AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0190330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190330 MtrunA17_Chr2g0279901 96.084 664 24 2 86 749 15 676 0.0 1253
Msa0190330 MtrunA17_Chr4g0049501 89.417 652 68 1 99 749 24 675 0.0 1182
Msa0190330 MtrunA17_Chr2g0277021 54.290 641 284 4 103 736 46 684 0.0 689
Msa0190330 MtrunA17_Chr7g0262821 49.842 634 288 11 129 740 10 635 0.0 585
Msa0190330 MtrunA17_Chr4g0031301 51.833 600 260 10 129 706 10 602 0.0 582
Msa0190330 MtrunA17_Chr4g0031321 51.500 600 262 10 129 706 10 602 0.0 580
Msa0190330 MtrunA17_Chr7g0223181 51.667 600 261 10 129 706 10 602 0.0 580
Msa0190330 MtrunA17_Chr8g0388671 52.901 586 250 11 128 695 38 615 0.0 577
Msa0190330 MtrunA17_Chr8g0388761 52.730 586 251 11 128 695 38 615 0.0 576
Msa0190330 MtrunA17_Chr7g0223291 50.560 625 275 13 129 728 10 625 0.0 575
Msa0190330 MtrunA17_Chr4g0073741 51.261 595 260 10 129 702 9 594 0.0 568
Msa0190330 MtrunA17_Chr2g0284681 47.069 580 273 12 129 687 9 575 1.16e-166 493
Msa0190330 MtrunA17_Chr7g0223721 46.880 593 291 12 121 695 2 588 2.41e-163 485
Msa0190330 MtrunA17_Chr7g0233311 47.849 558 266 10 129 668 10 560 3.48e-163 485
Msa0190330 MtrunA17_Chr7g0223781 45.017 602 299 11 129 704 10 605 2.87e-161 480
Msa0190330 MtrunA17_Chr7g0223711 46.085 562 273 10 129 670 10 561 3.92e-161 479
Msa0190330 MtrunA17_Chr7g0221661 45.777 592 297 12 129 702 10 595 4.14e-161 479
Msa0190330 MtrunA17_Chr7g0223751 46.595 558 275 11 129 670 10 560 8.13e-161 479
Msa0190330 MtrunA17_Chr2g0298851 45.315 587 293 13 129 695 10 588 4.71e-159 474
Msa0190330 MtrunA17_Chr7g0223621 45.042 595 294 14 129 701 10 593 4.07e-158 472
Msa0190330 MtrunA17_Chr4g0040931 46.350 589 284 15 129 695 10 588 8.59e-157 468
Msa0190330 MtrunA17_Chr8g0350731 45.748 588 293 13 102 670 8 588 1.18e-156 469
Msa0190330 MtrunA17_Chr6g0462601 44.007 584 304 11 129 695 10 587 1.75e-156 468
Msa0190330 MtrunA17_Chr5g0427901 43.339 623 313 14 129 720 10 623 1.13e-154 463
Msa0190330 MtrunA17_Chr7g0223851 43.974 614 312 15 129 720 19 622 1.27e-154 463
Msa0190330 MtrunA17_Chr7g0223741 45.536 560 279 11 129 670 10 561 1.50e-154 462
Msa0190330 MtrunA17_Chr2g0298861 45.151 598 292 14 121 688 2 593 6.00e-154 461
Msa0190330 MtrunA17_Chr2g0293581 44.804 587 297 11 129 695 11 590 1.26e-153 460
Msa0190330 MtrunA17_Chr7g0223731 44.982 558 284 11 129 670 10 560 1.89e-152 457
Msa0190330 MtrunA17_Chr7g0223801 43.655 591 309 12 129 702 10 593 1.41e-151 455
Msa0190330 MtrunA17_Chr7g0225671 45.408 588 291 15 127 695 15 591 2.92e-151 454
Msa0190330 MtrunA17_Chr7g0223031 44.803 558 285 11 129 670 10 560 5.53e-150 451
Msa0190330 MtrunA17_Chr2g0287631 44.426 610 289 11 129 695 10 612 1.65e-149 450
Msa0190330 MtrunA17_Chr6g0462681 44.345 557 289 9 129 670 10 560 2.13e-149 451
Msa0190330 MtrunA17_Chr7g0248131 45.633 561 279 14 129 670 10 563 2.23e-149 450
Msa0190330 MtrunA17_Chr7g0223701 44.621 567 282 13 129 670 10 569 4.32e-149 449
Msa0190330 MtrunA17_Chr7g0223631 43.964 555 280 12 129 670 10 546 2.17e-147 444
Msa0190330 MtrunA17_Chr2g0296391 44.991 529 266 9 129 639 10 531 7.13e-147 440
Msa0190330 MtrunA17_Chr7g0233301 44.723 559 251 12 129 668 10 529 2.06e-143 433
Msa0190330 MtrunA17_Chr6g0462641 41.993 562 300 9 129 670 10 565 2.50e-142 433
Msa0190330 MtrunA17_Chr6g0462711 41.709 597 317 12 129 701 11 600 5.49e-142 432
Msa0190330 MtrunA17_Chr7g0248151 44.723 559 285 13 129 670 10 561 1.10e-141 430
Msa0190330 MtrunA17_Chr6g0462771 41.993 562 300 9 129 670 10 565 3.15e-141 429
Msa0190330 MtrunA17_Chr7g0217971 42.445 589 296 13 129 702 10 570 4.81e-141 427
Msa0190330 MtrunA17_Chr7g0223821 48.190 525 237 15 115 619 1 510 2.51e-140 429
Msa0190330 MtrunA17_Chr4g0012541 40.554 614 324 15 129 720 10 604 1.07e-136 417
Msa0190330 MtrunA17_Chr7g0223541 44.534 494 255 9 191 670 30 518 5.59e-132 403
Msa0190330 MtrunA17_Chr7g0223831 43.292 559 261 16 129 668 10 531 1.43e-130 400
Msa0190330 MtrunA17_Chr2g0293601 43.811 509 232 8 129 622 10 479 7.04e-130 394
Msa0190330 MtrunA17_Chr6g0462611 43.340 503 267 8 181 670 11 508 2.04e-129 398
Msa0190330 MtrunA17_Chr7g0228281 39.573 609 301 13 129 720 71 629 9.11e-129 397
Msa0190330 MtrunA17_Chr7g0215261 43.190 558 257 15 129 668 10 525 3.69e-128 394
Msa0190330 MtrunA17_Chr8g0390821 38.288 666 319 20 125 720 7 650 8.36e-125 387
Msa0190330 MtrunA17_Chr7g0223681 45.223 471 238 8 212 668 5 469 2.21e-124 382
Msa0190330 MtrunA17_Chr2g0331381 40.147 543 239 13 128 653 6 479 1.22e-118 365
Msa0190330 MtrunA17_Chr6g0462861 37.407 540 303 12 126 652 7 524 1.44e-105 337
Msa0190330 MtrunA17_Chr2g0293561 45.312 384 189 7 129 498 10 386 1.25e-104 326
Msa0190330 MtrunA17_Chr2g0299921 48.092 393 187 6 118 500 1019 1404 1.64e-103 349
Msa0190330 MtrunA17_Chr2g0299921 47.222 396 189 8 129 511 1414 1802 1.07e-93 320
