Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452770 | sp|O22197|RHC1A_ARATH | 32.636 | 239 | 135 | 5 | 24 | 249 | 9 | 234 | 2.83e-31 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452770 | G7IJX1 | 94.671 | 319 | 13 | 1 | 1 | 319 | 1 | 315 | 0.0 | 584 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189170 | Msa1452770 | 0.983975 | 3.110269e-159 | -8.615850e-47 |
| Msa0270750 | Msa1452770 | 0.870519 | 1.372868e-66 | -8.615850e-47 |
| Msa0309470 | Msa1452770 | 0.888532 | 5.431443e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452770 | MtrunA17_Chr2g0278071 | 94.304 | 316 | 14 | 1 | 1 | 316 | 58 | 369 | 0.0 | 577 |
| Msa1452770 | MtrunA17_Chr3g0114781 | 33.977 | 259 | 136 | 6 | 18 | 249 | 15 | 265 | 8.95e-42 | 147 |
| Msa1452770 | MtrunA17_Chr1g0171791 | 40.972 | 144 | 78 | 2 | 144 | 281 | 99 | 241 | 1.03e-32 | 121 |
| Msa1452770 | MtrunA17_Chr3g0093621 | 32.780 | 241 | 134 | 8 | 23 | 249 | 8 | 234 | 1.24e-30 | 117 |
| Msa1452770 | MtrunA17_Chr5g0441191 | 53.933 | 89 | 40 | 1 | 161 | 249 | 157 | 244 | 3.68e-29 | 114 |
| Msa1452770 | MtrunA17_Chr4g0031931 | 54.545 | 88 | 40 | 0 | 162 | 249 | 138 | 225 | 1.89e-28 | 112 |
| Msa1452770 | MtrunA17_Chr2g0328531 | 29.437 | 231 | 148 | 5 | 23 | 249 | 14 | 233 | 2.16e-27 | 109 |
| Msa1452770 | MtrunA17_Chr1g0211891 | 57.895 | 76 | 31 | 1 | 175 | 249 | 163 | 238 | 2.20e-25 | 103 |
| Msa1452770 | MtrunA17_Chr6g0481701 | 50.000 | 92 | 44 | 2 | 160 | 249 | 188 | 279 | 6.65e-25 | 103 |
| Msa1452770 | MtrunA17_Chr3g0112071 | 53.521 | 71 | 33 | 0 | 179 | 249 | 170 | 240 | 4.89e-24 | 101 |
| Msa1452770 | MtrunA17_Chr5g0435561 | 52.857 | 70 | 33 | 0 | 180 | 249 | 168 | 237 | 2.68e-23 | 99.0 |
| Msa1452770 | MtrunA17_Chr3g0121201 | 46.739 | 92 | 43 | 2 | 160 | 250 | 196 | 282 | 4.12e-21 | 92.4 |
| Msa1452770 | MtrunA17_Chr7g0245341 | 43.158 | 95 | 52 | 2 | 157 | 249 | 295 | 389 | 2.27e-19 | 88.6 |
| Msa1452770 | MtrunA17_Chr1g0212081 | 50.000 | 78 | 37 | 1 | 172 | 249 | 233 | 308 | 2.50e-18 | 84.3 |
| Msa1452770 | MtrunA17_Chr4g0061811 | 54.167 | 72 | 32 | 1 | 179 | 249 | 333 | 404 | 6.95e-18 | 83.6 |
| Msa1452770 | MtrunA17_Chr5g0417501 | 37.363 | 91 | 53 | 2 | 159 | 249 | 73 | 159 | 9.12e-18 | 80.9 |
| Msa1452770 | MtrunA17_Chr1g0150571 | 42.169 | 83 | 44 | 2 | 176 | 255 | 201 | 282 | 1.98e-17 | 81.3 |
| Msa1452770 | MtrunA17_Chr6g0456041 | 49.333 | 75 | 37 | 1 | 176 | 249 | 244 | 318 | 1.53e-16 | 79.3 |
| Msa1452770 | MtrunA17_Chr6g0461611 | 34.862 | 109 | 52 | 4 | 155 | 249 | 177 | 280 | 1.89e-13 | 70.1 |
| Msa1452770 | MtrunA17_Chr3g0124731 | 44.286 | 70 | 37 | 1 | 180 | 249 | 166 | 233 | 3.81e-13 | 68.2 |
| Msa1452770 | MtrunA17_Chr1g0181921 | 46.377 | 69 | 33 | 1 | 181 | 249 | 189 | 253 | 6.83e-13 | 67.8 |
| Msa1452770 | MtrunA17_Chr4g0027761 | 38.710 | 93 | 47 | 4 | 184 | 269 | 104 | 193 | 9.43e-13 | 66.2 |
| Msa1452770 | MtrunA17_Chr5g0424081 | 48.333 | 60 | 30 | 1 | 191 | 249 | 209 | 268 | 4.50e-12 | 65.9 |
| Msa1452770 | MtrunA17_Chr2g0308971 | 52.381 | 42 | 20 | 0 | 205 | 246 | 109 | 150 | 6.50e-12 | 64.3 |
| Msa1452770 | MtrunA17_Chr6g0486651 | 41.026 | 78 | 42 | 4 | 175 | 249 | 88 | 164 | 3.99e-11 | 63.5 |
| Msa1452770 | MtrunA17_Chr3g0089261 | 42.857 | 70 | 32 | 2 | 180 | 249 | 279 | 340 | 6.98e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452770 | AT1G68180.1 | 32.258 | 310 | 127 | 10 | 1 | 307 | 1 | 230 | 1.77e-41 | 144 |
| Msa1452770 | AT1G60360.1 | 33.205 | 259 | 147 | 7 | 17 | 253 | 18 | 272 | 8.91e-34 | 126 |
| Msa1452770 | AT2G40830.1 | 32.636 | 239 | 135 | 5 | 24 | 249 | 9 | 234 | 2.87e-32 | 122 |
| Msa1452770 | AT2G40830.3 | 32.636 | 239 | 135 | 5 | 24 | 249 | 9 | 234 | 2.87e-32 | 122 |
| Msa1452770 | AT2G40830.4 | 32.636 | 239 | 135 | 5 | 24 | 249 | 9 | 234 | 2.87e-32 | 122 |
| Msa1452770 | AT2G40830.2 | 32.636 | 239 | 135 | 5 | 24 | 249 | 9 | 234 | 2.87e-32 | 122 |
| Msa1452770 | AT3G56580.3 | 32.051 | 234 | 139 | 5 | 24 | 249 | 9 | 230 | 4.25e-32 | 122 |
| Msa1452770 | AT3G56580.1 | 32.051 | 234 | 139 | 5 | 24 | 249 | 9 | 230 | 4.25e-32 | 122 |
| Msa1452770 | AT3G56580.2 | 32.051 | 234 | 139 | 5 | 24 | 249 | 9 | 230 | 4.25e-32 | 122 |
