AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0191990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191990 MtrunA17_Chr2g0282211 93.103 580 23 3 326 888 345 924 0.0 1113
Msa0191990 MtrunA17_Chr2g0282211 78.049 287 21 2 90 334 1 287 1.34e-123 396
Msa0191990 MtrunA17_Chr4g0047301 65.476 588 175 6 319 888 337 914 0.0 758
Msa0191990 MtrunA17_Chr4g0047301 58.996 239 54 4 114 310 25 261 4.07e-74 261
Msa0191990 MtrunA17_Chr4g0009054 85.714 322 21 3 330 640 2 309 0.0 531
Msa0191990 MtrunA17_Chr1g0211131 39.868 607 319 12 316 883 466 1065 2.43e-130 417
Msa0191990 MtrunA17_Chr1g0211131 36.667 210 89 5 131 297 92 300 8.86e-26 114
Msa0191990 MtrunA17_Chr1g0198021 52.536 276 117 4 620 883 108 381 9.39e-92 295
Msa0191990 MtrunA17_Chr2g0317631 52.347 277 118 4 620 884 277 551 1.42e-88 295
Msa0191990 MtrunA17_Chr8g0376201 48.763 283 123 5 619 883 160 438 7.36e-85 280
Msa0191990 MtrunA17_Chr8g0360171 50.542 277 123 4 620 884 472 746 2.21e-78 270
Msa0191990 MtrunA17_Chr8g0376111 53.812 223 95 3 623 838 13 234 1.01e-74 248
Msa0191990 MtrunA17_Chr7g0233611 46.718 259 127 4 622 873 7 261 7.69e-71 237
Msa0191990 MtrunA17_Chr7g0233631 46.512 258 127 4 623 873 8 261 3.70e-69 232
Msa0191990 MtrunA17_Chr4g0045101 50.224 223 103 3 623 838 7 228 2.79e-68 229
Msa0191990 MtrunA17_Chr7g0222941 58.286 175 65 2 620 788 61 233 2.84e-66 221
Msa0191990 MtrunA17_Chr2g0317641 60.116 173 61 2 678 842 1 173 2.27e-65 217
Msa0191990 MtrunA17_Chr2g0317611 62.832 113 40 1 620 732 64 174 4.15e-46 163
Msa0191990 MtrunA17_Chr2g0285321 43.458 214 105 6 678 877 1 212 1.72e-43 157
Msa0191990 MtrunA17_Chr2g0317621 39.610 154 79 4 744 883 14 167 4.16e-26 107
Msa0191990 MtrunA17_Chr4g0001491 37.162 148 89 1 664 811 153 296 2.71e-25 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191990 AT2G33770.1 44.382 890 370 13 110 882 20 901 0.0 712
Msa0191990 AT2G16920.1 38.880 625 318 15 316 888 489 1101 7.08e-126 407
Msa0191990 AT2G16920.1 34.468 235 110 5 117 308 116 349 5.31e-34 141
Msa0191990 AT2G16920.2 38.880 625 318 15 316 888 489 1101 7.08e-126 407
Msa0191990 AT2G16920.2 34.468 235 110 5 117 308 116 349 5.31e-34 141
Msa0191990 AT1G53025.1 52.593 270 115 3 620 878 244 511 4.63e-86 285
Msa0191990 AT1G53025.2 52.593 270 115 3 620 878 244 511 7.11e-86 285
Msa0191990 AT3G15355.1 54.656 247 100 3 620 856 305 549 1.49e-83 281
Msa0191990 AT1G53023.1 48.727 275 114 6 620 877 21 285 3.38e-78 257
Msa0191990 AT5G41700.3 28.289 152 100 2 651 802 3 145 2.29e-14 71.6

Find 203 sgRNAs with CRISPR-Local

Find 461 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATGGTGCACTACATTTC+TGG 0.179738 2_1:+7736481 Msa0191990:intron
TTAAAAGCTCTTTCGACTTT+TGG 0.188580 2_1:+7732594 Msa0191990:CDS
GAGTTCACCATCAAGGTTTC+TGG 0.189989 2_1:+7737577 Msa0191990:three_prime_UTR
TCCTGTATTGGCAATGTTAC+TGG 0.190119 2_1:+7734993 Msa0191990:CDS
CTAGCCATACTATGCTTATT+AGG 0.215596 2_1:-7734435 None:intergenic
GAAGGTGATTGCGTAATTAA+TGG 0.233180 2_1:+7733940 Msa0191990:CDS
CGGTACCACTCCACGTATTT+AGG 0.255696 2_1:-7736558 None:intergenic
TTTCCCTTACCTTTCCCTTC+TGG 0.262263 2_1:-7735298 None:intergenic
TGCGAATCTTCAAGAAAATT+AGG 0.265210 2_1:-7734075 None:intergenic
TGGCTTGCCTCGGTTCCTTT+AGG 0.278669 2_1:+7734240 Msa0191990:CDS
ACAAATTAATATTACACATT+AGG 0.283107 2_1:-7737606 None:intergenic
TGTTGACGTATTAGTGGATT+TGG 0.290027 2_1:+7733849 Msa0191990:intron
ACGAATCTTCAGAAGTTTCT+TGG 0.302328 2_1:-7733908 None:intergenic
TAAGAAAGATTGGGCGAAAA+AGG 0.304249 2_1:+7735942 Msa0191990:CDS
TCTGTTCAACTTGTTCCTTT+TGG 0.304307 2_1:-7734383 None:intergenic
CACATCCAAGCCAGATGATT+TGG 0.307229 2_1:+7734746 Msa0191990:CDS
TTCCCCGACTCATACAAATT+AGG 0.307302 2_1:-7736520 None:intergenic
CAGGTTCGGTGTATGTTAAT+TGG 0.313086 2_1:+7734220 Msa0191990:intron
TCCATATTGTGAAGTTATTC+CGG 0.328272 2_1:+7735723 Msa0191990:CDS
GAGCATATTATCAAGTTTAG+AGG 0.332505 2_1:+7733717 Msa0191990:CDS
TATCCAGCTTCATTGAAATA+AGG 0.334312 2_1:-7736661 None:intergenic
TTGCGCCCTATGAAATATTT+CGG 0.336021 2_1:+7735174 Msa0191990:CDS
GCAGCCATCGTTGGTGCGTC+AGG 0.343392 2_1:+7736288 Msa0191990:CDS
TAGACCCAACATGGATTTGC+AGG 0.349124 2_1:-7736755 None:intergenic
AGTTATTCGGATAACTGATT+TGG 0.358225 2_1:-7734950 None:intergenic
CAGTTACCTACAGAGTTATT+CGG 0.361797 2_1:-7734963 None:intergenic
ACAGGATTTAAAATTATGTT+TGG 0.365458 2_1:+7737460 Msa0191990:CDS
CCCGACAGGACAGGGATAAC+TGG 0.366013 2_1:-7733218 None:intergenic
CGTGGCTTGGTCAGGTTCAA+AGG 0.367253 2_1:+7733965 Msa0191990:CDS
TCTTTCTTGTCGAGAAAATC+AGG 0.369067 2_1:-7735631 None:intergenic
ACCAATCCGAAATATTTCAT+AGG 0.370935 2_1:-7735180 None:intergenic
GTGGAAATTCCAGTGCAAAC+TGG 0.372012 2_1:+7733158 Msa0191990:intron
CTTTGTAGGTTAAGAAAGAT+TGG 0.373014 2_1:+7735932 Msa0191990:intron
ACCGGAATAACTTCACAATA+TGG 0.380054 2_1:-7735724 None:intergenic
ACATATACTTGTTGCATGTA+AGG 0.380265 2_1:+7737372 Msa0191990:CDS
GCAGGATGTGAATCGGTCTC+AGG 0.380716 2_1:-7735670 None:intergenic
ATCCTGTCGAAGTTCCCTTT+TGG 0.382551 2_1:-7737444 None:intergenic
TCTGAAGATTCGTTCCATTT+CGG 0.383584 2_1:+7733918 Msa0191990:CDS
TACGCAATCACCTTCCGAAA+TGG 0.394051 2_1:-7733932 None:intergenic
TATGACAGGCATAGAGTTGA+TGG 0.403682 2_1:+7733597 Msa0191990:intron
CACAATATCGCCAAAACAAC+AGG 0.405370 2_1:-7734829 None:intergenic
AATCCTAATTTGTATGAGTC+GGG 0.406101 2_1:+7736517 Msa0191990:CDS
GAAAATGCCTCAGCAAGCTT+AGG 0.411552 2_1:-7737493 None:intergenic
AAAGCTTACAGGTGGTTCAT+TGG 0.416999 2_1:-7736367 None:intergenic
TGAAACAAATATTGAGGAGT+TGG 0.417478 2_1:+7735238 Msa0191990:CDS
CTCACCTGCAAATCCATGTT+GGG 0.417765 2_1:+7736751 Msa0191990:CDS
TGAAGAACTGTGGAAGATCC+AGG 0.417931 2_1:-7736598 None:intergenic
TATCTTGAAGGAGCTCCTAT+TGG 0.419954 2_1:+7737397 Msa0191990:CDS
ATATTTGTTTCATAAGAAAC+AGG 0.423199 2_1:-7735227 None:intergenic
TAATGGGCCGTGGCTTGGTC+AGG 0.425779 2_1:+7733957 Msa0191990:CDS
CCTGTCGGGCAAATCTCCTT+TGG 0.428432 2_1:+7733232 Msa0191990:CDS
GAAAATGCCGGCTTTAATGC+TGG 0.431753 2_1:-7735539 None:intergenic
AAGCTTACAGGTGGTTCATT+GGG 0.434273 2_1:-7736366 None:intergenic
GGTTCTCCAGCCAAATCATC+TGG 0.436135 2_1:-7734756 None:intergenic
ATGGTCATGTGGAGGTGAAA+TGG 0.437018 2_1:+7735024 Msa0191990:CDS
CAAACTGGGCAAATCTCCTT+TGG 0.438040 2_1:+7733173 Msa0191990:CDS
AAGCCTTATTTCAATGAAGC+TGG 0.440632 2_1:+7736658 Msa0191990:CDS
AATGTTACTGGTTTCAAAGA+TGG 0.442138 2_1:+7735005 Msa0191990:CDS
AACTGTCACCTGTCCTGTAT+TGG 0.444670 2_1:+7734981 Msa0191990:CDS
GCATTTCCCTCTTCAAATGT+AGG 0.445438 2_1:-7735607 None:intergenic
ATTAATATTACACATTAGGT+TGG 0.445834 2_1:-7737602 None:intergenic
GTTCAATGGCAGCTTGAGGC+AGG 0.448278 2_1:-7735510 None:intergenic
TAACTTCACAATATGGAGTT+GGG 0.448536 2_1:-7735717 None:intergenic
ACCAGTAACATTGCCAATAC+AGG 0.454925 2_1:-7734994 None:intergenic
TGGAAATTCCAGTGCAAACT+GGG 0.457598 2_1:+7733159 Msa0191990:intron
GTAATTAATGGGCCGTGGCT+TGG 0.460290 2_1:+7733952 Msa0191990:CDS
TTTGTAGGTTAAGAAAGATT+GGG 0.461128 2_1:+7735933 Msa0191990:intron
CTCAGATGACTGATTCAGAC+TGG 0.461326 2_1:+7733623 Msa0191990:CDS
AGGTGGTTCATTGGGATACT+CGG 0.464479 2_1:-7736358 None:intergenic
CAAATCATCTGGCTTGGATG+TGG 0.466764 2_1:-7734745 None:intergenic
