Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0307760 | XP_003593260.1 | 84.106 | 302 | 10 | 1 | 1 | 264 | 1 | 302 | 0.0 | 513 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0307760 | sp|Q94CE3|BCA5_ARATH | 47.059 | 272 | 94 | 6 | 37 | 264 | 36 | 301 | 2.00e-73 | 229 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0053480 | Msa0307760 | 0.824920 | 6.212925e-54 | -8.615850e-47 |
Msa0093440 | Msa0307760 | 0.806213 | 9.176157e-50 | -8.615850e-47 |
Msa0190010 | Msa0307760 | 0.828378 | 9.297017e-55 | -8.615850e-47 |
Msa0207530 | Msa0307760 | 0.810492 | 1.122098e-50 | -8.615850e-47 |
Msa0207900 | Msa0307760 | 0.820663 | 6.088518e-53 | -8.615850e-47 |
Msa0307760 | Msa0365360 | 0.808588 | 2.876557e-50 | -8.615850e-47 |
Msa0307760 | Msa0416800 | 0.805488 | 1.303267e-49 | -8.615850e-47 |
Msa0307760 | Msa0434890 | -0.804783 | 1.829850e-49 | -8.615850e-47 |
Msa0307760 | Msa0498920 | 0.804920 | 1.713720e-49 | -8.615850e-47 |
Msa0307760 | Msa0563140 | 0.807349 | 5.279299e-50 | -8.615850e-47 |
Msa0307760 | Msa0664110 | 0.800547 | 1.369119e-48 | -8.615850e-47 |
Msa0307760 | Msa0664130 | 0.808210 | 3.464073e-50 | -8.615850e-47 |
Msa0307760 | Msa0709820 | -0.802088 | 6.622517e-49 | -8.615850e-47 |
Msa0307760 | Msa0887000 | 0.846369 | 2.268351e-59 | -8.615850e-47 |
Msa0307760 | Msa0907900 | 0.998068 | 2.168378e-255 | -8.615850e-47 |
Msa0307760 | Msa0988500 | 0.809179 | 2.149930e-50 | -8.615850e-47 |
Msa0307760 | Msa1018720 | 0.807302 | 5.400401e-50 | -8.615850e-47 |
Msa0307760 | Msa1041770 | 0.814149 | 1.784182e-51 | -8.615850e-47 |
Msa0307760 | Msa1044450 | 0.801906 | 7.217024e-49 | -8.615850e-47 |
Msa0307760 | Msa1080280 | 0.812804 | 3.525118e-51 | -8.615850e-47 |
Msa0307760 | Msa1125050 | 0.838199 | 3.314283e-57 | -8.615850e-47 |
Msa0307760 | Msa1151970 | 0.816060 | 6.719671e-52 | -8.615850e-47 |
Msa0307760 | Msa1287340 | 0.800354 | 1.498992e-48 | -8.615850e-47 |
Msa0307760 | Msa1430930 | 0.988874 | 9.218585e-176 | -8.615850e-47 |
Msa0307760 | Msa1439160 | 0.834378 | 3.103183e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0307760 | MtrunA17_Chr2g0279581 | 84.106 | 302 | 10 | 1 | 1 | 264 | 1 | 302 | 0.0 | 513 |
Msa0307760 | MtrunA17_Chr5g0427341 | 41.639 | 305 | 124 | 8 | 7 | 263 | 10 | 308 | 5.05e-67 | 210 |
Msa0307760 | MtrunA17_Chr8g0365441 | 32.714 | 269 | 119 | 5 | 18 | 245 | 1 | 248 | 6.88e-41 | 141 |
Msa0307760 | MtrunA17_Chr5g0413551 | 37.037 | 216 | 92 | 3 | 73 | 244 | 33 | 248 | 9.73e-41 | 141 |
Msa0307760 | MtrunA17_Chr6g0450641 | 34.413 | 247 | 109 | 4 | 39 | 244 | 89 | 323 | 2.70e-38 | 136 |
Msa0307760 | MtrunA17_Chr3g0117661 | 38.220 | 191 | 77 | 3 | 91 | 240 | 55 | 245 | 3.09e-35 | 127 |
Msa0307760 | MtrunA17_Chr3g0117691 | 47.934 | 121 | 61 | 1 | 122 | 240 | 125 | 245 | 2.97e-33 | 121 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0307760 | AT4G33580.3 | 47.059 | 272 | 94 | 6 | 37 | 264 | 36 | 301 | 2.04e-74 | 229 |
Msa0307760 | AT4G33580.1 | 47.059 | 272 | 94 | 6 | 37 | 264 | 36 | 301 | 2.04e-74 | 229 |
Msa0307760 | AT4G33580.2 | 46.520 | 273 | 95 | 7 | 37 | 264 | 36 | 302 | 1.63e-72 | 224 |
Msa0307760 | AT1G58180.7 | 41.206 | 199 | 77 | 2 | 84 | 242 | 23 | 221 | 1.33e-50 | 166 |
Msa0307760 | AT1G58180.3 | 41.206 | 199 | 77 | 2 | 84 | 242 | 23 | 221 | 1.33e-50 | 166 |
Msa0307760 | AT1G58180.6 | 41.206 | 199 | 77 | 2 | 84 | 242 | 23 | 221 | 1.33e-50 | 166 |
Msa0307760 | AT1G58180.2 | 41.206 | 199 | 77 | 2 | 84 | 242 | 74 | 272 | 2.60e-50 | 167 |
Msa0307760 | AT1G58180.4 | 41.206 | 199 | 77 | 2 | 84 | 242 | 74 | 272 | 2.60e-50 | 167 |
Msa0307760 | AT1G23730.2 | 37.327 | 217 | 94 | 2 | 73 | 247 | 36 | 252 | 6.49e-44 | 149 |
Msa0307760 | AT1G23730.1 | 37.327 | 217 | 94 | 2 | 73 | 247 | 36 | 252 | 6.49e-44 | 149 |
