AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0307760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307760 MtrunA17_Chr2g0279581 84.106 302 10 1 1 264 1 302 0.0 513
Msa0307760 MtrunA17_Chr5g0427341 41.639 305 124 8 7 263 10 308 5.05e-67 210
Msa0307760 MtrunA17_Chr8g0365441 32.714 269 119 5 18 245 1 248 6.88e-41 141
Msa0307760 MtrunA17_Chr5g0413551 37.037 216 92 3 73 244 33 248 9.73e-41 141
Msa0307760 MtrunA17_Chr6g0450641 34.413 247 109 4 39 244 89 323 2.70e-38 136
Msa0307760 MtrunA17_Chr3g0117661 38.220 191 77 3 91 240 55 245 3.09e-35 127
Msa0307760 MtrunA17_Chr3g0117691 47.934 121 61 1 122 240 125 245 2.97e-33 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307760 AT4G33580.3 47.059 272 94 6 37 264 36 301 2.04e-74 229
Msa0307760 AT4G33580.1 47.059 272 94 6 37 264 36 301 2.04e-74 229
Msa0307760 AT4G33580.2 46.520 273 95 7 37 264 36 302 1.63e-72 224
Msa0307760 AT1G58180.7 41.206 199 77 2 84 242 23 221 1.33e-50 166
Msa0307760 AT1G58180.3 41.206 199 77 2 84 242 23 221 1.33e-50 166
Msa0307760 AT1G58180.6 41.206 199 77 2 84 242 23 221 1.33e-50 166
Msa0307760 AT1G58180.2 41.206 199 77 2 84 242 74 272 2.60e-50 167
Msa0307760 AT1G58180.4 41.206 199 77 2 84 242 74 272 2.60e-50 167
Msa0307760 AT1G23730.2 37.327 217 94 2 73 247 36 252 6.49e-44 149
Msa0307760 AT1G23730.1 37.327 217 94 2 73 247 36 252 6.49e-44 149
Msa0307760 AT1G70410.3 38.140 215 91 3 75 247 38 252 4.52e-42 145
Msa0307760 AT1G70410.1 38.140 215 91 3 75 247 38 252 4.52e-42 145
Msa0307760 AT1G70410.2 38.140 215 91 3 75 247 60 274 1.14e-41 144
Msa0307760 AT1G58180.1 39.326 178 68 2 84 221 74 251 4.45e-40 139
Msa0307760 AT5G14740.9 38.614 202 83 3 84 244 50 251 1.09e-36 131
Msa0307760 AT5G14740.8 38.614 202 83 3 84 244 50 251 1.09e-36 131
Msa0307760 AT5G14740.7 38.614 202 83 3 84 244 50 251 1.09e-36 131
Msa0307760 AT5G14740.2 38.614 202 83 3 84 244 50 251 1.09e-36 131
Msa0307760 AT5G14740.6 38.614 202 83 3 84 244 50 251 1.09e-36 131
Msa0307760 AT5G14740.1 38.614 202 83 3 84 244 122 323 5.17e-36 131
Msa0307760 AT3G01500.4 36.634 202 87 3 84 244 50 251 1.02e-34 125
Msa0307760 AT3G01500.1 36.634 202 87 3 84 244 50 251 1.80e-34 125
Msa0307760 AT3G01500.3 36.634 202 87 3 84 244 127 328 2.32e-34 127
Msa0307760 AT3G01500.2 36.634 202 87 3 84 244 127 328 3.92e-34 126
Msa0307760 AT5G14740.4 38.119 202 83 4 84 244 122 322 1.51e-33 124
Msa0307760 AT5G14740.3 38.119 202 83 4 84 244 122 322 5.52e-33 123
Msa0307760 AT1G58180.5 38.710 155 55 2 84 198 74 228 5.37e-30 114
Msa0307760 AT5G14740.5 33.974 156 62 3 84 198 122 277 1.53e-15 75.5

Find 78 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTCAGTGTTCTTCTTTAA+AGG 0.218106 2_4:-900227 Msa0307760:CDS
TTCTTCTTTAAAGGCTTCTA+TGG 0.218623 2_4:-900218 Msa0307760:CDS
GCAAGACTTTCAAACTGTTC+AGG 0.276705 2_4:+899964 None:intergenic
GAAATGGACATTGGACTATA+GGG 0.318375 2_4:-898229 Msa0307760:CDS
ATCAAAAGTTGGGTTATTCA+TGG 0.325701 2_4:-898620 Msa0307760:CDS
ATTTGCAGTAAACACTCTTC+TGG 0.333907 2_4:-899243 Msa0307760:intron
CGTGTAGCTTTATCAAAAGT+TGG 0.339113 2_4:-898631 Msa0307760:intron
AGAAATGGACATTGGACTAT+AGG 0.342791 2_4:-898230 Msa0307760:CDS
