AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0190010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190010 MtrunA17_Chr2g0279581 84.768 302 8 1 1 264 1 302 0.0 517
Msa0190010 MtrunA17_Chr5g0427341 41.311 305 125 8 7 263 10 308 2.30e-66 208
Msa0190010 MtrunA17_Chr5g0413551 38.579 197 80 2 89 244 52 248 4.70e-41 142
Msa0190010 MtrunA17_Chr8g0365441 32.342 269 120 5 18 245 1 248 2.46e-40 140
Msa0190010 MtrunA17_Chr6g0450641 34.413 247 109 4 39 244 89 323 5.90e-38 135
Msa0190010 MtrunA17_Chr3g0117661 38.220 191 77 3 91 240 55 245 3.32e-35 127
Msa0190010 MtrunA17_Chr3g0117691 47.934 121 61 1 122 240 125 245 3.44e-33 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190010 AT4G33580.3 47.426 272 93 6 37 264 36 301 9.74e-76 233
Msa0190010 AT4G33580.1 47.426 272 93 6 37 264 36 301 9.74e-76 233
Msa0190010 AT4G33580.2 46.886 273 94 7 37 264 36 302 2.87e-73 226
Msa0190010 AT1G58180.7 41.206 199 77 2 84 242 23 221 1.17e-50 166
Msa0190010 AT1G58180.3 41.206 199 77 2 84 242 23 221 1.17e-50 166
Msa0190010 AT1G58180.6 41.206 199 77 2 84 242 23 221 1.17e-50 166
Msa0190010 AT1G58180.2 41.206 199 77 2 84 242 74 272 2.08e-50 167
Msa0190010 AT1G58180.4 41.206 199 77 2 84 242 74 272 2.08e-50 167
Msa0190010 AT1G23730.2 37.788 217 93 2 73 247 36 252 2.52e-44 150
Msa0190010 AT1G23730.1 37.788 217 93 2 73 247 36 252 2.52e-44 150
Msa0190010 AT1G70410.3 38.140 215 91 3 75 247 38 252 5.97e-42 144
Msa0190010 AT1G70410.1 38.140 215 91 3 75 247 38 252 5.97e-42 144
Msa0190010 AT1G70410.2 38.140 215 91 3 75 247 60 274 1.53e-41 144
Msa0190010 AT1G58180.1 39.326 178 68 2 84 221 74 251 3.87e-40 140
Msa0190010 AT5G14740.9 38.614 202 83 3 84 244 50 251 8.46e-37 131
Msa0190010 AT5G14740.8 38.614 202 83 3 84 244 50 251 8.46e-37 131
Msa0190010 AT5G14740.7 38.614 202 83 3 84 244 50 251 8.46e-37 131
Msa0190010 AT5G14740.2 38.614 202 83 3 84 244 50 251 8.46e-37 131
Msa0190010 AT5G14740.6 38.614 202 83 3 84 244 50 251 8.46e-37 131
Msa0190010 AT5G14740.1 38.614 202 83 3 84 244 122 323 4.32e-36 131
Msa0190010 AT3G01500.4 36.634 202 87 3 84 244 50 251 1.75e-34 125
Msa0190010 AT3G01500.1 36.634 202 87 3 84 244 50 251 2.83e-34 125
Msa0190010 AT3G01500.3 36.634 202 87 3 84 244 127 328 3.42e-34 126
Msa0190010 AT3G01500.2 36.634 202 87 3 84 244 127 328 6.34e-34 125
Msa0190010 AT5G14740.4 38.119 202 83 4 84 244 122 322 1.35e-33 124
Msa0190010 AT5G14740.3 38.119 202 83 4 84 244 122 322 5.08e-33 123
Msa0190010 AT1G58180.5 38.710 155 55 2 84 198 74 228 4.05e-30 114
Msa0190010 AT5G14740.5 33.974 156 62 3 84 198 122 277 1.47e-15 75.5

Find 79 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTCAGTGTTCTTCTTTAA+AGG 0.218106 2_1:-5451664 Msa0190010:CDS
TTCTTCTTTAAAGGCTTCTA+TGG 0.218623 2_1:-5451655 Msa0190010:CDS
GCAAGACTTTCAAACTGTTC+AGG 0.276705 2_1:+5451401 None:intergenic
AACTCAAACTCAAATGAAAA+TGG 0.297130 2_1:+5452632 None:intergenic
GAAATGGACATTGGACTATA+GGG 0.318375 2_1:-5449667 Msa0190010:CDS
ATCAAAAGTTGGGTTATTCA+TGG 0.325701 2_1:-5450058 Msa0190010:CDS
ACACACACGTGAAATGGTTT+GGG 0.331034 2_1:+5449446 None:intergenic
ATTTGCAGTAAACACTCTTC+TGG 0.333907 2_1:-5450680 Msa0190010:intron
CGTGTAGCTTTATCAAAAGT+TGG 0.339113 2_1:-5450069 Msa0190010:intron
