Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190010 | XP_003593260.1 | 84.768 | 302 | 8 | 1 | 1 | 264 | 1 | 302 | 0.0 | 517 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190010 | sp|Q94CE3|BCA5_ARATH | 47.426 | 272 | 93 | 6 | 37 | 264 | 36 | 301 | 9.58e-75 | 233 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190010 | G7IPN8 | 84.768 | 302 | 8 | 1 | 1 | 264 | 1 | 302 | 0.0 | 517 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0053480 | Msa0190010 | 0.809469 | 1.863071e-50 | -8.615850e-47 |
Msa0190010 | Msa0307760 | 0.828378 | 9.297017e-55 | -8.615850e-47 |
Msa0190010 | Msa0907900 | 0.829267 | 5.664773e-55 | -8.615850e-47 |
Msa0190010 | Msa1430930 | 0.848104 | 7.578463e-60 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190010 | MtrunA17_Chr2g0279581 | 84.768 | 302 | 8 | 1 | 1 | 264 | 1 | 302 | 0.0 | 517 |
Msa0190010 | MtrunA17_Chr5g0427341 | 41.311 | 305 | 125 | 8 | 7 | 263 | 10 | 308 | 2.30e-66 | 208 |
Msa0190010 | MtrunA17_Chr5g0413551 | 38.579 | 197 | 80 | 2 | 89 | 244 | 52 | 248 | 4.70e-41 | 142 |
Msa0190010 | MtrunA17_Chr8g0365441 | 32.342 | 269 | 120 | 5 | 18 | 245 | 1 | 248 | 2.46e-40 | 140 |
Msa0190010 | MtrunA17_Chr6g0450641 | 34.413 | 247 | 109 | 4 | 39 | 244 | 89 | 323 | 5.90e-38 | 135 |
Msa0190010 | MtrunA17_Chr3g0117661 | 38.220 | 191 | 77 | 3 | 91 | 240 | 55 | 245 | 3.32e-35 | 127 |
Msa0190010 | MtrunA17_Chr3g0117691 | 47.934 | 121 | 61 | 1 | 122 | 240 | 125 | 245 | 3.44e-33 | 121 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190010 | AT4G33580.3 | 47.426 | 272 | 93 | 6 | 37 | 264 | 36 | 301 | 9.74e-76 | 233 |
Msa0190010 | AT4G33580.1 | 47.426 | 272 | 93 | 6 | 37 | 264 | 36 | 301 | 9.74e-76 | 233 |
Msa0190010 | AT4G33580.2 | 46.886 | 273 | 94 | 7 | 37 | 264 | 36 | 302 | 2.87e-73 | 226 |
Msa0190010 | AT1G58180.7 | 41.206 | 199 | 77 | 2 | 84 | 242 | 23 | 221 | 1.17e-50 | 166 |
Msa0190010 | AT1G58180.3 | 41.206 | 199 | 77 | 2 | 84 | 242 | 23 | 221 | 1.17e-50 | 166 |
Msa0190010 | AT1G58180.6 | 41.206 | 199 | 77 | 2 | 84 | 242 | 23 | 221 | 1.17e-50 | 166 |
Msa0190010 | AT1G58180.2 | 41.206 | 199 | 77 | 2 | 84 | 242 | 74 | 272 | 2.08e-50 | 167 |
Msa0190010 | AT1G58180.4 | 41.206 | 199 | 77 | 2 | 84 | 242 | 74 | 272 | 2.08e-50 | 167 |
Msa0190010 | AT1G23730.2 | 37.788 | 217 | 93 | 2 | 73 | 247 | 36 | 252 | 2.52e-44 | 150 |
Msa0190010 | AT1G23730.1 | 37.788 | 217 | 93 | 2 | 73 | 247 | 36 | 252 | 2.52e-44 | 150 |
Msa0190010 | AT1G70410.3 | 38.140 | 215 | 91 | 3 | 75 | 247 | 38 | 252 | 5.97e-42 | 144 |
Msa0190010 | AT1G70410.1 | 38.140 | 215 | 91 | 3 | 75 | 247 | 38 | 252 | 5.97e-42 | 144 |
Msa0190010 | AT1G70410.2 | 38.140 | 215 | 91 | 3 | 75 | 247 | 60 | 274 | 1.53e-41 | 144 |
Msa0190010 | AT1G58180.1 | 39.326 | 178 | 68 | 2 | 84 | 221 | 74 | 251 | 3.87e-40 | 140 |
Msa0190010 | AT5G14740.9 | 38.614 | 202 | 83 | 3 | 84 | 244 | 50 | 251 | 8.46e-37 | 131 |
Msa0190010 | AT5G14740.8 | 38.614 | 202 | 83 | 3 | 84 | 244 | 50 | 251 | 8.46e-37 | 131 |
Msa0190010 | AT5G14740.7 | 38.614 | 202 | 83 | 3 | 84 | 244 | 50 | 251 | 8.46e-37 | 131 |
Msa0190010 | AT5G14740.2 | 38.614 | 202 | 83 | 3 | 84 | 244 | 50 | 251 | 8.46e-37 | 131 |
Msa0190010 | AT5G14740.6 | 38.614 | 202 | 83 | 3 | 84 | 244 | 50 | 251 | 8.46e-37 | 131 |
Msa0190010 | AT5G14740.1 | 38.614 | 202 | 83 | 3 | 84 | 244 | 122 | 323 | 4.32e-36 | 131 |
Msa0190010 | AT3G01500.4 | 36.634 | 202 | 87 | 3 | 84 | 244 | 50 | 251 | 1.75e-34 | 125 |
Msa0190010 | AT3G01500.1 | 36.634 | 202 | 87 | 3 | 84 | 244 | 50 | 251 | 2.83e-34 | 125 |
Msa0190010 | AT3G01500.3 | 36.634 | 202 | 87 | 3 | 84 | 244 | 127 | 328 | 3.42e-34 | 126 |