Msa0190330 MtrunA17_Chr2g0299791 47.656 384 184 7 129 502 1043 1419 2.10e-103 346
Msa0190330 MtrunA17_Chr2g0299851 47.368 380 187 5 129 500 1039 1413 2.24e-101 340
Msa0190330 MtrunA17_Chr2g0299821 45.932 381 185 7 129 495 10 383 2.58e-99 315
Msa0190330 MtrunA17_Chr2g0299821 50.562 89 36 1 568 648 396 484 5.23e-19 90.9
Msa0190330 MtrunA17_Chr2g0299881 42.955 440 219 10 75 502 1000 1419 4.19e-97 329
Msa0190330 MtrunA17_Chr1g0151991 52.364 275 119 6 129 392 10 283 2.92e-85 271
Msa0190330 MtrunA17_Chr1g0166551 34.296 554 238 15 127 668 4 443 1.70e-80 266
Msa0190330 MtrunA17_Chr7g0245521 50.379 264 119 4 129 381 10 272 2.24e-78 253
Msa0190330 MtrunA17_Chr2g0293271 37.296 429 185 9 149 566 54 409 8.33e-73 243
Msa0190330 MtrunA17_Chr5g0394391 30.784 523 300 11 121 604 22 521 3.23e-68 235
Msa0190330 MtrunA17_Chr3g0098761 34.483 406 249 6 128 521 3 403 6.15e-68 239
Msa0190330 MtrunA17_Chr7g0245531 46.484 256 131 4 418 668 2 256 4.51e-67 224
Msa0190330 MtrunA17_Chr4g0004331 34.069 408 252 5 128 523 3 405 9.40e-67 236
Msa0190330 MtrunA17_Chr2g0331901 32.673 404 255 5 128 519 3 401 1.99e-63 227
Msa0190330 MtrunA17_Chr5g0444001 30.114 528 309 11 128 616 3 509 9.69e-63 219
Msa0190330 MtrunA17_Chr7g0223671 52.356 191 82 3 190 371 6 196 1.46e-58 197
Msa0190330 MtrunA17_Chr1g0188601 51.832 191 83 3 210 391 1 191 6.88e-55 187
Msa0190330 MtrunA17_Chr1g0152001 39.286 280 156 8 426 698 3 275 3.84e-52 184
Msa0190330 MtrunA17_Chr4g0060241 30.280 535 299 16 113 606 5 506 1.81e-51 188
Msa0190330 MtrunA17_Chr6g0462631 38.614 303 132 6 232 525 40 297 3.38e-51 180
Msa0190330 MtrunA17_Chr6g0462791 53.333 165 73 1 232 392 11 175 6.27e-51 175
Msa0190330 MtrunA17_Chr7g0223761 35.780 327 153 6 350 668 3 280 8.92e-50 178
Msa0190330 MtrunA17_Chr6g0462751 34.561 353 160 11 182 521 9 303 2.35e-49 176
Msa0190330 MtrunA17_Chr2g0287131 89.130 92 7 1 1 89 1 92 8.84e-49 169
Msa0190330 MtrunA17_Chr4g0064621 30.524 534 314 13 123 615 135 652 3.42e-47 178
Msa0190330 MtrunA17_Chr4g0046881 57.037 135 53 1 249 378 14 148 1.18e-44 157
Msa0190330 MtrunA17_Chr1g0188611 43.952 248 122 7 440 675 6 248 1.31e-44 162
Msa0190330 MtrunA17_Chr3g0113161 82.418 91 13 1 2 89 3 93 7.21e-44 157
Msa0190330 MtrunA17_Chr7g0223771 55.333 150 58 3 214 354 4 153 8.13e-44 155
Msa0190330 MtrunA17_Chr3g0120101 28.571 413 264 10 119 505 17 424 4.12e-41 162
Msa0190330 MtrunA17_Chr5g0442171 31.157 337 193 9 284 598 1 320 5.34e-40 150
Msa0190330 MtrunA17_Chr7g0223861 50.382 131 56 3 196 317 4 134 1.74e-33 125
Msa0190330 MtrunA17_Chr7g0245541 47.518 141 72 2 529 668 4 143 1.14e-32 125
Msa0190330 MtrunA17_Chr6g0462691 46.377 138 69 2 439 571 5 142 1.52e-32 123
Msa0190330 MtrunA17_Chr5g0394221 30.962 239 160 5 414 648 71 308 3.94e-32 128
Msa0190330 MtrunA17_Chr6g0462701 42.484 153 59 3 232 379 40 168 3.16e-29 114
Msa0190330 MtrunA17_Chr4g0046871 50.515 97 44 2 452 544 9 105 1.36e-23 96.3
Msa0190330 MtrunA17_Chr5g0394231 29.279 222 99 6 189 401 2 174 1.10e-20 90.5
Msa0190330 MtrunA17_Chr4g0064651 44.565 92 51 0 507 598 30 121 4.56e-19 83.6
Msa0190330 MtrunA17_Chr2g0284661 53.571 84 35 2 479 558 60 143 8.16e-19 83.6
Msa0190330 MtrunA17_Chr6g0481381 52.703 74 30 1 290 358 1 74 7.69e-17 79.3
Msa0190330 MtrunA17_Chr6g0481391 32.520 123 75 2 155 273 13 131 2.95e-16 75.9
Msa0190330 MtrunA17_Chr7g0223691 57.576 66 25 2 129 192 10 74 1.40e-13 66.6
Msa0190330 MtrunA17_Chr2g0299941 52.113 71 31 1 495 562 7 77 1.63e-12 63.9
Msa0190330 MtrunA17_Chr6g0462621 48.438 64 32 1 129 192 10 72 1.86e-12 63.2
Msa0190330 MtrunA17_Chr1g0188591 50.000 66 30 2 129 192 10 74 2.12e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190330 AT5G09590.1 85.449 646 92 1 106 749 37 682 0.0 1133
Msa0190330 AT4G37910.1 83.648 636 100 1 115 746 41 676 0.0 1065
Msa0190330 AT4G37910.2 83.648 636 100 1 115 746 41 676 0.0 1065
Msa0190330 AT4G24280.1 57.475 602 251 3 122 720 74 673 0.0 685
Msa0190330 AT5G49910.1 55.416 637 261 5 122 737 74 708 0.0 685
Msa0190330 AT5G02500.1 52.007 598 262 11 129 706 10 602 0.0 585
Msa0190330 AT5G42020.1 50.479 626 281 12 128 732 37 654 0.0 581
Msa0190330 AT5G42020.3 50.479 626 281 12 128 732 42 659 0.0 581
Msa0190330 AT5G02490.1 51.338 598 266 10 129 706 10 602 0.0 580
Msa0190330 AT3G12580.1 49.921 631 285 11 129 737 10 631 0.0 579
Msa0190330 AT1G56410.1 50.732 615 276 11 129 723 10 617 0.0 577
Msa0190330 AT5G28540.1 51.400 607 268 12 128 716 37 634 0.0 576
Msa0190330 AT3G09440.1 52.249 578 250 9 129 687 10 580 0.0 573
Msa0190330 AT3G09440.4 52.249 578 250 9 129 687 10 580 0.0 573
Msa0190330 AT3G09440.2 52.249 578 250 9 129 687 10 580 0.0 573
Msa0190330 AT3G09440.3 52.249 578 250 9 129 687 10 580 0.0 573
Msa0190330 AT1G16030.1 47.833 646 298 12 129 743 9 646 0.0 557