| Msa1452770 | AT3G10815.1 | 52.174 | 92 | 44 | 0 | 158 | 249 | 74 | 165 | 7.14e-29 | 110 |
| Msa1452770 | AT3G19950.2 | 31.746 | 252 | 135 | 9 | 23 | 249 | 79 | 318 | 5.15e-27 | 109 |
| Msa1452770 | AT3G19950.3 | 31.746 | 252 | 135 | 9 | 23 | 249 | 79 | 318 | 5.15e-27 | 109 |
| Msa1452770 | AT3G19950.1 | 31.746 | 252 | 135 | 9 | 23 | 249 | 21 | 260 | 5.17e-27 | 108 |
| Msa1452770 | AT5G59550.1 | 50.538 | 93 | 42 | 1 | 175 | 267 | 169 | 257 | 9.82e-27 | 109 |
| Msa1452770 | AT5G59550.2 | 50.538 | 93 | 42 | 1 | 175 | 267 | 274 | 362 | 1.57e-26 | 109 |
| Msa1452770 | AT3G46620.1 | 46.602 | 103 | 44 | 2 | 148 | 249 | 167 | 259 | 1.29e-25 | 105 |
| Msa1452770 | AT3G13430.4 | 51.948 | 77 | 33 | 1 | 173 | 249 | 197 | 269 | 2.86e-23 | 98.2 |
| Msa1452770 | AT3G13430.3 | 51.948 | 77 | 33 | 1 | 173 | 249 | 197 | 269 | 2.86e-23 | 98.2 |
| Msa1452770 | AT3G13430.1 | 51.948 | 77 | 33 | 1 | 173 | 249 | 197 | 269 | 2.86e-23 | 98.2 |
| Msa1452770 | AT3G13430.2 | 51.948 | 77 | 33 | 1 | 173 | 249 | 197 | 269 | 2.86e-23 | 98.2 |
| Msa1452770 | AT2G39720.1 | 55.844 | 77 | 32 | 1 | 179 | 253 | 173 | 249 | 1.69e-22 | 97.4 |
| Msa1452770 | AT2G39720.2 | 55.844 | 77 | 32 | 1 | 179 | 253 | 173 | 249 | 1.69e-22 | 97.4 |
| Msa1452770 | AT5G15820.1 | 55.405 | 74 | 32 | 1 | 177 | 249 | 262 | 335 | 2.32e-21 | 93.2 |
| Msa1452770 | AT3G02340.1 | 50.562 | 89 | 40 | 3 | 162 | 249 | 294 | 379 | 1.68e-20 | 91.7 |
| Msa1452770 | AT3G02340.2 | 50.562 | 89 | 40 | 3 | 162 | 249 | 294 | 379 | 1.68e-20 | 91.7 |
| Msa1452770 | AT1G55530.3 | 27.459 | 244 | 142 | 8 | 23 | 249 | 9 | 234 | 2.10e-20 | 90.1 |
| Msa1452770 | AT1G55530.1 | 48.000 | 75 | 34 | 1 | 175 | 249 | 198 | 267 | 6.08e-20 | 89.4 |
| Msa1452770 | AT1G55530.2 | 48.000 | 75 | 34 | 1 | 175 | 249 | 198 | 267 | 6.08e-20 | 89.4 |
| Msa1452770 | AT5G56340.1 | 46.154 | 91 | 43 | 2 | 160 | 249 | 218 | 303 | 6.51e-20 | 89.7 |
| Msa1452770 | AT5G01980.1 | 39.623 | 106 | 60 | 2 | 145 | 249 | 292 | 394 | 6.09e-19 | 87.4 |
| Msa1452770 | AT4G26400.2 | 43.333 | 90 | 45 | 2 | 161 | 249 | 201 | 285 | 7.94e-19 | 86.3 |
| Msa1452770 | AT4G26400.1 | 43.333 | 90 | 45 | 2 | 161 | 249 | 201 | 285 | 7.94e-19 | 86.3 |
| Msa1452770 | AT5G20910.1 | 40.217 | 92 | 52 | 1 | 161 | 249 | 183 | 274 | 2.20e-17 | 81.6 |
| Msa1452770 | AT5G60820.1 | 42.268 | 97 | 50 | 2 | 157 | 249 | 322 | 416 | 7.50e-17 | 81.3 |
| Msa1452770 | AT1G26800.1 | 42.466 | 73 | 38 | 1 | 177 | 249 | 89 | 157 | 8.52e-17 | 78.2 |
| Msa1452770 | AT1G14200.1 | 37.624 | 101 | 58 | 2 | 150 | 249 | 57 | 153 | 4.85e-16 | 75.5 |
| Msa1452770 | AT5G08139.1 | 48.000 | 75 | 36 | 2 | 177 | 249 | 280 | 353 | 6.01e-16 | 78.2 |
| Msa1452770 | AT5G64920.1 | 45.333 | 75 | 41 | 0 | 179 | 253 | 231 | 305 | 1.98e-15 | 76.3 |
| Msa1452770 | AT3G60080.1 | 44.444 | 72 | 32 | 2 | 186 | 249 | 142 | 213 | 8.41e-15 | 74.3 |
| Msa1452770 | AT2G44330.1 | 45.714 | 70 | 32 | 1 | 186 | 249 | 71 | 140 | 1.71e-13 | 68.2 |
| Msa1452770 | AT3G30460.1 | 36.957 | 92 | 53 | 2 | 161 | 250 | 54 | 142 | 5.93e-13 | 65.9 |
| Msa1452770 | AT3G30460.2 | 36.957 | 92 | 53 | 2 | 161 | 250 | 90 | 178 | 8.74e-13 | 66.2 |
| Msa1452770 | AT5G02750.1 | 52.000 | 50 | 24 | 0 | 200 | 249 | 209 | 258 | 2.28e-11 | 63.9 |
| Msa1452770 | AT2G03000.1 | 41.892 | 74 | 36 | 3 | 180 | 252 | 461 | 528 | 4.87e-11 | 63.9 |
| Msa1452770 | AT2G01735.1 | 37.037 | 81 | 49 | 2 | 177 | 256 | 280 | 359 | 7.62e-11 | 62.8 |
Find 90 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGCTGATCATTCTCATTT+TGG | 0.076885 | tig0034145:-5103 | Msa1452770:intergenic |
| TGAGAACCTTCCACTATTTC+TGG | 0.165081 | tig0034145:+4367 | Msa1452770:CDS |
| TCTTTGCATATAGGACAATT+TGG | 0.213259 | tig0034145:-4924 | Msa1452770:intergenic |
| AATTTACAAGCAGCATTAAT+TGG | 0.221425 | tig0034145:+5144 | Msa1452770:CDS |
| GGGTCCATGTTTCTGTTGTT+AGG | 0.244692 | tig0034145:-4525 | Msa1452770:intergenic |
| CAAGCAGCATTAATTGGATT+TGG | 0.248709 | tig0034145:+5150 | Msa1452770:CDS |
| AAACAACACAACACCACAAT+GGG | 0.266552 | tig0034145:+4620 | Msa1452770:CDS |
| TCCTTCTACTAACCAGTTAA+TGG | 0.270630 | tig0034145:+4551 | Msa1452770:CDS |
