Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189170 | AES63309.1 | 94.340 | 318 | 15 | 1 | 1 | 318 | 1 | 315 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189170 | sp|O22197|RHC1A_ARATH | 32.759 | 232 | 143 | 4 | 24 | 248 | 9 | 234 | 3.85e-32 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189170 | G7IJX1 | 94.340 | 318 | 15 | 1 | 1 | 318 | 1 | 315 | 0.0 | 587 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189170 | Msa0270750 | 0.863110 | 3.145173e-64 | -8.615850e-47 |
| Msa0189170 | Msa0309470 | 0.881101 | 3.173595e-70 | -8.615850e-47 |
| Msa0189170 | Msa1452770 | 0.983975 | 3.110269e-159 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189170 | MtrunA17_Chr2g0278071 | 93.968 | 315 | 16 | 1 | 1 | 315 | 58 | 369 | 0.0 | 579 |
| Msa0189170 | MtrunA17_Chr3g0114781 | 34.749 | 259 | 133 | 7 | 18 | 248 | 15 | 265 | 4.10e-41 | 145 |
| Msa0189170 | MtrunA17_Chr1g0171791 | 40.972 | 144 | 78 | 2 | 143 | 280 | 99 | 241 | 9.55e-33 | 122 |
| Msa0189170 | MtrunA17_Chr3g0093621 | 32.500 | 240 | 135 | 7 | 23 | 248 | 8 | 234 | 1.82e-31 | 119 |
| Msa0189170 | MtrunA17_Chr5g0441191 | 53.933 | 89 | 40 | 1 | 160 | 248 | 157 | 244 | 3.50e-29 | 114 |
| Msa0189170 | MtrunA17_Chr4g0031931 | 54.545 | 88 | 40 | 0 | 161 | 248 | 138 | 225 | 1.76e-28 | 112 |
| Msa0189170 | MtrunA17_Chr2g0328531 | 30.435 | 230 | 146 | 5 | 23 | 248 | 14 | 233 | 2.25e-27 | 109 |
| Msa0189170 | MtrunA17_Chr1g0211891 | 57.895 | 76 | 31 | 1 | 174 | 248 | 163 | 238 | 2.20e-25 | 103 |
| Msa0189170 | MtrunA17_Chr6g0481701 | 50.000 | 92 | 44 | 2 | 159 | 248 | 188 | 279 | 6.14e-25 | 103 |
| Msa0189170 | MtrunA17_Chr3g0112071 | 53.521 | 71 | 33 | 0 | 178 | 248 | 170 | 240 | 4.79e-24 | 101 |
| Msa0189170 | MtrunA17_Chr5g0435561 | 52.857 | 70 | 33 | 0 | 179 | 248 | 168 | 237 | 2.58e-23 | 99.0 |
| Msa0189170 | MtrunA17_Chr3g0121201 | 46.739 | 92 | 43 | 2 | 159 | 249 | 196 | 282 | 4.14e-21 | 92.4 |
| Msa0189170 | MtrunA17_Chr7g0245341 | 43.158 | 95 | 52 | 2 | 156 | 248 | 295 | 389 | 2.28e-19 | 88.6 |
| Msa0189170 | MtrunA17_Chr1g0212081 | 50.000 | 78 | 37 | 1 | 171 | 248 | 233 | 308 | 2.46e-18 | 84.3 |
| Msa0189170 | MtrunA17_Chr4g0061811 | 54.167 | 72 | 32 | 1 | 178 | 248 | 333 | 404 | 6.79e-18 | 83.6 |
| Msa0189170 | MtrunA17_Chr5g0417501 | 37.363 | 91 | 53 | 2 | 158 | 248 | 73 | 159 | 8.83e-18 | 80.9 |
| Msa0189170 | MtrunA17_Chr1g0150571 | 42.169 | 83 | 44 | 2 | 175 | 254 | 201 | 282 | 1.77e-17 | 81.6 |
| Msa0189170 | MtrunA17_Chr6g0456041 | 49.333 | 75 | 37 | 1 | 175 | 248 | 244 | 318 | 1.45e-16 | 79.3 |
| Msa0189170 | MtrunA17_Chr6g0461611 | 34.862 | 109 | 52 | 4 | 154 | 248 | 177 | 280 | 2.05e-13 | 69.7 |
| Msa0189170 | MtrunA17_Chr3g0124731 | 44.286 | 70 | 37 | 1 | 179 | 248 | 166 | 233 | 3.74e-13 | 68.2 |
| Msa0189170 | MtrunA17_Chr1g0181921 | 46.377 | 69 | 33 | 1 | 180 | 248 | 189 | 253 | 6.83e-13 | 67.8 |
| Msa0189170 | MtrunA17_Chr4g0027761 | 38.710 | 93 | 47 | 4 | 183 | 268 | 104 | 193 | 9.44e-13 | 66.2 |
| Msa0189170 | MtrunA17_Chr5g0424081 | 48.333 | 60 | 30 | 1 | 190 | 248 | 209 | 268 | 4.67e-12 | 65.9 |
| Msa0189170 | MtrunA17_Chr2g0308971 | 52.381 | 42 | 20 | 0 | 204 | 245 | 109 | 150 | 6.70e-12 | 64.3 |
| Msa0189170 | MtrunA17_Chr6g0486651 | 31.538 | 130 | 66 | 6 | 122 | 248 | 55 | 164 | 1.58e-11 | 64.7 |
| Msa0189170 | MtrunA17_Chr3g0089261 | 42.857 | 70 | 32 | 2 | 179 | 248 | 279 | 340 | 7.38e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189170 | AT1G68180.1 | 32.362 | 309 | 127 | 10 | 1 | 306 | 1 | 230 | 1.31e-41 | 144 |
| Msa0189170 | AT1G60360.1 | 33.977 | 259 | 144 | 8 | 17 | 252 | 18 | 272 | 4.38e-34 | 127 |
| Msa0189170 | AT2G40830.1 | 32.759 | 232 | 143 | 4 | 24 | 248 | 9 | 234 | 3.92e-33 | 125 |
| Msa0189170 | AT2G40830.3 | 32.759 | 232 | 143 | 4 | 24 | 248 | 9 | 234 | 3.92e-33 | 125 |
| Msa0189170 | AT2G40830.4 | 32.759 | 232 | 143 | 4 | 24 | 248 | 9 | 234 | 3.92e-33 | 125 |
| Msa0189170 | AT2G40830.2 | 32.759 | 232 | 143 | 4 | 24 | 248 | 9 | 234 | 3.92e-33 | 125 |