AGAAATGGACATTGGACTAT+AGG 0.342791 2_1:-5449668 Msa0190010:CDS
TTAATTGTTCATTTGAGAAA+TGG 0.357926 2_1:-5449683 Msa0190010:CDS
CTCTGTTCCTGCGCAAATTA+CGG 0.359512 2_1:-5452431 Msa0190010:CDS
GTTGGTAAACAACATGGAAT+AGG 0.359886 2_1:+5452788 None:intergenic
AGACCCATTTGACAGCATTA+AGG 0.363149 2_1:-5452396 Msa0190010:intron
TACCCTTGATGGGTTATAAC+TGG 0.371016 2_1:+5452543 None:intergenic
TACACACACGTGAAATGGTT+TGG 0.373410 2_1:+5449445 None:intergenic
GGACTATAGGGGAACCAAAC+TGG 0.385882 2_1:-5449655 Msa0190010:CDS
GTGTCTAAAATTTATACCTC+TGG 0.386177 2_1:-5449546 Msa0190010:three_prime_UTR
CAAGACTTTCAAACTGTTCA+GGG 0.397042 2_1:+5451402 None:intergenic
GAATGAATGCATACCCTTGA+TGG 0.407802 2_1:+5452532 None:intergenic
CACACCTTAATGCTGTCAAA+TGG 0.409752 2_1:+5452392 None:intergenic
AAATCTACACACACGTGAAA+TGG 0.410004 2_1:+5449440 None:intergenic
TTTGAGTTTGAGTTCTTCAA+TGG 0.413777 2_1:-5452623 Msa0190010:exon
GGAACCAAACTGGAGGAAAA+TGG 0.421310 2_1:-5449645 Msa0190010:CDS
ATCATCTTGCATACCCATAA+GGG 0.424264 2_1:+5450187 None:intergenic
CATCATCTTGCATACCCATA+AGG 0.436099 2_1:+5450186 None:intergenic
TGATCCAAGGGTAACTAAGT+AGG 0.442764 2_1:+5449760 None:intergenic
TACCTTTGGCGTTTGAACCT+TGG 0.443481 2_1:+5451379 None:intergenic
TAAACCTACTTAGTTACCCT+TGG 0.445262 2_1:-5449764 Msa0190010:CDS
TTATAACTGGAAGAGGATAA+AGG 0.445717 2_1:+5452556 None:intergenic
AACGAAGAACTCTCTATTCA+TGG 0.451547 2_1:-5449723 Msa0190010:CDS
TCGTTGGCCACAGCTGCTGT+GGG 0.452907 2_1:-5450220 Msa0190010:CDS
GTCGTTGGCCACAGCTGCTG+TGG 0.460065 2_1:-5450221 Msa0190010:CDS
GTGTAGCTTTATCAAAAGTT+GGG 0.461410 2_1:-5450068 Msa0190010:intron
GTGGATAAAGTTTGTAATGT+TGG 0.462582 2_1:+5452770 None:intergenic
GGTGGAAACTTTGTAGCAAA+GGG 0.463259 2_1:+5452577 None:intergenic
CACGAATTGGTAAGTCGATC+AGG 0.466661 2_1:+5449568 None:intergenic
ACACCTTAATGCTGTCAAAT+GGG 0.471844 2_1:+5452393 None:intergenic
TCTTCTTTAAAGGCTTCTAT+GGG 0.484512 2_1:-5451654 Msa0190010:CDS
TTGAGTTGCTGAGTATATCC+TGG 0.486112 2_1:+5451627 None:intergenic
TTCATTTGAGAAATGGACAT+TGG 0.487217 2_1:-5449676 Msa0190010:CDS
GAAAGAGTTATAAACATAGT+TGG 0.488329 2_1:+5452665 None:intergenic
CTTCCAGTTATAACCCATCA+AGG 0.490907 2_1:-5452546 Msa0190010:CDS
TTACCCTTGGATCAAAGAAA+AGG 0.495682 2_1:-5449751 Msa0190010:CDS
TAATGCAGCATTTGTTTCTG+AGG 0.502192 2_1:+5450705 None:intergenic
AATGCAGCATTTGTTTCTGA+GGG 0.509806 2_1:+5450706 None:intergenic
AAGGCTTCTATGGGATCTCC+AGG 0.510919 2_1:-5451645 Msa0190010:CDS
GTAACTAAGTAGGTTTACTA+AGG 0.516928 2_1:+5449770 None:intergenic
AGGTGGAAACTTTGTAGCAA+AGG 0.522465 2_1:+5452576 None:intergenic
TGATGGGTTATAACTGGAAG+AGG 0.525265 2_1:+5452549 None:intergenic
TAAGTAGGTTTACTAAGGAA+TGG 0.532715 2_1:+5449775 None:intergenic
TGTCTAAAATTTATACCTCT+GGG 0.538011 2_1:-5449545 Msa0190010:three_prime_UTR
AAGGGATCAGAGATTGAAGA+AGG 0.543725 2_1:+5452595 None:intergenic
CACACACGTGAAATGGTTTG+GGG 0.556227 2_1:+5449447 None:intergenic
TGATATATTTAATGATCTGA+AGG 0.563309 2_1:-5451559 Msa0190010:CDS
CTTATGGGTATGCAAGATGA+TGG 0.564663 2_1:-5450185 Msa0190010:CDS
AATGAATGCATACCCTTGAT+GGG 0.569966 2_1:+5452533 None:intergenic
GAGGTGGGAAGCAGAAGCCT+TGG 0.571080 2_1:+5450015 None:intergenic
GTTGAGAACATCTTAGTCGT+TGG 0.572846 2_1:-5450236 Msa0190010:CDS