Msa0307760 | AT1G70410.3 | 38.140 | 215 | 91 | 3 | 75 | 247 | 38 | 252 | 4.52e-42 | 145 |
Msa0307760 | AT1G70410.1 | 38.140 | 215 | 91 | 3 | 75 | 247 | 38 | 252 | 4.52e-42 | 145 |
Msa0307760 | AT1G70410.2 | 38.140 | 215 | 91 | 3 | 75 | 247 | 60 | 274 | 1.14e-41 | 144 |
Msa0307760 | AT1G58180.1 | 39.326 | 178 | 68 | 2 | 84 | 221 | 74 | 251 | 4.45e-40 | 139 |
Msa0307760 | AT5G14740.9 | 38.614 | 202 | 83 | 3 | 84 | 244 | 50 | 251 | 1.09e-36 | 131 |
Msa0307760 | AT5G14740.8 | 38.614 | 202 | 83 | 3 | 84 | 244 | 50 | 251 | 1.09e-36 | 131 |
Msa0307760 | AT5G14740.7 | 38.614 | 202 | 83 | 3 | 84 | 244 | 50 | 251 | 1.09e-36 | 131 |
Msa0307760 | AT5G14740.2 | 38.614 | 202 | 83 | 3 | 84 | 244 | 50 | 251 | 1.09e-36 | 131 |
Msa0307760 | AT5G14740.6 | 38.614 | 202 | 83 | 3 | 84 | 244 | 50 | 251 | 1.09e-36 | 131 |
Msa0307760 | AT5G14740.1 | 38.614 | 202 | 83 | 3 | 84 | 244 | 122 | 323 | 5.17e-36 | 131 |
Msa0307760 | AT3G01500.4 | 36.634 | 202 | 87 | 3 | 84 | 244 | 50 | 251 | 1.02e-34 | 125 |
Msa0307760 | AT3G01500.1 | 36.634 | 202 | 87 | 3 | 84 | 244 | 50 | 251 | 1.80e-34 | 125 |
Msa0307760 | AT3G01500.3 | 36.634 | 202 | 87 | 3 | 84 | 244 | 127 | 328 | 2.32e-34 | 127 |
Msa0307760 | AT3G01500.2 | 36.634 | 202 | 87 | 3 | 84 | 244 | 127 | 328 | 3.92e-34 | 126 |
Msa0307760 | AT5G14740.4 | 38.119 | 202 | 83 | 4 | 84 | 244 | 122 | 322 | 1.51e-33 | 124 |
Msa0307760 | AT5G14740.3 | 38.119 | 202 | 83 | 4 | 84 | 244 | 122 | 322 | 5.52e-33 | 123 |
Msa0307760 | AT1G58180.5 | 38.710 | 155 | 55 | 2 | 84 | 198 | 74 | 228 | 5.37e-30 | 114 |
Msa0307760 | AT5G14740.5 | 33.974 | 156 | 62 | 3 | 84 | 198 | 122 | 277 | 1.53e-15 | 75.5 |
Find 78 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGTCAGTGTTCTTCTTTAA+AGG | 0.218106 | 2_4:-900227 | Msa0307760:CDS |
TTCTTCTTTAAAGGCTTCTA+TGG | 0.218623 | 2_4:-900218 | Msa0307760:CDS |
GCAAGACTTTCAAACTGTTC+AGG | 0.276705 | 2_4:+899964 | None:intergenic |
GAAATGGACATTGGACTATA+GGG | 0.318375 | 2_4:-898229 | Msa0307760:CDS |
ATCAAAAGTTGGGTTATTCA+TGG | 0.325701 | 2_4:-898620 | Msa0307760:CDS |
ATTTGCAGTAAACACTCTTC+TGG | 0.333907 | 2_4:-899243 | Msa0307760:intron |
CGTGTAGCTTTATCAAAAGT+TGG | 0.339113 | 2_4:-898631 | Msa0307760:intron |
AGAAATGGACATTGGACTAT+AGG | 0.342791 | 2_4:-898230 | Msa0307760:CDS |
TTAATTGTTCATTTGAGAAA+TGG | 0.357926 | 2_4:-898245 | Msa0307760:CDS |
CTCTGTTCCTGCGCAAATTA+CGG | 0.359512 | 2_4:-900992 | Msa0307760:CDS |
GTTGGTAAACAACATGGAAT+AGG | 0.359886 | 2_4:+901349 | None:intergenic |
AGACCCATTTGACAGCATTA+AGG | 0.363149 | 2_4:-900957 | Msa0307760:intron |
TACCCTTGATGGGTTATAAC+TGG | 0.371016 | 2_4:+901104 | None:intergenic |
GGACTATAGGGGAACCAAAC+TGG | 0.385882 | 2_4:-898217 | Msa0307760:CDS |
GTGTCTAAAATTTATACCTC+TGG | 0.386177 | 2_4:-898108 | Msa0307760:three_prime_UTR |
TACACACACGTGAAATGGTT+GGG | 0.395069 | 2_4:+898008 | None:intergenic |
CAAGACTTTCAAACTGTTCA+GGG | 0.397042 | 2_4:+899965 | None:intergenic |
AAATCTACACACACGTGAAA+TGG | 0.407565 | 2_4:+898003 | None:intergenic |
GAATGAATGCATACCCTTGA+TGG | 0.407802 | 2_4:+901093 | None:intergenic |
CACACCTTAATGCTGTCAAA+TGG | 0.409752 | 2_4:+900953 | None:intergenic |
TTTGAGTTTGAGTTCTTCAA+TGG | 0.413777 | 2_4:-901184 | Msa0307760:exon |
GGAACCAAACTGGAGGAAAA+TGG | 0.421310 | 2_4:-898207 | Msa0307760:CDS |
ATCATCTTGCATACCCATAA+GGG | 0.424264 | 2_4:+898749 | None:intergenic |
CATCATCTTGCATACCCATA+AGG | 0.436099 | 2_4:+898748 | None:intergenic |
TGATCCAAGGGTAACTAAGT+AGG | 0.442764 | 2_4:+898322 | None:intergenic |
TAAACCTACTTAGTTACCCT+TGG | 0.445262 | 2_4:-898326 | Msa0307760:CDS |
TTATAACTGGAAGAGGATAA+AGG | 0.445717 | 2_4:+901117 | None:intergenic |
AACGAAGAACTCTCTATTCA+TGG | 0.451547 | 2_4:-898285 | Msa0307760:CDS |