| Msa0189170 | AT3G56580.3 | 32.051 | 234 | 138 | 6 | 24 | 248 | 9 | 230 | 5.01e-33 | 124 |
| Msa0189170 | AT3G56580.1 | 32.051 | 234 | 138 | 6 | 24 | 248 | 9 | 230 | 5.01e-33 | 124 |
| Msa0189170 | AT3G56580.2 | 32.051 | 234 | 138 | 6 | 24 | 248 | 9 | 230 | 5.01e-33 | 124 |
| Msa0189170 | AT3G10815.1 | 52.174 | 92 | 44 | 0 | 157 | 248 | 74 | 165 | 7.22e-29 | 110 |
| Msa0189170 | AT3G19950.2 | 32.922 | 243 | 143 | 7 | 23 | 248 | 79 | 318 | 1.28e-27 | 111 |
| Msa0189170 | AT3G19950.3 | 32.922 | 243 | 143 | 7 | 23 | 248 | 79 | 318 | 1.28e-27 | 111 |
| Msa0189170 | AT3G19950.1 | 32.922 | 243 | 143 | 7 | 23 | 248 | 21 | 260 | 2.09e-27 | 109 |
| Msa0189170 | AT5G59550.1 | 50.538 | 93 | 42 | 1 | 174 | 266 | 169 | 257 | 9.16e-27 | 109 |
| Msa0189170 | AT5G59550.2 | 50.538 | 93 | 42 | 1 | 174 | 266 | 274 | 362 | 1.44e-26 | 109 |
| Msa0189170 | AT3G46620.1 | 29.218 | 243 | 141 | 7 | 23 | 248 | 31 | 259 | 5.58e-26 | 107 |
| Msa0189170 | AT3G13430.4 | 51.948 | 77 | 33 | 1 | 172 | 248 | 197 | 269 | 2.78e-23 | 98.2 |
| Msa0189170 | AT3G13430.3 | 51.948 | 77 | 33 | 1 | 172 | 248 | 197 | 269 | 2.78e-23 | 98.2 |
| Msa0189170 | AT3G13430.1 | 51.948 | 77 | 33 | 1 | 172 | 248 | 197 | 269 | 2.78e-23 | 98.2 |
| Msa0189170 | AT3G13430.2 | 51.948 | 77 | 33 | 1 | 172 | 248 | 197 | 269 | 2.78e-23 | 98.2 |
| Msa0189170 | AT2G39720.1 | 55.844 | 77 | 32 | 1 | 178 | 252 | 173 | 249 | 1.55e-22 | 97.4 |
| Msa0189170 | AT2G39720.2 | 55.844 | 77 | 32 | 1 | 178 | 252 | 173 | 249 | 1.55e-22 | 97.4 |
| Msa0189170 | AT5G15820.1 | 55.405 | 74 | 32 | 1 | 176 | 248 | 262 | 335 | 2.31e-21 | 93.2 |
| Msa0189170 | AT1G55530.3 | 26.860 | 242 | 145 | 7 | 23 | 248 | 9 | 234 | 3.75e-21 | 92.4 |
| Msa0189170 | AT3G02340.1 | 50.562 | 89 | 40 | 3 | 161 | 248 | 294 | 379 | 1.66e-20 | 91.7 |
| Msa0189170 | AT3G02340.2 | 50.562 | 89 | 40 | 3 | 161 | 248 | 294 | 379 | 1.66e-20 | 91.7 |
| Msa0189170 | AT5G56340.1 | 46.154 | 91 | 43 | 2 | 159 | 248 | 218 | 303 | 5.76e-20 | 90.1 |
| Msa0189170 | AT1G55530.1 | 48.000 | 75 | 34 | 1 | 174 | 248 | 198 | 267 | 5.87e-20 | 89.4 |
| Msa0189170 | AT1G55530.2 | 48.000 | 75 | 34 | 1 | 174 | 248 | 198 | 267 | 5.87e-20 | 89.4 |
| Msa0189170 | AT5G01980.1 | 39.623 | 106 | 60 | 2 | 144 | 248 | 292 | 394 | 6.05e-19 | 87.4 |
| Msa0189170 | AT4G26400.2 | 43.333 | 90 | 45 | 2 | 160 | 248 | 201 | 285 | 8.29e-19 | 86.3 |
| Msa0189170 | AT4G26400.1 | 43.333 | 90 | 45 | 2 | 160 | 248 | 201 | 285 | 8.29e-19 | 86.3 |
| Msa0189170 | AT5G20910.1 | 40.217 | 92 | 52 | 1 | 160 | 248 | 183 | 274 | 2.01e-17 | 81.6 |
| Msa0189170 | AT5G60820.1 | 42.268 | 97 | 50 | 2 | 156 | 248 | 322 | 416 | 7.19e-17 | 81.3 |
| Msa0189170 | AT1G26800.1 | 42.466 | 73 | 38 | 1 | 176 | 248 | 89 | 157 | 9.30e-17 | 77.8 |
| Msa0189170 | AT1G14200.1 | 37.624 | 101 | 58 | 2 | 149 | 248 | 57 | 153 | 5.09e-16 | 75.1 |
| Msa0189170 | AT5G08139.1 | 48.000 | 75 | 36 | 2 | 176 | 248 | 280 | 353 | 5.88e-16 | 78.2 |
| Msa0189170 | AT5G64920.1 | 45.333 | 75 | 41 | 0 | 178 | 252 | 231 | 305 | 1.83e-15 | 76.3 |
| Msa0189170 | AT3G60080.1 | 44.444 | 72 | 32 | 2 | 185 | 248 | 142 | 213 | 7.62e-15 | 74.3 |
| Msa0189170 | AT2G44330.1 | 45.714 | 70 | 32 | 1 | 185 | 248 | 71 | 140 | 1.65e-13 | 68.2 |
| Msa0189170 | AT3G30460.1 | 36.957 | 92 | 53 | 2 | 160 | 249 | 54 | 142 | 5.94e-13 | 65.9 |
| Msa0189170 | AT3G30460.2 | 36.957 | 92 | 53 | 2 | 160 | 249 | 90 | 178 | 8.84e-13 | 66.2 |
| Msa0189170 | AT5G02750.1 | 52.000 | 50 | 24 | 0 | 199 | 248 | 209 | 258 | 2.24e-11 | 63.9 |
| Msa0189170 | AT2G03000.1 | 41.892 | 74 | 36 | 3 | 179 | 251 | 461 | 528 | 4.60e-11 | 63.9 |
| Msa0189170 | AT2G01735.1 | 37.037 | 81 | 49 | 2 | 176 | 255 | 280 | 359 | 7.70e-11 | 62.8 |
Find 90 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGCTGATCATTCTCATTT+TGG | 0.076885 | 2_1:-4482524 | None:intergenic |
| TGAGAACCTTCCACTATTTC+TGG | 0.165081 | 2_1:+4481791 | Msa0189170:CDS |
| TCTTTGCATATAGGACAATT+TGG | 0.213259 | 2_1:-4482345 | None:intergenic |
| AATTTACAAGCAGCATTAAT+TGG | 0.221425 | 2_1:+4482565 | Msa0189170:CDS |