GTTGGCCACAGCTGCTGTGG+GGG 0.577076 2_1:-5450218 Msa0190010:CDS
CCCTTGGATCAAAGAAAAGG+TGG 0.580841 2_1:-5449748 Msa0190010:CDS
ACAGTTTGAAAGTCTTGCCA+AGG 0.582237 2_1:-5451396 Msa0190010:CDS
CCTTCTCGCAATGCGTACAC+TGG 0.586303 2_1:+5449981 None:intergenic
TGCAAGATGATGGCAGTACA+AGG 0.586853 2_1:-5450175 Msa0190010:intron
CGTTGGCCACAGCTGCTGTG+GGG 0.598268 2_1:-5450219 Msa0190010:CDS
CCAGTGTACGCATTGCGAGA+AGG 0.600622 2_1:-5449981 Msa0190010:intron
TGTAATGTTGGTAAACAACA+TGG 0.613132 2_1:+5452782 None:intergenic
AAGTATAAAGAGTGTGTGTG+TGG 0.621516 2_1:+5452751 None:intergenic
TGCCAAGGTTCAAACGCCAA+AGG 0.635821 2_1:-5451381 Msa0190010:intron
CTGGCGATCAAAGTCGAGGT+GGG 0.637149 2_1:+5450000 None:intergenic
TTCCAGTTATAACCCATCAA+GGG 0.637369 2_1:-5452545 Msa0190010:intron
AAATGGACATTGGACTATAG+GGG 0.637668 2_1:-5449666 Msa0190010:CDS
ACTTTAGCAGAAGTTAAAGA+CGG 0.637786 2_1:-5451588 Msa0190010:CDS
ACTGGCGATCAAAGTCGAGG+TGG 0.654998 2_1:+5449999 None:intergenic
TAACTGGAAGAGGATAAAGG+TGG 0.660641 2_1:+5452559 None:intergenic
TACACTGGCGATCAAAGTCG+AGG 0.668978 2_1:+5449996 None:intergenic
AAATGCAAGAGTGAAAACCA+AGG 0.707710 2_1:-5450032 Msa0190010:CDS
CTATAGGGGAACCAAACTGG+AGG 0.709599 2_1:-5449652 Msa0190010:CDS
GAAGAACTCTCTATTCATGG+TGG 0.732574 2_1:-5449720 Msa0190010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAATCAAAAATTGA+GGG + chr2_1:5449455-5449474 None:intergenic 10.0%
!!! TTAAATTGTTTTTATATTAC+AGG - chr2_1:5452360-5452379 Msa0190010:intron 10.0%
!! GATTAATTAATCAAAAATTG+AGG + chr2_1:5449456-5449475 None:intergenic 15.0%
!! ACAAAAAAGAACAAAAATTT+GGG + chr2_1:5449804-5449823 None:intergenic 15.0%
!! AACAAAAAAGAACAAAAATT+TGG + chr2_1:5449805-5449824 None:intergenic 15.0%
!!! TCGATTTTTTTTTTTAAACT+CGG + chr2_1:5449953-5449972 None:intergenic 15.0%
!!! ATTCTTTTAAAGTAAGAAAT+AGG - chr2_1:5450379-5450398 Msa0190010:intron 15.0%
!! TTACAATTATAAAAGAATGT+TGG - chr2_1:5451583-5451602 Msa0190010:CDS 15.0%
!!! CTACAAAAAATAAAGTATTT+TGG - chr2_1:5452554-5452573 Msa0190010:CDS 15.0%
!! TCATAAAGATTCTTCAAAAT+TGG + chr2_1:5449911-5449930 None:intergenic 20.0%
!!! TTTTGAAGAATCTTTATGAT+TGG - chr2_1:5449912-5449931 Msa0190010:intron 20.0%
!! AAAAAAAAAAATCGAGTCTT+CGG - chr2_1:5449958-5449977 Msa0190010:intron 20.0%
!!! AAAAAATTGTTTTTCACCAT+TGG + chr2_1:5450148-5450167 None:intergenic 20.0%
!! TAAATTACAAGCTAATTCTA+TGG + chr2_1:5450200-5450219 None:intergenic 20.0%
!! TAGGAACATTTAATTGAATT+AGG - chr2_1:5450398-5450417 Msa0190010:intron 20.0%
!! TGATATATTTAATGATCTGA+AGG - chr2_1:5450609-5450628 Msa0190010:intron 20.0%
!! ACAGAAATAACTTATATAAG+CGG + chr2_1:5451148-5451167 None:intergenic 20.0%
!!! CATTCTTTTATAATTGTAAC+AGG + chr2_1:5451582-5451601 None:intergenic 20.0%
!! ATTTATACCAAAGAAAGAAA+AGG + chr2_1:5452043-5452062 None:intergenic 20.0%
!! ATTGAATGATATGAACTATT+AGG - chr2_1:5452266-5452285 Msa0190010:intron 20.0%
!! TTACATAATCAAGTTCTTAT+AGG + chr2_1:5452318-5452337 None:intergenic 20.0%
!! TTAATTGTTCATTTGAGAAA+TGG - chr2_1:5452485-5452504 Msa0190010:intron 20.0%
! GAAAGAGTTATAAACATAGT+TGG + chr2_1:5449506-5449525 None:intergenic 25.0%
! AACTCAAACTCAAATGAAAA+TGG + chr2_1:5449539-5449558 None:intergenic 25.0%