TTAATTGTTCATTTGAGAAA+TGG 0.357926 2_4:-898245 Msa0307760:CDS
CTCTGTTCCTGCGCAAATTA+CGG 0.359512 2_4:-900992 Msa0307760:CDS
GTTGGTAAACAACATGGAAT+AGG 0.359886 2_4:+901349 None:intergenic
AGACCCATTTGACAGCATTA+AGG 0.363149 2_4:-900957 Msa0307760:intron
TACCCTTGATGGGTTATAAC+TGG 0.371016 2_4:+901104 None:intergenic
GGACTATAGGGGAACCAAAC+TGG 0.385882 2_4:-898217 Msa0307760:CDS
GTGTCTAAAATTTATACCTC+TGG 0.386177 2_4:-898108 Msa0307760:three_prime_UTR
TACACACACGTGAAATGGTT+GGG 0.395069 2_4:+898008 None:intergenic
CAAGACTTTCAAACTGTTCA+GGG 0.397042 2_4:+899965 None:intergenic
AAATCTACACACACGTGAAA+TGG 0.407565 2_4:+898003 None:intergenic
GAATGAATGCATACCCTTGA+TGG 0.407802 2_4:+901093 None:intergenic
CACACCTTAATGCTGTCAAA+TGG 0.409752 2_4:+900953 None:intergenic
TTTGAGTTTGAGTTCTTCAA+TGG 0.413777 2_4:-901184 Msa0307760:exon
GGAACCAAACTGGAGGAAAA+TGG 0.421310 2_4:-898207 Msa0307760:CDS
ATCATCTTGCATACCCATAA+GGG 0.424264 2_4:+898749 None:intergenic
CATCATCTTGCATACCCATA+AGG 0.436099 2_4:+898748 None:intergenic
TGATCCAAGGGTAACTAAGT+AGG 0.442764 2_4:+898322 None:intergenic
TAAACCTACTTAGTTACCCT+TGG 0.445262 2_4:-898326 Msa0307760:CDS
TTATAACTGGAAGAGGATAA+AGG 0.445717 2_4:+901117 None:intergenic
AACGAAGAACTCTCTATTCA+TGG 0.451547 2_4:-898285 Msa0307760:CDS
TCGTTGGCCACAGCTGCTGT+GGG 0.452907 2_4:-898782 Msa0307760:CDS
GTCGTTGGCCACAGCTGCTG+TGG 0.460065 2_4:-898783 Msa0307760:CDS
GTGTAGCTTTATCAAAAGTT+GGG 0.461410 2_4:-898630 Msa0307760:intron
GTGGATAAAGTTTGTAATGT+TGG 0.462582 2_4:+901331 None:intergenic
GGTGGAAACTTTGTAGCAAA+GGG 0.463259 2_4:+901138 None:intergenic
CACGAATTGGTAAGTCGATC+AGG 0.466661 2_4:+898130 None:intergenic
ACACCTTAATGCTGTCAAAT+GGG 0.471844 2_4:+900954 None:intergenic
AAGGCTTCTATGGGATCTCC+AGG 0.478157 2_4:-900208 Msa0307760:CDS
TCTTCTTTAAAGGCTTCTAT+GGG 0.484512 2_4:-900217 Msa0307760:CDS
TTCATTTGAGAAATGGACAT+TGG 0.487217 2_4:-898238 Msa0307760:CDS
GAAAGAGTTATAAACATAGT+TGG 0.488329 2_4:+901226 None:intergenic
CTTCCAGTTATAACCCATCA+AGG 0.490907 2_4:-901107 Msa0307760:CDS
TTACCCTTGGATCAAAGAAA+AGG 0.495682 2_4:-898313 Msa0307760:CDS
TAATGCAGCATTTGTTTCTG+AGG 0.502192 2_4:+899268 None:intergenic
AATGCAGCATTTGTTTCTGA+GGG 0.509806 2_4:+899269 None:intergenic
GTAACTAAGTAGGTTTACTA+AGG 0.516928 2_4:+898332 None:intergenic
AGGTGGAAACTTTGTAGCAA+AGG 0.522465 2_4:+901137 None:intergenic
TGATGGGTTATAACTGGAAG+AGG 0.525265 2_4:+901110 None:intergenic
TAAGTAGGTTTACTAAGGAA+TGG 0.532715 2_4:+898337 None:intergenic
TGTCTAAAATTTATACCTCT+GGG 0.538011 2_4:-898107 Msa0307760:three_prime_UTR
AAGGGATCAGAGATTGAAGA+AGG 0.543725 2_4:+901156 None:intergenic
TTAAGTTGCTGAGTAAAACC+TGG 0.546444 2_4:+900190 None:intergenic
ACACACACGTGAAATGGTTG+GGG 0.562708 2_4:+898009 None:intergenic
CTACACACACGTGAAATGGT+TGG 0.563505 2_4:+898007 None:intergenic
CTTATGGGTATGCAAGATGA+TGG 0.564663 2_4:-898747 Msa0307760:CDS
TACCTTTGGAGTTTGAACCT+TGG 0.567951 2_4:+899942 None:intergenic
AATGAATGCATACCCTTGAT+GGG 0.569966 2_4:+901094 None:intergenic
GAGGTGGGAAGCAGAAGCCT+TGG 0.571080 2_4:+898577 None:intergenic
GTTGAGAACATCTTAGTCGT+TGG 0.572846 2_4:-898798 Msa0307760:CDS