| GGGTCCATGTTTCTGTTGTT+AGG | 0.244692 | 2_1:-4481949 | None:intergenic |
| CAAGCAGCATTAATTGGATT+TGG | 0.248709 | 2_1:+4482571 | Msa0189170:CDS |
| AAACAACACAACACCACAAT+GGG | 0.266552 | 2_1:+4482044 | Msa0189170:CDS |
| TCCTTCTACTAACCAGTTAA+TGG | 0.270630 | 2_1:+4481975 | Msa0189170:CDS |
| ACAAATACCATTCAAAATTA+TGG | 0.274205 | 2_1:+4481850 | Msa0189170:CDS |
| GAATGATCAGCAGGGTTTCT+TGG | 0.309653 | 2_1:+4482533 | Msa0189170:CDS |
| AATGATCAGCAGGGTTTCTT+GGG | 0.310221 | 2_1:+4482534 | Msa0189170:CDS |
| CGCAGTTGATGGAAGCAATA+TGG | 0.332701 | 2_1:-4481883 | None:intergenic |
| TGAAGCCTTGCCAATGGTTA+AGG | 0.364501 | 2_1:+4482296 | Msa0189170:CDS |
| ACGAGCGTGGAGCTCAAAAT+AGG | 0.367783 | 2_1:-4482646 | None:intergenic |
| TCATTAGATGAGTTCTTTGA+TGG | 0.373604 | 2_1:+4482219 | Msa0189170:CDS |
| CAAGTTCATAACGCAGTTGA+TGG | 0.375121 | 2_1:-4481894 | None:intergenic |
| CTGTAGCTCGTGACGGCATA+CGG | 0.378221 | 2_1:-4482466 | None:intergenic |
| ATTGTGGTGTTGTGTTGTTT+TGG | 0.388494 | 2_1:-4482041 | None:intergenic |
| AGAAGTAAGATCAAACTCTA+AGG | 0.394477 | 2_1:+4482678 | Msa0189170:CDS |
| GGTCCATGTTTCTGTTGTTA+GGG | 0.400373 | 2_1:-4481948 | None:intergenic |
| AATAGGACCGCGTCCAATCT+AGG | 0.407821 | 2_1:-4482629 | None:intergenic |
| CGTATGCCGTCACGAGCTAC+AGG | 0.415344 | 2_1:+4482467 | Msa0189170:CDS |
| CCAAAATGAGAATGATCAGC+AGG | 0.417579 | 2_1:+4482524 | Msa0189170:CDS |
| AAGCTAAGCTACCCATTAAC+TGG | 0.418537 | 2_1:-4481987 | None:intergenic |
| GCAGGGTTTCTTGGGGTTTG+AGG | 0.423615 | 2_1:+4482542 | Msa0189170:CDS |
| CCCATTAACTGGTTAGTAGA+AGG | 0.433887 | 2_1:-4481976 | None:intergenic |
| TGGTCTTGTCTTCTAAGAGA+TGG | 0.437407 | 2_1:-4482021 | None:intergenic |
| CAATCTAGGACTGCTCGAAT+AGG | 0.437852 | 2_1:-4482615 | None:intergenic |
| GGTGGTGGTGCAATAGGCCT+TGG | 0.439267 | 2_1:-4482144 | None:intergenic |
| ATTCTGACTGCATTCTCCCT+TGG | 0.441720 | 2_1:+4482421 | Msa0189170:CDS |
| TCAAACTCATCTTTGCATAT+AGG | 0.442911 | 2_1:-4482354 | None:intergenic |
| AACCATTGGCAAGGCTTCAA+TGG | 0.443378 | 2_1:-4482292 | None:intergenic |
| CCTTCTACTAACCAGTTAAT+GGG | 0.452199 | 2_1:+4481976 | Msa0189170:CDS |
| GGAGATGCTGGAGGTGGCCC+AGG | 0.457199 | 2_1:-4482264 | None:intergenic |
| GGAGCCAACTTGCTTCGATT+AGG | 0.457339 | 2_1:+4482592 | Msa0189170:CDS |
| TCAAAGAACTCATCTAATGA+AGG | 0.479520 | 2_1:-4482216 | None:intergenic |
| CATTAGATGAGTTCTTTGAT+GGG | 0.483678 | 2_1:+4482220 | Msa0189170:CDS |
| TATATGCAAAGATGAGTTTG+AGG | 0.486390 | 2_1:+4482356 | Msa0189170:CDS |
| ACCACCACCATCACAAAACT+TGG | 0.486668 | 2_1:+4482167 | Msa0189170:CDS |
| GGTGGTGCAATAGGCCTTGG+TGG | 0.488698 | 2_1:-4482141 | None:intergenic |
| CTATTCGAGCAGTCCTAGAT+TGG | 0.488931 | 2_1:+4482616 | Msa0189170:CDS |
| GCCACCTCCAGCATCTCCTT+CGG | 0.489432 | 2_1:+4482269 | Msa0189170:CDS |
| AAAACAACACAACACCACAA+TGG | 0.496778 | 2_1:+4482043 | Msa0189170:CDS |
| TCAATGGCCGAAGGAGATGC+TGG | 0.500012 | 2_1:-4482276 | None:intergenic |
| TGTAGCTCGTGACGGCATAC+GGG | 0.506136 | 2_1:-4482465 | None:intergenic |
| AATTGAGACACCAGAAATAG+TGG | 0.510710 | 2_1:-4481801 | None:intergenic |
| GCCGAAGGAGATGCTGGAGG+TGG | 0.514613 | 2_1:-4482270 | None:intergenic |
| GGGTCATTCATAAGAAGTCT+TGG | 0.524227 | 2_1:-4481928 | None:intergenic |
| TCCAATAATATGTCTCTGAC+AGG | 0.524599 | 2_1:+4481733 | None:intergenic |
| GCTTCTGTTACCTTAACCAT+TGG | 0.525756 | 2_1:-4482306 | None:intergenic |
| CAAAGAACTCATCTAATGAA+GGG | 0.526024 | 2_1:-4482215 | None:intergenic |
| GTTATGAACTTGATATATCA+AGG | 0.531624 | 2_1:+4481905 | Msa0189170:CDS |
| GTCTTCTAAGAGATGGATCA+AGG | 0.535188 | 2_1:-4482014 | None:intergenic |
| AAGGGAGAATGCAGTCAGAA+TGG | 0.535813 | 2_1:-4482419 | None:intergenic |
| TCATGTTCTGTTCCCCATTG+TGG | 0.540794 | 2_1:-4482057 | None:intergenic |
| AACTGGTTAGTAGAAGGAGG+AGG | 0.540994 | 2_1:-4481970 | None:intergenic |
| GTGTTATGCATTTGAAGCCA+AGG | 0.541607 | 2_1:-4482438 | None:intergenic |
| TTCTACTACGAGCACGAGCG+TGG | 0.546469 | 2_1:-4482659 | None:intergenic |