Msa0190010 | AT3G01500.2 | 36.634 | 202 | 87 | 3 | 84 | 244 | 127 | 328 | 6.34e-34 | 125 |
Msa0190010 | AT5G14740.4 | 38.119 | 202 | 83 | 4 | 84 | 244 | 122 | 322 | 1.35e-33 | 124 |
Msa0190010 | AT5G14740.3 | 38.119 | 202 | 83 | 4 | 84 | 244 | 122 | 322 | 5.08e-33 | 123 |
Msa0190010 | AT1G58180.5 | 38.710 | 155 | 55 | 2 | 84 | 198 | 74 | 228 | 4.05e-30 | 114 |
Msa0190010 | AT5G14740.5 | 33.974 | 156 | 62 | 3 | 84 | 198 | 122 | 277 | 1.47e-15 | 75.5 |
Find 79 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGTCAGTGTTCTTCTTTAA+AGG | 0.218106 | 2_1:-5451664 | Msa0190010:CDS |
TTCTTCTTTAAAGGCTTCTA+TGG | 0.218623 | 2_1:-5451655 | Msa0190010:CDS |
GCAAGACTTTCAAACTGTTC+AGG | 0.276705 | 2_1:+5451401 | None:intergenic |
AACTCAAACTCAAATGAAAA+TGG | 0.297130 | 2_1:+5452632 | None:intergenic |
GAAATGGACATTGGACTATA+GGG | 0.318375 | 2_1:-5449667 | Msa0190010:CDS |
ATCAAAAGTTGGGTTATTCA+TGG | 0.325701 | 2_1:-5450058 | Msa0190010:CDS |
ACACACACGTGAAATGGTTT+GGG | 0.331034 | 2_1:+5449446 | None:intergenic |
ATTTGCAGTAAACACTCTTC+TGG | 0.333907 | 2_1:-5450680 | Msa0190010:intron |
CGTGTAGCTTTATCAAAAGT+TGG | 0.339113 | 2_1:-5450069 | Msa0190010:intron |
AGAAATGGACATTGGACTAT+AGG | 0.342791 | 2_1:-5449668 | Msa0190010:CDS |
TTAATTGTTCATTTGAGAAA+TGG | 0.357926 | 2_1:-5449683 | Msa0190010:CDS |
CTCTGTTCCTGCGCAAATTA+CGG | 0.359512 | 2_1:-5452431 | Msa0190010:CDS |
GTTGGTAAACAACATGGAAT+AGG | 0.359886 | 2_1:+5452788 | None:intergenic |
AGACCCATTTGACAGCATTA+AGG | 0.363149 | 2_1:-5452396 | Msa0190010:intron |
TACCCTTGATGGGTTATAAC+TGG | 0.371016 | 2_1:+5452543 | None:intergenic |
TACACACACGTGAAATGGTT+TGG | 0.373410 | 2_1:+5449445 | None:intergenic |
GGACTATAGGGGAACCAAAC+TGG | 0.385882 | 2_1:-5449655 | Msa0190010:CDS |
GTGTCTAAAATTTATACCTC+TGG | 0.386177 | 2_1:-5449546 | Msa0190010:three_prime_UTR |
CAAGACTTTCAAACTGTTCA+GGG | 0.397042 | 2_1:+5451402 | None:intergenic |
GAATGAATGCATACCCTTGA+TGG | 0.407802 | 2_1:+5452532 | None:intergenic |
CACACCTTAATGCTGTCAAA+TGG | 0.409752 | 2_1:+5452392 | None:intergenic |
AAATCTACACACACGTGAAA+TGG | 0.410004 | 2_1:+5449440 | None:intergenic |
TTTGAGTTTGAGTTCTTCAA+TGG | 0.413777 | 2_1:-5452623 | Msa0190010:exon |
GGAACCAAACTGGAGGAAAA+TGG | 0.421310 | 2_1:-5449645 | Msa0190010:CDS |
ATCATCTTGCATACCCATAA+GGG | 0.424264 | 2_1:+5450187 | None:intergenic |
CATCATCTTGCATACCCATA+AGG | 0.436099 | 2_1:+5450186 | None:intergenic |
TGATCCAAGGGTAACTAAGT+AGG | 0.442764 | 2_1:+5449760 | None:intergenic |
TACCTTTGGCGTTTGAACCT+TGG | 0.443481 | 2_1:+5451379 | None:intergenic |
TAAACCTACTTAGTTACCCT+TGG | 0.445262 | 2_1:-5449764 | Msa0190010:CDS |
TTATAACTGGAAGAGGATAA+AGG | 0.445717 | 2_1:+5452556 | None:intergenic |
AACGAAGAACTCTCTATTCA+TGG | 0.451547 | 2_1:-5449723 | Msa0190010:CDS |
TCGTTGGCCACAGCTGCTGT+GGG | 0.452907 | 2_1:-5450220 | Msa0190010:CDS |
GTCGTTGGCCACAGCTGCTG+TGG | 0.460065 | 2_1:-5450221 | Msa0190010:CDS |
GTGTAGCTTTATCAAAAGTT+GGG | 0.461410 | 2_1:-5450068 | Msa0190010:intron |
GTGGATAAAGTTTGTAATGT+TGG | 0.462582 | 2_1:+5452770 | None:intergenic |
GGTGGAAACTTTGTAGCAAA+GGG | 0.463259 | 2_1:+5452577 | None:intergenic |
CACGAATTGGTAAGTCGATC+AGG | 0.466661 | 2_1:+5449568 | None:intergenic |
ACACCTTAATGCTGTCAAAT+GGG | 0.471844 | 2_1:+5452393 | None:intergenic |
TCTTCTTTAAAGGCTTCTAT+GGG | 0.484512 | 2_1:-5451654 | Msa0190010:CDS |
TTGAGTTGCTGAGTATATCC+TGG | 0.486112 | 2_1:+5451627 | None:intergenic |
TTCATTTGAGAAATGGACAT+TGG | 0.487217 | 2_1:-5449676 | Msa0190010:CDS |
GAAAGAGTTATAAACATAGT+TGG | 0.488329 | 2_1:+5452665 | None:intergenic |
CTTCCAGTTATAACCCATCA+AGG | 0.490907 | 2_1:-5452546 | Msa0190010:CDS |
TTACCCTTGGATCAAAGAAA+AGG | 0.495682 | 2_1:-5449751 | Msa0190010:CDS |