Msa0190330 AT1G09080.2 52.817 568 247 9 128 682 42 601 0.0 544
Msa0190330 AT1G09080.1 52.817 568 247 9 128 682 52 611 0.0 543
Msa0190330 AT5G42020.2 55.967 486 191 10 128 598 37 514 2.02e-174 514
Msa0190330 AT5G02500.2 51.407 391 175 7 129 509 10 395 1.22e-125 385
Msa0190330 AT1G79920.1 33.252 409 256 5 128 524 3 406 6.02e-67 236
Msa0190330 AT1G79920.3 33.252 409 256 5 128 524 3 406 6.08e-67 236
Msa0190330 AT1G79920.2 33.252 409 256 5 128 524 3 406 6.08e-67 236
Msa0190330 AT1G79920.4 33.252 409 256 5 128 524 3 406 6.08e-67 236
Msa0190330 AT1G79930.2 32.763 409 258 5 128 524 3 406 2.14e-65 232
Msa0190330 AT1G79930.1 32.763 409 258 5 128 524 3 406 3.72e-65 232
Msa0190330 AT2G32120.1 31.660 518 298 14 120 606 21 513 7.22e-65 226
Msa0190330 AT2G32120.2 31.660 518 298 14 120 606 21 513 7.22e-65 226
Msa0190330 AT1G11660.4 26.987 667 403 15 128 723 3 656 7.11e-63 224
Msa0190330 AT1G11660.3 26.987 667 403 15 128 723 3 656 7.11e-63 224
Msa0190330 AT1G11660.1 26.987 667 403 15 128 723 3 656 7.11e-63 224
Msa0190330 AT1G11660.2 26.741 632 379 15 163 723 1 619 2.29e-55 203
Msa0190330 AT4G16660.1 27.133 457 293 11 123 544 21 472 7.34e-41 161
Msa0190330 AT4G16660.2 27.133 457 293 11 123 544 45 496 9.02e-41 161
Msa0190330 AT4G32208.1 68.468 111 33 1 641 749 43 153 1.20e-36 135

Find 206 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATCAGACTCTTTCTTTCT+TGG 0.190361 2_1:-5845080 None:intergenic
ACCATTAGAAATTTCTAAAA+TGG 0.193947 2_1:-5843220 None:intergenic
TTCTGCAGTTTCCTTCATTT+TGG 0.221735 2_1:-5842980 None:intergenic
ATTAACTAGAGCCTCAAATT+TGG 0.226202 2_1:-5843603 None:intergenic
TCAGAATTCTCGATGACTTT+TGG 0.243473 2_1:-5842688 None:intergenic
GGATGTTACACCACTCTCTT+TGG 0.249560 2_1:+5843871 Msa0190330:CDS
GAAACCACCTCCTGGACTTT+TGG 0.260284 2_1:-5843734 None:intergenic
GATGTTATTGGTATTGATTT+AGG 0.271435 2_1:+5842530 Msa0190330:CDS
CATTTGTGGGTTTGTATCTC+TGG 0.286315 2_1:-5840857 None:intergenic
TCTGCATTGTTTAAGAGTTT+TGG 0.300118 2_1:-5840914 None:intergenic
TAATTCATGTGTTTCTGTTA+TGG 0.305065 2_1:+5842559 Msa0190330:CDS
CTCTTTGGGTATTGAGACTT+TGG 0.311216 2_1:+5843886 Msa0190330:CDS
GAGCATGCAACTCGGCTTCT+TGG 0.317503 2_1:-5845050 None:intergenic
TTTAGTTTAGTAGAAATATA+AGG 0.319125 2_1:+5845475 Msa0190330:three_prime_UTR
CAAGTTTGTCTCGACCATTC+AGG 0.327999 2_1:+5842410 Msa0190330:CDS
AAAGATGCTGGTAGAATTGC+AGG 0.328628 2_1:+5843081 Msa0190330:CDS
CTCTGACTGTATCTTATGTT+GGG 0.330959 2_1:+5845785 Msa0190330:three_prime_UTR
ACTGCTGCTGCACTTTCATA+TGG 0.336051 2_1:+5843135 Msa0190330:CDS
AACAAACGGTGACACTTTCT+TGG 0.336793 2_1:+5843355 Msa0190330:CDS
CTTGATTGGAAGAACAATCT+TGG 0.337411 2_1:-5840825 None:intergenic
TCTCTGACTGTATCTTATGT+TGG 0.342751 2_1:+5845784 Msa0190330:three_prime_UTR
CTTGGAGAATTTGAGCTTGT+TGG 0.355478 2_1:+5844862 Msa0190330:CDS
TTAACAGTTCTTTAAATAAG+AGG 0.356286 2_1:+5845434 Msa0190330:three_prime_UTR
AATGTGCAAAATAAAATAAA+TGG 0.358161 2_1:-5845617 None:intergenic
GATGAAGATTCCGGTTCCTT+TGG 0.359933 2_1:+5841070 Msa0190330:CDS
ACCTCTTCATATTCTGCCTC+TGG 0.365485 2_1:-5845366 None:intergenic
CCTGCTGGAAATGATGTTAT+TGG 0.368167 2_1:+5842518 Msa0190330:CDS
GCACCAGAGATAGTGTTTAC+TGG 0.372090 2_1:-5842802 None:intergenic
CCCATTGCAACTGCCTCATC+AGG 0.375583 2_1:-5843794 None:intergenic
TATCCTCCAATTGTGATGAT+TGG 0.377696 2_1:+5845591 Msa0190330:three_prime_UTR
GGAGCCTTAACTATCTTGTA+TGG 0.386249 2_1:-5842886 None:intergenic
TTCATCACTGCTGATGCATC+TGG 0.388351 2_1:+5843548 Msa0190330:CDS
GATGTTACACCACTCTCTTT+GGG 0.394078 2_1:+5843872 Msa0190330:CDS
TTTGCCAGTGGACTTGTCCT+TGG 0.394178 2_1:-5844965 None:intergenic
CCCTCATCTGGTGGTTCTCA+AGG 0.394266 2_1:+5845330 Msa0190330:CDS
TTAAAGCCTGATGAAGATTC+CGG 0.395703 2_1:+5841061 Msa0190330:CDS
TGCAATGGGAGCAGCACTCC+AGG 0.396933 2_1:+5843808 Msa0190330:CDS
GACTGTATCTTATGTTGGGT+TGG 0.397478 2_1:+5845789 Msa0190330:three_prime_UTR
CATATTCTGCCTCTGGAGCC+TGG 0.397768 2_1:-5845359 None:intergenic
ATTGACGAAGTTCTTCTTGT+TGG 0.398755 2_1:+5843695 Msa0190330:CDS
TGACATGTGCTCTCCAATCT+TGG 0.405711 2_1:-5845289 None:intergenic
ACTGTATCTTATGTTGGGTT+GGG 0.405958 2_1:+5845790 Msa0190330:three_prime_UTR
TCAACCCATGCATCTCCATT+TGG 0.408724 2_1:-5842907 None:intergenic
TCTAGTAGTGGTCCCTCATC+TGG 0.410197 2_1:+5845318 Msa0190330:CDS
GATGCATGGGTTGAAGCTAA+TGG 0.412898 2_1:+5842916 Msa0190330:CDS
CAAATTACTATTAAGTCATC+TGG 0.413673 2_1:+5844994 Msa0190330:CDS
CAGAAAGGGGAGCTGCTTGT+AGG 0.414196 2_1:+5842748 Msa0190330:CDS
AACAAGGCCGTCTCCAAGAT+TGG 0.416194 2_1:+5845276 Msa0190330:CDS
TTTGCACATTAACAAATGAA+TGG 0.416767 2_1:+5845630 Msa0190330:three_prime_UTR
TGGTTCTCAAGGTGGGGACC+AGG 0.421379 2_1:+5845341 Msa0190330:CDS
GGACTTCGACAATGCCTTGT+TGG 0.429600 2_1:+5843385 Msa0190330:CDS
CATCTGGTGGTTCTCAAGGT+GGG 0.431284 2_1:+5845334 Msa0190330:CDS
TCTTTGGGTATTGAGACTTT+GGG 0.432640 2_1:+5843887 Msa0190330:CDS
