ID=Msa1452760-mRNA-1:exon:18797;Parent=Msa1452760-mRNA-1 |
| tig0034145 | exon | 1775 | 2030 | 1775 | ID=Msa1452760-mRNA-1:exon:18798;Parent=Msa1452760-mRNA-1 |
| tig0034145 | exon | 2152 | 2673 | 2152 | ID=Msa1452760-mRNA-1:exon:18799;Parent=Msa1452760-mRNA-1 |
| tig0034145 | CDS | 180 | 316 | 180 | ID=Msa1452760-mRNA-1:cds;Parent=Msa1452760-mRNA-1 |
| tig0034145 | CDS | 569 | 1238 | 569 | ID=Msa1452760-mRNA-1:cds;Parent=Msa1452760-mRNA-1 |
| tig0034145 | CDS | 1398 | 1510 | 1398 | ID=Msa1452760-mRNA-1:cds;Parent=Msa1452760-mRNA-1 |
| tig0034145 | CDS | 1775 | 2030 | 1775 | ID=Msa1452760-mRNA-1:cds;Parent=Msa1452760-mRNA-1 |
| tig0034145 | CDS | 2152 | 2448 | 2152 | ID=Msa1452760-mRNA-1:cds;Parent=Msa1452760-mRNA-1 |
| tig0034145 | three_prime_UTR | 2449 | 2673 | 2449 | ID=Msa1452760-mRNA-1:three_prime_utr;Parent=Msa1452760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