| AAAATCAAAATCCACAAGCA+TGG | 0.547418 | 2_1:+4482088 | Msa0189170:CDS |
| ATAGGCCTTGGTGGATGAGT+TGG | 0.551028 | 2_1:-4482132 | None:intergenic |
| GGCCATTGAAGCCTTGCCAA+TGG | 0.553512 | 2_1:+4482290 | Msa0189170:CDS |
| CGTCCTCGTGTCATTGTCGA+CGG | 0.567011 | 2_1:+4481757 | Msa0189170:CDS |
| CTTAGTGTAATCCATGCTTG+TGG | 0.570113 | 2_1:-4482099 | None:intergenic |
| CAAAATGAGAATGATCAGCA+GGG | 0.573456 | 2_1:+4482525 | Msa0189170:CDS |
| AGATGAGTTTGAGGTTGATG+TGG | 0.576181 | 2_1:+4482365 | Msa0189170:CDS |
| TGTTACCTTAACCATTGGCA+AGG | 0.594184 | 2_1:-4482301 | None:intergenic |
| TGTTATGCATTTGAAGCCAA+GGG | 0.598250 | 2_1:-4482437 | None:intergenic |
| ATTAGATGAGTTCTTTGATG+GGG | 0.601899 | 2_1:+4482221 | Msa0189170:CDS |
| TAGGCCTAATCGAAGCAAGT+TGG | 0.610681 | 2_1:-4482596 | None:intergenic |
| GAATGGTAGAAATGTTTGCA+TGG | 0.616001 | 2_1:-4482402 | None:intergenic |
| ATGATCAGCAGGGTTTCTTG+GGG | 0.617582 | 2_1:+4482535 | Msa0189170:CDS |
| ATGGTATTCTGACAGTACGT+TGG | 0.622474 | 2_1:-4481825 | None:intergenic |
| AAAGAACTCATCTAATGAAG+GGG | 0.623408 | 2_1:-4482214 | None:intergenic |
| AACAACACAACACCACAATG+GGG | 0.628137 | 2_1:+4482045 | Msa0189170:CDS |
| ATTCACAACAATATTAGACC+TGG | 0.629704 | 2_1:+4482246 | Msa0189170:CDS |
| GGCAAGGCTTCAATGGCCGA+AGG | 0.631031 | 2_1:-4482285 | None:intergenic |
| CAACGCCCTGTAGCTCGTGA+CGG | 0.639056 | 2_1:-4482473 | None:intergenic |
| TGACCCTAACAACAGAAACA+TGG | 0.639124 | 2_1:+4481945 | Msa0189170:CDS |
| ACTGGTTAGTAGAAGGAGGA+GGG | 0.643379 | 2_1:-4481969 | None:intergenic |
| GTTTCAATGTCATTGAGCTG+AGG | 0.643651 | 2_1:-4482192 | None:intergenic |
| GTAGCTCGTGACGGCATACG+GGG | 0.647054 | 2_1:-4482464 | None:intergenic |
| GAGACACCAGAAATAGTGGA+AGG | 0.648767 | 2_1:-4481797 | None:intergenic |
| GTATGCCGTCACGAGCTACA+GGG | 0.649158 | 2_1:+4482468 | Msa0189170:CDS |
| ATTAACTGGTTAGTAGAAGG+AGG | 0.655639 | 2_1:-4481973 | None:intergenic |
| CGTCGACAATGACACGAGGA+CGG | 0.658835 | 2_1:-4481756 | None:intergenic |
| TTCACAACAATATTAGACCT+GGG | 0.671187 | 2_1:+4482247 | Msa0189170:CDS |
| GAGCAGTCCTAGATTGGACG+CGG | 0.690002 | 2_1:+4482622 | Msa0189170:CDS |
| ATGGCCGAAGGAGATGCTGG+AGG | 0.719854 | 2_1:-4482273 | None:intergenic |
| TAAGACCAACTCATCCACCA+AGG | 0.753067 | 2_1:+4482127 | Msa0189170:CDS |
| ACACCGTCGACAATGACACG+AGG | 0.757808 | 2_1:-4481760 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATACCATTCAAAATTA+TGG | + | chr2_1:4481850-4481869 | Msa0189170:CDS | 20.0% |
| !! | ACAAATACCATTCAAAATTA+TGG | + | chr2_1:4481850-4481869 | Msa0189170:CDS | 20.0% |
| !!! | TTTTGAATGGTATTTGTTGA+TGG | - | chr2_1:4481847-4481866 | None:intergenic | 25.0% |
| ! | GTTATGAACTTGATATATCA+AGG | + | chr2_1:4481905-4481924 | Msa0189170:CDS | 25.0% |
| ! | AATTTACAAGCAGCATTAAT+TGG | + | chr2_1:4482565-4482584 | Msa0189170:CDS | 25.0% |
| !!! | TTTTGAATGGTATTTGTTGA+TGG | - | chr2_1:4481847-4481866 | None:intergenic | 25.0% |
| ! | GTTATGAACTTGATATATCA+AGG | + | chr2_1:4481905-4481924 | Msa0189170:CDS | 25.0% |
| ! | AATTTACAAGCAGCATTAAT+TGG | + | chr2_1:4482565-4482584 | Msa0189170:CDS | 25.0% |
| ! | GAAAGAGCCATAATTTTGAA+TGG | - | chr2_1:4481860-4481879 | None:intergenic | 30.0% |
| AAAATCAAAATCCACAAGCA+TGG | + | chr2_1:4482088-4482107 | Msa0189170:CDS | 30.0% | |
| AAAGAACTCATCTAATGAAG+GGG | - | chr2_1:4482217-4482236 | None:intergenic | 30.0% | |
| CAAAGAACTCATCTAATGAA+GGG | - | chr2_1:4482218-4482237 | None:intergenic | 30.0% | |
| TCAAAGAACTCATCTAATGA+AGG | - | chr2_1:4482219-4482238 | None:intergenic | 30.0% | |
| TCATTAGATGAGTTCTTTGA+TGG | + | chr2_1:4482219-4482238 | Msa0189170:CDS | 30.0% | |
| CATTAGATGAGTTCTTTGAT+GGG | + | chr2_1:4482220-4482239 | Msa0189170:CDS | 30.0% | |
| ATTAGATGAGTTCTTTGATG+GGG | + | chr2_1:4482221-4482240 | Msa0189170:CDS | 30.0% | |
| ATTCACAACAATATTAGACC+TGG | + | chr2_1:4482246-4482265 | Msa0189170:CDS | 30.0% | |
| TTCACAACAATATTAGACCT+GGG | + | chr2_1:4482247-4482266 | Msa0189170:CDS | 30.0% | |
| TCTTTGCATATAGGACAATT+TGG | - | chr2_1:4482348-4482367 | None:intergenic | 30.0% | |