TAATGCAGCATTTGTTTCTG+AGG | 0.502192 | 2_1:+5450705 | None:intergenic |
AATGCAGCATTTGTTTCTGA+GGG | 0.509806 | 2_1:+5450706 | None:intergenic |
AAGGCTTCTATGGGATCTCC+AGG | 0.510919 | 2_1:-5451645 | Msa0190010:CDS |
GTAACTAAGTAGGTTTACTA+AGG | 0.516928 | 2_1:+5449770 | None:intergenic |
AGGTGGAAACTTTGTAGCAA+AGG | 0.522465 | 2_1:+5452576 | None:intergenic |
TGATGGGTTATAACTGGAAG+AGG | 0.525265 | 2_1:+5452549 | None:intergenic |
TAAGTAGGTTTACTAAGGAA+TGG | 0.532715 | 2_1:+5449775 | None:intergenic |
TGTCTAAAATTTATACCTCT+GGG | 0.538011 | 2_1:-5449545 | Msa0190010:three_prime_UTR |
AAGGGATCAGAGATTGAAGA+AGG | 0.543725 | 2_1:+5452595 | None:intergenic |
CACACACGTGAAATGGTTTG+GGG | 0.556227 | 2_1:+5449447 | None:intergenic |
TGATATATTTAATGATCTGA+AGG | 0.563309 | 2_1:-5451559 | Msa0190010:CDS |
CTTATGGGTATGCAAGATGA+TGG | 0.564663 | 2_1:-5450185 | Msa0190010:CDS |
AATGAATGCATACCCTTGAT+GGG | 0.569966 | 2_1:+5452533 | None:intergenic |
GAGGTGGGAAGCAGAAGCCT+TGG | 0.571080 | 2_1:+5450015 | None:intergenic |
GTTGAGAACATCTTAGTCGT+TGG | 0.572846 | 2_1:-5450236 | Msa0190010:CDS |
GTTGGCCACAGCTGCTGTGG+GGG | 0.577076 | 2_1:-5450218 | Msa0190010:CDS |
CCCTTGGATCAAAGAAAAGG+TGG | 0.580841 | 2_1:-5449748 | Msa0190010:CDS |
ACAGTTTGAAAGTCTTGCCA+AGG | 0.582237 | 2_1:-5451396 | Msa0190010:CDS |
CCTTCTCGCAATGCGTACAC+TGG | 0.586303 | 2_1:+5449981 | None:intergenic |
TGCAAGATGATGGCAGTACA+AGG | 0.586853 | 2_1:-5450175 | Msa0190010:intron |
CGTTGGCCACAGCTGCTGTG+GGG | 0.598268 | 2_1:-5450219 | Msa0190010:CDS |
CCAGTGTACGCATTGCGAGA+AGG | 0.600622 | 2_1:-5449981 | Msa0190010:intron |
TGTAATGTTGGTAAACAACA+TGG | 0.613132 | 2_1:+5452782 | None:intergenic |
AAGTATAAAGAGTGTGTGTG+TGG | 0.621516 | 2_1:+5452751 | None:intergenic |
TGCCAAGGTTCAAACGCCAA+AGG | 0.635821 | 2_1:-5451381 | Msa0190010:intron |
CTGGCGATCAAAGTCGAGGT+GGG | 0.637149 | 2_1:+5450000 | None:intergenic |
TTCCAGTTATAACCCATCAA+GGG | 0.637369 | 2_1:-5452545 | Msa0190010:intron |
AAATGGACATTGGACTATAG+GGG | 0.637668 | 2_1:-5449666 | Msa0190010:CDS |
ACTTTAGCAGAAGTTAAAGA+CGG | 0.637786 | 2_1:-5451588 | Msa0190010:CDS |
ACTGGCGATCAAAGTCGAGG+TGG | 0.654998 | 2_1:+5449999 | None:intergenic |
TAACTGGAAGAGGATAAAGG+TGG | 0.660641 | 2_1:+5452559 | None:intergenic |
TACACTGGCGATCAAAGTCG+AGG | 0.668978 | 2_1:+5449996 | None:intergenic |
AAATGCAAGAGTGAAAACCA+AGG | 0.707710 | 2_1:-5450032 | Msa0190010:CDS |
CTATAGGGGAACCAAACTGG+AGG | 0.709599 | 2_1:-5449652 | Msa0190010:CDS |
GAAGAACTCTCTATTCATGG+TGG | 0.732574 | 2_1:-5449720 | Msa0190010:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAATTAATCAAAAATTGA+GGG | + | chr2_1:5449455-5449474 | None:intergenic | 10.0% |
!!! | TTAAATTGTTTTTATATTAC+AGG | - | chr2_1:5452360-5452379 | Msa0190010:intron | 10.0% |
!! | GATTAATTAATCAAAAATTG+AGG | + | chr2_1:5449456-5449475 | None:intergenic | 15.0% |
!! | ACAAAAAAGAACAAAAATTT+GGG | + | chr2_1:5449804-5449823 | None:intergenic | 15.0% |
!! | AACAAAAAAGAACAAAAATT+TGG | + | chr2_1:5449805-5449824 | None:intergenic | 15.0% |
!!! | TCGATTTTTTTTTTTAAACT+CGG | + | chr2_1:5449953-5449972 | None:intergenic | 15.0% |
!!! | ATTCTTTTAAAGTAAGAAAT+AGG | - | chr2_1:5450379-5450398 | Msa0190010:intron | 15.0% |
!! | TTACAATTATAAAAGAATGT+TGG | - | chr2_1:5451583-5451602 | Msa0190010:CDS | 15.0% |
!!! | CTACAAAAAATAAAGTATTT+TGG | - | chr2_1:5452554-5452573 | Msa0190010:CDS | 15.0% |
!! | TCATAAAGATTCTTCAAAAT+TGG | + | chr2_1:5449911-5449930 | None:intergenic | 20.0% |
!!! | TTTTGAAGAATCTTTATGAT+TGG | - | chr2_1:5449912-5449931 | Msa0190010:intron | 20.0% |
!! | AAAAAAAAAAATCGAGTCTT+CGG | - | chr2_1:5449958-5449977 | Msa0190010:intron | 20.0% |