TTGCTACTAGAGGGTAATAC+TGG 0.435103 2_1:+5845674 Msa0190330:three_prime_UTR
GAAACTGCAGAAGCTTATCT+TGG 0.436148 2_1:+5842991 Msa0190330:CDS
AGAAAAGCCTAAGTGAATAC+AGG 0.439138 2_1:+5845142 Msa0190330:CDS
TTAACACTTGGATAATTTGT+GGG 0.442214 2_1:-5841019 None:intergenic
TGGTTGCCTTCTCTCAGAAA+GGG 0.442402 2_1:+5842734 Msa0190330:CDS
TTAACAACAGAGCTTACAAT+TGG 0.443786 2_1:+5841038 Msa0190330:CDS
CACCAGAGATAGTGTTTACT+GGG 0.445183 2_1:-5842801 None:intergenic
CTTGATTGGTAGGCGATTTG+AGG 0.446705 2_1:+5842831 Msa0190330:CDS
CTTTGGGTGGTATCTTTACA+AGG 0.447010 2_1:+5843903 Msa0190330:CDS
TCTGGTGCCAAGCGCTTGAT+TGG 0.452993 2_1:+5842817 Msa0190330:CDS
ATGCATGGGTTGAAGCTAAT+GGG 0.454653 2_1:+5842917 Msa0190330:CDS
TGGTAACCAATCATCACAAT+TGG 0.457036 2_1:-5845597 None:intergenic
TGATGATGAGATTCAAAAGA+TGG 0.461331 2_1:+5845026 Msa0190330:CDS
GTTACAAGGTGAGCGGGAAA+TGG 0.461798 2_1:+5844822 Msa0190330:CDS
TAACTTGATCGAACGAACTA+AGG 0.462881 2_1:+5843625 Msa0190330:CDS
CACGTGTGATGCTGCATTTG+TGG 0.464941 2_1:-5840871 None:intergenic
TTTGGCAAGTCTCCTTGTAA+AGG 0.465703 2_1:+5843764 Msa0190330:CDS
TCAGAGAGAACTACAATAGT+AGG 0.466021 2_1:-5845768 None:intergenic
CTGGTAAGAGTAATGAAGAA+AGG 0.466055 2_1:+5845693 Msa0190330:three_prime_UTR
TGTCAAAGAGCTCCTACTCT+TGG 0.466602 2_1:+5843850 Msa0190330:CDS
CTCAATCTGAGGCATACCTC+TGG 0.468854 2_1:-5844899 None:intergenic
TGAGCATCATTGAAATAAGC+TGG 0.470119 2_1:-5843045 None:intergenic
CTTTGTTCTCACCAAAATGA+AGG 0.473741 2_1:+5842969 Msa0190330:CDS
TGATAAAACTCCAAAGGAAC+CGG 0.474031 2_1:-5841080 None:intergenic
AAATTGACGAAACCACCTCC+TGG 0.475624 2_1:-5843742 None:intergenic
AACCCAGTAAACACTATCTC+TGG 0.477225 2_1:+5842799 Msa0190330:CDS
CTGCACATGTAGGTCACAAT+TGG 0.478779 2_1:+5842386 Msa0190330:CDS
TGTTACAAATGTTACCTGAA+TGG 0.478863 2_1:-5842424 None:intergenic
ATCTGGTGGTTCTCAAGGTG+GGG 0.483027 2_1:+5845335 Msa0190330:CDS
GACTCGTGTGCCAAAAGTCC+AGG 0.485324 2_1:+5843724 Msa0190330:CDS
ATTTCCTTAGCCACTTCGGC+AGG 0.485366 2_1:-5845174 None:intergenic
GACGAAGTTCTTCTTGTTGG+AGG 0.486215 2_1:+5843698 Msa0190330:CDS
TCCTGATGAGGCAGTTGCAA+TGG 0.487005 2_1:+5843793 Msa0190330:CDS
AGGCACACCAGCCAAGCGTC+AGG 0.487979 2_1:+5842768 Msa0190330:CDS
ACGTGTGATGCTGCATTTGT+GGG 0.488656 2_1:-5840870 None:intergenic
GTTACAGCCTGACGCTTGGC+TGG 0.490075 2_1:-5842775 None:intergenic
CTCGATTTCCTTAGCCACTT+CGG 0.491099 2_1:-5845178 None:intergenic
TGGTAAGAGTAATGAAGAAA+GGG 0.492979 2_1:+5845694 Msa0190330:three_prime_UTR
AAGATAGTTAAGGCTCCAAA+TGG 0.493974 2_1:+5842892 Msa0190330:CDS
ATTAACTAGATCCAAATTTG+AGG 0.495332 2_1:+5843592 Msa0190330:CDS
GACTCCTAGTGGTTTCTAGC+TGG 0.495520 2_1:+5845399 Msa0190330:three_prime_UTR
GTTAACACTTGGATAATTTG+TGG 0.500583 2_1:-5841020 None:intergenic
AAGAACTTCGTCAATGTCCT+TGG 0.502218 2_1:-5843687 None:intergenic
TAAGCTCTGTTGTTAACACT+TGG 0.503135 2_1:-5841031 None:intergenic
CTGCTGCTGCACTTTCATAT+GGG 0.503676 2_1:+5843136 Msa0190330:CDS
TCATCTGGTGGTTCTCAAGG+TGG 0.506147 2_1:+5845333 Msa0190330:CDS
GTGGTTGCCTTCTCTCAGAA+AGG 0.507218 2_1:+5842733 Msa0190330:CDS
TCTTCTCCCTGTATTCACTT+AGG 0.507892 2_1:-5845149 None:intergenic
ACAAACGGTGACACTTTCTT+GGG 0.511382 2_1:+5843356 Msa0190330:CDS
CCTGATGAGGCAGTTGCAAT+GGG 0.511605 2_1:+5843794 Msa0190330:CDS
CAGAGGTATGCCTCAGATTG+AGG 0.511942 2_1:+5844900 Msa0190330:CDS
AAGATTGGAGAGCACATGTC+AGG 0.512685 2_1:+5845291 Msa0190330:CDS
AAGGAACCGGAATCTTCATC+AGG 0.513279 2_1:-5841067 None:intergenic
TTGGGTATTGAGACTTTGGG+TGG 0.516399 2_1:+5843890 Msa0190330:CDS
GGTTCCATACAAGATAGTTA+AGG 0.518279 2_1:+5842882 Msa0190330:CDS
TCATGTGTTTCTGTTATGGA+AGG 0.518374 2_1:+5842563 Msa0190330:CDS
TCCATGTCAGAGCTGTTTGA+AGG 0.522642 2_1:+5843649 Msa0190330:CDS
TACCTCTGGGAGCAGGAGGA+AGG 0.523025 2_1:-5844885 None:intergenic
GTGCCAAGCGCTTGATTGGT+AGG 0.526086 2_1:+5842821 Msa0190330:CDS
GATACCTGCCGAAGTGGCTA+AGG 0.526914 2_1:+5845170 Msa0190330:CDS
GCTTCCGACAACAAAATGCT+TGG 0.527578 2_1:+5844844 Msa0190330:CDS
GTTAGTTACAGCCTGACGCT+TGG 0.527720 2_1:-5842779 None:intergenic
ACGAAGTTCTTCTTGTTGGA+GGG 0.529005 2_1:+5843699 Msa0190330:CDS
GGCTCCAAATGGAGATGCAT+GGG 0.531898 2_1:+5842903 Msa0190330:CDS
TGAGGCATACCTCTGGGAGC+AGG 0.532207 2_1:-5844892 None:intergenic
TCTGCCAAGGACAAGTCCAC+TGG 0.532923 2_1:+5844961 Msa0190330:CDS
CAGTATTCACCTAGTCAGAT+TGG 0.534024 2_1:+5842943 Msa0190330:CDS
CAAAGTGTTACAAGGTGAGC+GGG 0.534641 2_1:+5844816 Msa0190330:CDS
TTCTGGTGAATGAGTTCAAG+AGG 0.539567 2_1:+5843411 Msa0190330:CDS
CAGCTCCCCTTTCTGAGAGA+AGG 0.539797 2_1:-5842740 None:intergenic
TGAGAGAAGGCAACCACAGA+TGG 0.539928 2_1:-5842727 None:intergenic
TCCTTCAAACAGCTCTGACA+TGG 0.540643 2_1:-5843650 None:intergenic
TCAGGATTTACTCCTTTACA+AGG 0.541064 2_1:-5843776 None:intergenic
TTGTAGGAATAGTAGTGTTG+CGG 0.541766 2_1:-5843934 None:intergenic