| ACAAATACCATTCAAAATTA+TGG | 0.274205 | tig0034145:+4426 | Msa1452770:CDS |
| GAATGATCAGCAGGGTTTCT+TGG | 0.309653 | tig0034145:+5112 | Msa1452770:CDS |
| AATGATCAGCAGGGTTTCTT+GGG | 0.310221 | tig0034145:+5113 | Msa1452770:CDS |
| CGCAGTTGATGGAAGCAATA+TGG | 0.332701 | tig0034145:-4459 | Msa1452770:intergenic |
| TGAAGCCTTGCCAATGGTTA+AGG | 0.364501 | tig0034145:+4875 | Msa1452770:CDS |
| ACGAGCGTGGAGCTCAAAAT+AGG | 0.367783 | tig0034145:-5225 | Msa1452770:intergenic |
| TCATTAGATGAGTTCTTTGA+TGG | 0.373604 | tig0034145:+4798 | Msa1452770:CDS |
| CAAGTTCATAACGCAGTTGA+TGG | 0.375121 | tig0034145:-4470 | Msa1452770:intergenic |
| CTGTAGCTCGTGACGGCATA+CGG | 0.378221 | tig0034145:-5045 | Msa1452770:intergenic |
| ATTGTGGTGTTGTGTTGTTT+TGG | 0.388494 | tig0034145:-4617 | Msa1452770:intergenic |
| AGAAGTAAGATCAAACTCTA+AGG | 0.394477 | tig0034145:+5257 | Msa1452770:CDS |
| GGTCCATGTTTCTGTTGTTA+GGG | 0.400373 | tig0034145:-4524 | Msa1452770:intergenic |
| AATAGGACCGCGTCCAATCT+AGG | 0.407821 | tig0034145:-5208 | Msa1452770:intergenic |
| CGTATGCCGTCACGAGCTAC+AGG | 0.415344 | tig0034145:+5046 | Msa1452770:CDS |
| CCAAAATGAGAATGATCAGC+AGG | 0.417579 | tig0034145:+5103 | Msa1452770:CDS |
| AAGCTAAGCTACCCATTAAC+TGG | 0.418537 | tig0034145:-4563 | Msa1452770:intergenic |
| GCAGGGTTTCTTGGGGTTTG+AGG | 0.423615 | tig0034145:+5121 | Msa1452770:CDS |
| CCCATTAACTGGTTAGTAGA+AGG | 0.433887 | tig0034145:-4552 | Msa1452770:intergenic |
| TGGTCTTGTCTTCTAAGAGA+TGG | 0.437407 | tig0034145:-4597 | Msa1452770:intergenic |
| CAATCTAGGACTGCTCGAAT+AGG | 0.437852 | tig0034145:-5194 | Msa1452770:intergenic |
| GGTGGTGGTGCAATAGGCCT+TGG | 0.439267 | tig0034145:-4720 | Msa1452770:intergenic |
| ATTCTGACTGCATTCTCCCT+TGG | 0.441720 | tig0034145:+5000 | Msa1452770:CDS |
| TCAAACTCATCTTTGCATAT+AGG | 0.442911 | tig0034145:-4933 | Msa1452770:intergenic |
| AACCATTGGCAAGGCTTCAA+TGG | 0.443378 | tig0034145:-4871 | Msa1452770:intergenic |
| CCTTCTACTAACCAGTTAAT+GGG | 0.452199 | tig0034145:+4552 | Msa1452770:CDS |
| GGAGATGCTGGAGGTGGCCC+AGG | 0.457199 | tig0034145:-4843 | Msa1452770:intergenic |
| GGAGCCAACTTGCTTCGATT+AGG | 0.457339 | tig0034145:+5171 | Msa1452770:CDS |
| TCAAAGAACTCATCTAATGA+AGG | 0.479520 | tig0034145:-4795 | Msa1452770:intergenic |
| CATTAGATGAGTTCTTTGAT+GGG | 0.483678 | tig0034145:+4799 | Msa1452770:CDS |
| TATATGCAAAGATGAGTTTG+AGG | 0.486390 | tig0034145:+4935 | Msa1452770:CDS |
| ACCACCACCATCACAAAACT+TGG | 0.486668 | tig0034145:+4746 | Msa1452770:CDS |
| GGTGGTGCAATAGGCCTTGG+TGG | 0.488698 | tig0034145:-4717 | Msa1452770:intergenic |
| CTATTCGAGCAGTCCTAGAT+TGG | 0.488931 | tig0034145:+5195 | Msa1452770:CDS |
| GCCACCTCCAGCATCTCCTT+CGG | 0.489432 | tig0034145:+4848 | Msa1452770:CDS |
| AAAACAACACAACACCACAA+TGG | 0.496778 | tig0034145:+4619 | Msa1452770:CDS |
| TCAATGGCCGAAGGAGATGC+TGG | 0.500012 | tig0034145:-4855 | None:intergenic |
| TGTAGCTCGTGACGGCATAC+GGG | 0.506136 | tig0034145:-5044 | None:intergenic |
| AATTGAGACACCAGAAATAG+TGG | 0.510710 | tig0034145:-4377 | None:intergenic |
| GCCGAAGGAGATGCTGGAGG+TGG | 0.514613 | tig0034145:-4849 | None:intergenic |
| GGGTCATTCATAAGAAGTCT+TGG | 0.524227 | tig0034145:-4504 | None:intergenic |
| TCCAATAATATGTCTCTGAC+AGG | 0.524599 | tig0034145:+4309 | None:intergenic |
| GCTTCTGTTACCTTAACCAT+TGG | 0.525756 | tig0034145:-4885 | Msa1452770:intergenic |
| CAAAGAACTCATCTAATGAA+GGG | 0.526024 | tig0034145:-4794 | Msa1452770:intergenic |
| GTTATGAACTTGATATATCA+AGG | 0.531624 | tig0034145:+4481 | Msa1452770:CDS |
| GTCTTCTAAGAGATGGATCA+AGG | 0.535188 | tig0034145:-4590 | Msa1452770:intergenic |
| AAGGGAGAATGCAGTCAGAA+TGG | 0.535813 | tig0034145:-4998 | Msa1452770:intergenic |
| TCATGTTCTGTTCCCCATTG+TGG | 0.540794 | tig0034145:-4633 | Msa1452770:intergenic |
| AACTGGTTAGTAGAAGGAGG+AGG | 0.540994 | tig0034145:-4546 | Msa1452770:intergenic |
| GTGTTATGCATTTGAAGCCA+AGG | 0.541607 | tig0034145:-5017 | Msa1452770:intergenic |
| TTCTACTACGAGCACGAGCG+TGG | 0.546469 | tig0034145:-5238 | Msa1452770:intergenic |
| AAAATCAAAATCCACAAGCA+TGG | 0.547418 | tig0034145:+4664 | Msa1452770:CDS |
| ATAGGCCTTGGTGGATGAGT+TGG | 0.551028 | tig0034145:-4708 | Msa1452770:intergenic |