!!! | AAAAAATTGTTTTTCACCAT+TGG | + | chr2_1:5450148-5450167 | None:intergenic | 20.0% |
!! | TAAATTACAAGCTAATTCTA+TGG | + | chr2_1:5450200-5450219 | None:intergenic | 20.0% |
!! | TAGGAACATTTAATTGAATT+AGG | - | chr2_1:5450398-5450417 | Msa0190010:intron | 20.0% |
!! | TGATATATTTAATGATCTGA+AGG | - | chr2_1:5450609-5450628 | Msa0190010:intron | 20.0% |
!! | ACAGAAATAACTTATATAAG+CGG | + | chr2_1:5451148-5451167 | None:intergenic | 20.0% |
!!! | CATTCTTTTATAATTGTAAC+AGG | + | chr2_1:5451582-5451601 | None:intergenic | 20.0% |
!! | ATTTATACCAAAGAAAGAAA+AGG | + | chr2_1:5452043-5452062 | None:intergenic | 20.0% |
!! | ATTGAATGATATGAACTATT+AGG | - | chr2_1:5452266-5452285 | Msa0190010:intron | 20.0% |
!! | TTACATAATCAAGTTCTTAT+AGG | + | chr2_1:5452318-5452337 | None:intergenic | 20.0% |
!! | TTAATTGTTCATTTGAGAAA+TGG | - | chr2_1:5452485-5452504 | Msa0190010:intron | 20.0% |
! | GAAAGAGTTATAAACATAGT+TGG | + | chr2_1:5449506-5449525 | None:intergenic | 25.0% |
! | AACTCAAACTCAAATGAAAA+TGG | + | chr2_1:5449539-5449558 | None:intergenic | 25.0% |
! | TGCTTACTTTATGTTAATTG+AGG | - | chr2_1:5449841-5449860 | Msa0190010:intron | 25.0% |
! | TATTAAGTTTGAATCTTCAC+CGG | - | chr2_1:5449877-5449896 | Msa0190010:intron | 25.0% |
! | AAAAAAAAAATCGAGTCTTC+GGG | - | chr2_1:5449959-5449978 | Msa0190010:intron | 25.0% |
!!! | GTGAAAAACAATTTTTTGCA+TGG | - | chr2_1:5450151-5450170 | Msa0190010:intron | 25.0% |
!!! | TTGAAATCTCTTTTTTTCTG+TGG | - | chr2_1:5450443-5450462 | Msa0190010:intron | 25.0% |
! | ACATTAGAACTTAGTTTAGA+AGG | + | chr2_1:5450475-5450494 | None:intergenic | 25.0% |
!! | AACTAAGTTCTAATGTTTGT+AGG | - | chr2_1:5450479-5450498 | Msa0190010:intron | 25.0% |
!! | AAAAATAATGTTTCTGACCA+TGG | + | chr2_1:5450685-5450704 | None:intergenic | 25.0% |
!!! | TTAGTTCTGTTTTATTGTCA+GGG | - | chr2_1:5450739-5450758 | Msa0190010:intron | 25.0% |
! | ATAAATCAACAAACAGCTAA+AGG | + | chr2_1:5450856-5450875 | None:intergenic | 25.0% |
!!! | TTTAGCTGTTTGTTGATTTA+TGG | - | chr2_1:5450855-5450874 | Msa0190010:intron | 25.0% |
! | GAATTGAAGAATGAACTTAA+AGG | + | chr2_1:5450894-5450913 | None:intergenic | 25.0% |
!! | AATACTTTGAAAACAGCTTA+TGG | - | chr2_1:5451242-5451261 | Msa0190010:intron | 25.0% |
! | TCAAATAAGTTATTCGTAAC+AGG | - | chr2_1:5451326-5451345 | Msa0190010:intron | 25.0% |
!! | AGTTGTTATTATCATTGCTA+TGG | - | chr2_1:5451378-5451397 | Msa0190010:intron | 25.0% |
! | TGAAATCAACCAATAAGATA+AGG | - | chr2_1:5451762-5451781 | Msa0190010:intron | 25.0% |
!!! | TCTATTAGCTTTCTTAATAG+TGG | - | chr2_1:5451852-5451871 | Msa0190010:intron | 25.0% |
!! | AAGATTTTCACTTCTTGTTA+AGG | - | chr2_1:5451887-5451906 | Msa0190010:intron | 25.0% |
!! | AGGTACTTAATTCTAGTTAT+CGG | - | chr2_1:5452013-5452032 | Msa0190010:intron | 25.0% |
! | GAAAATAGAAGTAAAAACTC+AGG | + | chr2_1:5452581-5452600 | None:intergenic | 25.0% |
!! | TAAATTTTAGACACACGAAT+TGG | + | chr2_1:5452616-5452635 | None:intergenic | 25.0% |
!! | TGTCTAAAATTTATACCTCT+GGG | - | chr2_1:5452623-5452642 | Msa0190010:exon | 25.0% |
! | GAAAGAGAAAAATTTCATCA+TGG | + | chr2_1:5452789-5452808 | None:intergenic | 25.0% |
! | TGTAATGTTGGTAAACAACA+TGG | + | chr2_1:5449389-5449408 | None:intergenic | 30.0% |
GTGGATAAAGTTTGTAATGT+TGG | + | chr2_1:5449401-5449420 | None:intergenic | 30.0% | |
! | TTTGAGTTTGAGTTCTTCAA+TGG | - | chr2_1:5449545-5449564 | Msa0190010:three_prime_UTR | 30.0% |
TTATAACTGGAAGAGGATAA+AGG | + | chr2_1:5449615-5449634 | None:intergenic | 30.0% | |
AGAAAACAGAGTAAAAACAG+AGG | + | chr2_1:5449661-5449680 | None:intergenic | 30.0% | |
!!! | GTTAATTGAGGTGTTTTTAG+TGG | - | chr2_1:5449853-5449872 | Msa0190010:intron | 30.0% |