TCCAGTTATCCCTGTCCTGT+CGG 0.467183 2_1:+7733217 Msa0191990:CDS
CCAGTTATCCCTGTCCTGTC+GGG 0.467525 2_1:+7733218 Msa0191990:CDS
AAGGTGATTGCGTAATTAAT+GGG 0.467790 2_1:+7733941 Msa0191990:CDS
CAGGTTCAAAAGAAATGATC+TGG 0.468718 2_1:+7732569 Msa0191990:intron
ACCTTTCCCTTCTGGTCAGA+AGG 0.469296 2_1:-7735290 None:intergenic
CCTCACCTGCAAATCCATGT+TGG 0.470353 2_1:+7736750 Msa0191990:CDS
CCAATCCGAAATATTTCATA+GGG 0.471195 2_1:-7735179 None:intergenic
TCCAGCCAAATCATCTGGCT+TGG 0.472208 2_1:-7734751 None:intergenic
AAGTGAGCATGAAAACCAAA+AGG 0.473074 2_1:+7737429 Msa0191990:CDS
CGAAGTTGAGTTCACCATCA+AGG 0.473832 2_1:+7737570 Msa0191990:three_prime_UTR
GTTGGAACCAGAAACCTTGA+TGG 0.474030 2_1:-7737584 None:intergenic
GTGGATTTGGAAAACAATCA+AGG 0.476648 2_1:+7733862 Msa0191990:intron
TCGCATGCAAACTGGCAACT+TGG 0.478429 2_1:+7734333 Msa0191990:CDS
AAACCTTGTGGTGTGTCATA+TGG 0.479650 2_1:+7737690 Msa0191990:three_prime_UTR
CCAAAGGAGATTTGCCCGAC+AGG 0.481494 2_1:-7733232 None:intergenic
GTCACTACCGCTGCTCTCAC+TGG 0.484987 2_1:-7733653 None:intergenic
TAAGTGTATTGTTTGATGAC+GGG 0.485334 2_1:+7734001 Msa0191990:CDS
TCGGATAACTGATTTGGTAC+AGG 0.485464 2_1:-7734944 None:intergenic
CCATTGCTGTCTAAAGAAAC+CGG 0.485769 2_1:-7735742 None:intergenic
AAAAGGGTTGCCGATATCTC+AGG 0.486594 2_1:+7735831 Msa0191990:CDS
ACAAAGCTAGTTTCTTGAAA+CGG 0.487062 2_1:-7733291 None:intergenic
CTGTCCAGATGGGTCTGATA+AGG 0.487275 2_1:-7733809 None:intergenic
GCACTCACAGTTTCTGTCGT+TGG 0.488345 2_1:-7734777 None:intergenic
AATGCTGGAGAAAAGTTCAA+TGG 0.490090 2_1:-7735524 None:intergenic
GGAGATTTGCCCGACAGGAC+AGG 0.490299 2_1:-7733227 None:intergenic
ATAACTTCACAATATGGAGT+TGG 0.491759 2_1:-7735718 None:intergenic
TGCTCCTTATCAGACCCATC+TGG 0.492187 2_1:+7733805 Msa0191990:CDS
GTATGTTAATTGGCTTGCCT+CGG 0.492235 2_1:+7734230 Msa0191990:CDS
TTCGAGAGAACATTTGCTTA+CGG 0.492444 2_1:+7733772 Msa0191990:CDS
GTGGCTTGGTCAGGTTCAAA+GGG 0.493198 2_1:+7733966 Msa0191990:CDS
ACCCTCCCCATCTGTCCAGA+TGG 0.500046 2_1:-7733820 None:intergenic
AACCAAAAGGGAACTTCGAC+AGG 0.501479 2_1:+7737442 Msa0191990:CDS
ATAAGTCTAGCAATCAAAGA+TGG 0.502655 2_1:+7734661 Msa0191990:CDS
GCTTCCAGTTGCAGACCAAA+AGG 0.507212 2_1:+7734368 Msa0191990:CDS
ATCAGACCCATCTGGACAGA+TGG 0.507301 2_1:+7733813 Msa0191990:CDS
ACATTTGAATTAGAACCTAA+AGG 0.507612 2_1:-7734255 None:intergenic
TTCTTATGAAACAAATATTG+AGG 0.508341 2_1:+7735232 Msa0191990:CDS
CATTTCCCTCTTCAAATGTA+GGG 0.509483 2_1:-7735606 None:intergenic
AAATCCTAATTTGTATGAGT+CGG 0.511272 2_1:+7736516 Msa0191990:CDS
CCCTATGAAATATTTCGGAT+TGG 0.516222 2_1:+7735179 Msa0191990:CDS
TTAAGTGTATTGTTTGATGA+CGG 0.518697 2_1:+7734000 Msa0191990:CDS
TTGATAATATGCTCTGAGCT+TGG 0.522688 2_1:-7733708 None:intergenic
TGGTCATGTGGAGGTGAAAT+GGG 0.524305 2_1:+7735025 Msa0191990:CDS
CCCTCCCCATCTGTCCAGAT+GGG 0.526969 2_1:-7733819 None:intergenic
AAAATGCCTCAGCAAGCTTA+GGG 0.527113 2_1:-7737492 None:intergenic
GCTGGATATGACCAACAGAT+TGG 0.528690 2_1:+7736676 Msa0191990:CDS
CTTGAAGGAGCTCCTATTGG+AGG 0.529520 2_1:+7737400 Msa0191990:CDS
CAAACTGGCAACTTGGTGAC+TGG 0.530987 2_1:+7734340 Msa0191990:CDS
TCCAAGCCAGATGATTTGGC+TGG 0.531372 2_1:+7734750 Msa0191990:CDS
CTCATGCGAGCAGCCATCGT+TGG 0.532120 2_1:+7736279 Msa0191990:CDS
CCATTCTTTCTTCGAAAACA+CGG 0.534870 2_1:-7736254 None:intergenic
GAGATTTGCCCGACAGGACA+GGG 0.535811 2_1:-7733226 None:intergenic
GCATGTAAGGCATATCTTGA+AGG 0.536205 2_1:+7737385 Msa0191990:CDS
GTGGAGGTGAAATGGGCTAC+TGG 0.537468 2_1:+7735032 Msa0191990:CDS
ATTGCGTAATTAATGGGCCG+TGG 0.539539 2_1:+7733947 Msa0191990:CDS
ATGTGAACACTCCTCCATGC+TGG 0.539836 2_1:+7734274 Msa0191990:CDS
TAAGTCTAGCAATCAAAGAT+GGG 0.540967 2_1:+7734662 Msa0191990:CDS
CCGGTTTCTTTAGACAGCAA+TGG 0.542172 2_1:+7735742 Msa0191990:CDS
ACAGCAAGAATGGAGCATCC+TGG 0.543842 2_1:+7735966 Msa0191990:CDS
CACAGTCCCTACATTTGAAG+AGG 0.550892 2_1:+7735600 Msa0191990:CDS
TCAGACCCATCTGGACAGAT+GGG 0.551064 2_1:+7733814 Msa0191990:CDS
CTTCAGCTCTACCAATCTGT+TGG 0.553311 2_1:-7736687 None:intergenic
TTTGTATCTGTGACAAGCAT+AGG 0.556365 2_1:+7733309 Msa0191990:CDS
GTAGACTGCAACGTGCTCGC+AGG 0.559026 2_1:-7735688 None:intergenic
CAACAGATTGGTAGAGCTGA+AGG 0.563152 2_1:+7736688 Msa0191990:CDS
AAGAAAGATTTGGAAACTTG+TGG 0.567107 2_1:+7735646 Msa0191990:CDS
ATTTCTTAGTAGACCCAACA+TGG 0.568180 2_1:-7736764 None:intergenic
AAGATTCGTTCCATTTCGGA+AGG 0.568477 2_1:+7733922 Msa0191990:CDS
CGTGCTCGCAGGATGTGAAT+CGG 0.569550 2_1:-7735677 None:intergenic
AAATCATCTGGCTTGGATGT+GGG 0.571782 2_1:-7734744 None:intergenic
CAAATGTTCTCTCGAATGAG+AGG 0.571997 2_1:-7733765 None:intergenic
AAGTCTGCCTTCTGACCAGA+AGG 0.572093 2_1:+7735283 Msa0191990:CDS
TAAGTACGAGATCACTACCT+TGG 0.572957 2_1:+7734026 Msa0191990:CDS
TGGTCAGGTTCAAAGGGTGG+TGG 0.573707 2_1:+7733972 Msa0191990:CDS
CAGCGGTAGTGACGATCAAG+AGG 0.576935 2_1:+7733663 Msa0191990:CDS
GAGAAGGACTTGAAGAACTG+TGG 0.579103 2_1:-7736608 None:intergenic
ACCCATCTGGACAGATGGGG+AGG 0.579182 2_1:+7733818 Msa0191990:CDS
CAGGATGTGAATCGGTCTCA+GGG 0.581404 2_1:-7735669 None:intergenic
GGTCGATGCAAAAGAGCATA+CGG 0.583136 2_1:+7734698 Msa0191990:CDS
AGTGAGCATGAAAACCAAAA+GGG 0.588026 2_1:+7737430 Msa0191990:CDS
AGCATACGGTAAACGTACAA+TGG 0.588340 2_1:+7734712 Msa0191990:CDS
GGTGGTTCATTGGGATACTC+GGG 0.589885 2_1:-7736357 None:intergenic
GCGACTGAAGTGTGGAACCC+TGG 0.591048 2_1:+7736580 Msa0191990:CDS
GGGTCTACTAAGAAATCCGC+CGG 0.593303 2_1:+7736771 Msa0191990:CDS
CTTTGAACCTGACCAAGCCA+CGG 0.595882 2_1:-7733964 None:intergenic
AACTGAAAATTAAATGCCAA+AGG 0.596147 2_1:-7733248 None:intergenic
CTCTTCAAATGTAGGGACTG+TGG 0.596428 2_1:-7735599 None:intergenic
TTCAATGGCAGCTTGAGGCA+GGG 0.599370 2_1:-7735509 None:intergenic
AGTTATCCGAATAACTCTGT+AGG 0.599419 2_1:+7734957 Msa0191990:CDS
ACATGGATTTGCAGGTGAGG+AGG 0.599540 2_1:-7736747 None:intergenic
CAGCCATCGTTGGTGCGTCA+GGG 0.600281 2_1:+7736289 Msa0191990:CDS
GATAAATGTGAAAAGCATCA+AGG 0.600926 2_1:+7735469 Msa0191990:CDS
TTCAATGAGTGACTTGAATG+TGG 0.607243 2_1:+7734905 Msa0191990:CDS
TAACATTGCCAATACAGGAC+AGG 0.607869 2_1:-7734989 None:intergenic
AAGATGGGGTGTCATTCTAT+CGG 0.608470 2_1:+7734677 Msa0191990:CDS
ATCCTAATTTGTATGAGTCG+GGG 0.609165 2_1:+7736518 Msa0191990:CDS
GCCTTCTGACCAGAAGGGAA+AGG 0.614161 2_1:+7735289 Msa0191990:CDS
ACAGTCCCTACATTTGAAGA+GGG 0.616720 2_1:+7735601 Msa0191990:CDS
GGCTACTGGTTTAATGACCA+AGG 0.618934 2_1:+7735046 Msa0191990:CDS
CCAACATGGATTTGCAGGTG+AGG 0.621597 2_1:-7736750 None:intergenic
TGTCCCTGACGCACCAACGA+TGG 0.623841 2_1:-7736292 None:intergenic
TCAGATGACTGATTCAGACT+GGG 0.625007 2_1:+7733624 Msa0191990:CDS
ATGGTTCAGATCAGTTGAAG+CGG 0.625128 2_1:+7735761 Msa0191990:CDS
GAAGAACTGTGGAAGATCCA+GGG 0.632547 2_1:-7736597 None:intergenic
GCTTGGTCAGGTTCAAAGGG+TGG 0.637694 2_1:+7733969 Msa0191990:CDS
TTACGACTCTGAATTGCCAA+AGG 0.638582 2_1:-7733189 None:intergenic
TCAAGTTTAGAGGAAAGCAT+CGG 0.640460 2_1:+7733727 Msa0191990:CDS
TGGTTTCAAAGATGGTCATG+TGG 0.641331 2_1:+7735013 Msa0191990:CDS
AAAAGTTCAATGGCAGCTTG+AGG 0.642640 2_1:-7735514 None:intergenic
GTTTAGAGGAAAGCATCGGT+AGG 0.644331 2_1:+7733731 Msa0191990:CDS
TGGGTGCTCAACAAGTTCGT+AGG 0.644662 2_1:-7734799 None:intergenic
CTATCCAGGGCAGAGAGTGA+AGG 0.645378 2_1:+7734107 Msa0191990:intron