TCGTTGGCCACAGCTGCTGT+GGG | 0.452907 | 2_4:-898782 | Msa0307760:CDS |
GTCGTTGGCCACAGCTGCTG+TGG | 0.460065 | 2_4:-898783 | Msa0307760:CDS |
GTGTAGCTTTATCAAAAGTT+GGG | 0.461410 | 2_4:-898630 | Msa0307760:intron |
GTGGATAAAGTTTGTAATGT+TGG | 0.462582 | 2_4:+901331 | None:intergenic |
GGTGGAAACTTTGTAGCAAA+GGG | 0.463259 | 2_4:+901138 | None:intergenic |
CACGAATTGGTAAGTCGATC+AGG | 0.466661 | 2_4:+898130 | None:intergenic |
ACACCTTAATGCTGTCAAAT+GGG | 0.471844 | 2_4:+900954 | None:intergenic |
AAGGCTTCTATGGGATCTCC+AGG | 0.478157 | 2_4:-900208 | Msa0307760:CDS |
TCTTCTTTAAAGGCTTCTAT+GGG | 0.484512 | 2_4:-900217 | Msa0307760:CDS |
TTCATTTGAGAAATGGACAT+TGG | 0.487217 | 2_4:-898238 | Msa0307760:CDS |
GAAAGAGTTATAAACATAGT+TGG | 0.488329 | 2_4:+901226 | None:intergenic |
CTTCCAGTTATAACCCATCA+AGG | 0.490907 | 2_4:-901107 | Msa0307760:CDS |
TTACCCTTGGATCAAAGAAA+AGG | 0.495682 | 2_4:-898313 | Msa0307760:CDS |
TAATGCAGCATTTGTTTCTG+AGG | 0.502192 | 2_4:+899268 | None:intergenic |
AATGCAGCATTTGTTTCTGA+GGG | 0.509806 | 2_4:+899269 | None:intergenic |
GTAACTAAGTAGGTTTACTA+AGG | 0.516928 | 2_4:+898332 | None:intergenic |
AGGTGGAAACTTTGTAGCAA+AGG | 0.522465 | 2_4:+901137 | None:intergenic |
TGATGGGTTATAACTGGAAG+AGG | 0.525265 | 2_4:+901110 | None:intergenic |
TAAGTAGGTTTACTAAGGAA+TGG | 0.532715 | 2_4:+898337 | None:intergenic |
TGTCTAAAATTTATACCTCT+GGG | 0.538011 | 2_4:-898107 | Msa0307760:three_prime_UTR |
AAGGGATCAGAGATTGAAGA+AGG | 0.543725 | 2_4:+901156 | None:intergenic |
TTAAGTTGCTGAGTAAAACC+TGG | 0.546444 | 2_4:+900190 | None:intergenic |
ACACACACGTGAAATGGTTG+GGG | 0.562708 | 2_4:+898009 | None:intergenic |
CTACACACACGTGAAATGGT+TGG | 0.563505 | 2_4:+898007 | None:intergenic |
CTTATGGGTATGCAAGATGA+TGG | 0.564663 | 2_4:-898747 | Msa0307760:CDS |
TACCTTTGGAGTTTGAACCT+TGG | 0.567951 | 2_4:+899942 | None:intergenic |
AATGAATGCATACCCTTGAT+GGG | 0.569966 | 2_4:+901094 | None:intergenic |
GAGGTGGGAAGCAGAAGCCT+TGG | 0.571080 | 2_4:+898577 | None:intergenic |
GTTGAGAACATCTTAGTCGT+TGG | 0.572846 | 2_4:-898798 | Msa0307760:CDS |
GTTGGCCACAGCTGCTGTGG+GGG | 0.577076 | 2_4:-898780 | Msa0307760:CDS |
CCCTTGGATCAAAGAAAAGG+TGG | 0.580841 | 2_4:-898310 | Msa0307760:CDS |
ACAGTTTGAAAGTCTTGCCA+AGG | 0.582237 | 2_4:-899959 | Msa0307760:CDS |
TGATATATTTAACGATCTGA+AGG | 0.584958 | 2_4:-900122 | Msa0307760:CDS |
CCTTCTCGCAATGCGTACAC+TGG | 0.586303 | 2_4:+898543 | None:intergenic |
TGCAAGATGATGGCAGTACA+AGG | 0.586853 | 2_4:-898737 | Msa0307760:intron |
CGTTGGCCACAGCTGCTGTG+GGG | 0.598268 | 2_4:-898781 | Msa0307760:CDS |
CCAGTGTACGCATTGCGAGA+AGG | 0.600622 | 2_4:-898543 | Msa0307760:intron |
TGTAATGTTGGTAAACAACA+TGG | 0.613132 | 2_4:+901343 | None:intergenic |
ACTTTAGCTGAAGTTAAAGA+CGG | 0.618046 | 2_4:-900151 | Msa0307760:CDS |
AAGTATAAAGAGTGTGTGTG+TGG | 0.621516 | 2_4:+901312 | None:intergenic |
TGCCAAGGTTCAAACTCCAA+AGG | 0.633339 | 2_4:-899944 | Msa0307760:intron |
CTGGCGATCAAAGTCGAGGT+GGG | 0.637149 | 2_4:+898562 | None:intergenic |
TTCCAGTTATAACCCATCAA+GGG | 0.637369 | 2_4:-901106 | Msa0307760:intron |
AAATGGACATTGGACTATAG+GGG | 0.637668 | 2_4:-898228 | Msa0307760:CDS |
ACTGGCGATCAAAGTCGAGG+TGG | 0.654998 | 2_4:+898561 | None:intergenic |
TAACTGGAAGAGGATAAAGG+TGG | 0.660641 | 2_4:+901120 | None:intergenic |
TACACTGGCGATCAAAGTCG+AGG | 0.668978 | 2_4:+898558 | None:intergenic |
AAATGCAAGAGTGAAAACCA+AGG | 0.707710 | 2_4:-898594 | Msa0307760:CDS |
CTATAGGGGAACCAAACTGG+AGG | 0.709599 | 2_4:-898214 | Msa0307760:CDS |
GAAGAACTCTCTATTCATGG+TGG | 0.732574 | 2_4:-898282 | Msa0307760:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAATTAATCAAAAATTGA+GGG | + | chr2_4:898018-898037 | None:intergenic | 10.0% |
!!! | TTAAATTGTTTTTATATTAC+AGG | - | chr2_4:900922-900941 | Msa0307760:intron | 10.0% |
