Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309470 | AES63309.1 | 94.006 | 317 | 15 | 1 | 1 | 317 | 1 | 313 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309470 | sp|O22197|RHC1A_ARATH | 32.636 | 239 | 135 | 5 | 24 | 249 | 9 | 234 | 8.02e-31 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189170 | Msa0309470 | 0.881101 | 3.173595e-70 | -8.615850e-47 |
| Msa0270750 | Msa0309470 | 0.951407 | 2.180448e-109 | -8.615850e-47 |
| Msa0309470 | Msa0427820 | 0.814584 | 1.430249e-51 | -8.615850e-47 |
| Msa0309470 | Msa0474060 | 0.805742 | 1.152366e-49 | -8.615850e-47 |
| Msa0309470 | Msa0518680 | 0.813274 | 2.781400e-51 | -8.615850e-47 |
| Msa0309470 | Msa1360930 | 0.801167 | 1.023068e-48 | -8.615850e-47 |
| Msa0309470 | Msa1452770 | 0.888532 | 5.431443e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309470 | MtrunA17_Chr2g0278071 | 94.304 | 316 | 14 | 1 | 1 | 316 | 58 | 369 | 0.0 | 580 |
| Msa0309470 | MtrunA17_Chr3g0114781 | 33.977 | 259 | 136 | 6 | 18 | 249 | 15 | 265 | 2.67e-41 | 148 |
| Msa0309470 | MtrunA17_Chr1g0171791 | 40.972 | 144 | 78 | 2 | 144 | 281 | 99 | 241 | 2.84e-32 | 122 |
| Msa0309470 | MtrunA17_Chr3g0093621 | 33.058 | 242 | 132 | 9 | 23 | 249 | 8 | 234 | 5.12e-30 | 116 |
| Msa0309470 | MtrunA17_Chr5g0441191 | 53.933 | 89 | 40 | 1 | 161 | 249 | 157 | 244 | 7.39e-29 | 114 |
| Msa0309470 | MtrunA17_Chr4g0031931 | 54.545 | 88 | 40 | 0 | 162 | 249 | 138 | 225 | 2.51e-28 | 114 |
| Msa0309470 | MtrunA17_Chr2g0328531 | 29.437 | 231 | 148 | 5 | 23 | 249 | 14 | 233 | 4.44e-27 | 110 |
| Msa0309470 | MtrunA17_Chr1g0211891 | 57.895 | 76 | 31 | 1 | 175 | 249 | 163 | 238 | 3.73e-25 | 104 |
| Msa0309470 | MtrunA17_Chr6g0481701 | 50.000 | 92 | 44 | 2 | 160 | 249 | 188 | 279 | 1.30e-24 | 103 |
| Msa0309470 | MtrunA17_Chr3g0112071 | 53.521 | 71 | 33 | 0 | 179 | 249 | 170 | 240 | 5.94e-24 | 102 |
| Msa0309470 | MtrunA17_Chr5g0435561 | 52.857 | 70 | 33 | 0 | 180 | 249 | 168 | 237 | 3.57e-23 | 99.8 |
| Msa0309470 | MtrunA17_Chr3g0121201 | 46.739 | 92 | 43 | 2 | 160 | 250 | 196 | 282 | 5.29e-21 | 93.2 |
| Msa0309470 | MtrunA17_Chr7g0245341 | 43.158 | 95 | 52 | 2 | 157 | 249 | 295 | 389 | 2.20e-19 | 89.7 |
| Msa0309470 | MtrunA17_Chr1g0212081 | 50.000 | 78 | 37 | 1 | 172 | 249 | 233 | 308 | 4.08e-18 | 84.7 |
| Msa0309470 | MtrunA17_Chr4g0061811 | 54.167 | 72 | 32 | 1 | 179 | 249 | 333 | 404 | 9.32e-18 | 84.3 |
| Msa0309470 | MtrunA17_Chr5g0417501 | 38.202 | 89 | 51 | 2 | 161 | 249 | 75 | 159 | 1.10e-17 | 81.3 |
| Msa0309470 | MtrunA17_Chr1g0150571 | 42.169 | 83 | 44 | 2 | 176 | 255 | 201 | 282 | 2.04e-17 | 82.0 |
| Msa0309470 | MtrunA17_Chr6g0456041 | 50.000 | 74 | 36 | 1 | 177 | 249 | 245 | 318 | 1.75e-16 | 79.7 |
| Msa0309470 | MtrunA17_Chr6g0461611 | 34.862 | 109 | 52 | 4 | 155 | 249 | 177 | 280 | 3.24e-13 | 70.1 |
| Msa0309470 | MtrunA17_Chr3g0124731 | 44.286 | 70 | 37 | 1 | 180 | 249 | 166 | 233 | 4.62e-13 | 68.2 |
| Msa0309470 | MtrunA17_Chr1g0181921 | 46.377 | 69 | 33 | 1 | 181 | 249 | 189 | 253 | 8.38e-13 | 68.2 |
| Msa0309470 | MtrunA17_Chr4g0027761 | 38.710 | 93 | 47 | 4 | 184 | 269 | 104 | 193 | 1.17e-12 | 66.2 |
| Msa0309470 | MtrunA17_Chr5g0424081 | 48.333 | 60 | 30 | 1 | 191 | 249 | 209 | 268 | 5.08e-12 | 66.6 |
| Msa0309470 | MtrunA17_Chr2g0308971 | 52.381 | 42 | 20 | 0 | 205 | 246 | 109 | 150 | 7.56e-12 | 64.7 |
| Msa0309470 | MtrunA17_Chr6g0486651 | 44.286 | 70 | 35 | 4 | 183 | 249 | 96 | 164 | 3.43e-11 | 64.3 |
| Msa0309470 | MtrunA17_Chr3g0089261 | 42.857 | 70 | 32 | 2 | 180 | 249 | 279 | 340 | 8.51e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309470 | AT1G68180.1 | 32.258 | 310 | 127 | 10 | 1 | 307 | 1 | 230 | 6.73e-41 | 144 |
| Msa0309470 | AT1G60360.1 | 33.205 | 259 | 147 | 7 | 17 | 253 | 18 | 272 | 3.90e-33 | 126 |
| Msa0309470 | AT2G40830.1 | 32.636 | 239 | 135 | 5 | 24 | 249 | 9 | 234 | 8.15e-32 | 123 |
| Msa0309470 | AT2G40830.3 | 32.636 | 239 | 135 | 5 | 24 | 249 | 9 | 234 | 8.15e-32 | 123 |
| Msa0309470 | AT2G40830.4 | 32.636 | 239 | 135 | 5 | 24 | 249 | 9 | 234 | 8.15e-32 | 123 |
| Msa0309470 | AT2G40830.2 | 32.636 | 239 | 135 | 5 | 24 | 249 | 9 | 234 | 8.15e-32 | 123 |
| Msa0309470 | AT3G56580.3 | 32.051 | 234 | 139 | 5 | 24 | 249 | 9 | 230 | 1.96e-31 | 122 |
| Msa0309470 | AT3G56580.1 | 32.051 | 234 | 139 | 5 | 24 | 249 | 9 | 230 | 1.96e-31 | 122 |