CCCATCTGGACAGATGGGGA+GGG 0.645750 2_1:+7733819 Msa0191990:CDS
AGTCTCCTAAATACGTGGAG+TGG 0.650953 2_1:+7736553 Msa0191990:CDS
ATGGTGCACTACATTTCTGG+CGG 0.653771 2_1:+7736484 Msa0191990:CDS
AAGTCTAGCAATCAAAGATG+GGG 0.654907 2_1:+7734663 Msa0191990:CDS
GTGTGAAGTACGCACCAGGA+AGG 0.655095 2_1:-7735996 None:intergenic
GTGGTACCGCGACTGAAGTG+TGG 0.655672 2_1:+7736572 Msa0191990:CDS
GAGTCTTCCAGTGAGAGCAG+CGG 0.657537 2_1:+7733646 Msa0191990:CDS
GGTTCATTGGGATACTCGGG+AGG 0.657691 2_1:-7736354 None:intergenic
TCAGGGACACCTTATCATGA+CGG 0.665159 2_1:+7736306 Msa0191990:CDS
ACTCCTCCCTAAGCTTGCTG+AGG 0.670365 2_1:+7737486 Msa0191990:CDS
ATGCCTCAGCAAGCTTAGGG+AGG 0.672343 2_1:-7737489 None:intergenic
ATTAGAACCTAAAGGAACCG+AGG 0.675588 2_1:-7734247 None:intergenic
CAGACCCATCTGGACAGATG+GGG 0.678401 2_1:+7733815 Msa0191990:CDS
AAGCCATATGACACACCACA+AGG 0.681463 2_1:-7737693 None:intergenic
GTTTGAGTCTCCTAAATACG+TGG 0.681686 2_1:+7736548 Msa0191990:CDS
AGGGTTCCACACTTCAGTCG+CGG 0.684110 2_1:-7736578 None:intergenic
TTGGAATCTTGCCAGCATGG+AGG 0.693099 2_1:-7734285 None:intergenic
TCTACTAAGAAATCCGCCGG+AGG 0.713451 2_1:+7736774 Msa0191990:CDS
GTTCATTGGGATACTCGGGA+GGG 0.726068 2_1:-7736353 None:intergenic
AGTCTGCCTTCTGACCAGAA+GGG 0.732957 2_1:+7735284 Msa0191990:CDS
TTTCAAAGATGGTCATGTGG+AGG 0.745253 2_1:+7735016 Msa0191990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCAGATTAAATATTAA+TGG - chr2_1:7736093-7736112 None:intergenic 10.0%
!!! TTCATTTTATTAAACTAAAA+AGG + chr2_1:7737124-7737143 Msa0191990:intron 10.0%
!! AAAATTAATTGATGAAATAG+TGG + chr2_1:7731408-7731427 Msa0191990:intron 15.0%
!!! GATTTTAACTTTTATTTGTA+GGG - chr2_1:7732168-7732187 None:intergenic 15.0%
!!! TGATTTTAACTTTTATTTGT+AGG - chr2_1:7732169-7732188 None:intergenic 15.0%
!! ACAAATAAAAGTTAAAATCA+TGG + chr2_1:7732169-7732188 Msa0191990:intron 15.0%
!! ATTAAATATCAGTCTTAATT+TGG + chr2_1:7732232-7732251 Msa0191990:intron 15.0%
!!! AGTTTTATTTAATCAAACAT+AGG + chr2_1:7732398-7732417 Msa0191990:intron 15.0%
!!! GTTTTATTTAATCAAACATA+GGG + chr2_1:7732399-7732418 Msa0191990:intron 15.0%
!!! AGATTTTTTTTGTGATTTTT+TGG - chr2_1:7733084-7733103 None:intergenic 15.0%
!! AGAAATATTGACAATAAATA+AGG - chr2_1:7733473-7733492 None:intergenic 15.0%
!! TTATTGTCAATATTTCTTTA+CGG + chr2_1:7733476-7733495 Msa0191990:intron 15.0%
!!! TAATTATATTGAAAGCATTT+TGG + chr2_1:7735883-7735902 Msa0191990:intron 15.0%
!! ACAAATTAATATTACACATT+AGG - chr2_1:7737609-7737628 None:intergenic 15.0%
!!! TTTTTGAGTGTTTAAAATCA+TGG + chr2_1:7731849-7731868 Msa0191990:intron 20.0%
!!! TTTTGAGTGTTTAAAATCAT+GGG + chr2_1:7731850-7731869 Msa0191990:intron 20.0%
!! ATTCTAGTGATTTAGATATT+TGG + chr2_1:7732009-7732028 Msa0191990:intron 20.0%
!! CAAATTTATTAACTAGTATC+TGG + chr2_1:7732835-7732854 Msa0191990:intron 20.0%
!!! TTTTTTTGTGATTTTTTGGA+AGG - chr2_1:7733080-7733099 None:intergenic 20.0%
!! ACAATAAAAGTAGGAAATAA+TGG - chr2_1:7733531-7733550 None:intergenic 20.0%
!!! TAAAATCTTATCATTTTCCA+AGG - chr2_1:7734046-7734065 None:intergenic 20.0%
!! ATGGATGAATTGTTTATAAT+TGG + chr2_1:7734489-7734508 Msa0191990:intron 20.0%
!! TGGATGAATTGTTTATAATT+GGG + chr2_1:7734490-7734509 Msa0191990:intron 20.0%
!!! TCATAAATACTCATGAATTT+TGG + chr2_1:7734598-7734617 Msa0191990:intron 20.0%
!! ATATATTCACAAAAAGTTGA+GGG - chr2_1:7735076-7735095 None:intergenic 20.0%
!! AATATATTCACAAAAAGTTG+AGG - chr2_1:7735077-7735096 None:intergenic 20.0%
!! ATATTTGTTTCATAAGAAAC+AGG - chr2_1:7735230-7735249 None:intergenic 20.0%
!! TTCTTATGAAACAAATATTG+AGG + chr2_1:7735232-7735251 Msa0191990:CDS 20.0%
!!! AATTTTATAACCTGAGATAT+CGG - chr2_1:7735844-7735863 None:intergenic 20.0%
!! TTCTTGTAAGTAAATTAACT+TGG - chr2_1:7736142-7736161 None:intergenic 20.0%
!! AGTTAATTTACTTACAAGAA+AGG + chr2_1:7736142-7736161 Msa0191990:intron 20.0%
!! GTTAATTTACTTACAAGAAA+GGG + chr2_1:7736143-7736162 Msa0191990:intron 20.0%
!! AATATCTCATTCTATCATTA+TGG + chr2_1:7736442-7736461 Msa0191990:intron 20.0%
!! GAGGAAAATTATTAGTATTA+TGG + chr2_1:7736911-7736930 Msa0191990:intron 20.0%
!! AAATTATTAGTATTATGGAG+AGG + chr2_1:7736916-7736935 Msa0191990:intron 20.0%
!! TTCAAGAAACTAATGTTAAT+TGG - chr2_1:7736979-7736998 None:intergenic 20.0%
!!! ACAGGATTTAAAATTATGTT+TGG + chr2_1:7737460-7737479 Msa0191990:CDS 20.0%
!! ATTAATATTACACATTAGGT+TGG - chr2_1:7737605-7737624 None:intergenic 20.0%
!! TAACAAAAATAAAAACCTTG+TGG + chr2_1:7737678-7737697 Msa0191990:three_prime_UTR 20.0%
!!! ATCTCATATATGACTTGTTT+GGG - chr2_1:7731502-7731521 None:intergenic 25.0%
!!! AATCTCATATATGACTTGTT+TGG - chr2_1:7731503-7731522 None:intergenic 25.0%
!!! AAAAAAGAGTGTCTCTAAAA+TGG + chr2_1:7731689-7731708 Msa0191990:intron 25.0%
!! TTTTTACAGTTTCAAAAGGT+GGG - chr2_1:7731790-7731809 None:intergenic 25.0%
!! GATCTTTTTACAGTTTCAAA+AGG - chr2_1:7731794-7731813 None:intergenic 25.0%
!!! AACTCTAATTCTAGCTTTTA+TGG + chr2_1:7731902-7731921 Msa0191990:intron 25.0%
!!! ACTCTAATTCTAGCTTTTAT+GGG + chr2_1:7731903-7731922 Msa0191990:intron 25.0%
! TCAAAATAAGAGAATGAGTT+TGG - chr2_1:7731976-7731995 None:intergenic 25.0%
! AAGTTCAAAGTCATTTCATA+TGG + chr2_1:7732079-7732098 Msa0191990:intron 25.0%
!!! TTATATTGACTTACACACAT+AGG + chr2_1:7732324-7732343 Msa0191990:intron 25.0%
!!! CTTCAAAATTTTGTTGATTC+TGG + chr2_1:7732702-7732721 Msa0191990:intron 25.0%
!! AATTAAGTAACTTTTGCCAA+AGG - chr2_1:7732903-7732922 None:intergenic 25.0%
! AACTGAAAATTAAATGCCAA+AGG - chr2_1:7733251-7733270 None:intergenic 25.0%
!!! CATTTAATTTTCAGTTTCAG+TGG + chr2_1:7733255-7733274 Msa0191990:CDS 25.0%
!! ATTGTTGATTGCAATACATA+CGG + chr2_1:7733394-7733413 Msa0191990:intron 25.0%
!! ATGTTTCTATTAGCTTGAAA+AGG + chr2_1:7733430-7733449 Msa0191990:intron 25.0%
! TAGGAAATAATGGTATTGTT+AGG - chr2_1:7733521-7733540 None:intergenic 25.0%
! TTAAGTGTATTGTTTGATGA+CGG + chr2_1:7734000-7734019 Msa0191990:CDS 25.0%
!! TCAAGAAAATTAGGATTTTG+TGG - chr2_1:7734069-7734088 None:intergenic 25.0%
! ACATTTGAATTAGAACCTAA+AGG - chr2_1:7734258-7734277 None:intergenic 25.0%
! TTGATATCATATGGCAAAAT+GGG + chr2_1:7734529-7734548 Msa0191990:intron 25.0%
!!! TTGCATTATATTTTTCAGCT+AGG - chr2_1:7734884-7734903 None:intergenic 25.0%
!!! ACTTTTTCAATGAGAGAAAA+GGG + chr2_1:7735815-7735834 Msa0191990:CDS 25.0%
!! TAATTATGTTACTTGAGTGA+TGG - chr2_1:7735869-7735888 None:intergenic 25.0%
! TTTGTAGGTTAAGAAAGATT+GGG + chr2_1:7735933-7735952 Msa0191990:intron 25.0%
! TGGACATTTATTTACTCAAT+AGG - chr2_1:7736122-7736141 None:intergenic 25.0%
!!! AGCTTTCGAATGTATTTTTT+TGG + chr2_1:7736384-7736403 Msa0191990:intron 25.0%
!!! GCTTTCGAATGTATTTTTTT+GGG + chr2_1:7736385-7736404 Msa0191990:intron 25.0%
!! AAATCCTAATTTGTATGAGT+CGG + chr2_1:7736516-7736535 Msa0191990:CDS 25.0%
! GTCTTAGACTTATTTAATAG+AGG + chr2_1:7736892-7736911 Msa0191990:intron 25.0%
! TAATGTTAATTGGAAACCAA+GGG - chr2_1:7736969-7736988 None:intergenic 25.0%
! TGATGATCATTATTGTGTAA+TGG - chr2_1:7737075-7737094 None:intergenic 25.0%
! ATATTACTCTTATTCCACTT+GGG - chr2_1:7737200-7737219 None:intergenic 25.0%
! TATATTACTCTTATTCCACT+TGG - chr2_1:7737201-7737220 None:intergenic 25.0%
! TTTATATTTACTTGTCCTTG+AGG + chr2_1:7737231-7737250 Msa0191990:intron 25.0%