GTTGGCCACAGCTGCTGTGG+GGG 0.577076 2_4:-898780 Msa0307760:CDS
CCCTTGGATCAAAGAAAAGG+TGG 0.580841 2_4:-898310 Msa0307760:CDS
ACAGTTTGAAAGTCTTGCCA+AGG 0.582237 2_4:-899959 Msa0307760:CDS
TGATATATTTAACGATCTGA+AGG 0.584958 2_4:-900122 Msa0307760:CDS
CCTTCTCGCAATGCGTACAC+TGG 0.586303 2_4:+898543 None:intergenic
TGCAAGATGATGGCAGTACA+AGG 0.586853 2_4:-898737 Msa0307760:intron
CGTTGGCCACAGCTGCTGTG+GGG 0.598268 2_4:-898781 Msa0307760:CDS
CCAGTGTACGCATTGCGAGA+AGG 0.600622 2_4:-898543 Msa0307760:intron
TGTAATGTTGGTAAACAACA+TGG 0.613132 2_4:+901343 None:intergenic
ACTTTAGCTGAAGTTAAAGA+CGG 0.618046 2_4:-900151 Msa0307760:CDS
AAGTATAAAGAGTGTGTGTG+TGG 0.621516 2_4:+901312 None:intergenic
TGCCAAGGTTCAAACTCCAA+AGG 0.633339 2_4:-899944 Msa0307760:intron
CTGGCGATCAAAGTCGAGGT+GGG 0.637149 2_4:+898562 None:intergenic
TTCCAGTTATAACCCATCAA+GGG 0.637369 2_4:-901106 Msa0307760:intron
AAATGGACATTGGACTATAG+GGG 0.637668 2_4:-898228 Msa0307760:CDS
ACTGGCGATCAAAGTCGAGG+TGG 0.654998 2_4:+898561 None:intergenic
TAACTGGAAGAGGATAAAGG+TGG 0.660641 2_4:+901120 None:intergenic
TACACTGGCGATCAAAGTCG+AGG 0.668978 2_4:+898558 None:intergenic
AAATGCAAGAGTGAAAACCA+AGG 0.707710 2_4:-898594 Msa0307760:CDS
CTATAGGGGAACCAAACTGG+AGG 0.709599 2_4:-898214 Msa0307760:CDS
GAAGAACTCTCTATTCATGG+TGG 0.732574 2_4:-898282 Msa0307760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAATCAAAAATTGA+GGG + chr2_4:898018-898037 None:intergenic 10.0%
!!! TTAAATTGTTTTTATATTAC+AGG - chr2_4:900922-900941 Msa0307760:intron 10.0%
!! GATTAATTAATCAAAAATTG+AGG + chr2_4:898019-898038 None:intergenic 15.0%
!! ACAAAAAAGAACAAAAATTT+GGG + chr2_4:898367-898386 None:intergenic 15.0%
!! AACAAAAAAGAACAAAAATT+TGG + chr2_4:898368-898387 None:intergenic 15.0%
!! TATCAAACAATTAAATTACA+AGG + chr2_4:898767-898786 None:intergenic 15.0%
!! TTACAATTATAAAAGAATGT+TGG - chr2_4:900144-900163 Msa0307760:CDS 15.0%
!!! CTACAAAAAATAAAGTATTT+TGG - chr2_4:901116-901135 Msa0307760:CDS 15.0%
!!! TCGAACTTTTTTTTAAAACT+CGG + chr2_4:898515-898534 None:intergenic 20.0%
!!! AAAAATTTGTTTTTCACCAT+TGG + chr2_4:898712-898731 None:intergenic 20.0%
!! AAATTGAAGAATGAACTTAA+AGG + chr2_4:899455-899474 None:intergenic 20.0%
!! ACAGAAATAACTTATATAAG+CGG + chr2_4:899709-899728 None:intergenic 20.0%
!!! CATTCTTTTATAATTGTAAC+AGG + chr2_4:900143-900162 None:intergenic 20.0%
!! ATTTATACCAAAGAAAGAAA+AGG + chr2_4:900605-900624 None:intergenic 20.0%
!! ATTGAATGATATGAACTATT+AGG - chr2_4:900828-900847 Msa0307760:intron 20.0%
!! TTACATAATCAAGTTCTTAT+GGG + chr2_4:900880-900899 None:intergenic 20.0%
!! TTTACATAATCAAGTTCTTA+TGG + chr2_4:900881-900900 None:intergenic 20.0%
!! TTAATTGTTCATTTGAGAAA+TGG - chr2_4:901047-901066 Msa0307760:intron 20.0%
! GAAAGAGTTATAAACATAGT+TGG + chr2_4:898069-898088 None:intergenic 25.0%
! TGCTTTCTTTATGTTAATTG+AGG - chr2_4:898404-898423 Msa0307760:intron 25.0%
! TATTAAGTTTGTATCTTCAC+CGG - chr2_4:898440-898459 Msa0307760:intron 25.0%
! AAAAAAAAGTTCGAATCTTC+AGG - chr2_4:898521-898540 Msa0307760:intron 25.0%
!! ACGAAAAACAAATTTTTGCA+TGG + chr2_4:898632-898651 None:intergenic 25.0%
!!! AAAAATTTGTTTTTCGTCAC+TGG - chr2_4:898635-898654 Msa0307760:intron 25.0%