| Msa0309470 | AT3G56580.2 | 32.051 | 234 | 139 | 5 | 24 | 249 | 9 | 230 | 1.96e-31 | 122 |
| Msa0309470 | AT3G10815.1 | 52.174 | 92 | 44 | 0 | 158 | 249 | 74 | 165 | 1.40e-28 | 110 |
| Msa0309470 | AT3G19950.2 | 31.746 | 252 | 135 | 9 | 23 | 249 | 79 | 318 | 8.55e-27 | 110 |
| Msa0309470 | AT3G19950.3 | 31.746 | 252 | 135 | 9 | 23 | 249 | 79 | 318 | 8.55e-27 | 110 |
| Msa0309470 | AT3G19950.1 | 31.746 | 252 | 135 | 9 | 23 | 249 | 21 | 260 | 1.40e-26 | 108 |
| Msa0309470 | AT5G59550.1 | 50.538 | 93 | 42 | 1 | 175 | 267 | 169 | 257 | 2.07e-26 | 109 |
| Msa0309470 | AT5G59550.2 | 50.538 | 93 | 42 | 1 | 175 | 267 | 274 | 362 | 3.72e-26 | 110 |
| Msa0309470 | AT3G46620.1 | 46.602 | 103 | 44 | 2 | 148 | 249 | 167 | 259 | 2.89e-25 | 106 |
| Msa0309470 | AT3G13430.4 | 51.948 | 77 | 33 | 1 | 173 | 249 | 197 | 269 | 4.37e-23 | 99.0 |
| Msa0309470 | AT3G13430.3 | 51.948 | 77 | 33 | 1 | 173 | 249 | 197 | 269 | 4.37e-23 | 99.0 |
| Msa0309470 | AT3G13430.1 | 51.948 | 77 | 33 | 1 | 173 | 249 | 197 | 269 | 4.37e-23 | 99.0 |
| Msa0309470 | AT3G13430.2 | 51.948 | 77 | 33 | 1 | 173 | 249 | 197 | 269 | 4.37e-23 | 99.0 |
| Msa0309470 | AT2G39720.1 | 55.844 | 77 | 32 | 1 | 179 | 253 | 173 | 249 | 2.04e-22 | 98.2 |
| Msa0309470 | AT2G39720.2 | 55.844 | 77 | 32 | 1 | 179 | 253 | 173 | 249 | 2.04e-22 | 98.2 |
| Msa0309470 | AT5G15820.1 | 55.405 | 74 | 32 | 1 | 177 | 249 | 262 | 335 | 3.38e-21 | 94.0 |
| Msa0309470 | AT3G02340.1 | 50.562 | 89 | 40 | 3 | 162 | 249 | 294 | 379 | 2.38e-20 | 92.4 |
| Msa0309470 | AT3G02340.2 | 50.562 | 89 | 40 | 3 | 162 | 249 | 294 | 379 | 2.38e-20 | 92.4 |
| Msa0309470 | AT1G55530.3 | 27.459 | 244 | 142 | 8 | 23 | 249 | 9 | 234 | 4.25e-20 | 90.5 |
| Msa0309470 | AT5G56340.1 | 46.154 | 91 | 43 | 2 | 160 | 249 | 218 | 303 | 6.72e-20 | 90.9 |
| Msa0309470 | AT1G55530.1 | 48.000 | 75 | 34 | 1 | 175 | 249 | 198 | 267 | 8.60e-20 | 90.1 |
| Msa0309470 | AT1G55530.2 | 48.000 | 75 | 34 | 1 | 175 | 249 | 198 | 267 | 8.60e-20 | 90.1 |
| Msa0309470 | AT5G01980.1 | 39.623 | 106 | 60 | 2 | 145 | 249 | 292 | 394 | 5.41e-19 | 89.0 |
| Msa0309470 | AT4G26400.2 | 43.333 | 90 | 45 | 2 | 161 | 249 | 201 | 285 | 1.01e-18 | 87.0 |
| Msa0309470 | AT4G26400.1 | 43.333 | 90 | 45 | 2 | 161 | 249 | 201 | 285 | 1.01e-18 | 87.0 |
| Msa0309470 | AT5G20910.1 | 40.217 | 92 | 52 | 1 | 161 | 249 | 183 | 274 | 1.84e-17 | 82.8 |
| Msa0309470 | AT5G60820.1 | 42.268 | 97 | 50 | 2 | 157 | 249 | 322 | 416 | 9.58e-17 | 81.6 |
| Msa0309470 | AT1G26800.1 | 42.466 | 73 | 38 | 1 | 177 | 249 | 89 | 157 | 1.03e-16 | 78.6 |
| Msa0309470 | AT5G08139.1 | 48.000 | 75 | 36 | 2 | 177 | 249 | 280 | 353 | 5.30e-16 | 79.3 |
| Msa0309470 | AT1G14200.1 | 37.624 | 101 | 58 | 2 | 150 | 249 | 57 | 153 | 7.26e-16 | 75.5 |
| Msa0309470 | AT5G64920.1 | 45.333 | 75 | 41 | 0 | 179 | 253 | 231 | 305 | 3.52e-15 | 76.3 |
| Msa0309470 | AT3G60080.1 | 44.444 | 72 | 32 | 2 | 186 | 249 | 142 | 213 | 1.11e-14 | 74.7 |
| Msa0309470 | AT2G44330.1 | 45.714 | 70 | 32 | 1 | 186 | 249 | 71 | 140 | 1.88e-13 | 68.6 |
| Msa0309470 | AT3G30460.1 | 36.957 | 92 | 53 | 2 | 161 | 250 | 54 | 142 | 9.36e-13 | 65.9 |
| Msa0309470 | AT3G30460.2 | 36.957 | 92 | 53 | 2 | 161 | 250 | 90 | 178 | 1.52e-12 | 66.2 |
| Msa0309470 | AT5G02750.1 | 52.000 | 50 | 24 | 0 | 200 | 249 | 209 | 258 | 2.61e-11 | 64.3 |
| Msa0309470 | AT2G03000.1 | 41.892 | 74 | 36 | 3 | 180 | 252 | 461 | 528 | 3.70e-11 | 65.1 |
| Msa0309470 | AT2G01735.1 | 37.037 | 81 | 49 | 2 | 177 | 256 | 280 | 359 | 8.02e-11 | 63.5 |
Find 108 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGCTGATCATTCTCATTT+TGG | 0.076885 | 2_4:+3987533 | None:intergenic |
| TGAGAACCTTCCACTATTTC+TGG | 0.165081 | 2_4:-3988269 | Msa0309470:CDS |
| TCTTTGCATATAGGACAATT+TGG | 0.213259 | 2_4:+3987712 | None:intergenic |
| AATTTACAAGCAGCATTAAT+TGG | 0.221425 | 2_4:-3987492 | Msa0309470:CDS |
| GGGTCCATGTTTCTGTTGTT+AGG | 0.244692 | 2_4:+3988111 | None:intergenic |
| CAAGCAGCATTAATTGGATT+TGG | 0.248709 | 2_4:-3987486 | Msa0309470:CDS |
| AAACAACACAACACCACAAT+GGG | 0.266552 | 2_4:-3988016 | Msa0309470:CDS |
| TCCTTCTACTAACCAGTTAA+TGG | 0.270630 | 2_4:-3988085 | Msa0309470:CDS |
| ACAAATACCATTCAAAATTA+TGG | 0.274205 | 2_4:-3988210 | Msa0309470:CDS |
| GAATGATCAGCAGGGTTTCT+TGG | 0.309653 | 2_4:-3987524 | Msa0309470:CDS |
| AATGATCAGCAGGGTTTCTT+GGG | 0.310221 | 2_4:-3987523 | Msa0309470:CDS |