!! | GATTAATTAATCAAAAATTG+AGG | + | chr2_4:898019-898038 | None:intergenic | 15.0% |
!! | ACAAAAAAGAACAAAAATTT+GGG | + | chr2_4:898367-898386 | None:intergenic | 15.0% |
!! | AACAAAAAAGAACAAAAATT+TGG | + | chr2_4:898368-898387 | None:intergenic | 15.0% |
!! | TATCAAACAATTAAATTACA+AGG | + | chr2_4:898767-898786 | None:intergenic | 15.0% |
!! | TTACAATTATAAAAGAATGT+TGG | - | chr2_4:900144-900163 | Msa0307760:CDS | 15.0% |
!!! | CTACAAAAAATAAAGTATTT+TGG | - | chr2_4:901116-901135 | Msa0307760:CDS | 15.0% |
!!! | TCGAACTTTTTTTTAAAACT+CGG | + | chr2_4:898515-898534 | None:intergenic | 20.0% |
!!! | AAAAATTTGTTTTTCACCAT+TGG | + | chr2_4:898712-898731 | None:intergenic | 20.0% |
!! | AAATTGAAGAATGAACTTAA+AGG | + | chr2_4:899455-899474 | None:intergenic | 20.0% |
!! | ACAGAAATAACTTATATAAG+CGG | + | chr2_4:899709-899728 | None:intergenic | 20.0% |
!!! | CATTCTTTTATAATTGTAAC+AGG | + | chr2_4:900143-900162 | None:intergenic | 20.0% |
!! | ATTTATACCAAAGAAAGAAA+AGG | + | chr2_4:900605-900624 | None:intergenic | 20.0% |
!! | ATTGAATGATATGAACTATT+AGG | - | chr2_4:900828-900847 | Msa0307760:intron | 20.0% |
!! | TTACATAATCAAGTTCTTAT+GGG | + | chr2_4:900880-900899 | None:intergenic | 20.0% |
!! | TTTACATAATCAAGTTCTTA+TGG | + | chr2_4:900881-900900 | None:intergenic | 20.0% |
!! | TTAATTGTTCATTTGAGAAA+TGG | - | chr2_4:901047-901066 | Msa0307760:intron | 20.0% |
! | GAAAGAGTTATAAACATAGT+TGG | + | chr2_4:898069-898088 | None:intergenic | 25.0% |
! | TGCTTTCTTTATGTTAATTG+AGG | - | chr2_4:898404-898423 | Msa0307760:intron | 25.0% |
! | TATTAAGTTTGTATCTTCAC+CGG | - | chr2_4:898440-898459 | Msa0307760:intron | 25.0% |
! | AAAAAAAAGTTCGAATCTTC+AGG | - | chr2_4:898521-898540 | Msa0307760:intron | 25.0% |
!! | ACGAAAAACAAATTTTTGCA+TGG | + | chr2_4:898632-898651 | None:intergenic | 25.0% |
!!! | AAAAATTTGTTTTTCGTCAC+TGG | - | chr2_4:898635-898654 | Msa0307760:intron | 25.0% |
!! | GTGAAAAACAAATTTTTGCA+TGG | - | chr2_4:898715-898734 | Msa0307760:intron | 25.0% |
! | TCTTTGTGATCTAAATATGT+TGG | - | chr2_4:898875-898894 | Msa0307760:intron | 25.0% |
! | AAAAGAATAGCTGCAAAAAA+TGG | + | chr2_4:898927-898946 | None:intergenic | 25.0% |
! | TAGAAACATTTAGTTGAATC+AGG | - | chr2_4:898958-898977 | Msa0307760:intron | 25.0% |
!! | ACATTAGAACTTTGTTTAGA+AGG | + | chr2_4:899036-899055 | None:intergenic | 25.0% |
! | TGATATATTTAACGATCTGA+AGG | - | chr2_4:899170-899189 | Msa0307760:intron | 25.0% |
!! | GAAAATAATGTTTCTAACCA+TGG | + | chr2_4:899246-899265 | None:intergenic | 25.0% |
!! | AATACTTTGAAAACAGCTTA+TGG | - | chr2_4:899803-899822 | Msa0307760:intron | 25.0% |
! | TCAAATAAGTTATTCGTAAC+AGG | - | chr2_4:899887-899906 | Msa0307760:intron | 25.0% |
!! | AGTTGTTATTATCATTGCTA+TGG | - | chr2_4:899939-899958 | Msa0307760:intron | 25.0% |
! | TGAAATCAACCAATAAGATA+AGG | - | chr2_4:900324-900343 | Msa0307760:intron | 25.0% |
!!! | TCTATTAGCTTTCTTAATAG+TGG | - | chr2_4:900414-900433 | Msa0307760:intron | 25.0% |
!! | AAGATTTTCACTTCTTGTTA+AGG | - | chr2_4:900449-900468 | Msa0307760:intron | 25.0% |
!! | AGGTACTTAATTCTAGTTAT+CGG | - | chr2_4:900575-900594 | Msa0307760:intron | 25.0% |
! | GAAAATAGAAGTAAAAACTC+AGG | + | chr2_4:901143-901162 | None:intergenic | 25.0% |
!! | TAAATTTTAGACACACGAAT+TGG | + | chr2_4:901178-901197 | None:intergenic | 25.0% |
!! | TGTCTAAAATTTATACCTCT+GGG | - | chr2_4:901185-901204 | Msa0307760:exon | 25.0% |
! | GAAAGAGAAAAATTTCATCA+TGG | + | chr2_4:901350-901369 | None:intergenic | 25.0% |
! | TGTAATGTTGGTAAACAACA+TGG | + | chr2_4:897952-897971 | None:intergenic | 30.0% |
GTGGATAAAGTTTGTAATGT+TGG | + | chr2_4:897964-897983 | None:intergenic | 30.0% | |
! | TTTGAGTTTGAGTTCTTCAA+TGG | - | chr2_4:898108-898127 | Msa0307760:three_prime_UTR | 30.0% |