! AGAATCATTAAATATCCTCA+AGG - chr2_1:7737249-7737268 None:intergenic 25.0%
!! TCAACATGATTTTGAGAAGT+TGG - chr2_1:7731296-7731315 None:intergenic 30.0%
ATCATGTTGAACTTTGCATA+AGG + chr2_1:7731306-7731325 Msa0191990:intron 30.0%
TTACAGATTAAGCATGTGTT+TGG - chr2_1:7731360-7731379 None:intergenic 30.0%
AGTAATAAGCGTGTTTGATT+GGG - chr2_1:7731532-7731551 None:intergenic 30.0%
AAGTAATAAGCGTGTTTGAT+TGG - chr2_1:7731533-7731552 None:intergenic 30.0%
GTTATAACGAACAACAAGAA+TGG - chr2_1:7731607-7731626 None:intergenic 30.0%
!!! GTTTTGCAGTTTTGAGAAAT+GGG - chr2_1:7731648-7731667 None:intergenic 30.0%
!!! AGTTTTGCAGTTTTGAGAAA+TGG - chr2_1:7731649-7731668 None:intergenic 30.0%
AAAATGGTTCCATAGTTCAA+TGG + chr2_1:7731705-7731724 Msa0191990:intron 30.0%
! GTTGTGTTGTTAATTCAGAT+AGG - chr2_1:7731768-7731787 None:intergenic 30.0%
! CTTTTTACAGTTTCAAAAGG+TGG - chr2_1:7731791-7731810 None:intergenic 30.0%
! TTTAAAATCATGGGCTATCT+TGG + chr2_1:7731859-7731878 Msa0191990:intron 30.0%
TCATTTCATATGGATTCTGA+AGG + chr2_1:7732089-7732108 Msa0191990:intron 30.0%
!! TTACCAACTGACTTTTATGT+TGG + chr2_1:7732287-7732306 Msa0191990:intron 30.0%
! TTAAAAGCTCTTTCGACTTT+TGG + chr2_1:7732594-7732613 Msa0191990:CDS 30.0%
! TTGTTTTCCGATGATATTCT+TGG + chr2_1:7732673-7732692 Msa0191990:intron 30.0%
GTTGAAACCAAGAATATCAT+CGG - chr2_1:7732683-7732702 None:intergenic 30.0%
! AGTGTGGAATAACTTTAGAA+AGG - chr2_1:7732986-7733005 None:intergenic 30.0%
AGATAATGAAAAGATGCCAA+AGG - chr2_1:7733026-7733045 None:intergenic 30.0%
! CATCTTTTCATTATCTTAGC+CGG + chr2_1:7733030-7733049 Msa0191990:intron 30.0%
TTAAACATGTTTGAGGAAAC+CGG - chr2_1:7733052-7733071 None:intergenic 30.0%
! ACAAAGCTAGTTTCTTGAAA+CGG - chr2_1:7733294-7733313 None:intergenic 30.0%
GTATGTATTGCAATCAACAA+TGG - chr2_1:7733395-7733414 None:intergenic 30.0%
! TCTATTAGCTTGAAAAGGTA+AGG + chr2_1:7733435-7733454 Msa0191990:intron 30.0%
CTTCAAGACACAATAAAAGT+AGG - chr2_1:7733540-7733559 None:intergenic 30.0%
TAACTGTGACAAATTATGAC+AGG + chr2_1:7733583-7733602 Msa0191990:intron 30.0%
!!! GAGGATATTGATTTTCTCTA+TGG + chr2_1:7733682-7733701 Msa0191990:CDS 30.0%
!!! GATATTGATTTTCTCTATGG+TGG + chr2_1:7733685-7733704 Msa0191990:CDS 30.0%
GAGCATATTATCAAGTTTAG+AGG + chr2_1:7733717-7733736 Msa0191990:CDS 30.0%
AAGGTGATTGCGTAATTAAT+GGG + chr2_1:7733941-7733960 Msa0191990:CDS 30.0%
! TAAGTGTATTGTTTGATGAC+GGG + chr2_1:7734001-7734020 Msa0191990:CDS 30.0%
TGCGAATCTTCAAGAAAATT+AGG - chr2_1:7734078-7734097 None:intergenic 30.0%
TCTTCCTAATAAGCATAGTA+TGG + chr2_1:7734431-7734450 Msa0191990:intron 30.0%
GTTGATATCATATGGCAAAA+TGG + chr2_1:7734528-7734547 Msa0191990:intron 30.0%
TGATATCATATGGCAAAATG+GGG + chr2_1:7734530-7734549 Msa0191990:intron 30.0%
TGAGTATTTATGACATTCAC+AGG - chr2_1:7734591-7734610 None:intergenic 30.0%
ATAAGTCTAGCAATCAAAGA+TGG + chr2_1:7734661-7734680 Msa0191990:CDS 30.0%
TAAGTCTAGCAATCAAAGAT+GGG + chr2_1:7734662-7734681 Msa0191990:CDS 30.0%
CAAAACAACAGGAAAAATCT+GGG - chr2_1:7734821-7734840 None:intergenic 30.0%
!! ATATTTTTCAGCTAGGTAAC+CGG - chr2_1:7734877-7734896 None:intergenic 30.0%
AGTTATTCGGATAACTGATT+TGG - chr2_1:7734953-7734972 None:intergenic 30.0%
!! AATGTTACTGGTTTCAAAGA+TGG + chr2_1:7735005-7735024 Msa0191990:CDS 30.0%
CCAATCCGAAATATTTCATA+GGG - chr2_1:7735182-7735201 None:intergenic 30.0%
ACCAATCCGAAATATTTCAT+AGG - chr2_1:7735183-7735202 None:intergenic 30.0%
TGAAACAAATATTGAGGAGT+TGG + chr2_1:7735238-7735257 Msa0191990:CDS 30.0%
TAGTTGTCGAGATTAACATA+AGG + chr2_1:7735380-7735399 Msa0191990:intron 30.0%
!! GATAAATGTGAAAAGCATCA+AGG + chr2_1:7735469-7735488 Msa0191990:CDS 30.0%
! TTTTCTCGACAAGAAAGATT+TGG + chr2_1:7735636-7735655 Msa0191990:CDS 30.0%
AAGAAAGATTTGGAAACTTG+TGG + chr2_1:7735646-7735665 Msa0191990:CDS 30.0%
TAACTTCACAATATGGAGTT+GGG - chr2_1:7735720-7735739 None:intergenic 30.0%
ATAACTTCACAATATGGAGT+TGG - chr2_1:7735721-7735740 None:intergenic 30.0%
TCCATATTGTGAAGTTATTC+CGG + chr2_1:7735723-7735742 Msa0191990:CDS 30.0%
! CTTTTCTCTCATTGAAAAAG+TGG - chr2_1:7735816-7735835 None:intergenic 30.0%
!!! CACTTTTTCAATGAGAGAAA+AGG + chr2_1:7735814-7735833 Msa0191990:CDS 30.0%
CAATCTTTCTTAACCTACAA+AGG - chr2_1:7735934-7735953 None:intergenic 30.0%
CTTTGTAGGTTAAGAAAGAT+TGG + chr2_1:7735932-7735951 Msa0191990:intron 30.0%
AAAAACAATCCGTCATGATA+AGG - chr2_1:7736318-7736337 None:intergenic 30.0%
AAATACATTCGAAAGCTTAC+AGG - chr2_1:7736381-7736400 None:intergenic 30.0%
! AATCCTAATTTGTATGAGTC+GGG + chr2_1:7736517-7736536 Msa0191990:CDS 30.0%
! TGAAATAAGGCTTTTCGTTA+AGG - chr2_1:7736651-7736670 None:intergenic 30.0%
TATCCAGCTTCATTGAAATA+AGG - chr2_1:7736664-7736683 None:intergenic 30.0%
!! AGGTATAGTTATTTTACCTC+CGG - chr2_1:7736793-7736812 None:intergenic 30.0%
AGTTATTGTCAATGCTTTCT+AGG - chr2_1:7736864-7736883 None:intergenic 30.0%
CTAATGTTAATTGGAAACCA+AGG - chr2_1:7736970-7736989 None:intergenic 30.0%
TTGTGTAGTTGATTACACTA+AGG + chr2_1:7737023-7737042 Msa0191990:intron 30.0%
! CGACTTTATCCTTATCTTTT+CGG + chr2_1:7737168-7737187 Msa0191990:intron 30.0%
TATTACTCTTATTCCACTTG+GGG - chr2_1:7737199-7737218 None:intergenic 30.0%
! ACATATACTTGTTGCATGTA+AGG + chr2_1:7737372-7737391 Msa0191990:CDS 30.0%
! TTTTTGGATGTCAACAAACT+GGG - chr2_1:7737539-7737558 None:intergenic 30.0%
!! ATTTTTGGATGTCAACAAAC+TGG - chr2_1:7737540-7737559 None:intergenic 30.0%
! AGAAAAAGCACACTTGTCTA+TGG - chr2_1:7731184-7731203 None:intergenic 35.0%
AAAGCACACATAGGCTAAAT+AGG - chr2_1:7731207-7731226 None:intergenic 35.0%
TTTGAGAAATGGGAAAGGTA+TGG - chr2_1:7731638-7731657 None:intergenic 35.0%
AGAATGAGTTTGGAGAAGAA+GGG - chr2_1:7731966-7731985 None:intergenic 35.0%
CATCCAACATAAAAGTCAGT+TGG - chr2_1:7732293-7732312 None:intergenic 35.0%
CAGGTTCAAAAGAAATGATC+TGG + chr2_1:7732569-7732588 Msa0191990:intron 35.0%
CCAGATCTATCTGGTATTAA+GGG - chr2_1:7732742-7732761 None:intergenic 35.0%
ACCAGATCTATCTGGTATTA+AGG - chr2_1:7732743-7732762 None:intergenic 35.0%
GTTTGAAGATTCACCTGTAT+CGG + chr2_1:7732869-7732888 Msa0191990:intron 35.0%
TTTGAAGATTCACCTGTATC+GGG + chr2_1:7732870-7732889 Msa0191990:intron 35.0%
AGTTATTCCACACTTTCACT+AGG + chr2_1:7732992-7733011 Msa0191990:intron 35.0%
GGAGACTTTAAACATGTTTG+AGG - chr2_1:7733059-7733078 None:intergenic 35.0%
GGTTTGCAAAACTAGTATCA+AGG - chr2_1:7733120-7733139 None:intergenic 35.0%
! ATTTTCAGTTTCAGTGGTGA+AGG + chr2_1:7733261-7733280 Msa0191990:CDS 35.0%
TTTGTATCTGTGACAAGCAT+AGG + chr2_1:7733309-7733328 Msa0191990:CDS 35.0%
! TTGATAATATGCTCTGAGCT+TGG - chr2_1:7733711-7733730 None:intergenic 35.0%
! TCAAGTTTAGAGGAAAGCAT+CGG + chr2_1:7733727-7733746 Msa0191990:CDS 35.0%
TTCGAGAGAACATTTGCTTA+CGG + chr2_1:7733772-7733791 Msa0191990:CDS 35.0%
!! TGTTGACGTATTAGTGGATT+TGG + chr2_1:7733849-7733868 Msa0191990:intron 35.0%
GTGGATTTGGAAAACAATCA+AGG + chr2_1:7733862-7733881 Msa0191990:intron 35.0%
ACGAATCTTCAGAAGTTTCT+TGG - chr2_1:7733911-7733930 None:intergenic 35.0%
TCTGAAGATTCGTTCCATTT+CGG + chr2_1:7733918-7733937 Msa0191990:CDS 35.0%
GAAGGTGATTGCGTAATTAA+TGG + chr2_1:7733940-7733959 Msa0191990:CDS 35.0%
! TGACAGTAAGGTCAAGTTTT+TGG - chr2_1:7734307-7734326 None:intergenic 35.0%
ATGCGAAAAACATGACAGTA+AGG - chr2_1:7734319-7734338 None:intergenic 35.0%