! TGCTTACTTTATGTTAATTG+AGG - chr2_1:5449841-5449860 Msa0190010:intron 25.0%
! TATTAAGTTTGAATCTTCAC+CGG - chr2_1:5449877-5449896 Msa0190010:intron 25.0%
! AAAAAAAAAATCGAGTCTTC+GGG - chr2_1:5449959-5449978 Msa0190010:intron 25.0%
!!! GTGAAAAACAATTTTTTGCA+TGG - chr2_1:5450151-5450170 Msa0190010:intron 25.0%
!!! TTGAAATCTCTTTTTTTCTG+TGG - chr2_1:5450443-5450462 Msa0190010:intron 25.0%
! ACATTAGAACTTAGTTTAGA+AGG + chr2_1:5450475-5450494 None:intergenic 25.0%
!! AACTAAGTTCTAATGTTTGT+AGG - chr2_1:5450479-5450498 Msa0190010:intron 25.0%
!! AAAAATAATGTTTCTGACCA+TGG + chr2_1:5450685-5450704 None:intergenic 25.0%
!!! TTAGTTCTGTTTTATTGTCA+GGG - chr2_1:5450739-5450758 Msa0190010:intron 25.0%
! ATAAATCAACAAACAGCTAA+AGG + chr2_1:5450856-5450875 None:intergenic 25.0%
!!! TTTAGCTGTTTGTTGATTTA+TGG - chr2_1:5450855-5450874 Msa0190010:intron 25.0%
! GAATTGAAGAATGAACTTAA+AGG + chr2_1:5450894-5450913 None:intergenic 25.0%
!! AATACTTTGAAAACAGCTTA+TGG - chr2_1:5451242-5451261 Msa0190010:intron 25.0%
! TCAAATAAGTTATTCGTAAC+AGG - chr2_1:5451326-5451345 Msa0190010:intron 25.0%
!! AGTTGTTATTATCATTGCTA+TGG - chr2_1:5451378-5451397 Msa0190010:intron 25.0%
! TGAAATCAACCAATAAGATA+AGG - chr2_1:5451762-5451781 Msa0190010:intron 25.0%
!!! TCTATTAGCTTTCTTAATAG+TGG - chr2_1:5451852-5451871 Msa0190010:intron 25.0%
!! AAGATTTTCACTTCTTGTTA+AGG - chr2_1:5451887-5451906 Msa0190010:intron 25.0%
!! AGGTACTTAATTCTAGTTAT+CGG - chr2_1:5452013-5452032 Msa0190010:intron 25.0%
! GAAAATAGAAGTAAAAACTC+AGG + chr2_1:5452581-5452600 None:intergenic 25.0%
!! TAAATTTTAGACACACGAAT+TGG + chr2_1:5452616-5452635 None:intergenic 25.0%
!! TGTCTAAAATTTATACCTCT+GGG - chr2_1:5452623-5452642 Msa0190010:exon 25.0%
! GAAAGAGAAAAATTTCATCA+TGG + chr2_1:5452789-5452808 None:intergenic 25.0%
! TGTAATGTTGGTAAACAACA+TGG + chr2_1:5449389-5449408 None:intergenic 30.0%
GTGGATAAAGTTTGTAATGT+TGG + chr2_1:5449401-5449420 None:intergenic 30.0%
! TTTGAGTTTGAGTTCTTCAA+TGG - chr2_1:5449545-5449564 Msa0190010:three_prime_UTR 30.0%
TTATAACTGGAAGAGGATAA+AGG + chr2_1:5449615-5449634 None:intergenic 30.0%
AGAAAACAGAGTAAAAACAG+AGG + chr2_1:5449661-5449680 None:intergenic 30.0%
!!! GTTAATTGAGGTGTTTTTAG+TGG - chr2_1:5449853-5449872 Msa0190010:intron 30.0%
ATGAAAAACAGACTTGTGTA+TGG + chr2_1:5450068-5450087 None:intergenic 30.0%
!! ACAAGTCTGTTTTTCATCAT+TGG - chr2_1:5450071-5450090 Msa0190010:intron 30.0%
ATCAAATCAAATAGTGTCTG+TGG - chr2_1:5450285-5450304 Msa0190010:intron 30.0%
TCTTTGTGATCTAAATGTGT+TGG - chr2_1:5450315-5450334 Msa0190010:intron 30.0%
AAAAGAATAGCTGCGAAAAA+TGG + chr2_1:5450367-5450386 None:intergenic 30.0%
ATTGAATTAGGCTTACTGAA+AGG - chr2_1:5450410-5450429 Msa0190010:intron 30.0%
AAGTCAGTGTTCTTCTTTAA+AGG - chr2_1:5450504-5450523 Msa0190010:intron 30.0%
! TTCTTCTTTAAAGGCTTCTA+TGG - chr2_1:5450513-5450532 Msa0190010:intron 30.0%
! TCTTCTTTAAAGGCTTCTAT+GGG - chr2_1:5450514-5450533 Msa0190010:intron 30.0%
ACTTTAGCAGAAGTTAAAGA+CGG - chr2_1:5450580-5450599 Msa0190010:intron 30.0%
!!! GTTAGTTCTGTTTTATTGTC+AGG - chr2_1:5450738-5450757 Msa0190010:intron 30.0%
AAAGACTGAACAATTACCTT+TGG + chr2_1:5450806-5450825 None:intergenic 30.0%
TGAAATCCCAAAATATTGGA+GGG + chr2_1:5451006-5451025 None:intergenic 30.0%