TTTCAATGATGCTCAAAGGC+AGG 0.541897 2_1:+5843053 Msa0190330:CDS
GAAACTTGATGCTGCAAACA+AGG 0.543023 2_1:+5845260 Msa0190330:CDS
AGCTTCACGAAGCCTTTGCA+AGG 0.544891 2_1:-5843468 None:intergenic
AATTTGCTGCTCTTTGCCAG+TGG 0.545585 2_1:-5844977 None:intergenic
AGGATAAGCTTGCCTTGCAA+AGG 0.547010 2_1:+5843456 Msa0190330:CDS
ATTTGAGAAGTGCGATGGAT+GGG 0.547476 2_1:+5845214 Msa0190330:CDS
TCGCCTACCAATCAAGCGCT+TGG 0.551371 2_1:-5842824 None:intergenic
GTCTTTCTGAGCATGCAACT+CGG 0.554207 2_1:-5845058 None:intergenic
AGGCAAGCTTATCCTTTGAA+AGG 0.559186 2_1:-5843448 None:intergenic
TAACCAATCATCACAATTGG+AGG 0.559190 2_1:-5845594 None:intergenic
AGGTGGGGACCAGGCTCCAG+AGG 0.561460 2_1:+5845350 Msa0190330:CDS
ACCTTGAGAACCACCAGATG+AGG 0.562067 2_1:-5845331 None:intergenic
GATTTGAGAAGTGCGATGGA+TGG 0.562641 2_1:+5845213 Msa0190330:CDS
TTTCGTTGATAAAACTCCAA+AGG 0.563007 2_1:-5841086 None:intergenic
GATGCATCAGCAGTGATGAA+AGG 0.563187 2_1:-5843545 None:intergenic
ATGTCAGGTGGCTCTAGTAG+TGG 0.564590 2_1:+5845306 Msa0190330:CDS
TTCAAGGTGAAAGCAACAAA+CGG 0.565535 2_1:+5843341 Msa0190330:intron
TGTTTCTGTTATGGAAGGAA+AGG 0.568885 2_1:+5842568 Msa0190330:CDS
AGGCAGGCAACAAAAGATGC+TGG 0.572362 2_1:+5843069 Msa0190330:CDS
ACCTTTGACATTGATGCCAA+CGG 0.572611 2_1:+5844925 Msa0190330:CDS
TGAGAGTATTGACCTTTCAA+AGG 0.575285 2_1:+5843436 Msa0190330:CDS
AGGCTCCAAATGGAGATGCA+TGG 0.577676 2_1:+5842902 Msa0190330:CDS
CCAATAACATCATTTCCAGC+AGG 0.577923 2_1:-5842518 None:intergenic
ATATGAAAGTGCAGCAGCAG+TGG 0.582158 2_1:-5843133 None:intergenic
ACCGTTGGCATCAATGTCAA+AGG 0.584830 2_1:-5844926 None:intergenic
TCAAAGTGTTACAAGGTGAG+CGG 0.588467 2_1:+5844815 Msa0190330:CDS
GTGGTGTAACATCCAAGAGT+AGG 0.589218 2_1:-5843862 None:intergenic
ATTACTATTAAGTCATCTGG+TGG 0.593329 2_1:+5844997 Msa0190330:CDS
AGTAGTGGTCCCTCATCTGG+TGG 0.593581 2_1:+5845321 Msa0190330:CDS
CTTATTTCAATGATGCTCAA+AGG 0.594949 2_1:+5843049 Msa0190330:CDS
TCAATCTGAGGCATACCTCT+GGG 0.595029 2_1:-5844898 None:intergenic
ATATTGAAATTTGTGCCTAG+TGG 0.598108 2_1:+5845566 Msa0190330:three_prime_UTR
GCTGACAATCAAACACAAGT+AGG 0.598347 2_1:+5844790 Msa0190330:CDS
GGTTGCCTTCTCTCAGAAAG+GGG 0.599666 2_1:+5842735 Msa0190330:CDS
TTTGAGAAGTGCGATGGATG+GGG 0.599804 2_1:+5845215 Msa0190330:CDS
TTCTGATTTGAGAAGTGCGA+TGG 0.600338 2_1:+5845209 Msa0190330:CDS
TATGAAAGTGCAGCAGCAGT+GGG 0.600491 2_1:-5843132 None:intergenic
TTACTATTAAGTCATCTGGT+GGG 0.600855 2_1:+5844998 Msa0190330:CDS
TGACACTTTCTTGGGAGGAG+AGG 0.601649 2_1:+5843364 Msa0190330:CDS
GGACTTGTCCTTGGCAGACA+CGG 0.604046 2_1:-5844956 None:intergenic
CAATTGTGACCTACATGTGC+AGG 0.606157 2_1:-5842385 None:intergenic
AACGGTGACACTTTCTTGGG+AGG 0.609522 2_1:+5843359 Msa0190330:CDS
TATTGTTACCGTGTCTGCCA+AGG 0.609868 2_1:+5844948 Msa0190330:CDS
GAAAAGCCTAAGTGAATACA+GGG 0.610643 2_1:+5845143 Msa0190330:CDS
GGCATACCTCTGGGAGCAGG+AGG 0.611402 2_1:-5844889 None:intergenic
CCTTGAGAACCACCAGATGA+GGG 0.613822 2_1:-5845330 None:intergenic
CAATTGGAGGATAAACCACT+AGG 0.618412 2_1:-5845581 None:intergenic
GCAATGGGAGCAGCACTCCA+GGG 0.620916 2_1:+5843809 Msa0190330:CDS
GCGTCCAGCTAGAAACCACT+AGG 0.621801 2_1:-5845403 None:intergenic
TGGTAGAATTGCAGGTCTTG+AGG 0.622522 2_1:+5843089 Msa0190330:CDS
GGCCTTCCTCCTGCTCCCAG+AGG 0.622811 2_1:+5844883 Msa0190330:CDS
AAAGTCATCGAGAATTCTGA+AGG 0.626296 2_1:+5842691 Msa0190330:CDS
GTCTCAATACCCAAAGAGAG+TGG 0.627222 2_1:-5843881 None:intergenic
TAAAGGAGTAAATCCTGATG+AGG 0.628317 2_1:+5843781 Msa0190330:CDS
TGTGCCAAAAGTCCAGGAGG+TGG 0.629804 2_1:+5843730 Msa0190330:CDS
GGAGAAGATACCTGCCGAAG+TGG 0.630286 2_1:+5845164 Msa0190330:CDS
ACAAAGGCACCAATCTGACT+AGG 0.630672 2_1:-5842952 None:intergenic
TGCACGAACTACACCATCTG+TGG 0.631245 2_1:+5842714 Msa0190330:CDS
AGACACGGTAACAATACCGT+TGG 0.636553 2_1:-5844941 None:intergenic
TCCAGAGGCAGAATATGAAG+AGG 0.637119 2_1:+5845365 Msa0190330:CDS
GGATGCAAATATTTCTACCA+AGG 0.638342 2_1:+5843670 Msa0190330:CDS
GTAGGAATCAAAGTGTTACA+AGG 0.639471 2_1:+5844808 Msa0190330:CDS
TGGAAGAACAATCTTGGTCA+TGG 0.643018 2_1:-5840819 None:intergenic
ATTGGAGAGCACATGTCAGG+TGG 0.645198 2_1:+5845294 Msa0190330:CDS
TTCATATGGGATGACAAACA+AGG 0.648584 2_1:+5843149 Msa0190330:CDS
GTGCTCTCCAATCTTGGAGA+CGG 0.649417 2_1:-5845283 None:intergenic
CGAAGTGGCTAAGGAAATCG+AGG 0.649728 2_1:+5845179 Msa0190330:CDS
TATGGGATGACAAACAAGGA+AGG 0.655329 2_1:+5843153 Msa0190330:CDS
TCAAAGGTGACCTCAATCTG+AGG 0.661059 2_1:-5844910 None:intergenic
TAACACTTGGATAATTTGTG+GGG 0.666364 2_1:-5841018 None:intergenic
AACACTAAGCCTGCACATGT+AGG 0.670184 2_1:+5842376 Msa0190330:CDS
CATCAAATGTTCCACCACCA+AGG 0.676130 2_1:-5843194 None:intergenic
CTCCAGGGTGGTATCCTACG+TGG 0.686633 2_1:+5843824 Msa0190330:CDS
TCGTGTGCCAAAAGTCCAGG+AGG 0.724781 2_1:+5843727 Msa0190330:CDS
TGAAGAAGTGAGACTCCTAG+TGG 0.725677 2_1:+5845388 Msa0190330:exon
GCTCTTTGACATCTCCACGT+AGG 0.729469 2_1:-5843838 None:intergenic