ATGAAAAACAGACTTGTGTA+TGG | + | chr2_1:5450068-5450087 | None:intergenic | 30.0% | |
!! | ACAAGTCTGTTTTTCATCAT+TGG | - | chr2_1:5450071-5450090 | Msa0190010:intron | 30.0% |
ATCAAATCAAATAGTGTCTG+TGG | - | chr2_1:5450285-5450304 | Msa0190010:intron | 30.0% | |
TCTTTGTGATCTAAATGTGT+TGG | - | chr2_1:5450315-5450334 | Msa0190010:intron | 30.0% | |
AAAAGAATAGCTGCGAAAAA+TGG | + | chr2_1:5450367-5450386 | None:intergenic | 30.0% | |
ATTGAATTAGGCTTACTGAA+AGG | - | chr2_1:5450410-5450429 | Msa0190010:intron | 30.0% | |
AAGTCAGTGTTCTTCTTTAA+AGG | - | chr2_1:5450504-5450523 | Msa0190010:intron | 30.0% | |
! | TTCTTCTTTAAAGGCTTCTA+TGG | - | chr2_1:5450513-5450532 | Msa0190010:intron | 30.0% |
! | TCTTCTTTAAAGGCTTCTAT+GGG | - | chr2_1:5450514-5450533 | Msa0190010:intron | 30.0% |
ACTTTAGCAGAAGTTAAAGA+CGG | - | chr2_1:5450580-5450599 | Msa0190010:intron | 30.0% | |
!!! | GTTAGTTCTGTTTTATTGTC+AGG | - | chr2_1:5450738-5450757 | Msa0190010:intron | 30.0% |
AAAGACTGAACAATTACCTT+TGG | + | chr2_1:5450806-5450825 | None:intergenic | 30.0% | |
TGAAATCCCAAAATATTGGA+GGG | + | chr2_1:5451006-5451025 | None:intergenic | 30.0% | |
TTGAAATCCCAAAATATTGG+AGG | + | chr2_1:5451007-5451026 | None:intergenic | 30.0% | |
TGGTTGAAATCCCAAAATAT+TGG | + | chr2_1:5451010-5451029 | None:intergenic | 30.0% | |
!!! | AATATTTTGGGATTTCAACC+AGG | - | chr2_1:5451009-5451028 | Msa0190010:intron | 30.0% |
CGAAGTTGTTTATTCAAACA+AGG | + | chr2_1:5451091-5451110 | None:intergenic | 30.0% | |
! | ACTGTTTTCATAAGCTATAC+TGG | - | chr2_1:5451207-5451226 | Msa0190010:intron | 30.0% |
AGAATTAGAAGAAGCAAGTA+GGG | + | chr2_1:5451421-5451440 | None:intergenic | 30.0% | |
CTGCAACAATTTCTATAGAA+AGG | - | chr2_1:5451633-5451652 | Msa0190010:CDS | 30.0% | |
CAACAATTTCTATAGAAAGG+TGG | - | chr2_1:5451636-5451655 | Msa0190010:CDS | 30.0% | |
ATGTCATGACCTTATCTTAT+TGG | + | chr2_1:5451774-5451793 | None:intergenic | 30.0% | |
!!! | ATAGACATTTTTTTTCCTGC+AGG | - | chr2_1:5451910-5451929 | Msa0190010:intron | 30.0% |
! | CAACTTTTGATAAAGCTACA+CGG | + | chr2_1:5452101-5452120 | None:intergenic | 30.0% |
!! | GTGTAGCTTTATCAAAAGTT+GGG | - | chr2_1:5452100-5452119 | Msa0190010:intron | 30.0% |
ATCAAAAGTTGGGTTATTCA+TGG | - | chr2_1:5452110-5452129 | Msa0190010:intron | 30.0% | |
AATGTGTAAATTCACTGTTG+AGG | - | chr2_1:5452234-5452253 | Msa0190010:intron | 30.0% | |
TAAGTAGGTTTACTAAGGAA+TGG | + | chr2_1:5452396-5452415 | None:intergenic | 30.0% | |
GTAACTAAGTAGGTTTACTA+AGG | + | chr2_1:5452401-5452420 | None:intergenic | 30.0% | |
TTCATTTGAGAAATGGACAT+TGG | - | chr2_1:5452492-5452511 | Msa0190010:intron | 30.0% | |
! | GTGTCTAAAATTTATACCTC+TGG | - | chr2_1:5452622-5452641 | Msa0190010:exon | 30.0% |
! | GTTGGTAAACAACATGGAAT+AGG | + | chr2_1:5449383-5449402 | None:intergenic | 35.0% |
! | AAGTATAAAGAGTGTGTGTG+TGG | + | chr2_1:5449420-5449439 | None:intergenic | 35.0% |
TTCCAGTTATAACCCATCAA+GGG | - | chr2_1:5449623-5449642 | Msa0190010:CDS | 35.0% | |
AATGAATGCATACCCTTGAT+GGG | + | chr2_1:5449638-5449657 | None:intergenic | 35.0% | |
ACACCTTAATGCTGTCAAAT+GGG | + | chr2_1:5449778-5449797 | None:intergenic | 35.0% | |
GATTCTTCAAAATTGGTCGT+CGG | + | chr2_1:5449904-5449923 | None:intergenic | 35.0% | |
! | GAATCTTTATGATTGGTCGT+CGG | - | chr2_1:5449919-5449938 | Msa0190010:intron | 35.0% |
GCATACTGATATTGTAACTC+AGG | - | chr2_1:5450006-5450025 | Msa0190010:CDS | 35.0% | |
CTATCTCACTTGTACATCAT+AGG | + | chr2_1:5450037-5450056 | None:intergenic | 35.0% | |
CTATGATGTACAAGTGAGAT+AGG | - | chr2_1:5450035-5450054 | Msa0190010:CDS | 35.0% | |
GTCTTGGATCAAGTGATATA+TGG | + | chr2_1:5450111-5450130 | None:intergenic | 35.0% | |
ACTGAGACTTATTGATCCAA+TGG | - | chr2_1:5450129-5450148 | Msa0190010:intron | 35.0% | |