TTATAACTGGAAGAGGATAA+AGG | + | chr2_4:898178-898197 | None:intergenic | 30.0% | |
AGAAAACAGAGTAAAAACAG+AGG | + | chr2_4:898224-898243 | None:intergenic | 30.0% | |
!!! | GTTAATTGAGGTGTTTTTAG+TGG | - | chr2_4:898416-898435 | Msa0307760:intron | 30.0% |
GCATACTGATATTGTAATTC+AGG | - | chr2_4:898568-898587 | Msa0307760:CDS | 30.0% | |
TGATAAAATCCAATAGTCTG+TGG | - | chr2_4:898839-898858 | Msa0307760:intron | 30.0% | |
!!! | TGAAATCTCTCTTTTTTCTG+TGG | - | chr2_4:899004-899023 | Msa0307760:intron | 30.0% |
! | AACAAAGTTCTAATGTTTGC+AGG | - | chr2_4:899040-899059 | Msa0307760:intron | 30.0% |
AAGTCAGTGTTCTTCTTTAA+AGG | - | chr2_4:899065-899084 | Msa0307760:intron | 30.0% | |
! | TTCTTCTTTAAAGGCTTCTA+TGG | - | chr2_4:899074-899093 | Msa0307760:intron | 30.0% |
! | TCTTCTTTAAAGGCTTCTAT+GGG | - | chr2_4:899075-899094 | Msa0307760:intron | 30.0% |
ACTTTAGCTGAAGTTAAAGA+CGG | - | chr2_4:899141-899160 | Msa0307760:intron | 30.0% | |
TGTAAGCTTCATAAAATCCA+TGG | - | chr2_4:899226-899245 | Msa0307760:intron | 30.0% | |
!!! | GTTAGTTCTGTTTTATTGTC+AGG | - | chr2_4:899299-899318 | Msa0307760:intron | 30.0% |
AAAGACAGAACAATTACCTT+TGG | + | chr2_4:899367-899386 | None:intergenic | 30.0% | |
ATAAATCAACAAACAGCTGA+AGG | + | chr2_4:899417-899436 | None:intergenic | 30.0% | |
TGAAATCCCAAAATATTGGA+GGG | + | chr2_4:899567-899586 | None:intergenic | 30.0% | |
TTGAAATCCCAAAATATTGG+AGG | + | chr2_4:899568-899587 | None:intergenic | 30.0% | |
TGGTTGAAATCCCAAAATAT+TGG | + | chr2_4:899571-899590 | None:intergenic | 30.0% | |
!!! | AATATTTTGGGATTTCAACC+AGG | - | chr2_4:899570-899589 | Msa0307760:intron | 30.0% |
CGAAGTTGTTTATTCAAACA+AGG | + | chr2_4:899652-899671 | None:intergenic | 30.0% | |
! | ACTGTTTTCATAAGCTATAC+TGG | - | chr2_4:899768-899787 | Msa0307760:intron | 30.0% |
AGAATTAGAAGAAGCAAGTA+GGG | + | chr2_4:899982-900001 | None:intergenic | 30.0% | |
CTGCAACAATTTCTATAGAA+AGG | - | chr2_4:900194-900213 | Msa0307760:CDS | 30.0% | |
CAACAATTTCTATAGAAAGG+TGG | - | chr2_4:900197-900216 | Msa0307760:CDS | 30.0% | |
ATGTCATGACCTTATCTTAT+TGG | + | chr2_4:900336-900355 | None:intergenic | 30.0% | |
! | ATAGACATTTTTATTCCTGC+AGG | - | chr2_4:900472-900491 | Msa0307760:intron | 30.0% |
! | CAACTTTTGATAAAGCTACA+CGG | + | chr2_4:900663-900682 | None:intergenic | 30.0% |
!! | GTGTAGCTTTATCAAAAGTT+GGG | - | chr2_4:900662-900681 | Msa0307760:intron | 30.0% |
ATCAAAAGTTGGGTTATTCA+TGG | - | chr2_4:900672-900691 | Msa0307760:intron | 30.0% | |
AATGTGTAAATTCACTGTTG+AGG | - | chr2_4:900796-900815 | Msa0307760:intron | 30.0% | |
TAAGTAGGTTTACTAAGGAA+TGG | + | chr2_4:900958-900977 | None:intergenic | 30.0% | |
GTAACTAAGTAGGTTTACTA+AGG | + | chr2_4:900963-900982 | None:intergenic | 30.0% | |
TTCATTTGAGAAATGGACAT+TGG | - | chr2_4:901054-901073 | Msa0307760:intron | 30.0% | |
! | GTGTCTAAAATTTATACCTC+TGG | - | chr2_4:901184-901203 | Msa0307760:exon | 30.0% |
! | GTTGGTAAACAACATGGAAT+AGG | + | chr2_4:897946-897965 | None:intergenic | 35.0% |
! | AAGTATAAAGAGTGTGTGTG+TGG | + | chr2_4:897983-898002 | None:intergenic | 35.0% |
TTCCAGTTATAACCCATCAA+GGG | - | chr2_4:898186-898205 | Msa0307760:CDS | 35.0% | |
AATGAATGCATACCCTTGAT+GGG | + | chr2_4:898201-898220 | None:intergenic | 35.0% | |
ACACCTTAATGCTGTCAAAT+GGG | + | chr2_4:898341-898360 | None:intergenic | 35.0% | |
ATCATGAAGATTCTCAGGAT+TGG | + | chr2_4:898474-898493 | None:intergenic | 35.0% | |
ATCCTGAGAATCTTCATGAT+TGG | - | chr2_4:898474-898493 | Msa0307760:intron | 35.0% | |
TGATCTAAATATGTTGGCAC+TGG | - | chr2_4:898881-898900 | Msa0307760:intron | 35.0% | |
GTTGAATCAGGCTTATTGAA+AGG | - | chr2_4:898970-898989 | Msa0307760:intron | 35.0% | |
! | TTAAGTTGCTGAGTAAAACC+TGG | + | chr2_4:899105-899124 | None:intergenic | 35.0% |