CTCCACGTAGGATACCACCC+TGG 0.737006 2_1:-5843826 None:intergenic
ATGGGAGCAGCACTCCAGGG+TGG 0.741120 2_1:+5843812 Msa0190330:CDS
ATTCACCAGAAAATCCAACA+AGG 0.754480 2_1:-5843399 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTTGTTAATTGA+AGG + chr2_1:5841991-5842010 Msa0190330:intron 10.0%
!!! TTTATTTTTTGTTAATTGAA+GGG + chr2_1:5841992-5842011 Msa0190330:intron 10.0%
!! AAAAGATCTATTCTATAAAA+TGG - chr2_1:5841609-5841628 None:intergenic 15.0%
!!! AAACATTTTAGGATAATTAT+TGG - chr2_1:5841873-5841892 None:intergenic 15.0%
!!! TAATAACATTTTTCATTTCA+AGG + chr2_1:5843325-5843344 Msa0190330:intron 15.0%
!!! TTTTGATAAATATAAATGTG+TGG - chr2_1:5844072-5844091 None:intergenic 15.0%
!! ACATTTATGTTTATTAGAAA+CGG + chr2_1:5844421-5844440 Msa0190330:intron 15.0%
!! ACATTTATGTTTATTAGAAA+CGG + chr2_1:5844421-5844440 Msa0190330:intron 15.0%
!! AATTATTATTTGACAATCAT+CGG - chr2_1:5844559-5844578 None:intergenic 15.0%
!!! TTTAGTTTAGTAGAAATATA+AGG + chr2_1:5845475-5845494 Msa0190330:three_prime_UTR 15.0%
!! AATGTGCAAAATAAAATAAA+TGG - chr2_1:5845620-5845639 None:intergenic 15.0%
!!! TTATCCTAAAATGTTTTCAT+AGG + chr2_1:5841877-5841896 Msa0190330:intron 20.0%
!!! TTTTGTTTTTGTCAATCAAA+GGG + chr2_1:5842121-5842140 Msa0190330:intron 20.0%
!!! AACTTTGTTTTTCTCATTTA+CGG + chr2_1:5842213-5842232 Msa0190330:intron 20.0%
!!! AGCATAGTATTATTTTATGA+CGG + chr2_1:5842313-5842332 Msa0190330:intron 20.0%
!!! TCCATTTTAGAAATTTCTAA+TGG + chr2_1:5843219-5843238 Msa0190330:CDS 20.0%
!!! ACCATTAGAAATTTCTAAAA+TGG - chr2_1:5843223-5843242 None:intergenic 20.0%
!!! TTCAGTTTTTACAAAGTAAT+TGG + chr2_1:5844609-5844628 Msa0190330:intron 20.0%
!! TTAACAGTTCTTTAAATAAG+AGG + chr2_1:5845434-5845453 Msa0190330:three_prime_UTR 20.0%
!!! TTATTTTTGTATCTAATGCT+GGG + chr2_1:5845502-5845521 Msa0190330:three_prime_UTR 20.0%
!! TTAACACTTGGATAATTTGT+GGG - chr2_1:5841022-5841041 None:intergenic 25.0%
!!! AGTTTTATCAACGAAAAGTA+GGG + chr2_1:5841093-5841112 Msa0190330:CDS 25.0%
! ACTAACGTTTAACAATTTCA+GGG + chr2_1:5841490-5841509 Msa0190330:intron 25.0%
! TTTGATAAACCTTGCAATTT+CGG + chr2_1:5841547-5841566 Msa0190330:intron 25.0%
! AGATCTATTCTATAAAATGG+AGG - chr2_1:5841606-5841625 None:intergenic 25.0%
!!! TTATTTTTGTGCATGCTATA+AGG + chr2_1:5841796-5841815 Msa0190330:intron 25.0%
!!! GGTGTTTTTATAAGCTATAT+TGG + chr2_1:5841817-5841836 Msa0190330:intron 25.0%
!! AGAACCTATGAAAACATTTT+AGG - chr2_1:5841884-5841903 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGACTATT+CGG - chr2_1:5841908-5841927 None:intergenic 25.0%
!!! TTGCTTTTGTTTTTGTCAAT+CGG + chr2_1:5842044-5842063 Msa0190330:intron 25.0%
!!! CTTTTGTTTTTGTCAATCAA+AGG + chr2_1:5842120-5842139 Msa0190330:intron 25.0%
! GAAAAACAAAGTTGTAGATT+AGG - chr2_1:5842206-5842225 None:intergenic 25.0%
!!! GATGTTATTGGTATTGATTT+AGG + chr2_1:5842530-5842549 Msa0190330:CDS 25.0%
!! TAATTCATGTGTTTCTGTTA+TGG + chr2_1:5842559-5842578 Msa0190330:CDS 25.0%
! AATCCAATCAATGGAAATAT+TGG - chr2_1:5842637-5842656 None:intergenic 25.0%
! AACTCAAAAAGAGATGAAAA+TGG + chr2_1:5842861-5842880 Msa0190330:CDS 25.0%
!!! AATTTCTAATGGTGTTTTTG+AGG + chr2_1:5843230-5843249 Msa0190330:CDS 25.0%
! ATTAACTAGATCCAAATTTG+AGG + chr2_1:5843592-5843611 Msa0190330:CDS 25.0%
! TTCTAACAAACATAAACGTA+TGG - chr2_1:5844205-5844224 None:intergenic 25.0%
! CTGAATACAATTCCAAAAAT+GGG - chr2_1:5844327-5844346 None:intergenic 25.0%
! ACTGAATACAATTCCAAAAA+TGG - chr2_1:5844328-5844347 None:intergenic 25.0%
! TTCAGTCTTTACAAAGTAAT+TGG + chr2_1:5844342-5844361 Msa0190330:intron 25.0%
! AAGTAATTGGACATTCAAAA+TGG + chr2_1:5844355-5844374 Msa0190330:intron 25.0%
! CTATAATACACATACATTTG+AGG + chr2_1:5844667-5844686 Msa0190330:intron 25.0%
! CAAATTACTATTAAGTCATC+TGG + chr2_1:5844994-5845013 Msa0190330:CDS 25.0%
!!! CTTATTTTTGTATCTAATGC+TGG + chr2_1:5845501-5845520 Msa0190330:three_prime_UTR 25.0%
!!! TATTTTTGTATCTAATGCTG+GGG + chr2_1:5845503-5845522 Msa0190330:three_prime_UTR 25.0%
! TTTGCACATTAACAAATGAA+TGG + chr2_1:5845630-5845649 Msa0190330:three_prime_UTR 25.0%
! AGAAAAAAAAAAAGAGCAGA+TGG + chr2_1:5845723-5845742 Msa0190330:three_prime_UTR 25.0%
! GAAAAAAAAAAAGAGCAGAT+GGG + chr2_1:5845724-5845743 Msa0190330:three_prime_UTR 25.0%
! AAAAAAAAAAAGAGCAGATG+GGG + chr2_1:5845725-5845744 Msa0190330:three_prime_UTR 25.0%
!! TTGTTTAAGAGTTTTGGTGA+TGG - chr2_1:5840911-5840930 None:intergenic 30.0%
! TCTGCATTGTTTAAGAGTTT+TGG - chr2_1:5840917-5840936 None:intergenic 30.0%
! TTTGCATGTGATGATTTTCA+AGG + chr2_1:5840979-5840998 Msa0190330:CDS 30.0%
! TAACACTTGGATAATTTGTG+GGG - chr2_1:5841021-5841040 None:intergenic 30.0%
GTTAACACTTGGATAATTTG+TGG - chr2_1:5841023-5841042 None:intergenic 30.0%
TTAACAACAGAGCTTACAAT+TGG + chr2_1:5841038-5841057 Msa0190330:CDS 30.0%
! TTTCGTTGATAAAACTCCAA+AGG - chr2_1:5841089-5841108 None:intergenic 30.0%