| GGCCATTGAAGCCTTGCCAA+TGG | 0.553512 | tig0034145:+4869 | Msa1452770:CDS |
| CGTCCTCGTGTCATTGTCGA+CGG | 0.567011 | tig0034145:+4333 | Msa1452770:CDS |
| CTTAGTGTAATCCATGCTTG+TGG | 0.570113 | tig0034145:-4675 | Msa1452770:intergenic |
| CAAAATGAGAATGATCAGCA+GGG | 0.573456 | tig0034145:+5104 | Msa1452770:CDS |
| AGATGAGTTTGAGGTTGATG+TGG | 0.576181 | tig0034145:+4944 | Msa1452770:CDS |
| TGTTACCTTAACCATTGGCA+AGG | 0.594184 | tig0034145:-4880 | Msa1452770:intergenic |
| TGTTATGCATTTGAAGCCAA+GGG | 0.598250 | tig0034145:-5016 | Msa1452770:intergenic |
| ATTAGATGAGTTCTTTGATG+GGG | 0.601899 | tig0034145:+4800 | Msa1452770:CDS |
| TAGGCCTAATCGAAGCAAGT+TGG | 0.610681 | tig0034145:-5175 | Msa1452770:intergenic |
| GAATGGTAGAAATGTTTGCA+TGG | 0.616001 | tig0034145:-4981 | Msa1452770:intergenic |
| ATGATCAGCAGGGTTTCTTG+GGG | 0.617582 | tig0034145:+5114 | Msa1452770:CDS |
| ATGGTATTCTGACAGTACGT+TGG | 0.622474 | tig0034145:-4401 | Msa1452770:intergenic |
| AAAGAACTCATCTAATGAAG+GGG | 0.623408 | tig0034145:-4793 | Msa1452770:intergenic |
| AACAACACAACACCACAATG+GGG | 0.628137 | tig0034145:+4621 | Msa1452770:CDS |
| ATTCACAACAATATTAGACC+TGG | 0.629704 | tig0034145:+4825 | Msa1452770:CDS |
| GGCAAGGCTTCAATGGCCGA+AGG | 0.631031 | tig0034145:-4864 | Msa1452770:intergenic |
| CAACGCCCTGTAGCTCGTGA+CGG | 0.639056 | tig0034145:-5052 | Msa1452770:intergenic |
| TGACCCTAACAACAGAAACA+TGG | 0.639124 | tig0034145:+4521 | Msa1452770:CDS |
| ACTGGTTAGTAGAAGGAGGA+GGG | 0.643379 | tig0034145:-4545 | Msa1452770:intergenic |
| GTTTCAATGTCATTGAGCTG+AGG | 0.643651 | tig0034145:-4771 | Msa1452770:intergenic |
| GTAGCTCGTGACGGCATACG+GGG | 0.647054 | tig0034145:-5043 | Msa1452770:intergenic |
| GAGACACCAGAAATAGTGGA+AGG | 0.648767 | tig0034145:-4373 | Msa1452770:intergenic |
| GTATGCCGTCACGAGCTACA+GGG | 0.649158 | tig0034145:+5047 | Msa1452770:CDS |
| ATTAACTGGTTAGTAGAAGG+AGG | 0.655639 | tig0034145:-4549 | Msa1452770:intergenic |
| CGTCGACAATGACACGAGGA+CGG | 0.658835 | tig0034145:-4332 | Msa1452770:intergenic |
| TTCACAACAATATTAGACCT+GGG | 0.671187 | tig0034145:+4826 | Msa1452770:CDS |
| GAGCAGTCCTAGATTGGACG+CGG | 0.690002 | tig0034145:+5201 | Msa1452770:CDS |
| ATGGCCGAAGGAGATGCTGG+AGG | 0.719854 | tig0034145:-4852 | Msa1452770:intergenic |
| TAAGACCAACTCATCCACCA+AGG | 0.753067 | tig0034145:+4703 | Msa1452770:CDS |
| ACACCGTCGACAATGACACG+AGG | 0.757808 | tig0034145:-4336 | Msa1452760:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATACCATTCAAAATTA+TGG | + | tig0034145:4426-4445 | Msa1452770:CDS | 20.0% |
| !! | ACAAATACCATTCAAAATTA+TGG | + | tig0034145:4426-4445 | Msa1452770:CDS | 20.0% |
| !!! | TTTTGAATGGTATTTGTTGA+TGG | - | tig0034145:4423-4442 | Msa1452770:intergenic | 25.0% |
| ! | GTTATGAACTTGATATATCA+AGG | + | tig0034145:4481-4500 | Msa1452770:CDS | 25.0% |
| ! | AATTTACAAGCAGCATTAAT+TGG | + | tig0034145:5144-5163 | Msa1452770:CDS | 25.0% |
| !!! | TTTTGAATGGTATTTGTTGA+TGG | - | tig0034145:4423-4442 | Msa1452770:intergenic | 25.0% |
| ! | GTTATGAACTTGATATATCA+AGG | + | tig0034145:4481-4500 | Msa1452770:CDS | 25.0% |
| ! | AATTTACAAGCAGCATTAAT+TGG | + | tig0034145:5144-5163 | Msa1452770:CDS | 25.0% |
| ! | GAAAGAGCCATAATTTTGAA+TGG | - | tig0034145:4436-4455 | Msa1452770:intergenic | 30.0% |
| AAAATCAAAATCCACAAGCA+TGG | + | tig0034145:4664-4683 | Msa1452770:CDS | 30.0% | |
| AAAGAACTCATCTAATGAAG+GGG | - | tig0034145:4796-4815 | Msa1452770:intergenic | 30.0% | |
| CAAAGAACTCATCTAATGAA+GGG | - | tig0034145:4797-4816 | Msa1452770:intergenic | 30.0% | |
| TCAAAGAACTCATCTAATGA+AGG | - | tig0034145:4798-4817 | Msa1452770:intergenic | 30.0% | |
| TCATTAGATGAGTTCTTTGA+TGG | + | tig0034145:4798-4817 | Msa1452770:CDS | 30.0% | |
| CATTAGATGAGTTCTTTGAT+GGG | + | tig0034145:4799-4818 | Msa1452770:CDS | 30.0% | |
| ATTAGATGAGTTCTTTGATG+GGG | + | tig0034145:4800-4819 | Msa1452770:CDS | 30.0% | |
| ATTCACAACAATATTAGACC+TGG | + | tig0034145:4825-4844 | Msa1452770:CDS | 30.0% | |
| TTCACAACAATATTAGACCT+GGG | + | tig0034145:4826-4845 | Msa1452770:CDS | 30.0% | |
| TCTTTGCATATAGGACAATT+TGG | - | tig0034145:4927-4946 | Msa1452770:intergenic | 30.0% | |