!! GTGAAAAACAAATTTTTGCA+TGG - chr2_4:898715-898734 Msa0307760:intron 25.0%
! TCTTTGTGATCTAAATATGT+TGG - chr2_4:898875-898894 Msa0307760:intron 25.0%
! AAAAGAATAGCTGCAAAAAA+TGG + chr2_4:898927-898946 None:intergenic 25.0%
! TAGAAACATTTAGTTGAATC+AGG - chr2_4:898958-898977 Msa0307760:intron 25.0%
!! ACATTAGAACTTTGTTTAGA+AGG + chr2_4:899036-899055 None:intergenic 25.0%
! TGATATATTTAACGATCTGA+AGG - chr2_4:899170-899189 Msa0307760:intron 25.0%
!! GAAAATAATGTTTCTAACCA+TGG + chr2_4:899246-899265 None:intergenic 25.0%
!! AATACTTTGAAAACAGCTTA+TGG - chr2_4:899803-899822 Msa0307760:intron 25.0%
! TCAAATAAGTTATTCGTAAC+AGG - chr2_4:899887-899906 Msa0307760:intron 25.0%
!! AGTTGTTATTATCATTGCTA+TGG - chr2_4:899939-899958 Msa0307760:intron 25.0%
! TGAAATCAACCAATAAGATA+AGG - chr2_4:900324-900343 Msa0307760:intron 25.0%
!!! TCTATTAGCTTTCTTAATAG+TGG - chr2_4:900414-900433 Msa0307760:intron 25.0%
!! AAGATTTTCACTTCTTGTTA+AGG - chr2_4:900449-900468 Msa0307760:intron 25.0%
!! AGGTACTTAATTCTAGTTAT+CGG - chr2_4:900575-900594 Msa0307760:intron 25.0%
! GAAAATAGAAGTAAAAACTC+AGG + chr2_4:901143-901162 None:intergenic 25.0%
!! TAAATTTTAGACACACGAAT+TGG + chr2_4:901178-901197 None:intergenic 25.0%
!! TGTCTAAAATTTATACCTCT+GGG - chr2_4:901185-901204 Msa0307760:exon 25.0%
! GAAAGAGAAAAATTTCATCA+TGG + chr2_4:901350-901369 None:intergenic 25.0%
! TGTAATGTTGGTAAACAACA+TGG + chr2_4:897952-897971 None:intergenic 30.0%
GTGGATAAAGTTTGTAATGT+TGG + chr2_4:897964-897983 None:intergenic 30.0%
! TTTGAGTTTGAGTTCTTCAA+TGG - chr2_4:898108-898127 Msa0307760:three_prime_UTR 30.0%
TTATAACTGGAAGAGGATAA+AGG + chr2_4:898178-898197 None:intergenic 30.0%
AGAAAACAGAGTAAAAACAG+AGG + chr2_4:898224-898243 None:intergenic 30.0%
!!! GTTAATTGAGGTGTTTTTAG+TGG - chr2_4:898416-898435 Msa0307760:intron 30.0%
GCATACTGATATTGTAATTC+AGG - chr2_4:898568-898587 Msa0307760:CDS 30.0%
TGATAAAATCCAATAGTCTG+TGG - chr2_4:898839-898858 Msa0307760:intron 30.0%
!!! TGAAATCTCTCTTTTTTCTG+TGG - chr2_4:899004-899023 Msa0307760:intron 30.0%
! AACAAAGTTCTAATGTTTGC+AGG - chr2_4:899040-899059 Msa0307760:intron 30.0%
AAGTCAGTGTTCTTCTTTAA+AGG - chr2_4:899065-899084 Msa0307760:intron 30.0%
! TTCTTCTTTAAAGGCTTCTA+TGG - chr2_4:899074-899093 Msa0307760:intron 30.0%
! TCTTCTTTAAAGGCTTCTAT+GGG - chr2_4:899075-899094 Msa0307760:intron 30.0%
ACTTTAGCTGAAGTTAAAGA+CGG - chr2_4:899141-899160 Msa0307760:intron 30.0%
TGTAAGCTTCATAAAATCCA+TGG - chr2_4:899226-899245 Msa0307760:intron 30.0%
!!! GTTAGTTCTGTTTTATTGTC+AGG - chr2_4:899299-899318 Msa0307760:intron 30.0%
AAAGACAGAACAATTACCTT+TGG + chr2_4:899367-899386 None:intergenic 30.0%
ATAAATCAACAAACAGCTGA+AGG + chr2_4:899417-899436 None:intergenic 30.0%
TGAAATCCCAAAATATTGGA+GGG + chr2_4:899567-899586 None:intergenic 30.0%
TTGAAATCCCAAAATATTGG+AGG + chr2_4:899568-899587 None:intergenic 30.0%
TGGTTGAAATCCCAAAATAT+TGG + chr2_4:899571-899590 None:intergenic 30.0%
!!! AATATTTTGGGATTTCAACC+AGG - chr2_4:899570-899589 Msa0307760:intron 30.0%
CGAAGTTGTTTATTCAAACA+AGG + chr2_4:899652-899671 None:intergenic 30.0%
! ACTGTTTTCATAAGCTATAC+TGG - chr2_4:899768-899787 Msa0307760:intron 30.0%