| TCAAACTCATCTTTGCATAT+AGG | - | chr2_1:4482357-4482376 | None:intergenic | 30.0% | |
| TATATGCAAAGATGAGTTTG+AGG | + | chr2_1:4482356-4482375 | Msa0189170:CDS | 30.0% | |
| !! | TCTCATTTTGGAAAAAGTAG+TGG | - | chr2_1:4482515-4482534 | None:intergenic | 30.0% |
| ! | GAAAGAGCCATAATTTTGAA+TGG | - | chr2_1:4481860-4481879 | None:intergenic | 30.0% |
| AAAATCAAAATCCACAAGCA+TGG | + | chr2_1:4482088-4482107 | Msa0189170:CDS | 30.0% | |
| AAAGAACTCATCTAATGAAG+GGG | - | chr2_1:4482217-4482236 | None:intergenic | 30.0% | |
| CAAAGAACTCATCTAATGAA+GGG | - | chr2_1:4482218-4482237 | None:intergenic | 30.0% | |
| TCAAAGAACTCATCTAATGA+AGG | - | chr2_1:4482219-4482238 | None:intergenic | 30.0% | |
| TCATTAGATGAGTTCTTTGA+TGG | + | chr2_1:4482219-4482238 | Msa0189170:CDS | 30.0% | |
| CATTAGATGAGTTCTTTGAT+GGG | + | chr2_1:4482220-4482239 | Msa0189170:CDS | 30.0% | |
| ATTAGATGAGTTCTTTGATG+GGG | + | chr2_1:4482221-4482240 | Msa0189170:CDS | 30.0% | |
| ATTCACAACAATATTAGACC+TGG | + | chr2_1:4482246-4482265 | Msa0189170:CDS | 30.0% | |
| TTCACAACAATATTAGACCT+GGG | + | chr2_1:4482247-4482266 | Msa0189170:CDS | 30.0% | |
| TCTTTGCATATAGGACAATT+TGG | - | chr2_1:4482348-4482367 | None:intergenic | 30.0% | |
| TCAAACTCATCTTTGCATAT+AGG | - | chr2_1:4482357-4482376 | None:intergenic | 30.0% | |
| TATATGCAAAGATGAGTTTG+AGG | + | chr2_1:4482356-4482375 | Msa0189170:CDS | 30.0% | |
| !! | TCTCATTTTGGAAAAAGTAG+TGG | - | chr2_1:4482515-4482534 | None:intergenic | 30.0% |
| AATTGAGACACCAGAAATAG+TGG | - | chr2_1:4481804-4481823 | None:intergenic | 35.0% | |
| ATTAACTGGTTAGTAGAAGG+AGG | - | chr2_1:4481976-4481995 | None:intergenic | 35.0% | |
| TCCTTCTACTAACCAGTTAA+TGG | + | chr2_1:4481975-4481994 | Msa0189170:CDS | 35.0% | |
| CCTTCTACTAACCAGTTAAT+GGG | + | chr2_1:4481976-4481995 | Msa0189170:CDS | 35.0% | |
| !!! | ATTGTGGTGTTGTGTTGTTT+TGG | - | chr2_1:4482044-4482063 | None:intergenic | 35.0% |
| AAAACAACACAACACCACAA+TGG | + | chr2_1:4482043-4482062 | Msa0189170:CDS | 35.0% | |
| AAACAACACAACACCACAAT+GGG | + | chr2_1:4482044-4482063 | Msa0189170:CDS | 35.0% | |
| GAATGGTAGAAATGTTTGCA+TGG | - | chr2_1:4482405-4482424 | None:intergenic | 35.0% | |
| ! | TGTTATGCATTTGAAGCCAA+GGG | - | chr2_1:4482440-4482459 | None:intergenic | 35.0% |
| CAAAATGAGAATGATCAGCA+GGG | + | chr2_1:4482525-4482544 | Msa0189170:CDS | 35.0% | |
| CAAGCAGCATTAATTGGATT+TGG | + | chr2_1:4482571-4482590 | Msa0189170:CDS | 35.0% | |
| AATTGAGACACCAGAAATAG+TGG | - | chr2_1:4481804-4481823 | None:intergenic | 35.0% | |
| ATTAACTGGTTAGTAGAAGG+AGG | - | chr2_1:4481976-4481995 | None:intergenic | 35.0% | |
| TCCTTCTACTAACCAGTTAA+TGG | + | chr2_1:4481975-4481994 | Msa0189170:CDS | 35.0% | |
| CCTTCTACTAACCAGTTAAT+GGG | + | chr2_1:4481976-4481995 | Msa0189170:CDS | 35.0% | |
| !!! | ATTGTGGTGTTGTGTTGTTT+TGG | - | chr2_1:4482044-4482063 | None:intergenic | 35.0% |
| AAAACAACACAACACCACAA+TGG | + | chr2_1:4482043-4482062 | Msa0189170:CDS | 35.0% | |
| AAACAACACAACACCACAAT+GGG | + | chr2_1:4482044-4482063 | Msa0189170:CDS | 35.0% | |
| GAATGGTAGAAATGTTTGCA+TGG | - | chr2_1:4482405-4482424 | None:intergenic | 35.0% | |
| ! | TGTTATGCATTTGAAGCCAA+GGG | - | chr2_1:4482440-4482459 | None:intergenic | 35.0% |
| CAAAATGAGAATGATCAGCA+GGG | + | chr2_1:4482525-4482544 | Msa0189170:CDS | 35.0% | |
| CAAGCAGCATTAATTGGATT+TGG | + | chr2_1:4482571-4482590 | Msa0189170:CDS | 35.0% | |
| TGAGAACCTTCCACTATTTC+TGG | + | chr2_1:4481791-4481810 | Msa0189170:CDS | 40.0% | |
| ATGGTATTCTGACAGTACGT+TGG | - | chr2_1:4481828-4481847 | None:intergenic | 40.0% | |
| CAAGTTCATAACGCAGTTGA+TGG | - | chr2_1:4481897-4481916 | None:intergenic | 40.0% | |
| GGGTCATTCATAAGAAGTCT+TGG | - | chr2_1:4481931-4481950 | None:intergenic | 40.0% | |
| TGACCCTAACAACAGAAACA+TGG | + | chr2_1:4481945-4481964 | Msa0189170:CDS | 40.0% | |
| ! | GGTCCATGTTTCTGTTGTTA+GGG | - | chr2_1:4481951-4481970 | None:intergenic | 40.0% |
| CCCATTAACTGGTTAGTAGA+AGG | - | chr2_1:4481979-4481998 | None:intergenic | 40.0% | |