!! TCTGTTCAACTTGTTCCTTT+TGG - chr2_1:7734386-7734405 None:intergenic 35.0%
CTAGCCATACTATGCTTATT+AGG - chr2_1:7734438-7734457 None:intergenic 35.0%
ATAGTATGGCTAGAGAATGT+AGG + chr2_1:7734445-7734464 Msa0191990:intron 35.0%
AATTGGGAAGATAAAGACCA+AGG + chr2_1:7734506-7734525 Msa0191990:intron 35.0%
!! AGACCAAGGTTGATATCATA+TGG + chr2_1:7734520-7734539 Msa0191990:intron 35.0%
TTGCCATATGATATCAACCT+TGG - chr2_1:7734526-7734545 None:intergenic 35.0%
CAAAATGGGGAACATACTTT+GGG + chr2_1:7734543-7734562 Msa0191990:intron 35.0%
TTCACAGGAACTAAATTCTG+CGG - chr2_1:7734576-7734595 None:intergenic 35.0%
! TTTTCCATCACAAACTGATG+AGG - chr2_1:7734624-7734643 None:intergenic 35.0%
! CATCAGTTTGTGATGGAAAA+AGG + chr2_1:7734624-7734643 Msa0191990:intron 35.0%
AAGTCTAGCAATCAAAGATG+GGG + chr2_1:7734663-7734682 Msa0191990:CDS 35.0%
CCAAAACAACAGGAAAAATC+TGG - chr2_1:7734822-7734841 None:intergenic 35.0%
!! CCAGATTTTTCCTGTTGTTT+TGG + chr2_1:7734819-7734838 Msa0191990:CDS 35.0%
! TTTTGGCGATATTGTGTTCA+AGG + chr2_1:7734836-7734855 Msa0191990:intron 35.0%
!! TATTTTTCAGCTAGGTAACC+GGG - chr2_1:7734876-7734895 None:intergenic 35.0%
TTCAATGAGTGACTTGAATG+TGG + chr2_1:7734905-7734924 Msa0191990:CDS 35.0%
!! ATTTGGTACAGGTTTTTCAG+AGG - chr2_1:7734936-7734955 None:intergenic 35.0%
AGTTATCCGAATAACTCTGT+AGG + chr2_1:7734957-7734976 Msa0191990:CDS 35.0%
CAGTTACCTACAGAGTTATT+CGG - chr2_1:7734966-7734985 None:intergenic 35.0%
GATGTTACTCGTGAAGTTTA+TGG + chr2_1:7735130-7735149 Msa0191990:intron 35.0%
TTGCGCCCTATGAAATATTT+CGG + chr2_1:7735174-7735193 Msa0191990:CDS 35.0%
CCCTATGAAATATTTCGGAT+TGG + chr2_1:7735179-7735198 Msa0191990:CDS 35.0%
! TGAATCTCACTTTGATGATC+AGG + chr2_1:7735420-7735439 Msa0191990:intron 35.0%
! GAATCTCACTTTGATGATCA+GGG + chr2_1:7735421-7735440 Msa0191990:intron 35.0%
AATGCTGGAGAAAAGTTCAA+TGG - chr2_1:7735527-7735546 None:intergenic 35.0%
! ATGATGTCATGCCAAGTTTT+TGG - chr2_1:7735564-7735583 None:intergenic 35.0%
! CTTGGCATGACATCATTTTA+TGG + chr2_1:7735568-7735587 Msa0191990:CDS 35.0%
CATTTCCCTCTTCAAATGTA+GGG - chr2_1:7735609-7735628 None:intergenic 35.0%
TCTTTCTTGTCGAGAAAATC+AGG - chr2_1:7735634-7735653 None:intergenic 35.0%
ACCGGAATAACTTCACAATA+TGG - chr2_1:7735727-7735746 None:intergenic 35.0%
TAAGAAAGATTGGGCGAAAA+AGG + chr2_1:7735942-7735961 Msa0191990:CDS 35.0%
!! GATAGCTGGTTGGTTTAATT+AGG - chr2_1:7736045-7736064 None:intergenic 35.0%
TATTTAGTGAGATAGCTGGT+TGG - chr2_1:7736055-7736074 None:intergenic 35.0%
TGCTTATTTAGTGAGATAGC+TGG - chr2_1:7736059-7736078 None:intergenic 35.0%
CCATTCTTTCTTCGAAAACA+CGG - chr2_1:7736257-7736276 None:intergenic 35.0%
! ATCCTAATTTGTATGAGTCG+GGG + chr2_1:7736518-7736537 Msa0191990:CDS 35.0%
!! AAGCCTTATTTCAATGAAGC+TGG + chr2_1:7736658-7736677 Msa0191990:CDS 35.0%
ATTTCTTAGTAGACCCAACA+TGG - chr2_1:7736767-7736786 None:intergenic 35.0%
!! TATAGTTATTTTACCTCCGG+CGG - chr2_1:7736790-7736809 None:intergenic 35.0%
CAGGAAGAATCAAAGTAAAG+AGG - chr2_1:7736813-7736832 None:intergenic 35.0%
TCTAGGAAATCATGTAGTCT+GGG - chr2_1:7736847-7736866 None:intergenic 35.0%
! TTCTAGGAAATCATGTAGTC+TGG - chr2_1:7736848-7736867 None:intergenic 35.0%
! ATTGTGATAGCAGCATTTTG+AGG + chr2_1:7737315-7737334 Msa0191990:intron 35.0%
!!! TCACTTTTTTCACCTCCAAT+AGG - chr2_1:7737415-7737434 None:intergenic 35.0%
AAGTGAGCATGAAAACCAAA+AGG + chr2_1:7737429-7737448 Msa0191990:CDS 35.0%
AGTGAGCATGAAAACCAAAA+GGG + chr2_1:7737430-7737449 Msa0191990:CDS 35.0%
! CTTCGTCGAGTTTTCATTTT+TGG - chr2_1:7737555-7737574 None:intergenic 35.0%
TTAGCCTATGTGTGCTTTGA+CGG + chr2_1:7731209-7731228 Msa0191990:intron 40.0%
AAGCGTGTTTGATTGGGATT+GGG - chr2_1:7731526-7731545 None:intergenic 40.0%
TAAGCGTGTTTGATTGGGAT+TGG - chr2_1:7731527-7731546 None:intergenic 40.0%
!!! GCAGTTTTGAGAAATGGGAA+AGG - chr2_1:7731643-7731662 None:intergenic 40.0%
ATGGTTCCATAGTTCAATGG+TGG + chr2_1:7731708-7731727 Msa0191990:intron 40.0%
GCTATCTTGGTTTCTTAGCT+TGG + chr2_1:7731872-7731891 Msa0191990:intron 40.0%
! TTTTATGGGACCAACCTTCT+TGG + chr2_1:7731917-7731936 Msa0191990:intron 40.0%
AGGGATTGTACCATTTGGTT+TGG - chr2_1:7731947-7731966 None:intergenic 40.0%
GAAGAAGGGATTGTACCATT+TGG - chr2_1:7731952-7731971 None:intergenic 40.0%
GAGAATGAGTTTGGAGAAGA+AGG - chr2_1:7731967-7731986 None:intergenic 40.0%
ATCACTTGTCTTCTTGTTGC+AGG + chr2_1:7732550-7732569 Msa0191990:intron 40.0%
! TTTCGACTTTTGGCAATTGC+AGG + chr2_1:7732604-7732623 Msa0191990:CDS 40.0%
!! ATTGCAGGCGTGTTTTGAAT+CGG + chr2_1:7732619-7732638 Msa0191990:CDS 40.0%
CCCTTAATACCAGATAGATC+TGG + chr2_1:7732739-7732758 Msa0191990:intron 40.0%
AACACTCTACCAGATCTATC+TGG - chr2_1:7732751-7732770 None:intergenic 40.0%
! TAGAGTGTTTAGCTTCATCG+TGG + chr2_1:7732762-7732781 Msa0191990:intron 40.0%
! AGAGTGTTTAGCTTCATCGT+GGG + chr2_1:7732763-7732782 Msa0191990:intron 40.0%
GATTTGTCCTAGTGAAAGTG+TGG - chr2_1:7733002-7733021 None:intergenic 40.0%
TCACTAGGACAAATCTCCTT+TGG + chr2_1:7733007-7733026 Msa0191990:intron 40.0%
CACAGAAAGAAACTAGAGAG+AGG - chr2_1:7733141-7733160 None:intergenic 40.0%
! CTCTCTCTAGTTTCTTTCTG+TGG + chr2_1:7733139-7733158 Msa0191990:intron 40.0%
TGGAAATTCCAGTGCAAACT+GGG + chr2_1:7733159-7733178 Msa0191990:intron 40.0%
TTACGACTCTGAATTGCCAA+AGG - chr2_1:7733192-7733211 None:intergenic 40.0%
ATTGCAATACATACGGACTC+TGG + chr2_1:7733401-7733420 Msa0191990:intron 40.0%
TATGACAGGCATAGAGTTGA+TGG + chr2_1:7733597-7733616 Msa0191990:intron 40.0%
! TCAGATGACTGATTCAGACT+GGG + chr2_1:7733624-7733643 Msa0191990:CDS 40.0%
CAAATGTTCTCTCGAATGAG+AGG - chr2_1:7733768-7733787 None:intergenic 40.0%
!! CGTAAGTGTTGACGTATTAG+TGG + chr2_1:7733843-7733862 Msa0191990:intron 40.0%
AAGATTCGTTCCATTTCGGA+AGG + chr2_1:7733922-7733941 Msa0191990:CDS 40.0%
TAAGTACGAGATCACTACCT+TGG + chr2_1:7734026-7734045 Msa0191990:CDS 40.0%
ACATAGCCATCTAGCTGATT+TGG - chr2_1:7734151-7734170 None:intergenic 40.0%
CTAGATGGCTATGTGACAAT+TGG + chr2_1:7734157-7734176 Msa0191990:intron 40.0%
TGGAGAGACAATCATGATGA+AGG + chr2_1:7734177-7734196 Msa0191990:intron 40.0%
TGAAGGAACTGTTTGTTCTG+TGG + chr2_1:7734194-7734213 Msa0191990:intron 40.0%
!! CAGGTTCGGTGTATGTTAAT+TGG + chr2_1:7734220-7734239 Msa0191990:intron 40.0%
!! GTATGTTAATTGGCTTGCCT+CGG + chr2_1:7734230-7734249 Msa0191990:CDS 40.0%
ATTAGAACCTAAAGGAACCG+AGG - chr2_1:7734250-7734269 None:intergenic 40.0%
!!! TTTTTGGAATCTTGCCAGCA+TGG - chr2_1:7734291-7734310 None:intergenic 40.0%
! CATGTTTTTCGCATGCAAAC+TGG + chr2_1:7734325-7734344 Msa0191990:CDS 40.0%
AAGAAACCTCAACTCTAGCA+TGG + chr2_1:7734470-7734489 Msa0191990:intron 40.0%
ATTCATCCATGCTAGAGTTG+AGG - chr2_1:7734479-7734498 None:intergenic 40.0%
GCAAAATGGGGAACATACTT+TGG + chr2_1:7734542-7734561 Msa0191990:intron 40.0%
!! AAGATGGGGTGTCATTCTAT+CGG + chr2_1:7734677-7734696 Msa0191990:CDS 40.0%
AGCATACGGTAAACGTACAA+TGG + chr2_1:7734712-7734731 Msa0191990:CDS 40.0%
!! AAATCATCTGGCTTGGATGT+GGG - chr2_1:7734747-7734766 None:intergenic 40.0%
CACAATATCGCCAAAACAAC+AGG - chr2_1:7734832-7734851 None:intergenic 40.0%
!! TCGGATAACTGATTTGGTAC+AGG - chr2_1:7734947-7734966 None:intergenic 40.0%
TAACATTGCCAATACAGGAC+AGG - chr2_1:7734992-7735011 None:intergenic 40.0%