| CGCAGTTGATGGAAGCAATA+TGG | 0.332701 | 2_4:+3988177 | None:intergenic |
| TGAAGCCTTGCCAATGGTTA+AGG | 0.364501 | 2_4:-3987761 | Msa0309470:CDS |
| ACGAGCGTGGAGCTCAAAAT+AGG | 0.367783 | 2_4:+3987411 | None:intergenic |
| GCCTGTCAGAGACATATTAT+TGG | 0.372861 | 2_4:+3988326 | None:intergenic |
| TCATTAGATGAGTTCTTTGA+TGG | 0.373604 | 2_4:-3987838 | Msa0309470:CDS |
| CAAGTTCATAACGCAGTTGA+TGG | 0.375121 | 2_4:+3988166 | None:intergenic |
| CTGTAGCTCGTGACGGCATA+CGG | 0.378221 | 2_4:+3987591 | None:intergenic |
| ATTGTGGTGTTGTGTTGTTT+TGG | 0.388494 | 2_4:+3988019 | None:intergenic |
| GGTCCATGTTTCTGTTGTTA+GGG | 0.400373 | 2_4:+3988112 | None:intergenic |
| CAGCCTCCATCATCAATTCA+TGG | 0.401083 | 2_4:-3986530 | Msa0309470:CDS |
| AATAGGACCGCGTCCAATCT+AGG | 0.407821 | 2_4:+3987428 | None:intergenic |
| CGTATGCCGTCACGAGCTAC+AGG | 0.415344 | 2_4:-3987590 | Msa0309470:CDS |
| CCAAAATGAGAATGATCAGC+AGG | 0.417579 | 2_4:-3987533 | Msa0309470:CDS |
| AAGCTAAGCTACCCATTAAC+TGG | 0.418537 | 2_4:+3988073 | None:intergenic |
| GCAGGGTTTCTTGGGGTTTG+AGG | 0.423615 | 2_4:-3987515 | Msa0309470:CDS |
| CCCATTAACTGGTTAGTAGA+AGG | 0.433887 | 2_4:+3988084 | None:intergenic |
| TGGTCTTGTCTTCTAAGAGA+TGG | 0.437407 | 2_4:+3988039 | None:intergenic |
| CAATCTAGGACTGCTCGAAT+AGG | 0.437852 | 2_4:+3987442 | None:intergenic |
| GGTGGTGGTGCAATAGGCCT+TGG | 0.439267 | 2_4:+3987916 | None:intergenic |
| ATTCTGACTGCATTCTCCCT+TGG | 0.441720 | 2_4:-3987636 | Msa0309470:CDS |
| TCAAACTCATCTTTGCATAT+AGG | 0.442911 | 2_4:+3987703 | None:intergenic |
| AACCATTGGCAAGGCTTCAA+TGG | 0.443378 | 2_4:+3987765 | None:intergenic |
| GTGGAGGATGAAAGTGTTGA+TGG | 0.447166 | 2_4:-3985618 | Msa0309470:CDS |
| CCTTCTACTAACCAGTTAAT+GGG | 0.452199 | 2_4:-3988084 | Msa0309470:CDS |
| GGAGCCAACTTGCTTCGATT+AGG | 0.457339 | 2_4:-3987465 | Msa0309470:CDS |
| GCCACCTCCAGCATCTCCTT+CGG | 0.478323 | 2_4:-3987788 | Msa0309470:CDS |
| TCAAAGAACTCATCTAATGA+AGG | 0.479520 | 2_4:+3987841 | None:intergenic |
| GGAGATGCTGGAGGTGGCCC+CGG | 0.482622 | 2_4:+3987793 | None:intergenic |
| CATTAGATGAGTTCTTTGAT+GGG | 0.483678 | 2_4:-3987837 | Msa0309470:CDS |
| TATATGCAAAGATGAGTTTG+AGG | 0.486390 | 2_4:-3987701 | Msa0309470:CDS |
| ACCACCACCATCACAAAACT+TGG | 0.486668 | 2_4:-3987890 | Msa0309470:CDS |
| GGTGGTGCAATAGGCCTTGG+TGG | 0.488698 | 2_4:+3987919 | None:intergenic |
| CTATTCGAGCAGTCCTAGAT+TGG | 0.488931 | 2_4:-3987441 | Msa0309470:CDS |
| AAAACAACACAACACCACAA+TGG | 0.496778 | 2_4:-3988017 | Msa0309470:CDS |
| TCAATGGCCGAAGGAGATGC+TGG | 0.500012 | 2_4:+3987781 | None:intergenic |
| TGTAGCTCGTGACGGCATAC+GGG | 0.506136 | 2_4:+3987592 | None:intergenic |
| AATTGAGACACCAGAAATAG+TGG | 0.510710 | 2_4:+3988259 | None:intergenic |
| GCCGAAGGAGATGCTGGAGG+TGG | 0.514613 | 2_4:+3987787 | None:intergenic |
| GGGTCATTCATAAGAAGTCT+TGG | 0.524227 | 2_4:+3988132 | None:intergenic |
| TCCAATAATATGTCTCTGAC+AGG | 0.524599 | 2_4:-3988327 | Msa0309470:exon |
| GCTTCTGTTACCTTAACCAT+TGG | 0.525756 | 2_4:+3987751 | None:intergenic |
| CAAAGAACTCATCTAATGAA+GGG | 0.526024 | 2_4:+3987842 | None:intergenic |
| CGCTTCTCTCGAACGCAAGA+CGG | 0.528352 | 2_4:-3985582 | Msa0309470:CDS |
| GTTATGAACTTGATATATCA+AGG | 0.531624 | 2_4:-3988155 | Msa0309470:CDS |
| GGCTCTTCAGTCCTGTTCGA+AGG | 0.533371 | 2_4:-3986467 | Msa0309470:intron |
| GTCTTCTAAGAGATGGATCA+AGG | 0.535188 | 2_4:+3988046 | None:intergenic |
| AAGGGAGAATGCAGTCAGAA+TGG | 0.535813 | 2_4:+3987638 | None:intergenic |
| TCATGTTCTGTTCCCCATTG+TGG | 0.540794 | 2_4:+3988003 | None:intergenic |
| AACTGGTTAGTAGAAGGAGG+AGG | 0.540994 | 2_4:+3988090 | None:intergenic |
| GTGTTATGCATTTGAAGCCA+AGG | 0.541607 | 2_4:+3987619 | None:intergenic |
| TTCTACTACGAGCACGAGCG+TGG | 0.546469 | 2_4:+3987398 | None:intergenic |
| AAAATCAAAATCCACAAGCA+TGG | 0.547418 | 2_4:-3987972 | Msa0309470:CDS |
| GATTCACAACAATATTAGAC+CGG | 0.549393 | 2_4:-3987812 | Msa0309470:CDS |
| ATAGGCCTTGGTGGATGAGT+TGG | 0.551028 | 2_4:+3987928 | None:intergenic |
| GGCCATTGAAGCCTTGCCAA+TGG | 0.553512 | 2_4:-3987767 | Msa0309470:CDS |
| AAGCGGCCATGAATTGATGA+TGG | 0.558165 | 2_4:+3986524 | None:intergenic |
| CGTCCTCGTGTCATTGTCGA+CGG | 0.567011 | 2_4:-3988303 | Msa0309470:CDS |
| AGGACTGAAGAGCCTCAAGT+TGG | 0.567508 | 2_4:+3986476 | None:intergenic |
| CTTAGTGTAATCCATGCTTG+TGG | 0.570113 | 2_4:+3987961 | None:intergenic |