TTGAAATCCCAAAATATTGG+AGG + chr2_1:5451007-5451026 None:intergenic 30.0%
TGGTTGAAATCCCAAAATAT+TGG + chr2_1:5451010-5451029 None:intergenic 30.0%
!!! AATATTTTGGGATTTCAACC+AGG - chr2_1:5451009-5451028 Msa0190010:intron 30.0%
CGAAGTTGTTTATTCAAACA+AGG + chr2_1:5451091-5451110 None:intergenic 30.0%
! ACTGTTTTCATAAGCTATAC+TGG - chr2_1:5451207-5451226 Msa0190010:intron 30.0%
AGAATTAGAAGAAGCAAGTA+GGG + chr2_1:5451421-5451440 None:intergenic 30.0%
CTGCAACAATTTCTATAGAA+AGG - chr2_1:5451633-5451652 Msa0190010:CDS 30.0%
CAACAATTTCTATAGAAAGG+TGG - chr2_1:5451636-5451655 Msa0190010:CDS 30.0%
ATGTCATGACCTTATCTTAT+TGG + chr2_1:5451774-5451793 None:intergenic 30.0%
!!! ATAGACATTTTTTTTCCTGC+AGG - chr2_1:5451910-5451929 Msa0190010:intron 30.0%
! CAACTTTTGATAAAGCTACA+CGG + chr2_1:5452101-5452120 None:intergenic 30.0%
!! GTGTAGCTTTATCAAAAGTT+GGG - chr2_1:5452100-5452119 Msa0190010:intron 30.0%
ATCAAAAGTTGGGTTATTCA+TGG - chr2_1:5452110-5452129 Msa0190010:intron 30.0%
AATGTGTAAATTCACTGTTG+AGG - chr2_1:5452234-5452253 Msa0190010:intron 30.0%
TAAGTAGGTTTACTAAGGAA+TGG + chr2_1:5452396-5452415 None:intergenic 30.0%
GTAACTAAGTAGGTTTACTA+AGG + chr2_1:5452401-5452420 None:intergenic 30.0%
TTCATTTGAGAAATGGACAT+TGG - chr2_1:5452492-5452511 Msa0190010:intron 30.0%
! GTGTCTAAAATTTATACCTC+TGG - chr2_1:5452622-5452641 Msa0190010:exon 30.0%
! GTTGGTAAACAACATGGAAT+AGG + chr2_1:5449383-5449402 None:intergenic 35.0%
! AAGTATAAAGAGTGTGTGTG+TGG + chr2_1:5449420-5449439 None:intergenic 35.0%
TTCCAGTTATAACCCATCAA+GGG - chr2_1:5449623-5449642 Msa0190010:CDS 35.0%
AATGAATGCATACCCTTGAT+GGG + chr2_1:5449638-5449657 None:intergenic 35.0%
ACACCTTAATGCTGTCAAAT+GGG + chr2_1:5449778-5449797 None:intergenic 35.0%
GATTCTTCAAAATTGGTCGT+CGG + chr2_1:5449904-5449923 None:intergenic 35.0%
! GAATCTTTATGATTGGTCGT+CGG - chr2_1:5449919-5449938 Msa0190010:intron 35.0%
GCATACTGATATTGTAACTC+AGG - chr2_1:5450006-5450025 Msa0190010:CDS 35.0%
CTATCTCACTTGTACATCAT+AGG + chr2_1:5450037-5450056 None:intergenic 35.0%
CTATGATGTACAAGTGAGAT+AGG - chr2_1:5450035-5450054 Msa0190010:CDS 35.0%
GTCTTGGATCAAGTGATATA+TGG + chr2_1:5450111-5450130 None:intergenic 35.0%
ACTGAGACTTATTGATCCAA+TGG - chr2_1:5450129-5450148 Msa0190010:intron 35.0%
TGTAAGCTTCAGAAAATCCA+TGG - chr2_1:5450665-5450684 Msa0190010:intron 35.0%
CAAGACTTTCAAACTGTTCA+GGG + chr2_1:5450769-5450788 None:intergenic 35.0%
! ACTTTTCCAAGAACAGTTCA+TGG - chr2_1:5450951-5450970 Msa0190010:intron 35.0%
CAATAACCATGAACTGTTCT+TGG + chr2_1:5450960-5450979 None:intergenic 35.0%
GAAATCCCAAAATATTGGAG+GGG + chr2_1:5451005-5451024 None:intergenic 35.0%
! TAATTTGGTTCCTACCTTTG+AGG - chr2_1:5451059-5451078 Msa0190010:intron 35.0%
! AAACAGAGTGTTTATGTCAG+TGG - chr2_1:5451297-5451316 Msa0190010:intron 35.0%
GTCAATAGAAGTGAAACTTC+AGG + chr2_1:5451352-5451371 None:intergenic 35.0%
GAGAATTAGAAGAAGCAAGT+AGG + chr2_1:5451422-5451441 None:intergenic 35.0%
!! AATGCAGCATTTGTTTCTGA+GGG + chr2_1:5451465-5451484 None:intergenic 35.0%
!! TAATGCAGCATTTGTTTCTG+AGG + chr2_1:5451466-5451485 None:intergenic 35.0%
ATTTGCAGTAAACACTCTTC+TGG - chr2_1:5451488-5451507 Msa0190010:intron 35.0%
AATCATGTCTTGCACTATGT+AGG + chr2_1:5451529-5451548 None:intergenic 35.0%