AGAATTAGAAGAAGCAAGTA+GGG + chr2_4:899982-900001 None:intergenic 30.0%
CTGCAACAATTTCTATAGAA+AGG - chr2_4:900194-900213 Msa0307760:CDS 30.0%
CAACAATTTCTATAGAAAGG+TGG - chr2_4:900197-900216 Msa0307760:CDS 30.0%
ATGTCATGACCTTATCTTAT+TGG + chr2_4:900336-900355 None:intergenic 30.0%
! ATAGACATTTTTATTCCTGC+AGG - chr2_4:900472-900491 Msa0307760:intron 30.0%
! CAACTTTTGATAAAGCTACA+CGG + chr2_4:900663-900682 None:intergenic 30.0%
!! GTGTAGCTTTATCAAAAGTT+GGG - chr2_4:900662-900681 Msa0307760:intron 30.0%
ATCAAAAGTTGGGTTATTCA+TGG - chr2_4:900672-900691 Msa0307760:intron 30.0%
AATGTGTAAATTCACTGTTG+AGG - chr2_4:900796-900815 Msa0307760:intron 30.0%
TAAGTAGGTTTACTAAGGAA+TGG + chr2_4:900958-900977 None:intergenic 30.0%
GTAACTAAGTAGGTTTACTA+AGG + chr2_4:900963-900982 None:intergenic 30.0%
TTCATTTGAGAAATGGACAT+TGG - chr2_4:901054-901073 Msa0307760:intron 30.0%
! GTGTCTAAAATTTATACCTC+TGG - chr2_4:901184-901203 Msa0307760:exon 30.0%
! GTTGGTAAACAACATGGAAT+AGG + chr2_4:897946-897965 None:intergenic 35.0%
! AAGTATAAAGAGTGTGTGTG+TGG + chr2_4:897983-898002 None:intergenic 35.0%
TTCCAGTTATAACCCATCAA+GGG - chr2_4:898186-898205 Msa0307760:CDS 35.0%
AATGAATGCATACCCTTGAT+GGG + chr2_4:898201-898220 None:intergenic 35.0%
ACACCTTAATGCTGTCAAAT+GGG + chr2_4:898341-898360 None:intergenic 35.0%
ATCATGAAGATTCTCAGGAT+TGG + chr2_4:898474-898493 None:intergenic 35.0%
ATCCTGAGAATCTTCATGAT+TGG - chr2_4:898474-898493 Msa0307760:intron 35.0%
TGATCTAAATATGTTGGCAC+TGG - chr2_4:898881-898900 Msa0307760:intron 35.0%
GTTGAATCAGGCTTATTGAA+AGG - chr2_4:898970-898989 Msa0307760:intron 35.0%
! TTAAGTTGCTGAGTAAAACC+TGG + chr2_4:899105-899124 None:intergenic 35.0%
CAAGACTTTCAAACTGTTCA+GGG + chr2_4:899330-899349 None:intergenic 35.0%
! ACTTTTCCAAGAACAGTTCA+TGG - chr2_4:899512-899531 Msa0307760:intron 35.0%
CAATAACCATGAACTGTTCT+TGG + chr2_4:899521-899540 None:intergenic 35.0%
GAAATCCCAAAATATTGGAG+GGG + chr2_4:899566-899585 None:intergenic 35.0%
AATCCGCAATGTTGCTAATT+TGG - chr2_4:899605-899624 Msa0307760:intron 35.0%
GAACCAAATTAGCAACATTG+CGG + chr2_4:899611-899630 None:intergenic 35.0%
! TAATTTGGTTCCTACCTTTG+AGG - chr2_4:899620-899639 Msa0307760:intron 35.0%
! AAACAGAGTGTTTATGTCAG+TGG - chr2_4:899858-899877 Msa0307760:intron 35.0%
GTCAATAGAAGTGAAACTTC+AGG + chr2_4:899913-899932 None:intergenic 35.0%
GAGAATTAGAAGAAGCAAGT+AGG + chr2_4:899983-900002 None:intergenic 35.0%
!! AATGCAGCATTTGTTTCTGA+GGG + chr2_4:900026-900045 None:intergenic 35.0%
!! TAATGCAGCATTTGTTTCTG+AGG + chr2_4:900027-900046 None:intergenic 35.0%
ATTTGCAGTAAACACTCTTC+TGG - chr2_4:900049-900068 Msa0307760:intron 35.0%
AATCATGTCTTGCACTATGT+AGG + chr2_4:900090-900109 None:intergenic 35.0%
GAAAGGTGGAATTTAAAGAG+CGG - chr2_4:900211-900230 Msa0307760:CDS 35.0%
TATGGAAAGTTAAGCTTCGA+GGG - chr2_4:900236-900255 Msa0307760:intron 35.0%
! GTTGATTTCACTTGTGACTA+TGG + chr2_4:900314-900333 None:intergenic 35.0%
ATCATCTTGCATACCCATAA+GGG + chr2_4:900546-900565 None:intergenic 35.0%
! CGGTTTTCCTTTTCTTTCTT+TGG - chr2_4:900595-900614 Msa0307760:intron 35.0%
!! CGTGTAGCTTTATCAAAAGT+TGG - chr2_4:900661-900680 Msa0307760:intron 35.0%