! TCCTGTATTGGCAATGTTAC+TGG + chr2_1:7734993-7735012 Msa0191990:CDS 40.0%
ACCAGTAACATTGCCAATAC+AGG - chr2_1:7734997-7735016 None:intergenic 40.0%
TGGTTTCAAAGATGGTCATG+TGG + chr2_1:7735013-7735032 Msa0191990:CDS 40.0%
TTTCAAAGATGGTCATGTGG+AGG + chr2_1:7735016-7735035 Msa0191990:CDS 40.0%
! AAAAAGTTGAGGGCATACCT+TGG - chr2_1:7735066-7735085 None:intergenic 40.0%
AAAAGTTCAATGGCAGCTTG+AGG - chr2_1:7735517-7735536 None:intergenic 40.0%
! CTTTTCTCCAGCATTAAAGC+CGG + chr2_1:7735532-7735551 Msa0191990:CDS 40.0%
!! GCCAAGTTTTTGGAAAATGC+CGG - chr2_1:7735554-7735573 None:intergenic 40.0%
ACAGTCCCTACATTTGAAGA+GGG + chr2_1:7735601-7735620 Msa0191990:CDS 40.0%
GCATTTCCCTCTTCAAATGT+AGG - chr2_1:7735610-7735629 None:intergenic 40.0%
CCATTGCTGTCTAAAGAAAC+CGG - chr2_1:7735745-7735764 None:intergenic 40.0%
ATGGTTCAGATCAGTTGAAG+CGG + chr2_1:7735761-7735780 Msa0191990:CDS 40.0%
CTTAACCTACAAAGGAGCAA+TGG - chr2_1:7735926-7735945 None:intergenic 40.0%
! CGAAAAAGGTACAGCAAGAA+TGG + chr2_1:7735956-7735975 Msa0191990:CDS 40.0%
TCAATTAGCAGAAACTGCGA+TGG - chr2_1:7736195-7736214 None:intergenic 40.0%
! CCGTGTTTTCGAAGAAAGAA+TGG + chr2_1:7736254-7736273 Msa0191990:CDS 40.0%
AAGCTTACAGGTGGTTCATT+GGG - chr2_1:7736369-7736388 None:intergenic 40.0%
AAAGCTTACAGGTGGTTCAT+TGG - chr2_1:7736370-7736389 None:intergenic 40.0%
TACATTCGAAAGCTTACAGG+TGG - chr2_1:7736378-7736397 None:intergenic 40.0%
CCATCTGCAAGAGATTTCAA+AGG - chr2_1:7736468-7736487 None:intergenic 40.0%
!! CCTTTGAAATCTCTTGCAGA+TGG + chr2_1:7736465-7736484 Msa0191990:intron 40.0%
TTCCCCGACTCATACAAATT+AGG - chr2_1:7736523-7736542 None:intergenic 40.0%
GTTTGAGTCTCCTAAATACG+TGG + chr2_1:7736548-7736567 Msa0191990:CDS 40.0%
CTAGGAAATCATGTAGTCTG+GGG - chr2_1:7736846-7736865 None:intergenic 40.0%
!!! ATAGCAGCATTTTGAGGCAT+TGG + chr2_1:7737321-7737340 Msa0191990:intron 40.0%
GCATGTAAGGCATATCTTGA+AGG + chr2_1:7737385-7737404 Msa0191990:CDS 40.0%
TATCTTGAAGGAGCTCCTAT+TGG + chr2_1:7737397-7737416 Msa0191990:CDS 40.0%
AAAATGCCTCAGCAAGCTTA+GGG - chr2_1:7737495-7737514 None:intergenic 40.0%
!! TGCTGAGGCATTTTCTGATA+AGG + chr2_1:7737501-7737520 Msa0191990:CDS 40.0%
!! GCTGAGGCATTTTCTGATAA+GGG + chr2_1:7737502-7737521 Msa0191990:CDS 40.0%
AAACCTTGTGGTGTGTCATA+TGG + chr2_1:7737690-7737709 Msa0191990:three_prime_UTR 40.0%
GACGGTGGAAATTTCACGTT+AGG + chr2_1:7731227-7731246 Msa0191990:intron 45.0%
CATAAGGACGCGAGAATACA+AGG + chr2_1:7731322-7731341 Msa0191990:intron 45.0%
TCAACGCCACCATTGAACTA+TGG - chr2_1:7731717-7731736 None:intergenic 45.0%
!! TTCAATGGTGGCGTTGACTA+TGG + chr2_1:7731720-7731739 Msa0191990:intron 45.0%
!! TTTGGTTTGGACCACCAAGA+AGG - chr2_1:7731934-7731953 None:intergenic 45.0%
! TCTTGGTGGTCCAAACCAAA+TGG + chr2_1:7731934-7731953 Msa0191990:intron 45.0%
! GAGTGTTTAGCTTCATCGTG+GGG + chr2_1:7732764-7732783 Msa0191990:intron 45.0%
CTCGGAAGCTATATTGCCAA+AGG - chr2_1:7732797-7732816 None:intergenic 45.0%
AAAGGAGATTTGCCCGATAC+AGG - chr2_1:7732885-7732904 None:intergenic 45.0%
TGTATCGGGCAAATCTCCTT+TGG + chr2_1:7732884-7732903 Msa0191990:intron 45.0%
GTGGAAATTCCAGTGCAAAC+TGG + chr2_1:7733158-7733177 Msa0191990:intron 45.0%
CAAACTGGGCAAATCTCCTT+TGG + chr2_1:7733173-7733192 Msa0191990:CDS 45.0%
! CTCAGATGACTGATTCAGAC+TGG + chr2_1:7733623-7733642 Msa0191990:CDS 45.0%
!! GTTTAGAGGAAAGCATCGGT+AGG + chr2_1:7733731-7733750 Msa0191990:CDS 45.0%
TACGCAATCACCTTCCGAAA+TGG - chr2_1:7733935-7733954 None:intergenic 45.0%
! ATTGCGTAATTAATGGGCCG+TGG + chr2_1:7733947-7733966 Msa0191990:CDS 45.0%
TCGCAGTATCCATACTATCC+AGG + chr2_1:7734093-7734112 Msa0191990:intron 45.0%
CGCAGTATCCATACTATCCA+GGG + chr2_1:7734094-7734113 Msa0191990:intron 45.0%
CTGCTTCCAAATCAGCTAGA+TGG + chr2_1:7734142-7734161 Msa0191990:intron 45.0%
ACTGTTTGTTCTGTGGAAGC+AGG + chr2_1:7734201-7734220 Msa0191990:intron 45.0%
TTGTTCTGTGGAAGCAGGTT+CGG + chr2_1:7734206-7734225 Msa0191990:intron 45.0%
! TGTTCCTTTTGGTCTGCAAC+TGG - chr2_1:7734375-7734394 None:intergenic 45.0%
TTGGCCTCATCAGTTTGTGA+TGG + chr2_1:7734617-7734636 Msa0191990:intron 45.0%
! GGTCGATGCAAAAGAGCATA+CGG + chr2_1:7734698-7734717 Msa0191990:CDS 45.0%
!! CAAATCATCTGGCTTGGATG+TGG - chr2_1:7734748-7734767 None:intergenic 45.0%
CACATCCAAGCCAGATGATT+TGG + chr2_1:7734746-7734765 Msa0191990:CDS 45.0%
TGGCGATATTGTGTTCAAGG+CGG + chr2_1:7734839-7734858 Msa0191990:intron 45.0%
AACTGTCACCTGTCCTGTAT+TGG + chr2_1:7734981-7735000 Msa0191990:CDS 45.0%
ATGGTCATGTGGAGGTGAAA+TGG + chr2_1:7735024-7735043 Msa0191990:CDS 45.0%
TGGTCATGTGGAGGTGAAAT+GGG + chr2_1:7735025-7735044 Msa0191990:CDS 45.0%
!! GGCTACTGGTTTAATGACCA+AGG + chr2_1:7735046-7735065 Msa0191990:CDS 45.0%
TGACCAGAAGGGAAAGGTAA+GGG + chr2_1:7735295-7735314 Msa0191990:intron 45.0%
TTTCCCTTACCTTTCCCTTC+TGG - chr2_1:7735301-7735320 None:intergenic 45.0%
!! GAAAATGCCGGCTTTAATGC+TGG - chr2_1:7735542-7735561 None:intergenic 45.0%
! GCCGGCATTTTCCAAAAACT+TGG + chr2_1:7735550-7735569 Msa0191990:CDS 45.0%
CTCTTCAAATGTAGGGACTG+TGG - chr2_1:7735602-7735621 None:intergenic 45.0%
CACAGTCCCTACATTTGAAG+AGG + chr2_1:7735600-7735619 Msa0191990:CDS 45.0%
CCGGTTTCTTTAGACAGCAA+TGG + chr2_1:7735742-7735761 Msa0191990:CDS 45.0%
AAAAGGGTTGCCGATATCTC+AGG + chr2_1:7735831-7735850 Msa0191990:CDS 45.0%
CTACAAAGGAGCAATGGAGA+GGG - chr2_1:7735920-7735939 None:intergenic 45.0%
ATCCTGGAGAAAAACCTTCC+TGG + chr2_1:7735982-7736001 Msa0191990:CDS 45.0%
TAAAGTGTGAAGTACGCACC+AGG - chr2_1:7736003-7736022 None:intergenic 45.0%
TCAGGGACACCTTATCATGA+CGG + chr2_1:7736306-7736325 Msa0191990:CDS 45.0%
AGGTGGTTCATTGGGATACT+CGG - chr2_1:7736361-7736380 None:intergenic 45.0%
CAGATGGTGCACTACATTTC+TGG + chr2_1:7736481-7736500 Msa0191990:intron 45.0%
! ATGGTGCACTACATTTCTGG+CGG + chr2_1:7736484-7736503 Msa0191990:CDS 45.0%
AGTCTCCTAAATACGTGGAG+TGG + chr2_1:7736553-7736572 Msa0191990:CDS 45.0%
GAAGAACTGTGGAAGATCCA+GGG - chr2_1:7736600-7736619 None:intergenic 45.0%
TGAAGAACTGTGGAAGATCC+AGG - chr2_1:7736601-7736620 None:intergenic 45.0%
GAGAAGGACTTGAAGAACTG+TGG - chr2_1:7736611-7736630 None:intergenic 45.0%
GCTGGATATGACCAACAGAT+TGG + chr2_1:7736676-7736695 Msa0191990:CDS 45.0%
CTTCAGCTCTACCAATCTGT+TGG - chr2_1:7736690-7736709 None:intergenic 45.0%
CAACAGATTGGTAGAGCTGA+AGG + chr2_1:7736688-7736707 Msa0191990:CDS 45.0%
CTCACCTGCAAATCCATGTT+GGG + chr2_1:7736751-7736770 Msa0191990:CDS 45.0%
TAGACCCAACATGGATTTGC+AGG - chr2_1:7736758-7736777 None:intergenic 45.0%
! AGTCTGGGGTGTTATAGTAC+AGG - chr2_1:7736832-7736851 None:intergenic 45.0%
TACTCTTATTCCACTTGGGG+AGG - chr2_1:7737196-7737215 None:intergenic 45.0%
AACCAAAAGGGAACTTCGAC+AGG + chr2_1:7737442-7737461 Msa0191990:CDS 45.0%
! ATCCTGTCGAAGTTCCCTTT+TGG - chr2_1:7737447-7737466 None:intergenic 45.0%
GAAAATGCCTCAGCAAGCTT+AGG - chr2_1:7737496-7737515 None:intergenic 45.0%
CGAAGTTGAGTTCACCATCA+AGG + chr2_1:7737570-7737589 Msa0191990:three_prime_UTR 45.0%
GAGTTCACCATCAAGGTTTC+TGG + chr2_1:7737577-7737596 Msa0191990:three_prime_UTR 45.0%
GTTGGAACCAGAAACCTTGA+TGG - chr2_1:7737587-7737606 None:intergenic 45.0%
AAGCCATATGACACACCACA+AGG - chr2_1:7737696-7737715 None:intergenic 45.0%
!! TATTTATTTATATAATCTAA+AGG + chr2_1:7732124-7732143 Msa0191990:intron 5.0%