| AAGCTAAGCTACCCATTAAC+TGG | - | chr2_1:4481990-4482009 | None:intergenic | 40.0% | |
| ! | GTCTTCTAAGAGATGGATCA+AGG | - | chr2_1:4482017-4482036 | None:intergenic | 40.0% |
| !! | TGGTCTTGTCTTCTAAGAGA+TGG | - | chr2_1:4482024-4482043 | None:intergenic | 40.0% |
| AACAACACAACACCACAATG+GGG | + | chr2_1:4482045-4482064 | Msa0189170:CDS | 40.0% | |
| CTTAGTGTAATCCATGCTTG+TGG | - | chr2_1:4482102-4482121 | None:intergenic | 40.0% | |
| GTTTCAATGTCATTGAGCTG+AGG | - | chr2_1:4482195-4482214 | None:intergenic | 40.0% | |
| TGTTACCTTAACCATTGGCA+AGG | - | chr2_1:4482304-4482323 | None:intergenic | 40.0% | |
| GCTTCTGTTACCTTAACCAT+TGG | - | chr2_1:4482309-4482328 | None:intergenic | 40.0% | |
| !! | AGATGAGTTTGAGGTTGATG+TGG | + | chr2_1:4482365-4482384 | Msa0189170:CDS | 40.0% |
| ! | GTGTTATGCATTTGAAGCCA+AGG | - | chr2_1:4482441-4482460 | None:intergenic | 40.0% |
| ! | CCTGCTGATCATTCTCATTT+TGG | - | chr2_1:4482527-4482546 | None:intergenic | 40.0% |
| CCAAAATGAGAATGATCAGC+AGG | + | chr2_1:4482524-4482543 | Msa0189170:CDS | 40.0% | |
| AATGATCAGCAGGGTTTCTT+GGG | + | chr2_1:4482534-4482553 | Msa0189170:CDS | 40.0% | |
| TGAGAACCTTCCACTATTTC+TGG | + | chr2_1:4481791-4481810 | Msa0189170:CDS | 40.0% | |
| ATGGTATTCTGACAGTACGT+TGG | - | chr2_1:4481828-4481847 | None:intergenic | 40.0% | |
| CAAGTTCATAACGCAGTTGA+TGG | - | chr2_1:4481897-4481916 | None:intergenic | 40.0% | |
| GGGTCATTCATAAGAAGTCT+TGG | - | chr2_1:4481931-4481950 | None:intergenic | 40.0% | |
| TGACCCTAACAACAGAAACA+TGG | + | chr2_1:4481945-4481964 | Msa0189170:CDS | 40.0% | |
| ! | GGTCCATGTTTCTGTTGTTA+GGG | - | chr2_1:4481951-4481970 | None:intergenic | 40.0% |
| CCCATTAACTGGTTAGTAGA+AGG | - | chr2_1:4481979-4481998 | None:intergenic | 40.0% | |
| AAGCTAAGCTACCCATTAAC+TGG | - | chr2_1:4481990-4482009 | None:intergenic | 40.0% | |
| ! | GTCTTCTAAGAGATGGATCA+AGG | - | chr2_1:4482017-4482036 | None:intergenic | 40.0% |
| !! | TGGTCTTGTCTTCTAAGAGA+TGG | - | chr2_1:4482024-4482043 | None:intergenic | 40.0% |
| AACAACACAACACCACAATG+GGG | + | chr2_1:4482045-4482064 | Msa0189170:CDS | 40.0% | |
| CTTAGTGTAATCCATGCTTG+TGG | - | chr2_1:4482102-4482121 | None:intergenic | 40.0% | |
| GTTTCAATGTCATTGAGCTG+AGG | - | chr2_1:4482195-4482214 | None:intergenic | 40.0% | |
| TGTTACCTTAACCATTGGCA+AGG | - | chr2_1:4482304-4482323 | None:intergenic | 40.0% | |
| GCTTCTGTTACCTTAACCAT+TGG | - | chr2_1:4482309-4482328 | None:intergenic | 40.0% | |
| !! | AGATGAGTTTGAGGTTGATG+TGG | + | chr2_1:4482365-4482384 | Msa0189170:CDS | 40.0% |
| ! | GTGTTATGCATTTGAAGCCA+AGG | - | chr2_1:4482441-4482460 | None:intergenic | 40.0% |
| ! | CCTGCTGATCATTCTCATTT+TGG | - | chr2_1:4482527-4482546 | None:intergenic | 40.0% |
| CCAAAATGAGAATGATCAGC+AGG | + | chr2_1:4482524-4482543 | Msa0189170:CDS | 40.0% | |
| AATGATCAGCAGGGTTTCTT+GGG | + | chr2_1:4482534-4482553 | Msa0189170:CDS | 40.0% | |
| ! | GAGACACCAGAAATAGTGGA+AGG | - | chr2_1:4481800-4481819 | None:intergenic | 45.0% |
| !! | CGCAGTTGATGGAAGCAATA+TGG | - | chr2_1:4481886-4481905 | None:intergenic | 45.0% |
| ! | GGGTCCATGTTTCTGTTGTT+AGG | - | chr2_1:4481952-4481971 | None:intergenic | 45.0% |
| ACTGGTTAGTAGAAGGAGGA+GGG | - | chr2_1:4481972-4481991 | None:intergenic | 45.0% | |
| AACTGGTTAGTAGAAGGAGG+AGG | - | chr2_1:4481973-4481992 | None:intergenic | 45.0% | |
| TCATGTTCTGTTCCCCATTG+TGG | - | chr2_1:4482060-4482079 | None:intergenic | 45.0% | |
| TAAGACCAACTCATCCACCA+AGG | + | chr2_1:4482127-4482146 | Msa0189170:CDS | 45.0% | |
| !!! | AAGTTTTGTGATGGTGGTGG+TGG | - | chr2_1:4482168-4482187 | None:intergenic | 45.0% |
| ACCACCACCATCACAAAACT+TGG | + | chr2_1:4482167-4482186 | Msa0189170:CDS | 45.0% | |
| !! | TGAGGAGCCAAGTTTTGTGA+TGG | - | chr2_1:4482177-4482196 | None:intergenic | 45.0% |
| AACCATTGGCAAGGCTTCAA+TGG | - | chr2_1:4482295-4482314 | None:intergenic | 45.0% | |
| TGAAGCCTTGCCAATGGTTA+AGG | + | chr2_1:4482296-4482315 | Msa0189170:CDS | 45.0% | |
| AAGGGAGAATGCAGTCAGAA+TGG | - | chr2_1:4482422-4482441 | None:intergenic | 45.0% | |