CAAGACTTTCAAACTGTTCA+GGG | + | chr2_4:899330-899349 | None:intergenic | 35.0% | |
! | ACTTTTCCAAGAACAGTTCA+TGG | - | chr2_4:899512-899531 | Msa0307760:intron | 35.0% |
CAATAACCATGAACTGTTCT+TGG | + | chr2_4:899521-899540 | None:intergenic | 35.0% | |
GAAATCCCAAAATATTGGAG+GGG | + | chr2_4:899566-899585 | None:intergenic | 35.0% | |
AATCCGCAATGTTGCTAATT+TGG | - | chr2_4:899605-899624 | Msa0307760:intron | 35.0% | |
GAACCAAATTAGCAACATTG+CGG | + | chr2_4:899611-899630 | None:intergenic | 35.0% | |
! | TAATTTGGTTCCTACCTTTG+AGG | - | chr2_4:899620-899639 | Msa0307760:intron | 35.0% |
! | AAACAGAGTGTTTATGTCAG+TGG | - | chr2_4:899858-899877 | Msa0307760:intron | 35.0% |
GTCAATAGAAGTGAAACTTC+AGG | + | chr2_4:899913-899932 | None:intergenic | 35.0% | |
GAGAATTAGAAGAAGCAAGT+AGG | + | chr2_4:899983-900002 | None:intergenic | 35.0% | |
!! | AATGCAGCATTTGTTTCTGA+GGG | + | chr2_4:900026-900045 | None:intergenic | 35.0% |
!! | TAATGCAGCATTTGTTTCTG+AGG | + | chr2_4:900027-900046 | None:intergenic | 35.0% |
ATTTGCAGTAAACACTCTTC+TGG | - | chr2_4:900049-900068 | Msa0307760:intron | 35.0% | |
AATCATGTCTTGCACTATGT+AGG | + | chr2_4:900090-900109 | None:intergenic | 35.0% | |
GAAAGGTGGAATTTAAAGAG+CGG | - | chr2_4:900211-900230 | Msa0307760:CDS | 35.0% | |
TATGGAAAGTTAAGCTTCGA+GGG | - | chr2_4:900236-900255 | Msa0307760:intron | 35.0% | |
! | GTTGATTTCACTTGTGACTA+TGG | + | chr2_4:900314-900333 | None:intergenic | 35.0% |
ATCATCTTGCATACCCATAA+GGG | + | chr2_4:900546-900565 | None:intergenic | 35.0% | |
! | CGGTTTTCCTTTTCTTTCTT+TGG | - | chr2_4:900595-900614 | Msa0307760:intron | 35.0% |
!! | CGTGTAGCTTTATCAAAAGT+TGG | - | chr2_4:900661-900680 | Msa0307760:intron | 35.0% |
AAATGCAAGAGTGAAAACCA+AGG | - | chr2_4:900698-900717 | Msa0307760:intron | 35.0% | |
TAAACCTACTTAGTTACCCT+TGG | - | chr2_4:900966-900985 | Msa0307760:CDS | 35.0% | |
TTACCCTTGGATCAAAGAAA+AGG | - | chr2_4:900979-900998 | Msa0307760:CDS | 35.0% | |
AACGAAGAACTCTCTATTCA+TGG | - | chr2_4:901007-901026 | Msa0307760:intron | 35.0% | |
AGAAATGGACATTGGACTAT+AGG | - | chr2_4:901062-901081 | Msa0307760:intron | 35.0% | |
GAAATGGACATTGGACTATA+GGG | - | chr2_4:901063-901082 | Msa0307760:intron | 35.0% | |
AAATGGACATTGGACTATAG+GGG | - | chr2_4:901064-901083 | Msa0307760:intron | 35.0% | |
AAATCTACACACACGTGAAA+TGG | + | chr2_4:901292-901311 | None:intergenic | 35.0% | |
AAGGGATCAGAGATTGAAGA+AGG | + | chr2_4:898139-898158 | None:intergenic | 40.0% | |
GGTGGAAACTTTGTAGCAAA+GGG | + | chr2_4:898157-898176 | None:intergenic | 40.0% | |
AGGTGGAAACTTTGTAGCAA+AGG | + | chr2_4:898158-898177 | None:intergenic | 40.0% | |
TAACTGGAAGAGGATAAAGG+TGG | + | chr2_4:898175-898194 | None:intergenic | 40.0% | |
!! | TGATGGGTTATAACTGGAAG+AGG | + | chr2_4:898185-898204 | None:intergenic | 40.0% |
CTTCCAGTTATAACCCATCA+AGG | - | chr2_4:898185-898204 | Msa0307760:CDS | 40.0% | |
!! | TACCCTTGATGGGTTATAAC+TGG | + | chr2_4:898191-898210 | None:intergenic | 40.0% |
GAATGAATGCATACCCTTGA+TGG | + | chr2_4:898202-898221 | None:intergenic | 40.0% | |
!! | ATTTTAGCCGTAATTTGCGC+AGG | + | chr2_4:898310-898329 | None:intergenic | 40.0% |
AGACCCATTTGACAGCATTA+AGG | - | chr2_4:898335-898354 | Msa0307760:CDS | 40.0% | |
CACACCTTAATGCTGTCAAA+TGG | + | chr2_4:898342-898361 | None:intergenic | 40.0% | |
GACCAATCATGAAGATTCTC+AGG | + | chr2_4:898479-898498 | None:intergenic | 40.0% | |
! | GAATCTTCATGATTGGTCGT+CGG | - | chr2_4:898481-898500 | Msa0307760:intron | 40.0% |
! | TGTAATTCAGGCTAGTCCTA+TGG | - | chr2_4:898580-898599 | Msa0307760:CDS | 40.0% |
GCTGAGACTTATTGATCCAA+TGG | - | chr2_4:898693-898712 | Msa0307760:intron | 40.0% | |
GCAAGACTTTCAAACTGTTC+AGG | + | chr2_4:899331-899350 | None:intergenic | 40.0% | |
ACAGTTTGAAAGTCTTGCCA+AGG | - | chr2_4:899333-899352 | Msa0307760:intron | 40.0% | |