| TCAAACTCATCTTTGCATAT+AGG | - | tig0034145:4936-4955 | Msa1452770:intergenic | 30.0% | |
| TATATGCAAAGATGAGTTTG+AGG | + | tig0034145:4935-4954 | Msa1452770:CDS | 30.0% | |
| !! | TCTCATTTTGGAAAAAGTAG+TGG | - | tig0034145:5094-5113 | Msa1452770:intergenic | 30.0% |
| ! | GAAAGAGCCATAATTTTGAA+TGG | - | tig0034145:4436-4455 | Msa1452770:intergenic | 30.0% |
| AAAATCAAAATCCACAAGCA+TGG | + | tig0034145:4664-4683 | Msa1452770:CDS | 30.0% | |
| AAAGAACTCATCTAATGAAG+GGG | - | tig0034145:4796-4815 | Msa1452770:intergenic | 30.0% | |
| CAAAGAACTCATCTAATGAA+GGG | - | tig0034145:4797-4816 | Msa1452770:intergenic | 30.0% | |
| TCAAAGAACTCATCTAATGA+AGG | - | tig0034145:4798-4817 | Msa1452770:intergenic | 30.0% | |
| TCATTAGATGAGTTCTTTGA+TGG | + | tig0034145:4798-4817 | Msa1452770:CDS | 30.0% | |
| CATTAGATGAGTTCTTTGAT+GGG | + | tig0034145:4799-4818 | Msa1452770:CDS | 30.0% | |
| ATTAGATGAGTTCTTTGATG+GGG | + | tig0034145:4800-4819 | Msa1452770:CDS | 30.0% | |
| ATTCACAACAATATTAGACC+TGG | + | tig0034145:4825-4844 | Msa1452770:CDS | 30.0% | |
| TTCACAACAATATTAGACCT+GGG | + | tig0034145:4826-4845 | Msa1452770:CDS | 30.0% | |
| TCTTTGCATATAGGACAATT+TGG | - | tig0034145:4927-4946 | Msa1452770:intergenic | 30.0% | |
| TCAAACTCATCTTTGCATAT+AGG | - | tig0034145:4936-4955 | Msa1452770:intergenic | 30.0% | |
| TATATGCAAAGATGAGTTTG+AGG | + | tig0034145:4935-4954 | Msa1452770:CDS | 30.0% | |
| !! | TCTCATTTTGGAAAAAGTAG+TGG | - | tig0034145:5094-5113 | Msa1452770:intergenic | 30.0% |
| AATTGAGACACCAGAAATAG+TGG | - | tig0034145:4380-4399 | Msa1452770:intergenic | 35.0% | |
| ATTAACTGGTTAGTAGAAGG+AGG | - | tig0034145:4552-4571 | Msa1452770:intergenic | 35.0% | |
| TCCTTCTACTAACCAGTTAA+TGG | + | tig0034145:4551-4570 | Msa1452770:CDS | 35.0% | |
| CCTTCTACTAACCAGTTAAT+GGG | + | tig0034145:4552-4571 | Msa1452770:CDS | 35.0% | |
| !!! | ATTGTGGTGTTGTGTTGTTT+TGG | - | tig0034145:4620-4639 | Msa1452770:intergenic | 35.0% |
| AAAACAACACAACACCACAA+TGG | + | tig0034145:4619-4638 | Msa1452770:CDS | 35.0% | |
| AAACAACACAACACCACAAT+GGG | + | tig0034145:4620-4639 | Msa1452770:CDS | 35.0% | |
| GAATGGTAGAAATGTTTGCA+TGG | - | tig0034145:4984-5003 | Msa1452770:intergenic | 35.0% | |
| ! | TGTTATGCATTTGAAGCCAA+GGG | - | tig0034145:5019-5038 | Msa1452770:intergenic | 35.0% |
| CAAAATGAGAATGATCAGCA+GGG | + | tig0034145:5104-5123 | Msa1452770:CDS | 35.0% | |
| CAAGCAGCATTAATTGGATT+TGG | + | tig0034145:5150-5169 | Msa1452770:CDS | 35.0% | |
| AATTGAGACACCAGAAATAG+TGG | - | tig0034145:4380-4399 | Msa1452770:intergenic | 35.0% | |
| ATTAACTGGTTAGTAGAAGG+AGG | - | tig0034145:4552-4571 | Msa1452770:intergenic | 35.0% | |
| TCCTTCTACTAACCAGTTAA+TGG | + | tig0034145:4551-4570 | Msa1452770:CDS | 35.0% | |
| CCTTCTACTAACCAGTTAAT+GGG | + | tig0034145:4552-4571 | Msa1452770:CDS | 35.0% | |
| !!! | ATTGTGGTGTTGTGTTGTTT+TGG | - | tig0034145:4620-4639 | Msa1452770:intergenic | 35.0% |
| AAAACAACACAACACCACAA+TGG | + | tig0034145:4619-4638 | Msa1452770:CDS | 35.0% | |
| AAACAACACAACACCACAAT+GGG | + | tig0034145:4620-4639 | Msa1452770:CDS | 35.0% | |
| GAATGGTAGAAATGTTTGCA+TGG | - | tig0034145:4984-5003 | Msa1452770:intergenic | 35.0% | |
| ! | TGTTATGCATTTGAAGCCAA+GGG | - | tig0034145:5019-5038 | Msa1452770:intergenic | 35.0% |
| CAAAATGAGAATGATCAGCA+GGG | + | tig0034145:5104-5123 | Msa1452770:CDS | 35.0% | |
| CAAGCAGCATTAATTGGATT+TGG | + | tig0034145:5150-5169 | Msa1452770:CDS | 35.0% | |
| TGAGAACCTTCCACTATTTC+TGG | + | tig0034145:4367-4386 | Msa1452770:CDS | 40.0% | |
| ATGGTATTCTGACAGTACGT+TGG | - | tig0034145:4404-4423 | Msa1452770:intergenic | 40.0% | |
| CAAGTTCATAACGCAGTTGA+TGG | - | tig0034145:4473-4492 | Msa1452770:intergenic | 40.0% | |
| GGGTCATTCATAAGAAGTCT+TGG | - | tig0034145:4507-4526 | Msa1452770:intergenic | 40.0% | |
| TGACCCTAACAACAGAAACA+TGG | + | tig0034145:4521-4540 | Msa1452770:CDS | 40.0% | |
| ! | GGTCCATGTTTCTGTTGTTA+GGG | - | tig0034145:4527-4546 | Msa1452770:intergenic | 40.0% |
| CCCATTAACTGGTTAGTAGA+AGG | - | tig0034145:4555-4574 | Msa1452770:intergenic | 40.0% | |
| AAGCTAAGCTACCCATTAAC+TGG | - | tig0034145:4566-4585 | Msa1452770:intergenic | 40.0% | |