!!! ATATATTTTATAAAATAGTT+TGG + chr2_1:7732203-7732222 Msa0191990:intron 5.0%
TCCACCGTCAAAGCACACAT+AGG - chr2_1:7731216-7731235 None:intergenic 50.0%
!! AATGGTGGCGTTGACTATGG+TGG + chr2_1:7731723-7731742 Msa0191990:intron 50.0%
!! GCGTTGACTATGGTGGAACT+GGG + chr2_1:7731730-7731749 Msa0191990:intron 50.0%
TATGGGACCAACCTTCTTGG+TGG + chr2_1:7731920-7731939 Msa0191990:intron 50.0%
GTTTGGACCACCAAGAAGGT+TGG - chr2_1:7731930-7731949 None:intergenic 50.0%
ACTGCACACAACACAGAGCA+AGG - chr2_1:7732260-7732279 None:intergenic 50.0%
TTGCTCTGTGTTGTGTGCAG+TGG + chr2_1:7732259-7732278 Msa0191990:intron 50.0%
ATCGTGGGGCAAATCTCCTT+TGG + chr2_1:7732778-7732797 Msa0191990:intron 50.0%
TAGCTTCCGAGTCACGATCT+TGG + chr2_1:7732806-7732825 Msa0191990:intron 50.0%
CCTCTTCCAAGATCGTGACT+CGG - chr2_1:7732815-7732834 None:intergenic 50.0%
GAGATTTGCCCAGTTTGCAC+TGG - chr2_1:7733170-7733189 None:intergenic 50.0%
TCCAGTTATCCCTGTCCTGT+CGG + chr2_1:7733217-7733236 Msa0191990:CDS 50.0%
TGCTCCTTATCAGACCCATC+TGG + chr2_1:7733805-7733824 Msa0191990:CDS 50.0%
CTGTCCAGATGGGTCTGATA+AGG - chr2_1:7733812-7733831 None:intergenic 50.0%
ATCAGACCCATCTGGACAGA+TGG + chr2_1:7733813-7733832 Msa0191990:CDS 50.0%
TCAGACCCATCTGGACAGAT+GGG + chr2_1:7733814-7733833 Msa0191990:CDS 50.0%
! GTAATTAATGGGCCGTGGCT+TGG + chr2_1:7733952-7733971 Msa0191990:CDS 50.0%
CTTTGAACCTGACCAAGCCA+CGG - chr2_1:7733967-7733986 None:intergenic 50.0%
!! GTGGCTTGGTCAGGTTCAAA+GGG + chr2_1:7733966-7733985 Msa0191990:CDS 50.0%
ACTCTCTGCCCTGGATAGTA+TGG - chr2_1:7734105-7734124 None:intergenic 50.0%
TTAACCTTCACTCTCTGCCC+TGG - chr2_1:7734114-7734133 None:intergenic 50.0%
!! AGCTGATTTGGAAGCAGTCG+AGG - chr2_1:7734139-7734158 None:intergenic 50.0%
ATGTGAACACTCCTCCATGC+TGG + chr2_1:7734274-7734293 Msa0191990:CDS 50.0%
TTGGAATCTTGCCAGCATGG+AGG - chr2_1:7734288-7734307 None:intergenic 50.0%
TCGCATGCAAACTGGCAACT+TGG + chr2_1:7734333-7734352 Msa0191990:CDS 50.0%
! CAAACTGGCAACTTGGTGAC+TGG + chr2_1:7734340-7734359 Msa0191990:CDS 50.0%
GCTTCCAGTTGCAGACCAAA+AGG + chr2_1:7734368-7734387 Msa0191990:CDS 50.0%
! TCCAAGCCAGATGATTTGGC+TGG + chr2_1:7734750-7734769 Msa0191990:CDS 50.0%
TCCAGCCAAATCATCTGGCT+TGG - chr2_1:7734754-7734773 None:intergenic 50.0%
GGTTCTCCAGCCAAATCATC+TGG - chr2_1:7734759-7734778 None:intergenic 50.0%
GCACTCACAGTTTCTGTCGT+TGG - chr2_1:7734780-7734799 None:intergenic 50.0%
TGGGTGCTCAACAAGTTCGT+AGG - chr2_1:7734802-7734821 None:intergenic 50.0%
AAGTCTGCCTTCTGACCAGA+AGG + chr2_1:7735283-7735302 Msa0191990:CDS 50.0%
AGTCTGCCTTCTGACCAGAA+GGG + chr2_1:7735284-7735303 Msa0191990:CDS 50.0%
ACCTTTCCCTTCTGGTCAGA+AGG - chr2_1:7735293-7735312 None:intergenic 50.0%
CTGACCAGAAGGGAAAGGTA+AGG + chr2_1:7735294-7735313 Msa0191990:intron 50.0%
TTCAATGGCAGCTTGAGGCA+GGG - chr2_1:7735512-7735531 None:intergenic 50.0%
CAGGATGTGAATCGGTCTCA+GGG - chr2_1:7735672-7735691 None:intergenic 50.0%
CCTACAAAGGAGCAATGGAG+AGG - chr2_1:7735921-7735940 None:intergenic 50.0%
CCTCTCCATTGCTCCTTTGT+AGG + chr2_1:7735918-7735937 Msa0191990:intron 50.0%
! ACAGCAAGAATGGAGCATCC+TGG + chr2_1:7735966-7735985 Msa0191990:CDS 50.0%
! CACCAGGAAGGTTTTTCTCC+AGG - chr2_1:7735987-7736006 None:intergenic 50.0%
GTTCATTGGGATACTCGGGA+GGG - chr2_1:7736356-7736375 None:intergenic 50.0%
GGTGGTTCATTGGGATACTC+GGG - chr2_1:7736360-7736379 None:intergenic 50.0%
CGGTACCACTCCACGTATTT+AGG - chr2_1:7736561-7736580 None:intergenic 50.0%
TCAAGTCCTTCTCTCTCTGC+AGG + chr2_1:7736618-7736637 Msa0191990:intron 50.0%
ACATGGATTTGCAGGTGAGG+AGG - chr2_1:7736750-7736769 None:intergenic 50.0%
CCAACATGGATTTGCAGGTG+AGG - chr2_1:7736753-7736772 None:intergenic 50.0%
CCTCACCTGCAAATCCATGT+TGG + chr2_1:7736750-7736769 Msa0191990:CDS 50.0%
GGGTCTACTAAGAAATCCGC+CGG + chr2_1:7736771-7736790 Msa0191990:CDS 50.0%
TCTACTAAGAAATCCGCCGG+AGG + chr2_1:7736774-7736793 Msa0191990:CDS 50.0%
TGAGATGTGTGCATGACCCT+TGG + chr2_1:7736950-7736969 Msa0191990:intron 50.0%
GGGGAGGATCCGAAAAGATA+AGG - chr2_1:7737180-7737199 None:intergenic 50.0%
!!! GCAGCATTTTGAGGCATTGG+TGG + chr2_1:7737324-7737343 Msa0191990:intron 50.0%
CTTGAAGGAGCTCCTATTGG+AGG + chr2_1:7737400-7737419 Msa0191990:CDS 50.0%
GCCTATGTGTGCTTTGACGG+TGG + chr2_1:7731212-7731231 Msa0191990:intron 55.0%
!! GGCGTTGACTATGGTGGAAC+TGG + chr2_1:7731729-7731748 Msa0191990:intron 55.0%
CCGAGTCACGATCTTGGAAG+AGG + chr2_1:7732812-7732831 Msa0191990:intron 55.0%
CCAGTTATCCCTGTCCTGTC+GGG + chr2_1:7733218-7733237 Msa0191990:CDS 55.0%
GAGATTTGCCCGACAGGACA+GGG - chr2_1:7733229-7733248 None:intergenic 55.0%
CCAAAGGAGATTTGCCCGAC+AGG - chr2_1:7733235-7733254 None:intergenic 55.0%
CCTGTCGGGCAAATCTCCTT+TGG + chr2_1:7733232-7733251 Msa0191990:CDS 55.0%
GAGTCTTCCAGTGAGAGCAG+CGG + chr2_1:7733646-7733665 Msa0191990:CDS 55.0%
CAGCGGTAGTGACGATCAAG+AGG + chr2_1:7733663-7733682 Msa0191990:CDS 55.0%
CAGACCCATCTGGACAGATG+GGG + chr2_1:7733815-7733834 Msa0191990:CDS 55.0%
!! CGTGGCTTGGTCAGGTTCAA+AGG + chr2_1:7733965-7733984 Msa0191990:CDS 55.0%
GCTTGGTCAGGTTCAAAGGG+TGG + chr2_1:7733969-7733988 Msa0191990:CDS 55.0%
TGGTCAGGTTCAAAGGGTGG+TGG + chr2_1:7733972-7733991 Msa0191990:CDS 55.0%
CTATCCAGGGCAGAGAGTGA+AGG + chr2_1:7734107-7734126 Msa0191990:intron 55.0%
! TGGCTTGCCTCGGTTCCTTT+AGG + chr2_1:7734240-7734259 Msa0191990:CDS 55.0%
AAGGCGGCTCAAAAACAGCC+CGG + chr2_1:7734855-7734874 Msa0191990:intron 55.0%
!! GTGGAGGTGAAATGGGCTAC+TGG + chr2_1:7735032-7735051 Msa0191990:CDS 55.0%
GCCTTCTGACCAGAAGGGAA+AGG + chr2_1:7735289-7735308 Msa0191990:CDS 55.0%
GTTCAATGGCAGCTTGAGGC+AGG - chr2_1:7735513-7735532 None:intergenic 55.0%
GCAGGATGTGAATCGGTCTC+AGG - chr2_1:7735673-7735692 None:intergenic 55.0%
CGTGCTCGCAGGATGTGAAT+CGG - chr2_1:7735680-7735699 None:intergenic 55.0%
GTGTGAAGTACGCACCAGGA+AGG - chr2_1:7735999-7736018 None:intergenic 55.0%
GGTTCATTGGGATACTCGGG+AGG - chr2_1:7736357-7736376 None:intergenic 55.0%
AGGGTTCCACACTTCAGTCG+CGG - chr2_1:7736581-7736600 None:intergenic 55.0%
CAAGAGCCTGCAGAGAGAGA+AGG - chr2_1:7736627-7736646 None:intergenic 55.0%
! CTTTTCGGATCCTCCCCAAG+TGG + chr2_1:7737183-7737202 Msa0191990:intron 55.0%
!! ACTCCTCCCTAAGCTTGCTG+AGG + chr2_1:7737486-7737505 Msa0191990:CDS 55.0%
ATGCCTCAGCAAGCTTAGGG+AGG - chr2_1:7737492-7737511 None:intergenic 55.0%
! GACTATGGTGGAACTGGGCG+TGG + chr2_1:7731735-7731754 Msa0191990:intron 60.0%
CCCGACAGGACAGGGATAAC+TGG - chr2_1:7733221-7733240 None:intergenic 60.0%
GGAGATTTGCCCGACAGGAC+AGG - chr2_1:7733230-7733249 None:intergenic 60.0%
GTCACTACCGCTGCTCTCAC+TGG - chr2_1:7733656-7733675 None:intergenic 60.0%
ACCCATCTGGACAGATGGGG+AGG + chr2_1:7733818-7733837 Msa0191990:CDS 60.0%
CCCTCCCCATCTGTCCAGAT+GGG - chr2_1:7733822-7733841 None:intergenic 60.0%
CCCATCTGGACAGATGGGGA+GGG + chr2_1:7733819-7733838 Msa0191990:CDS 60.0%
ACCCTCCCCATCTGTCCAGA+TGG - chr2_1:7733823-7733842 None:intergenic 60.0%
!! TAATGGGCCGTGGCTTGGTC+AGG + chr2_1:7733957-7733976 Msa0191990:CDS 60.0%
GTAGACTGCAACGTGCTCGC+AGG - chr2_1:7735691-7735710 None:intergenic 60.0%
CTCATGCGAGCAGCCATCGT+TGG + chr2_1:7736279-7736298 Msa0191990:CDS 60.0%
CAGCCATCGTTGGTGCGTCA+GGG + chr2_1:7736289-7736308 Msa0191990:CDS 60.0%