!! | TACCTTTGGAGTTTGAACCT+TGG | + | chr2_4:899353-899372 | None:intergenic | 40.0% |
TCTCTCTATTATCCACCTTC+TGG | - | chr2_4:899386-899405 | Msa0307760:intron | 40.0% | |
! | GTATGCCCCTCCAATATTTT+GGG | - | chr2_4:899558-899577 | Msa0307760:intron | 40.0% |
AAACAAGGCCTATACCTCAA+AGG | + | chr2_4:899637-899656 | None:intergenic | 40.0% | |
AAGCTATACTGGAGAGCTTA+TGG | - | chr2_4:899779-899798 | Msa0307760:intron | 40.0% | |
! | TCTCTTTTCCTGATACAGAG+TGG | - | chr2_4:899999-900018 | Msa0307760:intron | 40.0% |
GGAATTTAAAGAGCGGAGTA+TGG | - | chr2_4:900218-900237 | Msa0307760:CDS | 40.0% | |
GTATGGAAAGTTAAGCTTCG+AGG | - | chr2_4:900235-900254 | Msa0307760:intron | 40.0% | |
GTTGAGAACATCTTAGTCGT+TGG | - | chr2_4:900494-900513 | Msa0307760:intron | 40.0% | |
CATCATCTTGCATACCCATA+AGG | + | chr2_4:900547-900566 | None:intergenic | 40.0% | |
CTTATGGGTATGCAAGATGA+TGG | - | chr2_4:900545-900564 | Msa0307760:intron | 40.0% | |
TGATCCAAGGGTAACTAAGT+AGG | + | chr2_4:900973-900992 | None:intergenic | 40.0% | |
! | CCACCTTTTCTTTGATCCAA+GGG | + | chr2_4:900985-901004 | None:intergenic | 40.0% |
! | TCCACCTTTTCTTTGATCCA+AGG | + | chr2_4:900986-901005 | None:intergenic | 40.0% |
GAAGAACTCTCTATTCATGG+TGG | - | chr2_4:901010-901029 | Msa0307760:intron | 40.0% | |
! | ATCTATGCTTTTAGTCCCAG+AGG | + | chr2_4:901203-901222 | None:intergenic | 40.0% |
TACACACACGTGAAATGGTT+GGG | + | chr2_4:901287-901306 | None:intergenic | 40.0% | |
CTCTGTTCCTGCGCAAATTA+CGG | - | chr2_4:898300-898319 | Msa0307760:CDS | 45.0% | |
!! | AGATTCTCAGGATTGGTCGT+TGG | + | chr2_4:898467-898486 | None:intergenic | 45.0% |
CTGTCTTACTTGTGCACCAT+AGG | + | chr2_4:898599-898618 | None:intergenic | 45.0% | |
GCCATATCTCACTTGATCCA+AGG | - | chr2_4:898671-898690 | Msa0307760:intron | 45.0% | |
GCCTTGGATCAAGTGAGATA+TGG | + | chr2_4:898675-898694 | None:intergenic | 45.0% | |
GGATCAATAAGTCTCAGCCT+TGG | + | chr2_4:898691-898710 | None:intergenic | 45.0% | |
AATCCAATAGTCTGTGGCTG+TGG | - | chr2_4:898845-898864 | Msa0307760:intron | 45.0% | |
AAACCACAGCCACAGACTAT+TGG | + | chr2_4:898851-898870 | None:intergenic | 45.0% | |
TGCCAAGGTTCAAACTCCAA+AGG | - | chr2_4:899348-899367 | Msa0307760:intron | 45.0% | |
TTATTGCCTGTGCAGATTCC+AGG | - | chr2_4:899535-899554 | Msa0307760:intron | 45.0% | |
TATTGCCTGTGCAGATTCCA+GGG | - | chr2_4:899536-899555 | Msa0307760:intron | 45.0% | |
! | GGTATGCCCCTCCAATATTT+TGG | - | chr2_4:899557-899576 | Msa0307760:intron | 45.0% |
!! | GGTTCCTACCTTTGAGGTAT+AGG | - | chr2_4:899626-899645 | Msa0307760:intron | 45.0% |
AAGGCCTATACCTCAAAGGT+AGG | + | chr2_4:899633-899652 | None:intergenic | 45.0% | |
CTAAGATGTTCTCAACCTGC+AGG | + | chr2_4:900490-900509 | None:intergenic | 45.0% | |
! | TGCAAGATGATGGCAGTACA+AGG | - | chr2_4:900555-900574 | Msa0307760:intron | 45.0% |
CCCTTGGATCAAAGAAAAGG+TGG | - | chr2_4:900982-901001 | Msa0307760:CDS | 45.0% | |
GGAACCAAACTGGAGGAAAA+TGG | - | chr2_4:901085-901104 | Msa0307760:intron | 45.0% | |
!!! | TCTGCCATTTTCCTCCAGTT+TGG | + | chr2_4:901092-901111 | None:intergenic | 45.0% |
CACGAATTGGTAAGTCGATC+AGG | + | chr2_4:901165-901184 | None:intergenic | 45.0% | |
ACACACACGTGAAATGGTTG+GGG | + | chr2_4:901286-901305 | None:intergenic | 45.0% | |
CTACACACACGTGAAATGGT+TGG | + | chr2_4:901288-901307 | None:intergenic | 45.0% | |
! | TTCATGATTGGTCGTCGGTC+TGG | - | chr2_4:898486-898505 | Msa0307760:intron | 50.0% |
AAGGCTTCTATGGGATCTCC+AGG | - | chr2_4:899084-899103 | Msa0307760:intron | 50.0% | |
! | AATATTGGAGGGGCATACCC+TGG | + | chr2_4:899556-899575 | None:intergenic | 50.0% |
CGGATTGTGAATGCATCTCC+TGG | + | chr2_4:899591-899610 | None:intergenic | 50.0% | |
TACACTGGCGATCAAAGTCG+AGG | + | chr2_4:900737-900756 | None:intergenic | 50.0% | |