| GGAGATGGTGGCTGATGTAG+TGG | 0.573183 | 2_4:+3986497 | None:intergenic |
| CAAAATGAGAATGATCAGCA+GGG | 0.573456 | 2_4:-3987532 | Msa0309470:CDS |
| AGATGAGTTTGAGGTTGATG+TGG | 0.576181 | 2_4:-3987692 | Msa0309470:CDS |
| TGTTACCTTAACCATTGGCA+AGG | 0.594184 | 2_4:+3987756 | None:intergenic |
| TGTTATGCATTTGAAGCCAA+GGG | 0.598250 | 2_4:+3987620 | None:intergenic |
| GAAGAGCCTCAAGTTGGAGA+TGG | 0.598306 | 2_4:+3986482 | None:intergenic |
| ATTAGATGAGTTCTTTGATG+GGG | 0.601899 | 2_4:-3987836 | Msa0309470:CDS |
| TTGCGTTCGAGAGAAGCGGC+TGG | 0.608393 | 2_4:+3985587 | None:intergenic |
| GAGCCTCAAGTTGGAGATGG+TGG | 0.610361 | 2_4:+3986485 | None:intergenic |
| TAGGCCTAATCGAAGCAAGT+TGG | 0.610681 | 2_4:+3987461 | None:intergenic |
| CGTCTTGCGTTCGAGAGAAG+CGG | 0.610916 | 2_4:+3985583 | None:intergenic |
| ATTCACAACAATATTAGACC+GGG | 0.615071 | 2_4:-3987811 | Msa0309470:CDS |
| GAATGGTAGAAATGTTTGCA+TGG | 0.616001 | 2_4:+3987655 | None:intergenic |
| ATGATCAGCAGGGTTTCTTG+GGG | 0.617582 | 2_4:-3987522 | Msa0309470:CDS |
| ATGGTATTCTGACAGTACGT+TGG | 0.622474 | 2_4:+3988235 | None:intergenic |
| CAAAGAAGTATTCAATGTGG+AGG | 0.622475 | 2_4:-3985634 | Msa0309470:CDS |
| AAAGAACTCATCTAATGAAG+GGG | 0.623408 | 2_4:+3987843 | None:intergenic |
| AACAACACAACACCACAATG+GGG | 0.628137 | 2_4:-3988015 | Msa0309470:CDS |
| GGCAAGGCTTCAATGGCCGA+AGG | 0.631031 | 2_4:+3987772 | None:intergenic |
| CAGCCACCATCTCCAACTTG+AGG | 0.634453 | 2_4:-3986488 | Msa0309470:CDS |
| CAACGCCCTGTAGCTCGTGA+CGG | 0.639056 | 2_4:+3987584 | None:intergenic |
| TGACCCTAACAACAGAAACA+TGG | 0.639124 | 2_4:-3988115 | Msa0309470:CDS |
| ACTGGTTAGTAGAAGGAGGA+GGG | 0.643379 | 2_4:+3988091 | None:intergenic |
| GTTTCAATGTCATTGAGCTG+AGG | 0.643651 | 2_4:+3987865 | None:intergenic |
| GTAGCTCGTGACGGCATACG+GGG | 0.647054 | 2_4:+3987593 | None:intergenic |
| GAGACACCAGAAATAGTGGA+AGG | 0.648767 | 2_4:+3988263 | None:intergenic |
| GTATGCCGTCACGAGCTACA+GGG | 0.649158 | 2_4:-3987589 | Msa0309470:CDS |
| ATTAACTGGTTAGTAGAAGG+AGG | 0.655639 | 2_4:+3988087 | None:intergenic |
| CGTCGACAATGACACGAGGA+CGG | 0.658835 | 2_4:+3988304 | None:intergenic |
| GCTGATGTAGTGGAGGTAAG+CGG | 0.662543 | 2_4:+3986507 | None:intergenic |
| GATGGTGGCTGATGTAGTGG+AGG | 0.666037 | 2_4:+3986500 | None:intergenic |
| CGGCCATGAATTGATGATGG+AGG | 0.674807 | 2_4:+3986527 | None:intergenic |
| GAGCAGTCCTAGATTGGACG+CGG | 0.690002 | 2_4:-3987435 | Msa0309470:CDS |
| CAGCAAAGAAGTATTCAATG+TGG | 0.709957 | 2_4:-3985637 | Msa0309470:CDS |
| ATGGCCGAAGGAGATGCTGG+AGG | 0.719854 | 2_4:+3987784 | None:intergenic |
| TTCACAACAATATTAGACCG+GGG | 0.752187 | 2_4:-3987810 | Msa0309470:CDS |
| TAAGACCAACTCATCCACCA+AGG | 0.753067 | 2_4:-3987933 | Msa0309470:CDS |
| ACACCGTCGACAATGACACG+AGG | 0.757808 | 2_4:+3988300 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCATCTTTTGTATTTA+AGG | + | chr2_4:3987212-3987231 | None:intergenic | 15.0% |
| !! | ACAAATACCATTCAAAATTA+TGG | - | chr2_4:3985675-3985694 | Msa0309470:intron | 20.0% |
| !! | ATTAAACATATATCACCATA+AGG | + | chr2_4:3986592-3986611 | None:intergenic | 20.0% |
| !! | CTTGTATCAACTAAATTTAA+TGG | + | chr2_4:3986949-3986968 | None:intergenic | 20.0% |
| !!! | TTAAATTTAGTTGATACAAG+AGG | - | chr2_4:3986949-3986968 | Msa0309470:intron | 20.0% |
| !! | AAACACAACAAAAATTTAGA+GGG | + | chr2_4:3987082-3987101 | None:intergenic | 20.0% |
| !!! | ATTTAAGGTAATAAGAGTTA+TGG | + | chr2_4:3987197-3987216 | None:intergenic | 20.0% |
| !! | AAGTTGTAAGGTTTAATAAA+AGG | - | chr2_4:3987885-3987904 | Msa0309470:CDS | 20.0% |
| !! | AAGATATTATATGGACAATT+GGG | + | chr2_4:3987936-3987955 | None:intergenic | 20.0% |
| !! | ATCACTTTCAAGATATTATA+TGG | + | chr2_4:3987945-3987964 | None:intergenic | 20.0% |
| !!! | TTATTAAGAAAGCTATTTTC+CGG | + | chr2_4:3987972-3987991 | None:intergenic | 20.0% |
| !!! | TTTTGAATGGTATTTGTTGA+TGG | + | chr2_4:3985672-3985691 | None:intergenic | 25.0% |
| ! | GTTATGAACTTGATATATCA+AGG | - | chr2_4:3985730-3985749 | Msa0309470:intron | 25.0% |
| ! | AATTTACAAGCAGCATTAAT+TGG | - | chr2_4:3986393-3986412 | Msa0309470:intron | 25.0% |
| ! | TGAAAAAATGCAACTATTTG+AGG | + | chr2_4:3986569-3986588 | None:intergenic | 25.0% |
| ! | ATATGAATTACCATAAGCAA+TGG | + | chr2_4:3986796-3986815 | None:intergenic | 25.0% |
| ! | AACTTAAAATTTCATCAGTC+TGG | - | chr2_4:3986891-3986910 | Msa0309470:intron | 25.0% |