GAAAGGTGGAATTTAAAGAG+CGG - chr2_1:5451650-5451669 Msa0190010:CDS 35.0%
TATGGAAAGTTAAGCTTCGA+GGG - chr2_1:5451675-5451694 Msa0190010:intron 35.0%
! GTTGATTTCACTTGTGACTA+TGG + chr2_1:5451752-5451771 None:intergenic 35.0%
ATCATCTTGCATACCCATAA+GGG + chr2_1:5451984-5452003 None:intergenic 35.0%
! CGGTTTTCCTTTTCTTTCTT+TGG - chr2_1:5452033-5452052 Msa0190010:intron 35.0%
!! CGTGTAGCTTTATCAAAAGT+TGG - chr2_1:5452099-5452118 Msa0190010:intron 35.0%
AAATGCAAGAGTGAAAACCA+AGG - chr2_1:5452136-5452155 Msa0190010:intron 35.0%
TAAACCTACTTAGTTACCCT+TGG - chr2_1:5452404-5452423 Msa0190010:CDS 35.0%
TTACCCTTGGATCAAAGAAA+AGG - chr2_1:5452417-5452436 Msa0190010:CDS 35.0%
AACGAAGAACTCTCTATTCA+TGG - chr2_1:5452445-5452464 Msa0190010:intron 35.0%
AGAAATGGACATTGGACTAT+AGG - chr2_1:5452500-5452519 Msa0190010:intron 35.0%
GAAATGGACATTGGACTATA+GGG - chr2_1:5452501-5452520 Msa0190010:intron 35.0%
AAATGGACATTGGACTATAG+GGG - chr2_1:5452502-5452521 Msa0190010:intron 35.0%
AAATCTACACACACGTGAAA+TGG + chr2_1:5452731-5452750 None:intergenic 35.0%
AAGGGATCAGAGATTGAAGA+AGG + chr2_1:5449576-5449595 None:intergenic 40.0%
GGTGGAAACTTTGTAGCAAA+GGG + chr2_1:5449594-5449613 None:intergenic 40.0%
AGGTGGAAACTTTGTAGCAA+AGG + chr2_1:5449595-5449614 None:intergenic 40.0%
TAACTGGAAGAGGATAAAGG+TGG + chr2_1:5449612-5449631 None:intergenic 40.0%
!! TGATGGGTTATAACTGGAAG+AGG + chr2_1:5449622-5449641 None:intergenic 40.0%
CTTCCAGTTATAACCCATCA+AGG - chr2_1:5449622-5449641 Msa0190010:CDS 40.0%
!! TACCCTTGATGGGTTATAAC+TGG + chr2_1:5449628-5449647 None:intergenic 40.0%
GAATGAATGCATACCCTTGA+TGG + chr2_1:5449639-5449658 None:intergenic 40.0%
!! ATTTTAGCCGTAATTTGCGC+AGG + chr2_1:5449747-5449766 None:intergenic 40.0%
AGACCCATTTGACAGCATTA+AGG - chr2_1:5449772-5449791 Msa0190010:CDS 40.0%
CACACCTTAATGCTGTCAAA+TGG + chr2_1:5449779-5449798 None:intergenic 40.0%
! TTTATGATTGGTCGTCGGTT+TGG - chr2_1:5449924-5449943 Msa0190010:intron 40.0%
GGATCAATAAGTCTCAGTCT+TGG + chr2_1:5450127-5450146 None:intergenic 40.0%
! TGATCTAAATGTGTTGGCAC+TGG - chr2_1:5450321-5450340 Msa0190010:intron 40.0%
! TTGAGTTGCTGAGTATATCC+TGG + chr2_1:5450544-5450563 None:intergenic 40.0%
GCAAGACTTTCAAACTGTTC+AGG + chr2_1:5450770-5450789 None:intergenic 40.0%
ACAGTTTGAAAGTCTTGCCA+AGG - chr2_1:5450772-5450791 Msa0190010:intron 40.0%
TCTCTCTATTATCCACCTTC+TGG - chr2_1:5450825-5450844 Msa0190010:intron 40.0%
! GTATGCCCCTCCAATATTTT+GGG - chr2_1:5450997-5451016 Msa0190010:intron 40.0%
AATCCGCAACGTTGCTAATT+TGG - chr2_1:5451044-5451063 Msa0190010:intron 40.0%
GAACCAAATTAGCAACGTTG+CGG + chr2_1:5451050-5451069 None:intergenic 40.0%
AAACAAGGCCTATACCTCAA+AGG + chr2_1:5451076-5451095 None:intergenic 40.0%
AAGCTATACTGGAGAGCTTA+TGG - chr2_1:5451218-5451237 Msa0190010:intron 40.0%
! TCTCTTTTCCTGATACAGAG+TGG - chr2_1:5451438-5451457 Msa0190010:intron 40.0%
GGAATTTAAAGAGCGGAGTA+TGG - chr2_1:5451657-5451676 Msa0190010:CDS 40.0%
GTATGGAAAGTTAAGCTTCG+AGG - chr2_1:5451674-5451693 Msa0190010:intron 40.0%
GTTGAGAACATCTTAGTCGT+TGG - chr2_1:5451932-5451951 Msa0190010:intron 40.0%
CATCATCTTGCATACCCATA+AGG + chr2_1:5451985-5452004 None:intergenic 40.0%
CTTATGGGTATGCAAGATGA+TGG - chr2_1:5451983-5452002 Msa0190010:intron 40.0%