GGACTATAGGGGAACCAAAC+TGG | - | chr2_4:901075-901094 | Msa0307760:intron | 50.0% | |
CTATAGGGGAACCAAACTGG+AGG | - | chr2_4:901078-901097 | Msa0307760:intron | 50.0% | |
!! | CTCAGGATTGGTCGTTGGTC+CGG | + | chr2_4:898462-898481 | None:intergenic | 55.0% |
CTGAAGGCTTAGCCAGAAGG+TGG | + | chr2_4:899401-899420 | None:intergenic | 55.0% | |
CAGCTGAAGGCTTAGCCAGA+AGG | + | chr2_4:899404-899423 | None:intergenic | 55.0% | |
GCATACCCTGGAATCTGCAC+AGG | + | chr2_4:899544-899563 | None:intergenic | 55.0% | |
CTGAGGGTCCACTCTGTATC+AGG | + | chr2_4:900010-900029 | None:intergenic | 55.0% | |
CTGGCGATCAAAGTCGAGGT+GGG | + | chr2_4:900733-900752 | None:intergenic | 55.0% | |
ACTGGCGATCAAAGTCGAGG+TGG | + | chr2_4:900734-900753 | None:intergenic | 55.0% | |
CCTTCTCGCAATGCGTACAC+TGG | + | chr2_4:900752-900771 | None:intergenic | 55.0% | |
CCAGTGTACGCATTGCGAGA+AGG | - | chr2_4:900749-900768 | Msa0307760:intron | 55.0% | |
TCGTTGGCCACAGCTGCTGT+GGG | - | chr2_4:900510-900529 | Msa0307760:intron | 60.0% | |
GTATACCCCCACAGCAGCTG+TGG | + | chr2_4:900520-900539 | None:intergenic | 60.0% | |
! | TGGGGGTATACGCGCCCTTA+TGG | - | chr2_4:900529-900548 | Msa0307760:intron | 60.0% |
! | GGGGGTATACGCGCCCTTAT+GGG | - | chr2_4:900530-900549 | Msa0307760:intron | 60.0% |
GAGGTGGGAAGCAGAAGCCT+TGG | + | chr2_4:900718-900737 | None:intergenic | 60.0% | |
GTCGTTGGCCACAGCTGCTG+TGG | - | chr2_4:900509-900528 | Msa0307760:intron | 65.0% | |
CGTTGGCCACAGCTGCTGTG+GGG | - | chr2_4:900511-900530 | Msa0307760:intron | 65.0% | |
GTTGGCCACAGCTGCTGTGG+GGG | - | chr2_4:900512-900531 | Msa0307760:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 897937 | 901377 | 897937 | ID=Msa0307760;Name=Msa0307760 |
chr2_4 | mRNA | 897937 | 901377 | 897937 | ID=Msa0307760-mRNA-1;Parent=Msa0307760;Name=Msa0307760-mRNA-1;_AED=0.11;_eAED=0.11;_QI=190|0.85|1|1|1|1|8|233|264 |
chr2_4 | exon | 897937 | 898370 | 897937 | ID=Msa0307760-mRNA-1:exon:351;Parent=Msa0307760-mRNA-1 |
chr2_4 | exon | 898544 | 898646 | 898544 | ID=Msa0307760-mRNA-1:exon:350;Parent=Msa0307760-mRNA-1 |
chr2_4 | exon | 898738 | 898820 | 898738 | ID=Msa0307760-mRNA-1:exon:349;Parent=Msa0307760-mRNA-1 |
chr2_4 | exon | 899244 | 899297 | 899244 | ID=Msa0307760-mRNA-1:exon:348;Parent=Msa0307760-mRNA-1 |
chr2_4 | exon | 899945 | 899993 | 899945 | ID=Msa0307760-mRNA-1:exon:347;Parent=Msa0307760-mRNA-1 |
chr2_4 | exon | 900088 | 900252 | 900088 | ID=Msa0307760-mRNA-1:exon:346;Parent=Msa0307760-mRNA-1 |
chr2_4 | exon | 900958 | 901016 | 900958 | ID=Msa0307760-mRNA-1:exon:345;Parent=Msa0307760-mRNA-1 |
chr2_4 | exon | 901107 | 901377 | 901107 | ID=Msa0307760-mRNA-1:exon:344;Parent=Msa0307760-mRNA-1 |
chr2_4 | five_prime_UTR | 901188 | 901377 | 901188 | ID=Msa0307760-mRNA-1:five_prime_utr;Parent=Msa0307760-mRNA-1 |
chr2_4 | CDS | 901107 | 901187 | 901107 | ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1 |
chr2_4 | CDS | 900958 | 901016 | 900958 | ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1 |
chr2_4 | CDS | 900088 | 900252 | 900088 | ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1 |
chr2_4 | CDS | 899945 | 899993 | 899945 | ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1 |
chr2_4 | CDS | 899244 | 899297 | 899244 | ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1 |
chr2_4 | CDS | 898738 | 898820 | 898738 | ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1 |
chr2_4 | CDS | 898544 | 898646 | 898544 | ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1 |
chr2_4 | CDS | 898170 | 898370 | 898170 | ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1 |
chr2_4 | three_prime_UTR | 897937 | 898169 | 897937 | ID=Msa0307760-mRNA-1:three_prime_utr;Parent=Msa0307760-mRNA-1 |
Gene Sequence |
Protein sequence |