!! GAGTTTTATCAACGAAAAGT+AGG + chr2_1:5841092-5841111 Msa0190330:CDS 30.0%
GACTAACGTTTAACAATTTC+AGG + chr2_1:5841489-5841508 Msa0190330:intron 30.0%
CTAACGTTTAACAATTTCAG+GGG + chr2_1:5841491-5841510 Msa0190330:intron 30.0%
TAACGTTTAACAATTTCAGG+GGG + chr2_1:5841492-5841511 Msa0190330:intron 30.0%
ATTGATGTTTCGTTAACTAC+AGG + chr2_1:5841518-5841537 Msa0190330:intron 30.0%
TTGATGTTTCGTTAACTACA+GGG + chr2_1:5841519-5841538 Msa0190330:intron 30.0%
TTGATAAACCTTGCAATTTC+GGG + chr2_1:5841548-5841567 Msa0190330:intron 30.0%
!! TAAGTTTTGTGAGACTATTC+GGG - chr2_1:5841907-5841926 None:intergenic 30.0%
TGTTACAAATGTTACCTGAA+TGG - chr2_1:5842427-5842446 None:intergenic 30.0%
GTTCCAATATTTCCATTGAT+TGG + chr2_1:5842631-5842650 Msa0190330:intron 30.0%
CTTATTTCAATGATGCTCAA+AGG + chr2_1:5843049-5843068 Msa0190330:CDS 30.0%
ATTAACTAGAGCCTCAAATT+TGG - chr2_1:5843606-5843625 None:intergenic 30.0%
TATTCCTACAAAAAAGAGTC+AGG + chr2_1:5843946-5843965 Msa0190330:CDS 30.0%
!!! ATTACCTGACTCTTTTTTGT+AGG - chr2_1:5843953-5843972 None:intergenic 30.0%
TGTTATATAACAATCAGCAG+TGG - chr2_1:5843984-5844003 None:intergenic 30.0%
TGATTACACTTACACATCTA+AGG + chr2_1:5844251-5844270 Msa0190330:intron 30.0%
TATTAGTTGACAATCATCAG+TGG - chr2_1:5844289-5844308 None:intergenic 30.0%
AATTCCAAAAATGGGAAACT+CGG - chr2_1:5844319-5844338 None:intergenic 30.0%
TGAATGTCAAATTACGTCAA+CGG - chr2_1:5844447-5844466 None:intergenic 30.0%
AAGTCAACAAAATACGTCAA+CGG - chr2_1:5844499-5844518 None:intergenic 30.0%
TGATTACACTTACACATCTA+AGG + chr2_1:5844251-5844270 Msa0190330:intron 30.0%
TATTATTTGACAATCATCGG+TGG - chr2_1:5844556-5844575 None:intergenic 30.0%
CTGAATACACTTCCAAAAAT+GGG - chr2_1:5844594-5844613 None:intergenic 30.0%
ACTGAATACACTTCCAAAAA+TGG - chr2_1:5844595-5844614 None:intergenic 30.0%
! AGCTTTGTGTATTTATGTCA+TGG + chr2_1:5844714-5844733 Msa0190330:intron 30.0%
CTTTGTAATATCATTGTTCC+AGG + chr2_1:5844753-5844772 Msa0190330:intron 30.0%
ATTACTATTAAGTCATCTGG+TGG + chr2_1:5844997-5845016 Msa0190330:CDS 30.0%
TTACTATTAAGTCATCTGGT+GGG + chr2_1:5844998-5845017 Msa0190330:CDS 30.0%
! TGATGATGAGATTCAAAAGA+TGG + chr2_1:5845026-5845045 Msa0190330:CDS 30.0%
! GGGGATTTTATTAGTGTTTT+TGG + chr2_1:5845522-5845541 Msa0190330:three_prime_UTR 30.0%
!!! TATTAGTGTTTTTGGAGAAC+TGG + chr2_1:5845530-5845549 Msa0190330:three_prime_UTR 30.0%
ATATTGAAATTTGTGCCTAG+TGG + chr2_1:5845566-5845585 Msa0190330:three_prime_UTR 30.0%
!!! TGTTTTGAAATTGCTACTAG+AGG + chr2_1:5845664-5845683 Msa0190330:three_prime_UTR 30.0%
!!! GTTTTGAAATTGCTACTAGA+GGG + chr2_1:5845665-5845684 Msa0190330:three_prime_UTR 30.0%
TGGTAAGAGTAATGAAGAAA+GGG + chr2_1:5845694-5845713 Msa0190330:three_prime_UTR 30.0%
AAAAAAAAAAGAGCAGATGG+GGG + chr2_1:5845726-5845745 Msa0190330:three_prime_UTR 30.0%
CTTGATTGGAAGAACAATCT+TGG - chr2_1:5840828-5840847 None:intergenic 35.0%
!!! TCTGGCTTTCTTTTCTTGAT+TGG - chr2_1:5840842-5840861 None:intergenic 35.0%
TAAGCTCTGTTGTTAACACT+TGG - chr2_1:5841034-5841053 None:intergenic 35.0%
TTAAAGCCTGATGAAGATTC+CGG + chr2_1:5841061-5841080 Msa0190330:CDS 35.0%
TGATAAAACTCCAAAGGAAC+CGG - chr2_1:5841083-5841102 None:intergenic 35.0%
CCATCAGCATAAAATTGAAG+AGG - chr2_1:5841218-5841237 None:intergenic 35.0%
! CCTCTTCAATTTTATGCTGA+TGG + chr2_1:5841215-5841234 Msa0190330:intron 35.0%
TGTTGGATGGAGGAAATTAA+CGG + chr2_1:5841454-5841473 Msa0190330:intron 35.0%
AACGTTTAACAATTTCAGGG+GGG + chr2_1:5841493-5841512 Msa0190330:intron 35.0%
TGATGTTTCGTTAACTACAG+GGG + chr2_1:5841520-5841539 Msa0190330:intron 35.0%
TGATAAACCTTGCAATTTCG+GGG + chr2_1:5841549-5841568 Msa0190330:intron 35.0%
!! GAACTGATTTTGAGCTTGTT+TGG + chr2_1:5841693-5841712 Msa0190330:intron 35.0%
!! CTTCTACAGCTTATTTTCGT+AGG - chr2_1:5841847-5841866 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr2_1:5841940-5841959 Msa0190330:intron 35.0%
!!! GATGTTGTTTTGCAGTTGAT+AGG + chr2_1:5842352-5842371 Msa0190330:intron 35.0%
! TCATGTGTTTCTGTTATGGA+AGG + chr2_1:5842563-5842582 Msa0190330:CDS 35.0%
! TGTTTCTGTTATGGAAGGAA+AGG + chr2_1:5842568-5842587 Msa0190330:CDS 35.0%
! TCAGAATTCTCGATGACTTT+TGG - chr2_1:5842691-5842710 None:intergenic 35.0%
AAAGTCATCGAGAATTCTGA+AGG + chr2_1:5842691-5842710 Msa0190330:CDS 35.0%
GGTTCCATACAAGATAGTTA+AGG + chr2_1:5842882-5842901 Msa0190330:CDS 35.0%
AAGATAGTTAAGGCTCCAAA+TGG + chr2_1:5842892-5842911 Msa0190330:CDS 35.0%
!! CTTCATTTTGGTGAGAACAA+AGG - chr2_1:5842971-5842990 None:intergenic 35.0%
CTTTGTTCTCACCAAAATGA+AGG + chr2_1:5842969-5842988 Msa0190330:CDS 35.0%
! TTCTGCAGTTTCCTTCATTT+TGG - chr2_1:5842983-5843002 None:intergenic 35.0%
TGAGCATCATTGAAATAAGC+TGG - chr2_1:5843048-5843067 None:intergenic 35.0%
TTCATATGGGATGACAAACA+AGG + chr2_1:5843149-5843168 Msa0190330:CDS 35.0%
!!! TCCTTTTTTAACCTGTCTGA+AGG + chr2_1:5843277-5843296 Msa0190330:intron 35.0%