| ! | GAAACACAACAAAAATTTAG+AGG | + | chr2_4:3987083-3987102 | None:intergenic | 25.0% |
| !! | TTTCTATTTTCTACTCAATC+TGG | - | chr2_4:3987099-3987118 | Msa0309470:intron | 25.0% |
| !!! | TTCTTCTGTCAGTTTTTTTA+TGG | - | chr2_4:3987123-3987142 | Msa0309470:intron | 25.0% |
| ! | TTGGAATACTATAGTAGATT+TGG | - | chr2_4:3987324-3987343 | Msa0309470:intron | 25.0% |
| ! | TTAATTAACTGATCATTCCT+TGG | - | chr2_4:3987464-3987483 | Msa0309470:CDS | 25.0% |
| !! | CTTAATGAAGTTTTTGACAT+AGG | + | chr2_4:3987501-3987520 | None:intergenic | 25.0% |
| !! | AAATGAACTATGACTTTTGA+CGG | + | chr2_4:3987567-3987586 | None:intergenic | 25.0% |
| !! | CATGTCAACTTTTAATGTAT+AGG | + | chr2_4:3987694-3987713 | None:intergenic | 25.0% |
| !!! | TTTTAGAAACTATGTCAATC+TGG | + | chr2_4:3987784-3987803 | None:intergenic | 25.0% |
| ! | CAAGATATTATATGGACAAT+TGG | + | chr2_4:3987937-3987956 | None:intergenic | 25.0% |
| ! | TCAAAGTCATCAAAATAATG+AGG | - | chr2_4:3988004-3988023 | Msa0309470:CDS | 25.0% |
| ! | TTACAAGTAAGGTTACTTAT+TGG | - | chr2_4:3988205-3988224 | Msa0309470:CDS | 25.0% |
| ! | GAAAGAGCCATAATTTTGAA+TGG | + | chr2_4:3985685-3985704 | None:intergenic | 30.0% |
| AAAATCAAAATCCACAAGCA+TGG | - | chr2_4:3985913-3985932 | Msa0309470:intron | 30.0% | |
| AAAGAACTCATCTAATGAAG+GGG | + | chr2_4:3986045-3986064 | None:intergenic | 30.0% | |
| CAAAGAACTCATCTAATGAA+GGG | + | chr2_4:3986046-3986065 | None:intergenic | 30.0% | |
| TCAAAGAACTCATCTAATGA+AGG | + | chr2_4:3986047-3986066 | None:intergenic | 30.0% | |
| TCATTAGATGAGTTCTTTGA+TGG | - | chr2_4:3986047-3986066 | Msa0309470:intron | 30.0% | |
| CATTAGATGAGTTCTTTGAT+GGG | - | chr2_4:3986048-3986067 | Msa0309470:intron | 30.0% | |
| ATTAGATGAGTTCTTTGATG+GGG | - | chr2_4:3986049-3986068 | Msa0309470:intron | 30.0% | |
| GATTCACAACAATATTAGAC+CGG | - | chr2_4:3986073-3986092 | Msa0309470:intron | 30.0% | |
| ATTCACAACAATATTAGACC+GGG | - | chr2_4:3986074-3986093 | Msa0309470:intron | 30.0% | |
| TCTTTGCATATAGGACAATT+TGG | + | chr2_4:3986176-3986195 | None:intergenic | 30.0% | |
| TCAAACTCATCTTTGCATAT+AGG | + | chr2_4:3986185-3986204 | None:intergenic | 30.0% | |
| TATATGCAAAGATGAGTTTG+AGG | - | chr2_4:3986184-3986203 | Msa0309470:intron | 30.0% | |
| !! | TCTCATTTTGGAAAAAGTAG+TGG | + | chr2_4:3986343-3986362 | None:intergenic | 30.0% |
| AGAAGTAAGATCAAACTCTA+AGG | - | chr2_4:3986506-3986525 | Msa0309470:CDS | 30.0% | |
| !!! | AGTTGCATTTTTTCACCTTA+TGG | - | chr2_4:3986574-3986593 | Msa0309470:intron | 30.0% |
| TTCCTAATGATTGGAGTTAT+TGG | + | chr2_4:3986626-3986645 | None:intergenic | 30.0% | |
| AATAACTCCAATCATTAGGA+AGG | - | chr2_4:3986625-3986644 | Msa0309470:intron | 30.0% | |
| TGAAACTATTCCATTGCTTA+TGG | - | chr2_4:3986783-3986802 | Msa0309470:intron | 30.0% | |
| AAAAAGTTTGTCTGTGGAAT+TGG | - | chr2_4:3987305-3987324 | Msa0309470:intron | 30.0% | |
| ACTAAAAAATACCTTCGAAC+AGG | + | chr2_4:3987432-3987451 | None:intergenic | 30.0% | |
| CATGAAATTGTTGGATTTAG+TGG | + | chr2_4:3987621-3987640 | None:intergenic | 30.0% | |
| CACTAAATCCAACAATTTCA+TGG | - | chr2_4:3987619-3987638 | Msa0309470:CDS | 30.0% | |
| AATATTATCCTCATGTCCAA+GGG | + | chr2_4:3987726-3987745 | None:intergenic | 30.0% | |
| AAATATTATCCTCATGTCCA+AGG | + | chr2_4:3987727-3987746 | None:intergenic | 30.0% | |
| AGGTTTAATAAAAGGCAACT+TGG | - | chr2_4:3987893-3987912 | Msa0309470:CDS | 30.0% | |
| TATCTTGAAAGTGATTTCAC+CGG | - | chr2_4:3987950-3987969 | Msa0309470:CDS | 30.0% | |
| ! | TTTGATGACTTTGAAAACAG+CGG | + | chr2_4:3987998-3988017 | None:intergenic | 30.0% |
| AGTGTATATTAGATAGTCGA+AGG | - | chr2_4:3988044-3988063 | Msa0309470:CDS | 30.0% | |
| ! | AGGGTTTTACTTTACAAGTA+AGG | - | chr2_4:3988194-3988213 | Msa0309470:CDS | 30.0% |
| AGGTTACTTATTGGCAATTT+AGG | - | chr2_4:3988214-3988233 | Msa0309470:CDS | 30.0% | |
| GGTTACTTATTGGCAATTTA+GGG | - | chr2_4:3988215-3988234 | Msa0309470:CDS | 30.0% | |
| TCCAATAATATGTCTCTGAC+AGG | - | chr2_4:3985558-3985577 | Msa0309470:CDS | 35.0% | |
| AATTGAGACACCAGAAATAG+TGG | + | chr2_4:3985629-3985648 | None:intergenic | 35.0% | |
| ATTAACTGGTTAGTAGAAGG+AGG | + | chr2_4:3985801-3985820 | None:intergenic | 35.0% | |
| TCCTTCTACTAACCAGTTAA+TGG | - | chr2_4:3985800-3985819 | Msa0309470:intron | 35.0% | |
| CCTTCTACTAACCAGTTAAT+GGG | - | chr2_4:3985801-3985820 | Msa0309470:intron | 35.0% | |