| ATTCTGACTGCATTCTCCCT+TGG | + | chr2_1:4482421-4482440 | Msa0189170:CDS | 45.0% | |
| GAATGATCAGCAGGGTTTCT+TGG | + | chr2_1:4482533-4482552 | Msa0189170:CDS | 45.0% | |
| ATGATCAGCAGGGTTTCTTG+GGG | + | chr2_1:4482535-4482554 | Msa0189170:CDS | 45.0% | |
| TAGGCCTAATCGAAGCAAGT+TGG | - | chr2_1:4482599-4482618 | None:intergenic | 45.0% | |
| ! | CAATCTAGGACTGCTCGAAT+AGG | - | chr2_1:4482618-4482637 | None:intergenic | 45.0% |
| CTATTCGAGCAGTCCTAGAT+TGG | + | chr2_1:4482616-4482635 | Msa0189170:CDS | 45.0% | |
| ! | GAGACACCAGAAATAGTGGA+AGG | - | chr2_1:4481800-4481819 | None:intergenic | 45.0% |
| !! | CGCAGTTGATGGAAGCAATA+TGG | - | chr2_1:4481886-4481905 | None:intergenic | 45.0% |
| ! | GGGTCCATGTTTCTGTTGTT+AGG | - | chr2_1:4481952-4481971 | None:intergenic | 45.0% |
| ACTGGTTAGTAGAAGGAGGA+GGG | - | chr2_1:4481972-4481991 | None:intergenic | 45.0% | |
| AACTGGTTAGTAGAAGGAGG+AGG | - | chr2_1:4481973-4481992 | None:intergenic | 45.0% | |
| TCATGTTCTGTTCCCCATTG+TGG | - | chr2_1:4482060-4482079 | None:intergenic | 45.0% | |
| TAAGACCAACTCATCCACCA+AGG | + | chr2_1:4482127-4482146 | Msa0189170:CDS | 45.0% | |
| !!! | AAGTTTTGTGATGGTGGTGG+TGG | - | chr2_1:4482168-4482187 | None:intergenic | 45.0% |
| ACCACCACCATCACAAAACT+TGG | + | chr2_1:4482167-4482186 | Msa0189170:CDS | 45.0% | |
| !! | TGAGGAGCCAAGTTTTGTGA+TGG | - | chr2_1:4482177-4482196 | None:intergenic | 45.0% |
| AACCATTGGCAAGGCTTCAA+TGG | - | chr2_1:4482295-4482314 | None:intergenic | 45.0% | |
| TGAAGCCTTGCCAATGGTTA+AGG | + | chr2_1:4482296-4482315 | Msa0189170:CDS | 45.0% | |
| AAGGGAGAATGCAGTCAGAA+TGG | - | chr2_1:4482422-4482441 | None:intergenic | 45.0% | |
| ATTCTGACTGCATTCTCCCT+TGG | + | chr2_1:4482421-4482440 | Msa0189170:CDS | 45.0% | |
| GAATGATCAGCAGGGTTTCT+TGG | + | chr2_1:4482533-4482552 | Msa0189170:CDS | 45.0% | |
| ATGATCAGCAGGGTTTCTTG+GGG | + | chr2_1:4482535-4482554 | Msa0189170:CDS | 45.0% | |
| TAGGCCTAATCGAAGCAAGT+TGG | - | chr2_1:4482599-4482618 | None:intergenic | 45.0% | |
| ! | CAATCTAGGACTGCTCGAAT+AGG | - | chr2_1:4482618-4482637 | None:intergenic | 45.0% |
| CTATTCGAGCAGTCCTAGAT+TGG | + | chr2_1:4482616-4482635 | Msa0189170:CDS | 45.0% | |
| ! | ATAGGCCTTGGTGGATGAGT+TGG | - | chr2_1:4482135-4482154 | None:intergenic | 50.0% |
| !!! | TTTTGTGATGGTGGTGGTGG+TGG | - | chr2_1:4482165-4482184 | None:intergenic | 50.0% |
| !!! | GCCAAGTTTTGTGATGGTGG+TGG | - | chr2_1:4482171-4482190 | None:intergenic | 50.0% |
| !! | GGAGCCAAGTTTTGTGATGG+TGG | - | chr2_1:4482174-4482193 | None:intergenic | 50.0% |
| ! | GGAGCCAACTTGCTTCGATT+AGG | + | chr2_1:4482592-4482611 | Msa0189170:CDS | 50.0% |
| AATAGGACCGCGTCCAATCT+AGG | - | chr2_1:4482632-4482651 | None:intergenic | 50.0% | |
| ACGAGCGTGGAGCTCAAAAT+AGG | - | chr2_1:4482649-4482668 | None:intergenic | 50.0% | |
| ! | ATAGGCCTTGGTGGATGAGT+TGG | - | chr2_1:4482135-4482154 | None:intergenic | 50.0% |
| !!! | TTTTGTGATGGTGGTGGTGG+TGG | - | chr2_1:4482165-4482184 | None:intergenic | 50.0% |
| !!! | GCCAAGTTTTGTGATGGTGG+TGG | - | chr2_1:4482171-4482190 | None:intergenic | 50.0% |
| !! | GGAGCCAAGTTTTGTGATGG+TGG | - | chr2_1:4482174-4482193 | None:intergenic | 50.0% |
| ! | GGAGCCAACTTGCTTCGATT+AGG | + | chr2_1:4482592-4482611 | Msa0189170:CDS | 50.0% |
| AATAGGACCGCGTCCAATCT+AGG | - | chr2_1:4482632-4482651 | None:intergenic | 50.0% | |
| ACGAGCGTGGAGCTCAAAAT+AGG | - | chr2_1:4482649-4482668 | None:intergenic | 50.0% | |
| CGTCGACAATGACACGAGGA+CGG | - | chr2_1:4481759-4481778 | None:intergenic | 55.0% | |
| ! | CGTCCTCGTGTCATTGTCGA+CGG | + | chr2_1:4481757-4481776 | Msa0189170:CDS | 55.0% |
| ACACCGTCGACAATGACACG+AGG | - | chr2_1:4481763-4481782 | None:intergenic | 55.0% | |
| TCAATGGCCGAAGGAGATGC+TGG | - | chr2_1:4482279-4482298 | None:intergenic | 55.0% | |
| GGCCATTGAAGCCTTGCCAA+TGG | + | chr2_1:4482290-4482309 | Msa0189170:CDS | 55.0% | |
| TGTAGCTCGTGACGGCATAC+GGG | - | chr2_1:4482468-4482487 | None:intergenic | 55.0% | |