| ! | GTCTTCTAAGAGATGGATCA+AGG | - | tig0034145:4593-4612 | Msa1452770:intergenic | 40.0% |
| !! | TGGTCTTGTCTTCTAAGAGA+TGG | - | tig0034145:4600-4619 | Msa1452770:intergenic | 40.0% |
| AACAACACAACACCACAATG+GGG | + | tig0034145:4621-4640 | Msa1452770:CDS | 40.0% | |
| CTTAGTGTAATCCATGCTTG+TGG | - | tig0034145:4678-4697 | Msa1452770:intergenic | 40.0% | |
| GTTTCAATGTCATTGAGCTG+AGG | - | tig0034145:4774-4793 | Msa1452770:intergenic | 40.0% | |
| TGTTACCTTAACCATTGGCA+AGG | - | tig0034145:4883-4902 | Msa1452770:intergenic | 40.0% | |
| GCTTCTGTTACCTTAACCAT+TGG | - | tig0034145:4888-4907 | Msa1452770:intergenic | 40.0% | |
| !! | AGATGAGTTTGAGGTTGATG+TGG | + | tig0034145:4944-4963 | Msa1452770:CDS | 40.0% |
| ! | GTGTTATGCATTTGAAGCCA+AGG | - | tig0034145:5020-5039 | Msa1452770:intergenic | 40.0% |
| ! | CCTGCTGATCATTCTCATTT+TGG | - | tig0034145:5106-5125 | Msa1452770:intergenic | 40.0% |
| CCAAAATGAGAATGATCAGC+AGG | + | tig0034145:5103-5122 | Msa1452770:CDS | 40.0% | |
| AATGATCAGCAGGGTTTCTT+GGG | + | tig0034145:5113-5132 | Msa1452770:CDS | 40.0% | |
| TGAGAACCTTCCACTATTTC+TGG | + | tig0034145:4367-4386 | Msa1452770:CDS | 40.0% | |
| ATGGTATTCTGACAGTACGT+TGG | - | tig0034145:4404-4423 | Msa1452770:intergenic | 40.0% | |
| CAAGTTCATAACGCAGTTGA+TGG | - | tig0034145:4473-4492 | Msa1452770:intergenic | 40.0% | |
| GGGTCATTCATAAGAAGTCT+TGG | - | tig0034145:4507-4526 | Msa1452770:intergenic | 40.0% | |
| TGACCCTAACAACAGAAACA+TGG | + | tig0034145:4521-4540 | Msa1452770:CDS | 40.0% | |
| ! | GGTCCATGTTTCTGTTGTTA+GGG | - | tig0034145:4527-4546 | Msa1452770:intergenic | 40.0% |
| CCCATTAACTGGTTAGTAGA+AGG | - | tig0034145:4555-4574 | Msa1452770:intergenic | 40.0% | |
| AAGCTAAGCTACCCATTAAC+TGG | - | tig0034145:4566-4585 | Msa1452770:intergenic | 40.0% | |
| ! | GTCTTCTAAGAGATGGATCA+AGG | - | tig0034145:4593-4612 | Msa1452770:intergenic | 40.0% |
| !! | TGGTCTTGTCTTCTAAGAGA+TGG | - | tig0034145:4600-4619 | Msa1452770:intergenic | 40.0% |
| AACAACACAACACCACAATG+GGG | + | tig0034145:4621-4640 | Msa1452770:CDS | 40.0% | |
| CTTAGTGTAATCCATGCTTG+TGG | - | tig0034145:4678-4697 | Msa1452770:intergenic | 40.0% | |
| GTTTCAATGTCATTGAGCTG+AGG | - | tig0034145:4774-4793 | Msa1452770:intergenic | 40.0% | |
| TGTTACCTTAACCATTGGCA+AGG | - | tig0034145:4883-4902 | Msa1452770:intergenic | 40.0% | |
| GCTTCTGTTACCTTAACCAT+TGG | - | tig0034145:4888-4907 | Msa1452770:intergenic | 40.0% | |
| !! | AGATGAGTTTGAGGTTGATG+TGG | + | tig0034145:4944-4963 | Msa1452770:CDS | 40.0% |
| ! | GTGTTATGCATTTGAAGCCA+AGG | - | tig0034145:5020-5039 | Msa1452770:intergenic | 40.0% |
| ! | CCTGCTGATCATTCTCATTT+TGG | - | tig0034145:5106-5125 | Msa1452770:intergenic | 40.0% |
| CCAAAATGAGAATGATCAGC+AGG | + | tig0034145:5103-5122 | Msa1452770:CDS | 40.0% | |
| AATGATCAGCAGGGTTTCTT+GGG | + | tig0034145:5113-5132 | Msa1452770:CDS | 40.0% | |
| ! | GAGACACCAGAAATAGTGGA+AGG | - | tig0034145:4376-4395 | Msa1452770:intergenic | 45.0% |
| !! | CGCAGTTGATGGAAGCAATA+TGG | - | tig0034145:4462-4481 | Msa1452770:intergenic | 45.0% |
| ! | GGGTCCATGTTTCTGTTGTT+AGG | - | tig0034145:4528-4547 | Msa1452770:intergenic | 45.0% |
| ACTGGTTAGTAGAAGGAGGA+GGG | - | tig0034145:4548-4567 | Msa1452770:intergenic | 45.0% | |
| AACTGGTTAGTAGAAGGAGG+AGG | - | tig0034145:4549-4568 | Msa1452770:intergenic | 45.0% | |
| TCATGTTCTGTTCCCCATTG+TGG | - | tig0034145:4636-4655 | Msa1452770:intergenic | 45.0% | |
| TAAGACCAACTCATCCACCA+AGG | + | tig0034145:4703-4722 | Msa1452770:CDS | 45.0% | |
| !!! | AAGTTTTGTGATGGTGGTGG+TGG | - | tig0034145:4747-4766 | Msa1452770:intergenic | 45.0% |
| ACCACCACCATCACAAAACT+TGG | + | tig0034145:4746-4765 | Msa1452770:CDS | 45.0% | |
| !! | TGAGGAGCCAAGTTTTGTGA+TGG | - | tig0034145:4756-4775 | Msa1452770:intergenic | 45.0% |
| AACCATTGGCAAGGCTTCAA+TGG | - | tig0034145:4874-4893 | Msa1452770:intergenic | 45.0% | |
| TGAAGCCTTGCCAATGGTTA+AGG | + | tig0034145:4875-4894 | Msa1452770:CDS | 45.0% | |
| AAGGGAGAATGCAGTCAGAA+TGG | - | tig0034145:5001-5020 | Msa1452770:intergenic | 45.0% | |
| ATTCTGACTGCATTCTCCCT+TGG | + | tig0034145:5000-5019 | Msa1452770:CDS | 45.0% | |