| !!! | ATTGTGGTGTTGTGTTGTTT+TGG | + | chr2_4:3985869-3985888 | None:intergenic | 35.0% |
| AAAACAACACAACACCACAA+TGG | - | chr2_4:3985868-3985887 | Msa0309470:intron | 35.0% | |
| AAACAACACAACACCACAAT+GGG | - | chr2_4:3985869-3985888 | Msa0309470:intron | 35.0% | |
| TTCACAACAATATTAGACCG+GGG | - | chr2_4:3986075-3986094 | Msa0309470:intron | 35.0% | |
| GAATGGTAGAAATGTTTGCA+TGG | + | chr2_4:3986233-3986252 | None:intergenic | 35.0% | |
| ! | TGTTATGCATTTGAAGCCAA+GGG | + | chr2_4:3986268-3986287 | None:intergenic | 35.0% |
| CAAAATGAGAATGATCAGCA+GGG | - | chr2_4:3986353-3986372 | Msa0309470:intron | 35.0% | |
| CAAGCAGCATTAATTGGATT+TGG | - | chr2_4:3986399-3986418 | Msa0309470:intron | 35.0% | |
| AGCCAATAACTCCAATCATT+AGG | - | chr2_4:3986621-3986640 | Msa0309470:intron | 35.0% | |
| TAGTTTCAACATGAGAAACC+AGG | + | chr2_4:3986771-3986790 | None:intergenic | 35.0% | |
| TCATATGCTTCACACTATTG+AGG | - | chr2_4:3986810-3986829 | Msa0309470:intron | 35.0% | |
| CATATGCTTCACACTATTGA+GGG | - | chr2_4:3986811-3986830 | Msa0309470:intron | 35.0% | |
| TGAGCATCACACAATTAGAT+AGG | + | chr2_4:3986856-3986875 | None:intergenic | 35.0% | |
| ! | CCATAATTTGCACCTTACAA+TGG | + | chr2_4:3986924-3986943 | None:intergenic | 35.0% |
| CCATTGTAAGGTGCAAATTA+TGG | - | chr2_4:3986921-3986940 | Msa0309470:intron | 35.0% | |
| ! | GATACAAGAGGTGTACATAT+AGG | - | chr2_4:3986961-3986980 | Msa0309470:intron | 35.0% |
| TGTGTAACAATAGTAGTGTC+AGG | - | chr2_4:3987271-3987290 | Msa0309470:intron | 35.0% | |
| ATAGTAGTGTCAGGAATTGT+TGG | - | chr2_4:3987280-3987299 | Msa0309470:intron | 35.0% | |
| TTGGTGAAAAAGTTTGTCTG+TGG | - | chr2_4:3987299-3987318 | Msa0309470:intron | 35.0% | |
| !! | CATAGGTTATTTGTTGTCCA+AGG | + | chr2_4:3987484-3987503 | None:intergenic | 35.0% |
| AGCTTCTACCATGAAATTGT+TGG | + | chr2_4:3987630-3987649 | None:intergenic | 35.0% | |
| ACATAATGTGATTGCGTTGT+TGG | - | chr2_4:3987834-3987853 | Msa0309470:CDS | 35.0% | |
| CTTATTGGCAATTTAGGGAT+TGG | - | chr2_4:3988220-3988239 | Msa0309470:CDS | 35.0% | |
| !! | CAGCAAAGAAGTATTCAATG+TGG | - | chr2_4:3988248-3988267 | Msa0309470:CDS | 35.0% |
| !! | CAAAGAAGTATTCAATGTGG+AGG | - | chr2_4:3988251-3988270 | Msa0309470:CDS | 35.0% |
| GCCTGTCAGAGACATATTAT+TGG | + | chr2_4:3985562-3985581 | None:intergenic | 40.0% | |
| TGAGAACCTTCCACTATTTC+TGG | - | chr2_4:3985616-3985635 | Msa0309470:CDS | 40.0% | |
| ATGGTATTCTGACAGTACGT+TGG | + | chr2_4:3985653-3985672 | None:intergenic | 40.0% | |
| CAAGTTCATAACGCAGTTGA+TGG | + | chr2_4:3985722-3985741 | None:intergenic | 40.0% | |
| GGGTCATTCATAAGAAGTCT+TGG | + | chr2_4:3985756-3985775 | None:intergenic | 40.0% | |
| TGACCCTAACAACAGAAACA+TGG | - | chr2_4:3985770-3985789 | Msa0309470:intron | 40.0% | |
| ! | GGTCCATGTTTCTGTTGTTA+GGG | + | chr2_4:3985776-3985795 | None:intergenic | 40.0% |
| CCCATTAACTGGTTAGTAGA+AGG | + | chr2_4:3985804-3985823 | None:intergenic | 40.0% | |
| AAGCTAAGCTACCCATTAAC+TGG | + | chr2_4:3985815-3985834 | None:intergenic | 40.0% | |
| ! | GTCTTCTAAGAGATGGATCA+AGG | + | chr2_4:3985842-3985861 | None:intergenic | 40.0% |
| !! | TGGTCTTGTCTTCTAAGAGA+TGG | + | chr2_4:3985849-3985868 | None:intergenic | 40.0% |
| AACAACACAACACCACAATG+GGG | - | chr2_4:3985870-3985889 | Msa0309470:intron | 40.0% | |
| CTTAGTGTAATCCATGCTTG+TGG | + | chr2_4:3985927-3985946 | None:intergenic | 40.0% | |
| GTTTCAATGTCATTGAGCTG+AGG | + | chr2_4:3986023-3986042 | None:intergenic | 40.0% | |
| TGTTACCTTAACCATTGGCA+AGG | + | chr2_4:3986132-3986151 | None:intergenic | 40.0% | |
| GCTTCTGTTACCTTAACCAT+TGG | + | chr2_4:3986137-3986156 | None:intergenic | 40.0% | |
| !! | AGATGAGTTTGAGGTTGATG+TGG | - | chr2_4:3986193-3986212 | Msa0309470:intron | 40.0% |
| ! | GTGTTATGCATTTGAAGCCA+AGG | + | chr2_4:3986269-3986288 | None:intergenic | 40.0% |
| ! | CCTGCTGATCATTCTCATTT+TGG | + | chr2_4:3986355-3986374 | None:intergenic | 40.0% |
| CCAAAATGAGAATGATCAGC+AGG | - | chr2_4:3986352-3986371 | Msa0309470:intron | 40.0% | |
| AATGATCAGCAGGGTTTCTT+GGG | - | chr2_4:3986362-3986381 | Msa0309470:intron | 40.0% | |
| AACTCCAATCATTAGGAAGG+AGG | - | chr2_4:3986628-3986647 | Msa0309470:intron | 40.0% | |
| ACTCCAATCATTAGGAAGGA+GGG | - | chr2_4:3986629-3986648 | Msa0309470:intron | 40.0% | |
| ! | AATTTCATCAGTCTGGCTTC+TGG | - | chr2_4:3986898-3986917 | Msa0309470:intron | 40.0% |