| CTGTAGCTCGTGACGGCATA+CGG | - | chr2_1:4482469-4482488 | None:intergenic | 55.0% | |
| GTATGCCGTCACGAGCTACA+GGG | + | chr2_1:4482468-4482487 | Msa0189170:CDS | 55.0% | |
| GCAGGGTTTCTTGGGGTTTG+AGG | + | chr2_1:4482542-4482561 | Msa0189170:CDS | 55.0% | |
| GAGCAGTCCTAGATTGGACG+CGG | + | chr2_1:4482622-4482641 | Msa0189170:CDS | 55.0% | |
| TTCTACTACGAGCACGAGCG+TGG | - | chr2_1:4482662-4482681 | None:intergenic | 55.0% | |
| CGTCGACAATGACACGAGGA+CGG | - | chr2_1:4481759-4481778 | None:intergenic | 55.0% | |
| ! | CGTCCTCGTGTCATTGTCGA+CGG | + | chr2_1:4481757-4481776 | Msa0189170:CDS | 55.0% |
| ACACCGTCGACAATGACACG+AGG | - | chr2_1:4481763-4481782 | None:intergenic | 55.0% | |
| TCAATGGCCGAAGGAGATGC+TGG | - | chr2_1:4482279-4482298 | None:intergenic | 55.0% | |
| GGCCATTGAAGCCTTGCCAA+TGG | + | chr2_1:4482290-4482309 | Msa0189170:CDS | 55.0% | |
| TGTAGCTCGTGACGGCATAC+GGG | - | chr2_1:4482468-4482487 | None:intergenic | 55.0% | |
| CTGTAGCTCGTGACGGCATA+CGG | - | chr2_1:4482469-4482488 | None:intergenic | 55.0% | |
| GTATGCCGTCACGAGCTACA+GGG | + | chr2_1:4482468-4482487 | Msa0189170:CDS | 55.0% | |
| GCAGGGTTTCTTGGGGTTTG+AGG | + | chr2_1:4482542-4482561 | Msa0189170:CDS | 55.0% | |
| GAGCAGTCCTAGATTGGACG+CGG | + | chr2_1:4482622-4482641 | Msa0189170:CDS | 55.0% | |
| TTCTACTACGAGCACGAGCG+TGG | - | chr2_1:4482662-4482681 | None:intergenic | 55.0% | |
| GGTGGTGCAATAGGCCTTGG+TGG | - | chr2_1:4482144-4482163 | None:intergenic | 60.0% | |
| ! | GGTGGTGGTGCAATAGGCCT+TGG | - | chr2_1:4482147-4482166 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGGTGGTGCAAT+AGG | - | chr2_1:4482153-4482172 | None:intergenic | 60.0% |
| !! | TGTGATGGTGGTGGTGGTGG+TGG | - | chr2_1:4482162-4482181 | None:intergenic | 60.0% |
| GCCACCTCCAGCATCTCCTT+CGG | + | chr2_1:4482269-4482288 | Msa0189170:CDS | 60.0% | |
| ATGGCCGAAGGAGATGCTGG+AGG | - | chr2_1:4482276-4482295 | None:intergenic | 60.0% | |
| GGCAAGGCTTCAATGGCCGA+AGG | - | chr2_1:4482288-4482307 | None:intergenic | 60.0% | |
| GTAGCTCGTGACGGCATACG+GGG | - | chr2_1:4482467-4482486 | None:intergenic | 60.0% | |
| CGTATGCCGTCACGAGCTAC+AGG | + | chr2_1:4482467-4482486 | Msa0189170:CDS | 60.0% | |
| CAACGCCCTGTAGCTCGTGA+CGG | - | chr2_1:4482476-4482495 | None:intergenic | 60.0% | |
| GGTGGTGCAATAGGCCTTGG+TGG | - | chr2_1:4482144-4482163 | None:intergenic | 60.0% | |
| ! | GGTGGTGGTGCAATAGGCCT+TGG | - | chr2_1:4482147-4482166 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGGTGGTGCAAT+AGG | - | chr2_1:4482153-4482172 | None:intergenic | 60.0% |
| !! | TGTGATGGTGGTGGTGGTGG+TGG | - | chr2_1:4482162-4482181 | None:intergenic | 60.0% |
| GCCACCTCCAGCATCTCCTT+CGG | + | chr2_1:4482269-4482288 | Msa0189170:CDS | 60.0% | |
| ATGGCCGAAGGAGATGCTGG+AGG | - | chr2_1:4482276-4482295 | None:intergenic | 60.0% | |
| GGCAAGGCTTCAATGGCCGA+AGG | - | chr2_1:4482288-4482307 | None:intergenic | 60.0% | |
| GTAGCTCGTGACGGCATACG+GGG | - | chr2_1:4482467-4482486 | None:intergenic | 60.0% | |
| CGTATGCCGTCACGAGCTAC+AGG | + | chr2_1:4482467-4482486 | Msa0189170:CDS | 60.0% | |
| CAACGCCCTGTAGCTCGTGA+CGG | - | chr2_1:4482476-4482495 | None:intergenic | 60.0% | |
| GCCGAAGGAGATGCTGGAGG+TGG | - | chr2_1:4482273-4482292 | None:intergenic | 65.0% | |
| GCCGAAGGAGATGCTGGAGG+TGG | - | chr2_1:4482273-4482292 | None:intergenic | 65.0% | |
| GGAGATGCTGGAGGTGGCCC+AGG | - | chr2_1:4482267-4482286 | None:intergenic | 70.0% | |
| GGAGATGCTGGAGGTGGCCC+AGG | - | chr2_1:4482267-4482286 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 4481742 | 4482698 | 4481742 | ID=Msa0189170;Name=Msa0189170 |
| chr2_1 | mRNA | 4481742 | 4482698 | 4481742 | ID=Msa0189170-mRNA-1;Parent=Msa0189170;Name=Msa0189170-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|-1|0|1|-1|1|1|0|318 |
| chr2_1 | exon | 4481742 | 4482698 | 4481742 | ID=Msa0189170-mRNA-1:exon:1991;Parent=Msa0189170-mRNA-1 |
| chr2_1 | CDS | 4481742 | 4482698 | 4481742 | ID=Msa0189170-mRNA-1:cds;Parent=Msa0189170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