TGATCCAAGGGTAACTAAGT+AGG + chr2_1:5452411-5452430 None:intergenic 40.0%
! CCACCTTTTCTTTGATCCAA+GGG + chr2_1:5452423-5452442 None:intergenic 40.0%
! TCCACCTTTTCTTTGATCCA+AGG + chr2_1:5452424-5452443 None:intergenic 40.0%
GAAGAACTCTCTATTCATGG+TGG - chr2_1:5452448-5452467 Msa0190010:intron 40.0%
! ATCTATGCTTTTAGTCCCAG+AGG + chr2_1:5452641-5452660 None:intergenic 40.0%
ACACACACGTGAAATGGTTT+GGG + chr2_1:5452725-5452744 None:intergenic 40.0%
TACACACACGTGAAATGGTT+TGG + chr2_1:5452726-5452745 None:intergenic 40.0%
CTCTGTTCCTGCGCAAATTA+CGG - chr2_1:5449737-5449756 Msa0190010:CDS 45.0%
TTCAAAATTGGTCGTCGGTC+CGG + chr2_1:5449899-5449918 None:intergenic 45.0%
TACCTTTGGCGTTTGAACCT+TGG + chr2_1:5450792-5450811 None:intergenic 45.0%
TTATTGCCTGTGCAGATTCC+AGG - chr2_1:5450974-5450993 Msa0190010:intron 45.0%
TATTGCCTGTGCAGATTCCA+GGG - chr2_1:5450975-5450994 Msa0190010:intron 45.0%
! GGTATGCCCCTCCAATATTT+TGG - chr2_1:5450996-5451015 Msa0190010:intron 45.0%
!! GGTTCCTACCTTTGAGGTAT+AGG - chr2_1:5451065-5451084 Msa0190010:intron 45.0%
AAGGCCTATACCTCAAAGGT+AGG + chr2_1:5451072-5451091 None:intergenic 45.0%
CTAAGATGTTCTCAACCTGC+AGG + chr2_1:5451928-5451947 None:intergenic 45.0%
! TGCAAGATGATGGCAGTACA+AGG - chr2_1:5451993-5452012 Msa0190010:intron 45.0%
CCCTTGGATCAAAGAAAAGG+TGG - chr2_1:5452420-5452439 Msa0190010:CDS 45.0%
GGAACCAAACTGGAGGAAAA+TGG - chr2_1:5452523-5452542 Msa0190010:intron 45.0%
!!! TCTGCCATTTTCCTCCAGTT+TGG + chr2_1:5452530-5452549 None:intergenic 45.0%
CACGAATTGGTAAGTCGATC+AGG + chr2_1:5452603-5452622 None:intergenic 45.0%
CACACACGTGAAATGGTTTG+GGG + chr2_1:5452724-5452743 None:intergenic 45.0%
AAGGCTTCTATGGGATCTCC+AGG - chr2_1:5450523-5450542 Msa0190010:intron 50.0%
TGCCAAGGTTCAAACGCCAA+AGG - chr2_1:5450787-5450806 Msa0190010:intron 50.0%
CTAAAGGCTTAGCCAGAAGG+TGG + chr2_1:5450840-5450859 None:intergenic 50.0%
CAGCTAAAGGCTTAGCCAGA+AGG + chr2_1:5450843-5450862 None:intergenic 50.0%
! AATATTGGAGGGGCATACCC+TGG + chr2_1:5450995-5451014 None:intergenic 50.0%
CGGATTGTAAACGCATCTCC+TGG + chr2_1:5451030-5451049 None:intergenic 50.0%
TACACTGGCGATCAAAGTCG+AGG + chr2_1:5452175-5452194 None:intergenic 50.0%
GGACTATAGGGGAACCAAAC+TGG - chr2_1:5452513-5452532 Msa0190010:intron 50.0%
CTATAGGGGAACCAAACTGG+AGG - chr2_1:5452516-5452535 Msa0190010:intron 50.0%
GCATACCCTGGAATCTGCAC+AGG + chr2_1:5450983-5451002 None:intergenic 55.0%
CTGAGGGTCCACTCTGTATC+AGG + chr2_1:5451449-5451468 None:intergenic 55.0%
CTGGCGATCAAAGTCGAGGT+GGG + chr2_1:5452171-5452190 None:intergenic 55.0%
ACTGGCGATCAAAGTCGAGG+TGG + chr2_1:5452172-5452191 None:intergenic 55.0%
CCTTCTCGCAATGCGTACAC+TGG + chr2_1:5452190-5452209 None:intergenic 55.0%
CCAGTGTACGCATTGCGAGA+AGG - chr2_1:5452187-5452206 Msa0190010:intron 55.0%
TCGTTGGCCACAGCTGCTGT+GGG - chr2_1:5451948-5451967 Msa0190010:intron 60.0%
GTATACCCCCACAGCAGCTG+TGG + chr2_1:5451958-5451977 None:intergenic 60.0%
! TGGGGGTATACGCGCCCTTA+TGG - chr2_1:5451967-5451986 Msa0190010:intron 60.0%
! GGGGGTATACGCGCCCTTAT+GGG - chr2_1:5451968-5451987 Msa0190010:intron 60.0%
GAGGTGGGAAGCAGAAGCCT+TGG + chr2_1:5452156-5452175 None:intergenic 60.0%
GTCGTTGGCCACAGCTGCTG+TGG - chr2_1:5451947-5451966 Msa0190010:intron 65.0%