| ACCTTACAACTTGCACTATG+CGG | + | chr2_4:3987877-3987896 | None:intergenic | 40.0% | |
| AGGCAACTTGGAACAGATTT+AGG | - | chr2_4:3987905-3987924 | Msa0309470:CDS | 40.0% | |
| CTAACGTAGACTTCTTCAGA+TGG | + | chr2_4:3988091-3988110 | None:intergenic | 40.0% | |
| ! | GAGACACCAGAAATAGTGGA+AGG | + | chr2_4:3985625-3985644 | None:intergenic | 45.0% |
| !! | CGCAGTTGATGGAAGCAATA+TGG | + | chr2_4:3985711-3985730 | None:intergenic | 45.0% |
| ! | GGGTCCATGTTTCTGTTGTT+AGG | + | chr2_4:3985777-3985796 | None:intergenic | 45.0% |
| ACTGGTTAGTAGAAGGAGGA+GGG | + | chr2_4:3985797-3985816 | None:intergenic | 45.0% | |
| AACTGGTTAGTAGAAGGAGG+AGG | + | chr2_4:3985798-3985817 | None:intergenic | 45.0% | |
| TCATGTTCTGTTCCCCATTG+TGG | + | chr2_4:3985885-3985904 | None:intergenic | 45.0% | |
| TAAGACCAACTCATCCACCA+AGG | - | chr2_4:3985952-3985971 | Msa0309470:intron | 45.0% | |
| !!! | AAGTTTTGTGATGGTGGTGG+TGG | + | chr2_4:3985996-3986015 | None:intergenic | 45.0% |
| ACCACCACCATCACAAAACT+TGG | - | chr2_4:3985995-3986014 | Msa0309470:intron | 45.0% | |
| !! | TGAGGAGCCAAGTTTTGTGA+TGG | + | chr2_4:3986005-3986024 | None:intergenic | 45.0% |
| AACCATTGGCAAGGCTTCAA+TGG | + | chr2_4:3986123-3986142 | None:intergenic | 45.0% | |
| TGAAGCCTTGCCAATGGTTA+AGG | - | chr2_4:3986124-3986143 | Msa0309470:intron | 45.0% | |
| AAGGGAGAATGCAGTCAGAA+TGG | + | chr2_4:3986250-3986269 | None:intergenic | 45.0% | |
| ATTCTGACTGCATTCTCCCT+TGG | - | chr2_4:3986249-3986268 | Msa0309470:intron | 45.0% | |
| GAATGATCAGCAGGGTTTCT+TGG | - | chr2_4:3986361-3986380 | Msa0309470:intron | 45.0% | |
| ATGATCAGCAGGGTTTCTTG+GGG | - | chr2_4:3986363-3986382 | Msa0309470:intron | 45.0% | |
| TAGGCCTAATCGAAGCAAGT+TGG | + | chr2_4:3986427-3986446 | None:intergenic | 45.0% | |
| ! | CAATCTAGGACTGCTCGAAT+AGG | + | chr2_4:3986446-3986465 | None:intergenic | 45.0% |
| CTATTCGAGCAGTCCTAGAT+TGG | - | chr2_4:3986444-3986463 | Msa0309470:intron | 45.0% | |
| TCTCCCTCCTTCCTAATGAT+TGG | + | chr2_4:3986635-3986654 | None:intergenic | 45.0% | |
| GTCGTTAGATAACTGTCTGC+AGG | - | chr2_4:3986684-3986703 | Msa0309470:intron | 45.0% | |
| !! | GAGAGCATTGCTCATTTCGT+AGG | - | chr2_4:3986719-3986738 | Msa0309470:intron | 45.0% |
| !! | CATGAATTGATGATGGAGGC+TGG | + | chr2_4:3987357-3987376 | None:intergenic | 45.0% |
| CAGCCTCCATCATCAATTCA+TGG | - | chr2_4:3987355-3987374 | Msa0309470:intron | 45.0% | |
| AAGCGGCCATGAATTGATGA+TGG | + | chr2_4:3987364-3987383 | None:intergenic | 45.0% | |
| !! | CAATCTGGTGCTACACGAAA+TGG | + | chr2_4:3987769-3987788 | None:intergenic | 45.0% |
| CCTTACAACTTGCACTATGC+GGG | + | chr2_4:3987876-3987895 | None:intergenic | 45.0% | |
| AGTCGAAGGTCTTCAAGAAC+TGG | - | chr2_4:3988058-3988077 | Msa0309470:CDS | 45.0% | |
| ! | TTGTTGTTCTCAAGCTCCGT+CGG | + | chr2_4:3988175-3988194 | None:intergenic | 45.0% |
| ACGGAGCTTGAGAACAACAA+GGG | - | chr2_4:3988175-3988194 | Msa0309470:CDS | 45.0% | |
| !! | GTGGAGGATGAAAGTGTTGA+TGG | - | chr2_4:3988267-3988286 | Msa0309470:CDS | 45.0% |
| ! | ATAGGCCTTGGTGGATGAGT+TGG | + | chr2_4:3985960-3985979 | None:intergenic | 50.0% |
| !!! | TTTTGTGATGGTGGTGGTGG+TGG | + | chr2_4:3985993-3986012 | None:intergenic | 50.0% |
| !!! | GCCAAGTTTTGTGATGGTGG+TGG | + | chr2_4:3985999-3986018 | None:intergenic | 50.0% |
| !! | GGAGCCAAGTTTTGTGATGG+TGG | + | chr2_4:3986002-3986021 | None:intergenic | 50.0% |
| ! | GGAGCCAACTTGCTTCGATT+AGG | - | chr2_4:3986420-3986439 | Msa0309470:intron | 50.0% |
| AATAGGACCGCGTCCAATCT+AGG | + | chr2_4:3986460-3986479 | None:intergenic | 50.0% | |
| ACGAGCGTGGAGCTCAAAAT+AGG | + | chr2_4:3986477-3986496 | None:intergenic | 50.0% | |
| TGAGATCTCACACTGAAGCC+TGG | - | chr2_4:3986750-3986769 | Msa0309470:intron | 50.0% | |
| ! | TCTGGCTTCTGGCCATTGTA+AGG | - | chr2_4:3986909-3986928 | Msa0309470:intron | 50.0% |
| !! | CGGCCATGAATTGATGATGG+AGG | + | chr2_4:3987361-3987380 | None:intergenic | 50.0% |
| ! | GCTGATGTAGTGGAGGTAAG+CGG | + | chr2_4:3987381-3987400 | None:intergenic | 50.0% |
| !! | GAAGAGCCTCAAGTTGGAGA+TGG | + | chr2_4:3987406-3987425 | None:intergenic | 50.0% |
| AGGACTGAAGAGCCTCAAGT+TGG | + | chr2_4:3987412-3987431 | None:intergenic | 50.0% | |
| TGACATGCTGAAGAAGCCCT+TGG | - | chr2_4:3987707-3987726 | Msa0309470:CDS | 50.0% | |
| TGAAGAAGCCCTTGGACATG+AGG | - | chr2_4:3987715-3987734 | Msa0309470:CDS | 50.0% | |