AAATGCAAGAGTGAAAACCA+AGG - chr2_4:900698-900717 Msa0307760:intron 35.0%
TAAACCTACTTAGTTACCCT+TGG - chr2_4:900966-900985 Msa0307760:CDS 35.0%
TTACCCTTGGATCAAAGAAA+AGG - chr2_4:900979-900998 Msa0307760:CDS 35.0%
AACGAAGAACTCTCTATTCA+TGG - chr2_4:901007-901026 Msa0307760:intron 35.0%
AGAAATGGACATTGGACTAT+AGG - chr2_4:901062-901081 Msa0307760:intron 35.0%
GAAATGGACATTGGACTATA+GGG - chr2_4:901063-901082 Msa0307760:intron 35.0%
AAATGGACATTGGACTATAG+GGG - chr2_4:901064-901083 Msa0307760:intron 35.0%
AAATCTACACACACGTGAAA+TGG + chr2_4:901292-901311 None:intergenic 35.0%
AAGGGATCAGAGATTGAAGA+AGG + chr2_4:898139-898158 None:intergenic 40.0%
GGTGGAAACTTTGTAGCAAA+GGG + chr2_4:898157-898176 None:intergenic 40.0%
AGGTGGAAACTTTGTAGCAA+AGG + chr2_4:898158-898177 None:intergenic 40.0%
TAACTGGAAGAGGATAAAGG+TGG + chr2_4:898175-898194 None:intergenic 40.0%
!! TGATGGGTTATAACTGGAAG+AGG + chr2_4:898185-898204 None:intergenic 40.0%
CTTCCAGTTATAACCCATCA+AGG - chr2_4:898185-898204 Msa0307760:CDS 40.0%
!! TACCCTTGATGGGTTATAAC+TGG + chr2_4:898191-898210 None:intergenic 40.0%
GAATGAATGCATACCCTTGA+TGG + chr2_4:898202-898221 None:intergenic 40.0%
!! ATTTTAGCCGTAATTTGCGC+AGG + chr2_4:898310-898329 None:intergenic 40.0%
AGACCCATTTGACAGCATTA+AGG - chr2_4:898335-898354 Msa0307760:CDS 40.0%
CACACCTTAATGCTGTCAAA+TGG + chr2_4:898342-898361 None:intergenic 40.0%
GACCAATCATGAAGATTCTC+AGG + chr2_4:898479-898498 None:intergenic 40.0%
! GAATCTTCATGATTGGTCGT+CGG - chr2_4:898481-898500 Msa0307760:intron 40.0%
! TGTAATTCAGGCTAGTCCTA+TGG - chr2_4:898580-898599 Msa0307760:CDS 40.0%
GCTGAGACTTATTGATCCAA+TGG - chr2_4:898693-898712 Msa0307760:intron 40.0%
GCAAGACTTTCAAACTGTTC+AGG + chr2_4:899331-899350 None:intergenic 40.0%
ACAGTTTGAAAGTCTTGCCA+AGG - chr2_4:899333-899352 Msa0307760:intron 40.0%
!! TACCTTTGGAGTTTGAACCT+TGG + chr2_4:899353-899372 None:intergenic 40.0%
TCTCTCTATTATCCACCTTC+TGG - chr2_4:899386-899405 Msa0307760:intron 40.0%
! GTATGCCCCTCCAATATTTT+GGG - chr2_4:899558-899577 Msa0307760:intron 40.0%
AAACAAGGCCTATACCTCAA+AGG + chr2_4:899637-899656 None:intergenic 40.0%
AAGCTATACTGGAGAGCTTA+TGG - chr2_4:899779-899798 Msa0307760:intron 40.0%
! TCTCTTTTCCTGATACAGAG+TGG - chr2_4:899999-900018 Msa0307760:intron 40.0%
GGAATTTAAAGAGCGGAGTA+TGG - chr2_4:900218-900237 Msa0307760:CDS 40.0%
GTATGGAAAGTTAAGCTTCG+AGG - chr2_4:900235-900254 Msa0307760:intron 40.0%
GTTGAGAACATCTTAGTCGT+TGG - chr2_4:900494-900513 Msa0307760:intron 40.0%
CATCATCTTGCATACCCATA+AGG + chr2_4:900547-900566 None:intergenic 40.0%
CTTATGGGTATGCAAGATGA+TGG - chr2_4:900545-900564 Msa0307760:intron 40.0%
TGATCCAAGGGTAACTAAGT+AGG + chr2_4:900973-900992 None:intergenic 40.0%
! CCACCTTTTCTTTGATCCAA+GGG + chr2_4:900985-901004 None:intergenic 40.0%
! TCCACCTTTTCTTTGATCCA+AGG + chr2_4:900986-901005 None:intergenic 40.0%
GAAGAACTCTCTATTCATGG+TGG - chr2_4:901010-901029 Msa0307760:intron 40.0%
! ATCTATGCTTTTAGTCCCAG+AGG + chr2_4:901203-901222 None:intergenic 40.0%
TACACACACGTGAAATGGTT+GGG + chr2_4:901287-901306 None:intergenic 40.0%
CTCTGTTCCTGCGCAAATTA+CGG - chr2_4:898300-898319 Msa0307760:CDS 45.0%