| GAATGATCAGCAGGGTTTCT+TGG | + | tig0034145:5112-5131 | Msa1452770:CDS | 45.0% | |
| ATGATCAGCAGGGTTTCTTG+GGG | + | tig0034145:5114-5133 | Msa1452770:CDS | 45.0% | |
| TAGGCCTAATCGAAGCAAGT+TGG | - | tig0034145:5178-5197 | Msa1452770:intergenic | 45.0% | |
| ! | CAATCTAGGACTGCTCGAAT+AGG | - | tig0034145:5197-5216 | Msa1452770:intergenic | 45.0% |
| CTATTCGAGCAGTCCTAGAT+TGG | + | tig0034145:5195-5214 | Msa1452770:CDS | 45.0% | |
| ! | GAGACACCAGAAATAGTGGA+AGG | - | tig0034145:4376-4395 | Msa1452770:intergenic | 45.0% |
| !! | CGCAGTTGATGGAAGCAATA+TGG | - | tig0034145:4462-4481 | Msa1452770:intergenic | 45.0% |
| ! | GGGTCCATGTTTCTGTTGTT+AGG | - | tig0034145:4528-4547 | Msa1452770:intergenic | 45.0% |
| ACTGGTTAGTAGAAGGAGGA+GGG | - | tig0034145:4548-4567 | Msa1452770:intergenic | 45.0% | |
| AACTGGTTAGTAGAAGGAGG+AGG | - | tig0034145:4549-4568 | Msa1452770:intergenic | 45.0% | |
| TCATGTTCTGTTCCCCATTG+TGG | - | tig0034145:4636-4655 | Msa1452770:intergenic | 45.0% | |
| TAAGACCAACTCATCCACCA+AGG | + | tig0034145:4703-4722 | Msa1452770:CDS | 45.0% | |
| !!! | AAGTTTTGTGATGGTGGTGG+TGG | - | tig0034145:4747-4766 | Msa1452770:intergenic | 45.0% |
| ACCACCACCATCACAAAACT+TGG | + | tig0034145:4746-4765 | Msa1452770:CDS | 45.0% | |
| !! | TGAGGAGCCAAGTTTTGTGA+TGG | - | tig0034145:4756-4775 | Msa1452770:intergenic | 45.0% |
| AACCATTGGCAAGGCTTCAA+TGG | - | tig0034145:4874-4893 | Msa1452770:intergenic | 45.0% | |
| TGAAGCCTTGCCAATGGTTA+AGG | + | tig0034145:4875-4894 | Msa1452770:CDS | 45.0% | |
| AAGGGAGAATGCAGTCAGAA+TGG | - | tig0034145:5001-5020 | Msa1452770:intergenic | 45.0% | |
| ATTCTGACTGCATTCTCCCT+TGG | + | tig0034145:5000-5019 | Msa1452770:CDS | 45.0% | |
| GAATGATCAGCAGGGTTTCT+TGG | + | tig0034145:5112-5131 | Msa1452770:CDS | 45.0% | |
| ATGATCAGCAGGGTTTCTTG+GGG | + | tig0034145:5114-5133 | Msa1452770:CDS | 45.0% | |
| TAGGCCTAATCGAAGCAAGT+TGG | - | tig0034145:5178-5197 | Msa1452770:intergenic | 45.0% | |
| ! | CAATCTAGGACTGCTCGAAT+AGG | - | tig0034145:5197-5216 | Msa1452770:intergenic | 45.0% |
| CTATTCGAGCAGTCCTAGAT+TGG | + | tig0034145:5195-5214 | Msa1452770:CDS | 45.0% | |
| ! | ATAGGCCTTGGTGGATGAGT+TGG | - | tig0034145:4711-4730 | Msa1452770:intergenic | 50.0% |
| !!! | TTTTGTGATGGTGGTGGTGG+TGG | - | tig0034145:4744-4763 | Msa1452770:intergenic | 50.0% |
| !!! | GCCAAGTTTTGTGATGGTGG+TGG | - | tig0034145:4750-4769 | Msa1452770:intergenic | 50.0% |
| !! | GGAGCCAAGTTTTGTGATGG+TGG | - | tig0034145:4753-4772 | Msa1452770:intergenic | 50.0% |
| ! | GGAGCCAACTTGCTTCGATT+AGG | + | tig0034145:5171-5190 | Msa1452770:CDS | 50.0% |
| AATAGGACCGCGTCCAATCT+AGG | - | tig0034145:5211-5230 | Msa1452770:intergenic | 50.0% | |
| ACGAGCGTGGAGCTCAAAAT+AGG | - | tig0034145:5228-5247 | Msa1452770:intergenic | 50.0% | |
| ! | ATAGGCCTTGGTGGATGAGT+TGG | - | tig0034145:4711-4730 | Msa1452770:intergenic | 50.0% |
| !!! | TTTTGTGATGGTGGTGGTGG+TGG | - | tig0034145:4744-4763 | Msa1452770:intergenic | 50.0% |
| !!! | GCCAAGTTTTGTGATGGTGG+TGG | - | tig0034145:4750-4769 | Msa1452770:intergenic | 50.0% |
| !! | GGAGCCAAGTTTTGTGATGG+TGG | - | tig0034145:4753-4772 | Msa1452770:intergenic | 50.0% |
| ! | GGAGCCAACTTGCTTCGATT+AGG | + | tig0034145:5171-5190 | Msa1452770:CDS | 50.0% |
| AATAGGACCGCGTCCAATCT+AGG | - | tig0034145:5211-5230 | Msa1452770:intergenic | 50.0% | |
| ACGAGCGTGGAGCTCAAAAT+AGG | - | tig0034145:5228-5247 | Msa1452770:intergenic | 50.0% | |
| CGTCGACAATGACACGAGGA+CGG | - | tig0034145:4335-4354 | Msa1465460:intergenic | 55.0% | |
| ! | CGTCCTCGTGTCATTGTCGA+CGG | + | tig0034145:4333-4352 | Msa1452770:CDS | 55.0% |
| ACACCGTCGACAATGACACG+AGG | - | tig0034145:4339-4358 | Msa1452770:intergenic | 55.0% | |
| TCAATGGCCGAAGGAGATGC+TGG | - | tig0034145:4858-4877 | Msa1452770:intergenic | 55.0% | |
| GGCCATTGAAGCCTTGCCAA+TGG | + | tig0034145:4869-4888 | Msa1452770:CDS | 55.0% | |
| TGTAGCTCGTGACGGCATAC+GGG | - | tig0034145:5047-5066 | Msa1452770:intergenic | 55.0% | |
| CTGTAGCTCGTGACGGCATA+CGG | - | tig0034145:5048-5067 | Msa1452770:intergenic | 55.0% | |
| GTATGCCGTCACGAGCTACA+GGG | + | tig0034145:5047-5066 | Msa1452770:CDS | 55.0% | |