TGTAAGCTTCAGAAAATCCA+TGG | - | chr2_1:5450665-5450684 | Msa0190010:intron | 35.0% | |
CAAGACTTTCAAACTGTTCA+GGG | + | chr2_1:5450769-5450788 | None:intergenic | 35.0% | |
! | ACTTTTCCAAGAACAGTTCA+TGG | - | chr2_1:5450951-5450970 | Msa0190010:intron | 35.0% |
CAATAACCATGAACTGTTCT+TGG | + | chr2_1:5450960-5450979 | None:intergenic | 35.0% | |
GAAATCCCAAAATATTGGAG+GGG | + | chr2_1:5451005-5451024 | None:intergenic | 35.0% | |
! | TAATTTGGTTCCTACCTTTG+AGG | - | chr2_1:5451059-5451078 | Msa0190010:intron | 35.0% |
! | AAACAGAGTGTTTATGTCAG+TGG | - | chr2_1:5451297-5451316 | Msa0190010:intron | 35.0% |
GTCAATAGAAGTGAAACTTC+AGG | + | chr2_1:5451352-5451371 | None:intergenic | 35.0% | |
GAGAATTAGAAGAAGCAAGT+AGG | + | chr2_1:5451422-5451441 | None:intergenic | 35.0% | |
!! | AATGCAGCATTTGTTTCTGA+GGG | + | chr2_1:5451465-5451484 | None:intergenic | 35.0% |
!! | TAATGCAGCATTTGTTTCTG+AGG | + | chr2_1:5451466-5451485 | None:intergenic | 35.0% |
ATTTGCAGTAAACACTCTTC+TGG | - | chr2_1:5451488-5451507 | Msa0190010:intron | 35.0% | |
AATCATGTCTTGCACTATGT+AGG | + | chr2_1:5451529-5451548 | None:intergenic | 35.0% | |
GAAAGGTGGAATTTAAAGAG+CGG | - | chr2_1:5451650-5451669 | Msa0190010:CDS | 35.0% | |
TATGGAAAGTTAAGCTTCGA+GGG | - | chr2_1:5451675-5451694 | Msa0190010:intron | 35.0% | |
! | GTTGATTTCACTTGTGACTA+TGG | + | chr2_1:5451752-5451771 | None:intergenic | 35.0% |
ATCATCTTGCATACCCATAA+GGG | + | chr2_1:5451984-5452003 | None:intergenic | 35.0% | |
! | CGGTTTTCCTTTTCTTTCTT+TGG | - | chr2_1:5452033-5452052 | Msa0190010:intron | 35.0% |
!! | CGTGTAGCTTTATCAAAAGT+TGG | - | chr2_1:5452099-5452118 | Msa0190010:intron | 35.0% |
AAATGCAAGAGTGAAAACCA+AGG | - | chr2_1:5452136-5452155 | Msa0190010:intron | 35.0% | |
TAAACCTACTTAGTTACCCT+TGG | - | chr2_1:5452404-5452423 | Msa0190010:CDS | 35.0% | |
TTACCCTTGGATCAAAGAAA+AGG | - | chr2_1:5452417-5452436 | Msa0190010:CDS | 35.0% | |
AACGAAGAACTCTCTATTCA+TGG | - | chr2_1:5452445-5452464 | Msa0190010:intron | 35.0% | |
AGAAATGGACATTGGACTAT+AGG | - | chr2_1:5452500-5452519 | Msa0190010:intron | 35.0% | |
GAAATGGACATTGGACTATA+GGG | - | chr2_1:5452501-5452520 | Msa0190010:intron | 35.0% | |
AAATGGACATTGGACTATAG+GGG | - | chr2_1:5452502-5452521 | Msa0190010:intron | 35.0% | |
AAATCTACACACACGTGAAA+TGG | + | chr2_1:5452731-5452750 | None:intergenic | 35.0% | |
AAGGGATCAGAGATTGAAGA+AGG | + | chr2_1:5449576-5449595 | None:intergenic | 40.0% | |
GGTGGAAACTTTGTAGCAAA+GGG | + | chr2_1:5449594-5449613 | None:intergenic | 40.0% | |
AGGTGGAAACTTTGTAGCAA+AGG | + | chr2_1:5449595-5449614 | None:intergenic | 40.0% | |
TAACTGGAAGAGGATAAAGG+TGG | + | chr2_1:5449612-5449631 | None:intergenic | 40.0% | |
!! | TGATGGGTTATAACTGGAAG+AGG | + | chr2_1:5449622-5449641 | None:intergenic | 40.0% |
CTTCCAGTTATAACCCATCA+AGG | - | chr2_1:5449622-5449641 | Msa0190010:CDS | 40.0% | |
!! | TACCCTTGATGGGTTATAAC+TGG | + | chr2_1:5449628-5449647 | None:intergenic | 40.0% |
GAATGAATGCATACCCTTGA+TGG | + | chr2_1:5449639-5449658 | None:intergenic | 40.0% | |
!! | ATTTTAGCCGTAATTTGCGC+AGG | + | chr2_1:5449747-5449766 | None:intergenic | 40.0% |
AGACCCATTTGACAGCATTA+AGG | - | chr2_1:5449772-5449791 | Msa0190010:CDS | 40.0% | |
CACACCTTAATGCTGTCAAA+TGG | + | chr2_1:5449779-5449798 | None:intergenic | 40.0% | |
! | TTTATGATTGGTCGTCGGTT+TGG | - | chr2_1:5449924-5449943 | Msa0190010:intron | 40.0% |
GGATCAATAAGTCTCAGTCT+TGG | + | chr2_1:5450127-5450146 | None:intergenic | 40.0% | |
! | TGATCTAAATGTGTTGGCAC+TGG | - | chr2_1:5450321-5450340 | Msa0190010:intron | 40.0% |
! | TTGAGTTGCTGAGTATATCC+TGG | + | chr2_1:5450544-5450563 | None:intergenic | 40.0% |