| CCCGCATAGTGCAAGTTGTA+AGG | - | chr2_4:3987873-3987892 | Msa0309470:CDS | 50.0% | |
| TGTTGTTCTCAAGCTCCGTC+GGG | + | chr2_4:3988174-3988193 | None:intergenic | 50.0% | |
| GACGGAGCTTGAGAACAACA+AGG | - | chr2_4:3988174-3988193 | Msa0309470:CDS | 50.0% | |
| CGTCGACAATGACACGAGGA+CGG | + | chr2_4:3985584-3985603 | None:intergenic | 55.0% | |
| ! | CGTCCTCGTGTCATTGTCGA+CGG | - | chr2_4:3985582-3985601 | Msa0309470:CDS | 55.0% |
| ACACCGTCGACAATGACACG+AGG | + | chr2_4:3985588-3985607 | None:intergenic | 55.0% | |
| TCAATGGCCGAAGGAGATGC+TGG | + | chr2_4:3986107-3986126 | None:intergenic | 55.0% | |
| GGCCATTGAAGCCTTGCCAA+TGG | - | chr2_4:3986118-3986137 | Msa0309470:intron | 55.0% | |
| TGTAGCTCGTGACGGCATAC+GGG | + | chr2_4:3986296-3986315 | None:intergenic | 55.0% | |
| CTGTAGCTCGTGACGGCATA+CGG | + | chr2_4:3986297-3986316 | None:intergenic | 55.0% | |
| GTATGCCGTCACGAGCTACA+GGG | - | chr2_4:3986296-3986315 | Msa0309470:intron | 55.0% | |
| GCAGGGTTTCTTGGGGTTTG+AGG | - | chr2_4:3986370-3986389 | Msa0309470:intron | 55.0% | |
| GAGCAGTCCTAGATTGGACG+CGG | - | chr2_4:3986450-3986469 | Msa0309470:intron | 55.0% | |
| TTCTACTACGAGCACGAGCG+TGG | + | chr2_4:3986490-3986509 | None:intergenic | 55.0% | |
| AACTGTCTGCAGGTAGCGCT+TGG | - | chr2_4:3986694-3986713 | Msa0309470:intron | 55.0% | |
| ! | GATGGTGGCTGATGTAGTGG+AGG | + | chr2_4:3987388-3987407 | None:intergenic | 55.0% |
| ! | GGAGATGGTGGCTGATGTAG+TGG | + | chr2_4:3987391-3987410 | None:intergenic | 55.0% |
| CAGCCACCATCTCCAACTTG+AGG | - | chr2_4:3987397-3987416 | Msa0309470:intron | 55.0% | |
| !! | GAGCCTCAAGTTGGAGATGG+TGG | + | chr2_4:3987403-3987422 | None:intergenic | 55.0% |
| GGCTCTTCAGTCCTGTTCGA+AGG | - | chr2_4:3987418-3987437 | Msa0309470:CDS | 55.0% | |
| AAGTCTGACACGACACCCGA+CGG | - | chr2_4:3988156-3988175 | Msa0309470:CDS | 55.0% | |
| CGTCTTGCGTTCGAGAGAAG+CGG | + | chr2_4:3988305-3988324 | None:intergenic | 55.0% | |
| CGCTTCTCTCGAACGCAAGA+CGG | - | chr2_4:3988303-3988322 | Msa0309470:CDS | 55.0% | |
| GGTGGTGCAATAGGCCTTGG+TGG | + | chr2_4:3985969-3985988 | None:intergenic | 60.0% | |
| ! | GGTGGTGGTGCAATAGGCCT+TGG | + | chr2_4:3985972-3985991 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGGTGGTGCAAT+AGG | + | chr2_4:3985978-3985997 | None:intergenic | 60.0% |
| !! | TGTGATGGTGGTGGTGGTGG+TGG | + | chr2_4:3985990-3986009 | None:intergenic | 60.0% |
| GCCACCTCCAGCATCTCCTT+CGG | - | chr2_4:3986097-3986116 | Msa0309470:intron | 60.0% | |
| ATGGCCGAAGGAGATGCTGG+AGG | + | chr2_4:3986104-3986123 | None:intergenic | 60.0% | |
| GGCAAGGCTTCAATGGCCGA+AGG | + | chr2_4:3986116-3986135 | None:intergenic | 60.0% | |
| GTAGCTCGTGACGGCATACG+GGG | + | chr2_4:3986295-3986314 | None:intergenic | 60.0% | |
| CGTATGCCGTCACGAGCTAC+AGG | - | chr2_4:3986295-3986314 | Msa0309470:intron | 60.0% | |
| CAACGCCCTGTAGCTCGTGA+CGG | + | chr2_4:3986304-3986323 | None:intergenic | 60.0% | |
| TGTCTGCAGGTAGCGCTTGG+TGG | - | chr2_4:3986697-3986716 | Msa0309470:intron | 60.0% | |
| TTGCGTTCGAGAGAAGCGGC+TGG | + | chr2_4:3988301-3988320 | None:intergenic | 60.0% | |
| !! | GATGGTGGTGGTGGTGGTGG+TGG | + | chr2_4:3985987-3986006 | None:intergenic | 65.0% |
| GCCGAAGGAGATGCTGGAGG+TGG | + | chr2_4:3986101-3986120 | None:intergenic | 65.0% | |
| GGAGATGCTGGAGGTGGCCC+CGG | + | chr2_4:3986095-3986114 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 3985551 | 3988356 | 3985551 | ID=Msa0309470;Name=Msa0309470 |
| chr2_4 | mRNA | 3985551 | 3988356 | 3985551 | ID=Msa0309470-mRNA-1;Parent=Msa0309470;Name=Msa0309470-mRNA-1;_AED=0.20;_eAED=0.20;_QI=16|0|0.33|0.33|1|1|3|0|381 |
| chr2_4 | exon | 3985551 | 3985671 | 3985551 | ID=Msa0309470-mRNA-1:exon:1427;Parent=Msa0309470-mRNA-1 |
| chr2_4 | exon | 3986468 | 3986549 | 3986468 | ID=Msa0309470-mRNA-1:exon:1426;Parent=Msa0309470-mRNA-1 |
| chr2_4 | exon | 3987398 | 3988356 | 3987398 | ID=Msa0309470-mRNA-1:exon:1425;Parent=Msa0309470-mRNA-1 |
| chr2_4 | five_prime_UTR | 3988341 | 3988356 | 3988341 | ID=Msa0309470-mRNA-1:five_prime_utr;Parent=Msa0309470-mRNA-1 |
| chr2_4 | CDS | 3987398 | 3988340 | 3987398 | ID=Msa0309470-mRNA-1:cds;Parent=Msa0309470-mRNA-1 |
| chr2_4 | CDS | 3986468 | 3986549 | 3986468 | ID=Msa0309470-mRNA-1:cds;Parent=Msa0309470-mRNA-1 |
| chr2_4 | CDS | 3985551 | 3985671 | 3985551 | ID=Msa0309470-mRNA-1:cds;Parent=Msa0309470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