!! AGATTCTCAGGATTGGTCGT+TGG + chr2_4:898467-898486 None:intergenic 45.0%
CTGTCTTACTTGTGCACCAT+AGG + chr2_4:898599-898618 None:intergenic 45.0%
GCCATATCTCACTTGATCCA+AGG - chr2_4:898671-898690 Msa0307760:intron 45.0%
GCCTTGGATCAAGTGAGATA+TGG + chr2_4:898675-898694 None:intergenic 45.0%
GGATCAATAAGTCTCAGCCT+TGG + chr2_4:898691-898710 None:intergenic 45.0%
AATCCAATAGTCTGTGGCTG+TGG - chr2_4:898845-898864 Msa0307760:intron 45.0%
AAACCACAGCCACAGACTAT+TGG + chr2_4:898851-898870 None:intergenic 45.0%
TGCCAAGGTTCAAACTCCAA+AGG - chr2_4:899348-899367 Msa0307760:intron 45.0%
TTATTGCCTGTGCAGATTCC+AGG - chr2_4:899535-899554 Msa0307760:intron 45.0%
TATTGCCTGTGCAGATTCCA+GGG - chr2_4:899536-899555 Msa0307760:intron 45.0%
! GGTATGCCCCTCCAATATTT+TGG - chr2_4:899557-899576 Msa0307760:intron 45.0%
!! GGTTCCTACCTTTGAGGTAT+AGG - chr2_4:899626-899645 Msa0307760:intron 45.0%
AAGGCCTATACCTCAAAGGT+AGG + chr2_4:899633-899652 None:intergenic 45.0%
CTAAGATGTTCTCAACCTGC+AGG + chr2_4:900490-900509 None:intergenic 45.0%
! TGCAAGATGATGGCAGTACA+AGG - chr2_4:900555-900574 Msa0307760:intron 45.0%
CCCTTGGATCAAAGAAAAGG+TGG - chr2_4:900982-901001 Msa0307760:CDS 45.0%
GGAACCAAACTGGAGGAAAA+TGG - chr2_4:901085-901104 Msa0307760:intron 45.0%
!!! TCTGCCATTTTCCTCCAGTT+TGG + chr2_4:901092-901111 None:intergenic 45.0%
CACGAATTGGTAAGTCGATC+AGG + chr2_4:901165-901184 None:intergenic 45.0%
ACACACACGTGAAATGGTTG+GGG + chr2_4:901286-901305 None:intergenic 45.0%
CTACACACACGTGAAATGGT+TGG + chr2_4:901288-901307 None:intergenic 45.0%
! TTCATGATTGGTCGTCGGTC+TGG - chr2_4:898486-898505 Msa0307760:intron 50.0%
AAGGCTTCTATGGGATCTCC+AGG - chr2_4:899084-899103 Msa0307760:intron 50.0%
! AATATTGGAGGGGCATACCC+TGG + chr2_4:899556-899575 None:intergenic 50.0%
CGGATTGTGAATGCATCTCC+TGG + chr2_4:899591-899610 None:intergenic 50.0%
TACACTGGCGATCAAAGTCG+AGG + chr2_4:900737-900756 None:intergenic 50.0%
GGACTATAGGGGAACCAAAC+TGG - chr2_4:901075-901094 Msa0307760:intron 50.0%
CTATAGGGGAACCAAACTGG+AGG - chr2_4:901078-901097 Msa0307760:intron 50.0%
!! CTCAGGATTGGTCGTTGGTC+CGG + chr2_4:898462-898481 None:intergenic 55.0%
CTGAAGGCTTAGCCAGAAGG+TGG + chr2_4:899401-899420 None:intergenic 55.0%
CAGCTGAAGGCTTAGCCAGA+AGG + chr2_4:899404-899423 None:intergenic 55.0%
GCATACCCTGGAATCTGCAC+AGG + chr2_4:899544-899563 None:intergenic 55.0%
CTGAGGGTCCACTCTGTATC+AGG + chr2_4:900010-900029 None:intergenic 55.0%
CTGGCGATCAAAGTCGAGGT+GGG + chr2_4:900733-900752 None:intergenic 55.0%
ACTGGCGATCAAAGTCGAGG+TGG + chr2_4:900734-900753 None:intergenic 55.0%
CCTTCTCGCAATGCGTACAC+TGG + chr2_4:900752-900771 None:intergenic 55.0%
CCAGTGTACGCATTGCGAGA+AGG - chr2_4:900749-900768 Msa0307760:intron 55.0%
TCGTTGGCCACAGCTGCTGT+GGG - chr2_4:900510-900529 Msa0307760:intron 60.0%
GTATACCCCCACAGCAGCTG+TGG + chr2_4:900520-900539 None:intergenic 60.0%
! TGGGGGTATACGCGCCCTTA+TGG - chr2_4:900529-900548 Msa0307760:intron 60.0%
! GGGGGTATACGCGCCCTTAT+GGG - chr2_4:900530-900549 Msa0307760:intron 60.0%
GAGGTGGGAAGCAGAAGCCT+TGG + chr2_4:900718-900737 None:intergenic 60.0%
GTCGTTGGCCACAGCTGCTG+TGG - chr2_4:900509-900528 Msa0307760:intron 65.0%