CGTTGGCCACAGCTGCTGTG+GGG - chr2_1:5451949-5451968 Msa0190010:intron 65.0%
GTTGGCCACAGCTGCTGTGG+GGG - chr2_1:5451950-5451969 Msa0190010:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 5449374 5452816 5449374 ID=Msa0190010;Name=Msa0190010
chr2_1 mRNA 5449374 5452816 5449374 ID=Msa0190010-mRNA-1;Parent=Msa0190010;Name=Msa0190010-mRNA-1;_AED=0.11;_eAED=0.11;_QI=190|0.85|1|1|1|1|8|234|264
chr2_1 exon 5449374 5449808 5449374 ID=Msa0190010-mRNA-1:exon:2456;Parent=Msa0190010-mRNA-1
chr2_1 exon 5449982 5450084 5449982 ID=Msa0190010-mRNA-1:exon:2455;Parent=Msa0190010-mRNA-1
chr2_1 exon 5450176 5450258 5450176 ID=Msa0190010-mRNA-1:exon:2454;Parent=Msa0190010-mRNA-1
chr2_1 exon 5450681 5450734 5450681 ID=Msa0190010-mRNA-1:exon:2453;Parent=Msa0190010-mRNA-1
chr2_1 exon 5451382 5451430 5451382 ID=Msa0190010-mRNA-1:exon:2452;Parent=Msa0190010-mRNA-1
chr2_1 exon 5451525 5451689 5451525 ID=Msa0190010-mRNA-1:exon:2451;Parent=Msa0190010-mRNA-1
chr2_1 exon 5452397 5452455 5452397 ID=Msa0190010-mRNA-1:exon:2450;Parent=Msa0190010-mRNA-1
chr2_1 exon 5452546 5452816 5452546 ID=Msa0190010-mRNA-1:exon:2449;Parent=Msa0190010-mRNA-1
chr2_1 five_prime_UTR 5452627 5452816 5452627 ID=Msa0190010-mRNA-1:five_prime_utr;Parent=Msa0190010-mRNA-1
chr2_1 CDS 5452546 5452626 5452546 ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1
chr2_1 CDS 5452397 5452455 5452397 ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1
chr2_1 CDS 5451525 5451689 5451525 ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1
chr2_1 CDS 5451382 5451430 5451382 ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1
chr2_1 CDS 5450681 5450734 5450681 ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1
chr2_1 CDS 5450176 5450258 5450176 ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1
chr2_1 CDS 5449982 5450084 5449982 ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1
chr2_1 CDS 5449608 5449808 5449608 ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1
chr2_1 three_prime_UTR 5449374 5449607 5449374 ID=Msa0190010-mRNA-1:three_prime_utr;Parent=Msa0190010-mRNA-1
Gene Sequence

>Msa0190010

ATGGCAATTCCTTCTTCAATCTCTGATCCCTTTGCTACAAAGTTTCCACCTTTATCCTCTTCCAGTTATAACCCATCAAGGATCTCTGTTCCTGCGCAAATTACGGCTAAAATTGAGCAGACCCATTTGACAGCATTAAGGAGAAGTCAGTGTTCTTCTTTAAAGGCTTCTATGGGATCTCCAGGATATACTCAGCAACTCAATAACAGCAAGTTAGATACTTTAGCAGAAGTTAAAGACGGACGTGATGATATATTTAATGATCTGAAGGATAGATTTTTAAGTTTTAAGAAGAATGTATACATGGAAAACCCTGAACAGTTTGAAAGTCTTGCCAAGGTTCAAACGCCAAAGAGTGGACCCTCAGAAACAAATGCTGCATTAGAATTTGCAGTAAACACTCTTCTGGTTGAGAACATCTTAGTCGTTGGCCACAGCTGCTGTGGGGGTATACGCGCCCTTATGGGTATGCAAGATGATGGCAGTACAAGCTTTATCAAAAGTTGGGTTATTCATGGAAAAAATGCAAGAGTGAAAACCAAGGCTTCTGCTTCCCACCTCGACTTTGATCGCCAGTGTACGCATTGCGAGAAGGAATCAATTAACCATTCCTTAGTAAACCTACTTAGTTACCCTTGGATCAAAGAAAAGGTGGAGAACGAAGAACTCTCTATTCATGGTGGTTACTATGACTTTGTTAATTGTTCATTTGAGAAATGGACATTGGACTATAGGGGAACCAAACTGGAGGAAAATGGCAGAATTGCTACAAAAAATAAAGTATTTTGGTCCTGA

Protein sequence

>Msa0190010

MAIPSSISDPFATKFPPLSSSSYNPSRISVPAQITAKIEQTHLTALRRSQCSSLKASMGSPGYTQQLNNSKLDTLAEVKDGRDDIFNDLKDRFLSFKKNVYMENPEQFESLAKVQTPKSGPSETNAALEFAVNTLLVENILVVGHSCCGGIRALMGMQDDGSTSFIKSWVIHGKNARVKTKASASHLDFDRQCTHCEKESINHSLVNLLSYPWIKEKVENEELSIHGGYYDFVNCSFEKWTLDYRGTKLEENGRIATKNKVFWS*