| GCAGGGTTTCTTGGGGTTTG+AGG | + | tig0034145:5121-5140 | Msa1452770:CDS | 55.0% | |
| GAGCAGTCCTAGATTGGACG+CGG | + | tig0034145:5201-5220 | Msa1452770:CDS | 55.0% | |
| TTCTACTACGAGCACGAGCG+TGG | - | tig0034145:5241-5260 | Msa1452770:intergenic | 55.0% | |
| CGTCGACAATGACACGAGGA+CGG | - | tig0034145:4335-4354 | Msa1452770:intergenic | 55.0% | |
| ! | CGTCCTCGTGTCATTGTCGA+CGG | + | tig0034145:4333-4352 | Msa1452770:CDS | 55.0% |
| ACACCGTCGACAATGACACG+AGG | - | tig0034145:4339-4358 | Msa1452770:intergenic | 55.0% | |
| TCAATGGCCGAAGGAGATGC+TGG | - | tig0034145:4858-4877 | Msa1452770:intergenic | 55.0% | |
| GGCCATTGAAGCCTTGCCAA+TGG | + | tig0034145:4869-4888 | Msa1452770:CDS | 55.0% | |
| TGTAGCTCGTGACGGCATAC+GGG | - | tig0034145:5047-5066 | Msa1452770:intergenic | 55.0% | |
| CTGTAGCTCGTGACGGCATA+CGG | - | tig0034145:5048-5067 | Msa1452770:intergenic | 55.0% | |
| GTATGCCGTCACGAGCTACA+GGG | + | tig0034145:5047-5066 | Msa1452770:CDS | 55.0% | |
| GCAGGGTTTCTTGGGGTTTG+AGG | + | tig0034145:5121-5140 | Msa1452770:CDS | 55.0% | |
| GAGCAGTCCTAGATTGGACG+CGG | + | tig0034145:5201-5220 | Msa1452770:CDS | 55.0% | |
| TTCTACTACGAGCACGAGCG+TGG | - | tig0034145:5241-5260 | Msa1452770:intergenic | 55.0% | |
| GGTGGTGCAATAGGCCTTGG+TGG | - | tig0034145:4720-4739 | Msa1452770:intergenic | 60.0% | |
| ! | GGTGGTGGTGCAATAGGCCT+TGG | - | tig0034145:4723-4742 | Msa1452770:intergenic | 60.0% |
| !! | GGTGGTGGTGGTGGTGCAAT+AGG | - | tig0034145:4729-4748 | Msa1452770:intergenic | 60.0% |
| !! | TGTGATGGTGGTGGTGGTGG+TGG | - | tig0034145:4741-4760 | Msa1452770:intergenic | 60.0% |
| GCCACCTCCAGCATCTCCTT+CGG | + | tig0034145:4848-4867 | Msa1452770:CDS | 60.0% | |
| ATGGCCGAAGGAGATGCTGG+AGG | - | tig0034145:4855-4874 | Msa1452770:intergenic | 60.0% | |
| GGCAAGGCTTCAATGGCCGA+AGG | - | tig0034145:4867-4886 | Msa1452770:intergenic | 60.0% | |
| GTAGCTCGTGACGGCATACG+GGG | - | tig0034145:5046-5065 | Msa1452770:intergenic | 60.0% | |
| CGTATGCCGTCACGAGCTAC+AGG | + | tig0034145:5046-5065 | Msa1452770:CDS | 60.0% | |
| CAACGCCCTGTAGCTCGTGA+CGG | - | tig0034145:5055-5074 | Msa1452770:intergenic | 60.0% | |
| GGTGGTGCAATAGGCCTTGG+TGG | - | tig0034145:4720-4739 | Msa1452770:intergenic | 60.0% | |
| ! | GGTGGTGGTGCAATAGGCCT+TGG | - | tig0034145:4723-4742 | Msa1452770:intergenic | 60.0% |
| !! | GGTGGTGGTGGTGGTGCAAT+AGG | - | tig0034145:4729-4748 | Msa1452770:intergenic | 60.0% |
| !! | TGTGATGGTGGTGGTGGTGG+TGG | - | tig0034145:4741-4760 | Msa1452770:intergenic | 60.0% |
| GCCACCTCCAGCATCTCCTT+CGG | + | tig0034145:4848-4867 | Msa1452770:CDS | 60.0% | |
| ATGGCCGAAGGAGATGCTGG+AGG | - | tig0034145:4855-4874 | Msa1452770:intergenic | 60.0% | |
| GGCAAGGCTTCAATGGCCGA+AGG | - | tig0034145:4867-4886 | Msa1452770:intergenic | 60.0% | |
| GTAGCTCGTGACGGCATACG+GGG | - | tig0034145:5046-5065 | Msa1452770:intergenic | 60.0% | |
| CGTATGCCGTCACGAGCTAC+AGG | + | tig0034145:5046-5065 | Msa1452770:CDS | 60.0% | |
| CAACGCCCTGTAGCTCGTGA+CGG | - | tig0034145:5055-5074 | Msa1452770:intergenic | 60.0% | |
| !! | GATGGTGGTGGTGGTGGTGG+TGG | - | tig0034145:4738-4757 | Msa1452770:intergenic | 65.0% |
| GCCGAAGGAGATGCTGGAGG+TGG | - | tig0034145:4852-4871 | Msa1452770:intergenic | 65.0% | |
| !! | GATGGTGGTGGTGGTGGTGG+TGG | - | tig0034145:4738-4757 | Msa1452770:intergenic | 65.0% |
| GCCGAAGGAGATGCTGGAGG+TGG | - | tig0034145:4852-4871 | Msa1452770:intergenic | 65.0% | |
| GGAGATGCTGGAGGTGGCCC+AGG | - | tig0034145:4846-4865 | Msa1452770:intergenic | 70.0% | |
| GGAGATGCTGGAGGTGGCCC+AGG | - | tig0034145:4846-4865 | Msa1452770:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0034145 | gene | 4318 | 5277 | 4318 | ID=Msa1452770;Name=Msa1452770 |
| tig0034145 | mRNA | 4318 | 5277 | 4318 | ID=Msa1452770-mRNA-1;Parent=Msa1452770;Name=Msa1452770-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|-1|0|1|-1|1|1|0|319 |
| tig0034145 | exon | 4318 | 5277 | 4318 | ID=Msa1452770-mRNA-1:exon:18800;Parent=Msa1452770-mRNA-1 |
| tig0034145 | CDS | 4318 | 5277 | 4318 | ID=Msa1452770-mRNA-1:cds;Parent=Msa1452770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