CGTTGGCCACAGCTGCTGTG+GGG - chr2_4:900511-900530 Msa0307760:intron 65.0%
GTTGGCCACAGCTGCTGTGG+GGG - chr2_4:900512-900531 Msa0307760:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 897937 901377 897937 ID=Msa0307760;Name=Msa0307760
chr2_4 mRNA 897937 901377 897937 ID=Msa0307760-mRNA-1;Parent=Msa0307760;Name=Msa0307760-mRNA-1;_AED=0.11;_eAED=0.11;_QI=190|0.85|1|1|1|1|8|233|264
chr2_4 exon 897937 898370 897937 ID=Msa0307760-mRNA-1:exon:351;Parent=Msa0307760-mRNA-1
chr2_4 exon 898544 898646 898544 ID=Msa0307760-mRNA-1:exon:350;Parent=Msa0307760-mRNA-1
chr2_4 exon 898738 898820 898738 ID=Msa0307760-mRNA-1:exon:349;Parent=Msa0307760-mRNA-1
chr2_4 exon 899244 899297 899244 ID=Msa0307760-mRNA-1:exon:348;Parent=Msa0307760-mRNA-1
chr2_4 exon 899945 899993 899945 ID=Msa0307760-mRNA-1:exon:347;Parent=Msa0307760-mRNA-1
chr2_4 exon 900088 900252 900088 ID=Msa0307760-mRNA-1:exon:346;Parent=Msa0307760-mRNA-1
chr2_4 exon 900958 901016 900958 ID=Msa0307760-mRNA-1:exon:345;Parent=Msa0307760-mRNA-1
chr2_4 exon 901107 901377 901107 ID=Msa0307760-mRNA-1:exon:344;Parent=Msa0307760-mRNA-1
chr2_4 five_prime_UTR 901188 901377 901188 ID=Msa0307760-mRNA-1:five_prime_utr;Parent=Msa0307760-mRNA-1
chr2_4 CDS 901107 901187 901107 ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1
chr2_4 CDS 900958 901016 900958 ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1
chr2_4 CDS 900088 900252 900088 ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1
chr2_4 CDS 899945 899993 899945 ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1
chr2_4 CDS 899244 899297 899244 ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1
chr2_4 CDS 898738 898820 898738 ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1
chr2_4 CDS 898544 898646 898544 ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1
chr2_4 CDS 898170 898370 898170 ID=Msa0307760-mRNA-1:cds;Parent=Msa0307760-mRNA-1
chr2_4 three_prime_UTR 897937 898169 897937 ID=Msa0307760-mRNA-1:three_prime_utr;Parent=Msa0307760-mRNA-1
Gene Sequence

>Msa0307760

ATGGCAATTCCTTCTTCAATCTCTGATCCCTTTGCTACAAAGTTTCCACCTTTATCCTCTTCCAGTTATAACCCATCAAGGATCTCTGTTCCTGCGCAAATTACGGCTAAAATTGAGCAGACCCATTTGACAGCATTAAGGAGAAGTCAGTGTTCTTCTTTAAAGGCTTCTATGGGATCTCCAGGTTTTACTCAGCAACTTAATAACAGCAAGTTAGAGACTTTAGCTGAAGTTAAAGACGGACGTGATGATATATTTAACGATCTGAAGGATAGATTTTTAAATTTTAAGAAGAATGTATACATGCAAAACCCTGAACAGTTTGAAAGTCTTGCCAAGGTTCAAACTCCAAAGAGTGGACCCTCAGAAACAAATGCTGCATTAGAATTTGCAGTAAACACTCTTCTGGTTGAGAACATCTTAGTCGTTGGCCACAGCTGCTGTGGGGGTATACGCGCCCTTATGGGTATGCAAGATGATGGCAGTACAAGCTTTATCAAAAGTTGGGTTATTCATGGAAAAAATGCAAGAGTGAAAACCAAGGCTTCTGCTTCCCACCTCGACTTTGATCGCCAGTGTACGCATTGCGAGAAGGAATCAATTAACCATTCCTTAGTAAACCTACTTAGTTACCCTTGGATCAAAGAAAAGGTGGAGAACGAAGAACTCTCTATTCATGGTGGTTACTATGACTTTGTTAATTGTTCATTTGAGAAATGGACATTGGACTATAGGGGAACCAAACTGGAGGAAAATGGCAGAATTGCTACAAAAAATAAAGTATTTTGGTCCTGA

Protein sequence

>Msa0307760

MAIPSSISDPFATKFPPLSSSSYNPSRISVPAQITAKIEQTHLTALRRSQCSSLKASMGSPGFTQQLNNSKLETLAEVKDGRDDIFNDLKDRFLNFKKNVYMQNPEQFESLAKVQTPKSGPSETNAALEFAVNTLLVENILVVGHSCCGGIRALMGMQDDGSTSFIKSWVIHGKNARVKTKASASHLDFDRQCTHCEKESINHSLVNLLSYPWIKEKVENEELSIHGGYYDFVNCSFEKWTLDYRGTKLEENGRIATKNKVFWS*