TGTCCCTGACGCACCAACGA+TGG - chr2_1:7736295-7736314 None:intergenic 60.0%
GTGGTACCGCGACTGAAGTG+TGG + chr2_1:7736572-7736591 Msa0191990:CDS 60.0%
GCGACTGAAGTGTGGAACCC+TGG + chr2_1:7736580-7736599 Msa0191990:CDS 60.0%
GCAGCCATCGTTGGTGCGTC+AGG + chr2_1:7736288-7736307 Msa0191990:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 7731157 7737767 7731157 ID=Msa0191990;Name=Msa0191990
chr2_1 mRNA 7731157 7737767 7731157 ID=Msa0191990-mRNA-1;Parent=Msa0191990;Name=Msa0191990-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.4|0.31|0.93|0.53|0.5|16|206|888
chr2_1 exon 7731157 7731164 7731157 ID=Msa0191990-mRNA-1:exon:3560;Parent=Msa0191990-mRNA-1
chr2_1 exon 7732572 7732659 7732572 ID=Msa0191990-mRNA-1:exon:3561;Parent=Msa0191990-mRNA-1
chr2_1 exon 7733171 7733330 7733171 ID=Msa0191990-mRNA-1:exon:3562;Parent=Msa0191990-mRNA-1
chr2_1 exon 7733605 7733847 7733605 ID=Msa0191990-mRNA-1:exon:3563;Parent=Msa0191990-mRNA-1
chr2_1 exon 7733863 7734097 7733863 ID=Msa0191990-mRNA-1:exon:3564;Parent=Msa0191990-mRNA-1
chr2_1 exon 7734115 7734128 7734115 ID=Msa0191990-mRNA-1:exon:3565;Parent=Msa0191990-mRNA-1
chr2_1 exon 7734223 7734447 7734223 ID=Msa0191990-mRNA-1:exon:3566;Parent=Msa0191990-mRNA-1
chr2_1 exon 7734646 7734848 7734646 ID=Msa0191990-mRNA-1:exon:3567;Parent=Msa0191990-mRNA-1
chr2_1 exon 7734858 7735067 7734858 ID=Msa0191990-mRNA-1:exon:3568;Parent=Msa0191990-mRNA-1
chr2_1 exon 7735173 7735310 7735173 ID=Msa0191990-mRNA-1:exon:3569;Parent=Msa0191990-mRNA-1
chr2_1 exon 7735442 7735852 7735442 ID=Msa0191990-mRNA-1:exon:3570;Parent=Msa0191990-mRNA-1
chr2_1 exon 7735940 7736003 7735940 ID=Msa0191990-mRNA-1:exon:3571;Parent=Msa0191990-mRNA-1
chr2_1 exon 7736241 7736380 7736241 ID=Msa0191990-mRNA-1:exon:3572;Parent=Msa0191990-mRNA-1
chr2_1 exon 7736484 7736621 7736484 ID=Msa0191990-mRNA-1:exon:3573;Parent=Msa0191990-mRNA-1
chr2_1 exon 7736640 7736795 7736640 ID=Msa0191990-mRNA-1:exon:3574;Parent=Msa0191990-mRNA-1
chr2_1 exon 7737328 7737767 7737328 ID=Msa0191990-mRNA-1:exon:3575;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7731157 7731164 7731157 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7732572 7732659 7732572 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7733171 7733330 7733171 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7733605 7733847 7733605 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7733863 7734097 7733863 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7734115 7734128 7734115 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7734223 7734447 7734223 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7734646 7734848 7734646 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7734858 7735067 7734858 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7735173 7735310 7735173 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7735442 7735852 7735442 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7735940 7736003 7735940 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7736241 7736380 7736241 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7736484 7736621 7736484 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7736640 7736795 7736640 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 CDS 7737328 7737561 7737328 ID=Msa0191990-mRNA-1:cds;Parent=Msa0191990-mRNA-1
chr2_1 three_prime_UTR 7737562 7737767 7737562 ID=Msa0191990-mRNA-1:three_prime_utr;Parent=Msa0191990-mRNA-1
Gene Sequence

>Msa0191990

ATGCAGAAGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGGCGTGTTTTGAATCGGACTTTGTTCTGTCAGAAATGCAAACTGGGCAAATCTCCTTTGGCAATTCAGAGTCGTAATAGACTCCAGTTATCCCTGTCCTGTCGGGCAAATCTCCTTTGGCATTTAATTTTCAGTTTCAGTGGTGAAGGTATTCTTCCGTTTCAAGAAACTAGCTTTGTATCTGTGACAAGCATAGGCATAGAGTTGATGGAAGCTCAGATGACTGATTCAGACTGGGAGTCTTCCAGTGAGAGCAGCGGTAGTGACGATCAAGAGGATATTGATTTTCTCTATGGTGGCCAAGCTCAGAGCATATTATCAAGTTTAGAGGAAAGCATCGGTAGGATAGACGATTTCCTCTCATTCGAGAGAACATTTGCTTACGGCGATGTTGTGTGCTCCTTATCAGACCCATCTGGACAGATGGGGAGGGTCGTAATGGATTTGGAAAACAATCAAGGAAATGTGTTAAAAAATGTGAACTCCAAGAAACTTCTGAAGATTCGTTCCATTTCGGAAGGTGATTGCGTAATTAATGGGCCGTGGCTTGGTCAGGTTCAAAGGGTGGTGGACAGATTAAGTGTATTGTTTGATGACGGGACTAAGTACGAGATCACTACCTTGGAAAATGATAAGATTTTACCACAAAATCCTAATTTTCTTGAAGATTCGCAGGCAGAGAGTGAAGGTTCGGTGTATGTTAATTGGCTTGCCTCGGTTCCTTTAGGTTCTAATTCAAATGTGAACACTCCTCCATGCTGGCAAGATTCCAAAAACTTGACCTTACTGTCATGTTTTTCGCATGCAAACTGGCAACTTGGTGACTGGTGTATGCTTCCAGTTGCAGACCAAAAGGAACAAGTTGAACAGATGATTCGAGATTCATCAGATAGTTATCTTCCTAATAAGCATAGTACTTCTGATGATGATAAGTCTAGCAATCAAAGATGGGGTGTCATTCTATCGGTCGATGCAAAAGAGCATACGGTAAACGTACAATGGAGAACAGCTCCCACATCCAAGCCAGATGATTTGGCTGGAGAACCAACGACAGAAACTGTGAGTGCCTACGAACTTGTTGAGCACCCAGATTTTTCCTGTTGTTTTGGCGATATTGCGGCTCAAAAACAGCCCGGTTACCTAGCTGAAAAATATAATGCAAATTCAATGAGTGACTTGAATGTGGAAGCTCCTCTGAAAAACCTGTACCAAATCAGTTATCCGAATAACTCTGTAGGTAACTGTCACCTGTCCTGTATTGGCAATGTTACTGGTTTCAAAGATGGTCATGTGGAGGTGAAATGGGCTACTGGTTTAATGACCAAGGTTGCGCCCTATGAAATATTTCGGATTGGTAAACATGAAGCTTCGACTGTAACTCCTGTTTCTTATGAAACAAATATTGAGGAGTTGGTTGAAGAGATTACTGAACATGTAAGTCTGCCTTCTGACCAGAAGGGAAAGGGCTTGTCAGATTGTAACAGTGATAGAGATAAATGTGAAAAGCATCAAGGAGAGAGTAGTTCGTTTTCCCTGCCTCAAGCTGCCATTGAACTTTTCTCCAGCATTAAAGCCGGCATTTTCCAAAAACTTGGCATGACATCATTTTATGGAGCTGTTTCCACAGTCCCTACATTTGAAGAGGGAAATGCACCTGATTTTCTCGACAAGAAAGATTTGGAAACTTGTGGCCCTGAGACCGATTCACATCCTGCGAGCACGTTGCAGTCTACTGAAAACCCAACTCCATATTGTGAAGTTATTCCGGTTTCTTTAGACAGCAATGGTTCAGATCAGTTGAAGCGGTTTGATGTAATTGATACTTGTTCAGATCACCACTTTTTCAATGAGAGAAAAGGGTTGCCGATATCTCAGGTTAAGAAAGATTGGGCGAAAAAGGTACAGCAAGAATGGAGCATCCTGGAGAAAAACCTTCCTGAAACTATTTATGTCCGTGTTTTCGAAGAAAGAATGGATCTCATGCGAGCAGCCATCGTTGGTGCGTCAGGGACACCTTATCATGACGGATTGTTTTTCTTCGATATATGTTTCCCTCCCGAGTATCCCAATGAACCACCTATGGTGCACTACATTTCTGGCGGATTAAGAATAAATCCTAATTTGTATGAGTCGGGGAAAGTGTGTTTGAGTCTCCTAAATACGTGGAGTGGTACCGCGACTGAAGTGTGGAACCCTGGATCTTCCACAGTTCTTCAAGCTCTTGTCCTTAACGAAAAGCCTTATTTCAATGAAGCTGGATATGACCAACAGATTGGTAGAGCTGAAGGAGAGAAAAATTCTGTGAGTTACAATGAGAATGCTTTCCTCCTCACCTGCAAATCCATGTTGGGTCTACTAAGAAATCCGCCGGAGCATTTTGAGGCATTGGTGGAAGAACACTTTCGACAACGCTCAAAACATATACTTGTTGCATGTAAGGCATATCTTGAAGGAGCTCCTATTGGAGGTGAAAAAAGTGAGCATGAAAACCAAAAGGGAACTTCGACAGGATTTAAAATTATGTTTGGTAAACTCCTCCCTAAGCTTGCTGAGGCATTTTCTGATAAGGGAATTGATTGCTCCCAGTTTGTTGACATCCAAAAATGA
Protein sequence

>Msa0191990

MQKFKRNDLVLKALSTFGNCRRVLNRTLFCQKCKLGKSPLAIQSRNRLQLSLSCRANLLWHLIFSFSGEGILPFQETSFVSVTSIGIELMEAQMTDSDWESSSESSGSDDQEDIDFLYGGQAQSILSSLEESIGRIDDFLSFERTFAYGDVVCSLSDPSGQMGRVVMDLENNQGNVLKNVNSKKLLKIRSISEGDCVINGPWLGQVQRVVDRLSVLFDDGTKYEITTLENDKILPQNPNFLEDSQAESEGSVYVNWLASVPLGSNSNVNTPPCWQDSKNLTLLSCFSHANWQLGDWCMLPVADQKEQVEQMIRDSSDSYLPNKHSTSDDDKSSNQRWGVILSVDAKEHTVNVQWRTAPTSKPDDLAGEPTTETVSAYELVEHPDFSCCFGDIAAQKQPGYLAEKYNANSMSDLNVEAPLKNLYQISYPNNSVGNCHLSCIGNVTGFKDGHVEVKWATGLMTKVAPYEIFRIGKHEASTVTPVSYETNIEELVEEITEHVSLPSDQKGKGLSDCNSDRDKCEKHQGESSSFSLPQAAIELFSSIKAGIFQKLGMTSFYGAVSTVPTFEEGNAPDFLDKKDLETCGPETDSHPASTLQSTENPTPYCEVIPVSLDSNGSDQLKRFDVIDTCSDHHFFNERKGLPISQVKKDWAKKVQQEWSILEKNLPETIYVRVFEERMDLMRAAIVGASGTPYHDGLFFFDICFPPEYPNEPPMVHYISGGLRINPNLYESGKVCLSLLNTWSGTATEVWNPGSSTVLQALVLNEKPYFNEAGYDQQIGRAEGEKNSVSYNENAFLLTCKSMLGLLRNPPEHFEALVEEHFRQRSKHILVACKAYLEGAPIGGEKSEHENQKGTSTGFKIMFGKLLPKLAEAFSDKGIDCSQFVDIQK*