GCAAGACTTTCAAACTGTTC+AGG | + | chr2_1:5450770-5450789 | None:intergenic | 40.0% | |
ACAGTTTGAAAGTCTTGCCA+AGG | - | chr2_1:5450772-5450791 | Msa0190010:intron | 40.0% | |
TCTCTCTATTATCCACCTTC+TGG | - | chr2_1:5450825-5450844 | Msa0190010:intron | 40.0% | |
! | GTATGCCCCTCCAATATTTT+GGG | - | chr2_1:5450997-5451016 | Msa0190010:intron | 40.0% |
AATCCGCAACGTTGCTAATT+TGG | - | chr2_1:5451044-5451063 | Msa0190010:intron | 40.0% | |
GAACCAAATTAGCAACGTTG+CGG | + | chr2_1:5451050-5451069 | None:intergenic | 40.0% | |
AAACAAGGCCTATACCTCAA+AGG | + | chr2_1:5451076-5451095 | None:intergenic | 40.0% | |
AAGCTATACTGGAGAGCTTA+TGG | - | chr2_1:5451218-5451237 | Msa0190010:intron | 40.0% | |
! | TCTCTTTTCCTGATACAGAG+TGG | - | chr2_1:5451438-5451457 | Msa0190010:intron | 40.0% |
GGAATTTAAAGAGCGGAGTA+TGG | - | chr2_1:5451657-5451676 | Msa0190010:CDS | 40.0% | |
GTATGGAAAGTTAAGCTTCG+AGG | - | chr2_1:5451674-5451693 | Msa0190010:intron | 40.0% | |
GTTGAGAACATCTTAGTCGT+TGG | - | chr2_1:5451932-5451951 | Msa0190010:intron | 40.0% | |
CATCATCTTGCATACCCATA+AGG | + | chr2_1:5451985-5452004 | None:intergenic | 40.0% | |
CTTATGGGTATGCAAGATGA+TGG | - | chr2_1:5451983-5452002 | Msa0190010:intron | 40.0% | |
TGATCCAAGGGTAACTAAGT+AGG | + | chr2_1:5452411-5452430 | None:intergenic | 40.0% | |
! | CCACCTTTTCTTTGATCCAA+GGG | + | chr2_1:5452423-5452442 | None:intergenic | 40.0% |
! | TCCACCTTTTCTTTGATCCA+AGG | + | chr2_1:5452424-5452443 | None:intergenic | 40.0% |
GAAGAACTCTCTATTCATGG+TGG | - | chr2_1:5452448-5452467 | Msa0190010:intron | 40.0% | |
! | ATCTATGCTTTTAGTCCCAG+AGG | + | chr2_1:5452641-5452660 | None:intergenic | 40.0% |
ACACACACGTGAAATGGTTT+GGG | + | chr2_1:5452725-5452744 | None:intergenic | 40.0% | |
TACACACACGTGAAATGGTT+TGG | + | chr2_1:5452726-5452745 | None:intergenic | 40.0% | |
CTCTGTTCCTGCGCAAATTA+CGG | - | chr2_1:5449737-5449756 | Msa0190010:CDS | 45.0% | |
TTCAAAATTGGTCGTCGGTC+CGG | + | chr2_1:5449899-5449918 | None:intergenic | 45.0% | |
TACCTTTGGCGTTTGAACCT+TGG | + | chr2_1:5450792-5450811 | None:intergenic | 45.0% | |
TTATTGCCTGTGCAGATTCC+AGG | - | chr2_1:5450974-5450993 | Msa0190010:intron | 45.0% | |
TATTGCCTGTGCAGATTCCA+GGG | - | chr2_1:5450975-5450994 | Msa0190010:intron | 45.0% | |
! | GGTATGCCCCTCCAATATTT+TGG | - | chr2_1:5450996-5451015 | Msa0190010:intron | 45.0% |
!! | GGTTCCTACCTTTGAGGTAT+AGG | - | chr2_1:5451065-5451084 | Msa0190010:intron | 45.0% |
AAGGCCTATACCTCAAAGGT+AGG | + | chr2_1:5451072-5451091 | None:intergenic | 45.0% | |
CTAAGATGTTCTCAACCTGC+AGG | + | chr2_1:5451928-5451947 | None:intergenic | 45.0% | |
! | TGCAAGATGATGGCAGTACA+AGG | - | chr2_1:5451993-5452012 | Msa0190010:intron | 45.0% |
CCCTTGGATCAAAGAAAAGG+TGG | - | chr2_1:5452420-5452439 | Msa0190010:CDS | 45.0% | |
GGAACCAAACTGGAGGAAAA+TGG | - | chr2_1:5452523-5452542 | Msa0190010:intron | 45.0% | |
!!! | TCTGCCATTTTCCTCCAGTT+TGG | + | chr2_1:5452530-5452549 | None:intergenic | 45.0% |
CACGAATTGGTAAGTCGATC+AGG | + | chr2_1:5452603-5452622 | None:intergenic | 45.0% | |
CACACACGTGAAATGGTTTG+GGG | + | chr2_1:5452724-5452743 | None:intergenic | 45.0% | |
AAGGCTTCTATGGGATCTCC+AGG | - | chr2_1:5450523-5450542 | Msa0190010:intron | 50.0% | |
TGCCAAGGTTCAAACGCCAA+AGG | - | chr2_1:5450787-5450806 | Msa0190010:intron | 50.0% | |
CTAAAGGCTTAGCCAGAAGG+TGG | + | chr2_1:5450840-5450859 | None:intergenic | 50.0% | |
CAGCTAAAGGCTTAGCCAGA+AGG | + | chr2_1:5450843-5450862 | None:intergenic | 50.0% | |
! | AATATTGGAGGGGCATACCC+TGG | + | chr2_1:5450995-5451014 | None:intergenic | 50.0% |
CGGATTGTAAACGCATCTCC+TGG | + | chr2_1:5451030-5451049 | None:intergenic | 50.0% | |
TACACTGGCGATCAAAGTCG+AGG | + | chr2_1:5452175-5452194 | None:intergenic | 50.0% | |
GGACTATAGGGGAACCAAAC+TGG | - | chr2_1:5452513-5452532 | Msa0190010:intron | 50.0% | |
CTATAGGGGAACCAAACTGG+AGG | - | chr2_1:5452516-5452535 | Msa0190010:intron | 50.0% | |
GCATACCCTGGAATCTGCAC+AGG | + | chr2_1:5450983-5451002 | None:intergenic | 55.0% | |
CTGAGGGTCCACTCTGTATC+AGG | + | chr2_1:5451449-5451468 | None:intergenic | 55.0% | |
CTGGCGATCAAAGTCGAGGT+GGG | + | chr2_1:5452171-5452190 | None:intergenic | 55.0% | |
ACTGGCGATCAAAGTCGAGG+TGG | + | chr2_1:5452172-5452191 | None:intergenic | 55.0% | |
CCTTCTCGCAATGCGTACAC+TGG | + | chr2_1:5452190-5452209 | None:intergenic | 55.0% | |
CCAGTGTACGCATTGCGAGA+AGG | - | chr2_1:5452187-5452206 | Msa0190010:intron | 55.0% | |
TCGTTGGCCACAGCTGCTGT+GGG | - | chr2_1:5451948-5451967 | Msa0190010:intron | 60.0% | |
GTATACCCCCACAGCAGCTG+TGG | + | chr2_1:5451958-5451977 | None:intergenic | 60.0% | |
! | TGGGGGTATACGCGCCCTTA+TGG | - | chr2_1:5451967-5451986 | Msa0190010:intron | 60.0% |
! | GGGGGTATACGCGCCCTTAT+GGG | - | chr2_1:5451968-5451987 | Msa0190010:intron | 60.0% |
GAGGTGGGAAGCAGAAGCCT+TGG | + | chr2_1:5452156-5452175 | None:intergenic | 60.0% | |
GTCGTTGGCCACAGCTGCTG+TGG | - | chr2_1:5451947-5451966 | Msa0190010:intron | 65.0% | |
CGTTGGCCACAGCTGCTGTG+GGG | - | chr2_1:5451949-5451968 | Msa0190010:intron | 65.0% | |
GTTGGCCACAGCTGCTGTGG+GGG | - | chr2_1:5451950-5451969 | Msa0190010:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 5449374 | 5452816 | 5449374 | ID=Msa0190010;Name=Msa0190010 |
chr2_1 | mRNA | 5449374 | 5452816 | 5449374 | ID=Msa0190010-mRNA-1;Parent=Msa0190010;Name=Msa0190010-mRNA-1;_AED=0.11;_eAED=0.11;_QI=190|0.85|1|1|1|1|8|234|264 |
chr2_1 | exon | 5449374 | 5449808 | 5449374 | ID=Msa0190010-mRNA-1:exon:2456;Parent=Msa0190010-mRNA-1 |
chr2_1 | exon | 5449982 | 5450084 | 5449982 | ID=Msa0190010-mRNA-1:exon:2455;Parent=Msa0190010-mRNA-1 |
chr2_1 | exon | 5450176 | 5450258 | 5450176 | ID=Msa0190010-mRNA-1:exon:2454;Parent=Msa0190010-mRNA-1 |
chr2_1 | exon | 5450681 | 5450734 | 5450681 | ID=Msa0190010-mRNA-1:exon:2453;Parent=Msa0190010-mRNA-1 |
chr2_1 | exon | 5451382 | 5451430 | 5451382 | ID=Msa0190010-mRNA-1:exon:2452;Parent=Msa0190010-mRNA-1 |
chr2_1 | exon | 5451525 | 5451689 | 5451525 | ID=Msa0190010-mRNA-1:exon:2451;Parent=Msa0190010-mRNA-1 |
chr2_1 | exon | 5452397 | 5452455 | 5452397 | ID=Msa0190010-mRNA-1:exon:2450;Parent=Msa0190010-mRNA-1 |
chr2_1 | exon | 5452546 | 5452816 | 5452546 | ID=Msa0190010-mRNA-1:exon:2449;Parent=Msa0190010-mRNA-1 |
chr2_1 | five_prime_UTR | 5452627 | 5452816 | 5452627 | ID=Msa0190010-mRNA-1:five_prime_utr;Parent=Msa0190010-mRNA-1 |
chr2_1 | CDS | 5452546 | 5452626 | 5452546 | ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1 |
chr2_1 | CDS | 5452397 | 5452455 | 5452397 | ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1 |
chr2_1 | CDS | 5451525 | 5451689 | 5451525 | ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1 |
chr2_1 | CDS | 5451382 | 5451430 | 5451382 | ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1 |
chr2_1 | CDS | 5450681 | 5450734 | 5450681 | ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1 |
chr2_1 | CDS | 5450176 | 5450258 | 5450176 | ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1 |
chr2_1 | CDS | 5449982 | 5450084 | 5449982 | ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1 |
chr2_1 | CDS | 5449608 | 5449808 | 5449608 | ID=Msa0190010-mRNA-1:cds;Parent=Msa0190010-mRNA-1 |
chr2_1 | three_prime_UTR | 5449374 | 5449607 | 5449374 | ID=Msa0190010-mRNA-1:three_prime_utr;Parent=Msa0190010-mRNA-1 |
Gene Sequence |
Protein sequence |