TCCTTCAGACAGGTTAAAAA+AGG - chr2_1:5843281-5843300 None:intergenic 35.0%
TTCAAGGTGAAAGCAACAAA+CGG + chr2_1:5843341-5843360 Msa0190330:intron 35.0%
ATTCACCAGAAAATCCAACA+AGG - chr2_1:5843402-5843421 None:intergenic 35.0%
!! TGAGAGTATTGACCTTTCAA+AGG + chr2_1:5843436-5843455 Msa0190330:CDS 35.0%
TAACTTGATCGAACGAACTA+AGG + chr2_1:5843625-5843644 Msa0190330:CDS 35.0%
! GGATGCAAATATTTCTACCA+AGG + chr2_1:5843670-5843689 Msa0190330:CDS 35.0%
ATTGACGAAGTTCTTCTTGT+TGG + chr2_1:5843695-5843714 Msa0190330:CDS 35.0%
TCAGGATTTACTCCTTTACA+AGG - chr2_1:5843779-5843798 None:intergenic 35.0%
TAAAGGAGTAAATCCTGATG+AGG + chr2_1:5843781-5843800 Msa0190330:CDS 35.0%
!! TCTTTGGGTATTGAGACTTT+GGG + chr2_1:5843887-5843906 Msa0190330:CDS 35.0%
TTGTAGGAATAGTAGTGTTG+CGG - chr2_1:5843937-5843956 None:intergenic 35.0%
GTCTCTAAGTTGCTAATCTT+TGG + chr2_1:5844007-5844026 Msa0190330:intron 35.0%
TTCTGTCTTTACGAAGTAAC+TGG + chr2_1:5844037-5844056 Msa0190330:intron 35.0%
ACTCATTACGCACACATTTA+AGG + chr2_1:5844147-5844166 Msa0190330:intron 35.0%
ACTTCCAAAAATGGGAAACT+CGG - chr2_1:5844586-5844605 None:intergenic 35.0%
! CATTCAAACCATTTTGCTTG+AGG + chr2_1:5844633-5844652 Msa0190330:intron 35.0%
ACAAGATACCTCAAGCAAAA+TGG - chr2_1:5844644-5844663 None:intergenic 35.0%
! ATTGTTCCAGGTCTTTTCAA+CGG + chr2_1:5844765-5844784 Msa0190330:intron 35.0%
! GTAGGAATCAAAGTGTTACA+AGG + chr2_1:5844808-5844827 Msa0190330:CDS 35.0%
!! TTCTCCAAGCATTTTGTTGT+CGG - chr2_1:5844851-5844870 None:intergenic 35.0%
AGAAAAGCCTAAGTGAATAC+AGG + chr2_1:5845142-5845161 Msa0190330:CDS 35.0%
GAAAAGCCTAAGTGAATACA+GGG + chr2_1:5845143-5845162 Msa0190330:CDS 35.0%
TATCCTCCAATTGTGATGAT+TGG + chr2_1:5845591-5845610 Msa0190330:three_prime_UTR 35.0%
TAACCAATCATCACAATTGG+AGG - chr2_1:5845597-5845616 None:intergenic 35.0%
TGGTAACCAATCATCACAAT+TGG - chr2_1:5845600-5845619 None:intergenic 35.0%
CTGGTAAGAGTAATGAAGAA+AGG + chr2_1:5845693-5845712 Msa0190330:three_prime_UTR 35.0%
TCAGAGAGAACTACAATAGT+AGG - chr2_1:5845771-5845790 None:intergenic 35.0%
TCTCTGACTGTATCTTATGT+TGG + chr2_1:5845784-5845803 Msa0190330:three_prime_UTR 35.0%
CTCTGACTGTATCTTATGTT+GGG + chr2_1:5845785-5845804 Msa0190330:three_prime_UTR 35.0%
CATTTGTGGGTTTGTATCTC+TGG - chr2_1:5840860-5840879 None:intergenic 40.0%
!! TGATGATGCTTTTGCTCTTC+TGG - chr2_1:5840940-5840959 None:intergenic 40.0%
!! GTGATGATTTTCAAGGCTGA+AGG + chr2_1:5840986-5841005 Msa0190330:CDS 40.0%
GAAATGGAAAGAGGCTTGAA+GGG + chr2_1:5841141-5841160 Msa0190330:intron 40.0%
TATGAGACTTCAGAGGATCA+AGG + chr2_1:5841178-5841197 Msa0190330:intron 40.0%
ATGAGACTTCAGAGGATCAA+GGG + chr2_1:5841179-5841198 Msa0190330:intron 40.0%
GATGTTTCGTTAACTACAGG+GGG + chr2_1:5841521-5841540 Msa0190330:intron 40.0%
ATGTTTCGTTAACTACAGGG+GGG + chr2_1:5841522-5841541 Msa0190330:intron 40.0%
GATAAACCTTGCAATTTCGG+GGG + chr2_1:5841550-5841569 Msa0190330:intron 40.0%
ATAAACCTTGCAATTTCGGG+GGG + chr2_1:5841551-5841570 Msa0190330:intron 40.0%
!!! CTCTCTTGTTTTGCAGTTCA+AGG + chr2_1:5842495-5842514 Msa0190330:intron 40.0%
CCAATAACATCATTTCCAGC+AGG - chr2_1:5842521-5842540 None:intergenic 40.0%
CCTGCTGGAAATGATGTTAT+TGG + chr2_1:5842518-5842537 Msa0190330:CDS 40.0%
GTCAGCACAAATCCAATCAA+TGG - chr2_1:5842646-5842665 None:intergenic 40.0%
AACCCAGTAAACACTATCTC+TGG + chr2_1:5842799-5842818 Msa0190330:CDS 40.0%
CACCAGAGATAGTGTTTACT+GGG - chr2_1:5842804-5842823 None:intergenic 40.0%
GGAGCCTTAACTATCTTGTA+TGG - chr2_1:5842889-5842908 None:intergenic 40.0%
! ATGCATGGGTTGAAGCTAAT+GGG + chr2_1:5842917-5842936 Msa0190330:CDS 40.0%
CAGTATTCACCTAGTCAGAT+TGG + chr2_1:5842943-5842962 Msa0190330:CDS 40.0%
GAAACTGCAGAAGCTTATCT+TGG + chr2_1:5842991-5843010 Msa0190330:CDS 40.0%
TTTCAATGATGCTCAAAGGC+AGG + chr2_1:5843053-5843072 Msa0190330:CDS 40.0%
AAAGATGCTGGTAGAATTGC+AGG + chr2_1:5843081-5843100 Msa0190330:CDS 40.0%
TATGGGATGACAAACAAGGA+AGG + chr2_1:5843153-5843172 Msa0190330:CDS 40.0%
!!! CTCATTGCTGTTTTTGACCT+TGG + chr2_1:5843177-5843196 Msa0190330:CDS 40.0%
!!! ATTGCTGTTTTTGACCTTGG+TGG + chr2_1:5843180-5843199 Msa0190330:CDS 40.0%
CTCATACTATTCCTTCAGAC+AGG - chr2_1:5843291-5843310 None:intergenic 40.0%
GTCTGAAGGAATAGTATGAG+AGG + chr2_1:5843291-5843310 Msa0190330:intron 40.0%
AACAAACGGTGACACTTTCT+TGG + chr2_1:5843355-5843374 Msa0190330:CDS 40.0%
ACAAACGGTGACACTTTCTT+GGG + chr2_1:5843356-5843375 Msa0190330:CDS 40.0%
!! CAATGCCTTGTTGGATTTTC+TGG + chr2_1:5843394-5843413 Msa0190330:CDS 40.0%
TTCTGGTGAATGAGTTCAAG+AGG + chr2_1:5843411-5843430 Msa0190330:CDS 40.0%
AGGCAAGCTTATCCTTTGAA+AGG - chr2_1:5843451-5843470 None:intergenic 40.0%
AAGAACTTCGTCAATGTCCT+TGG - chr2_1:5843690-5843709 None:intergenic 40.0%
ACGAAGTTCTTCTTGTTGGA+GGG + chr2_1:5843699-5843718 Msa0190330:CDS 40.0%
! GAGGTGGTTTCGTCAATTTT+TGG + chr2_1:5843746-5843765 Msa0190330:CDS 40.0%
TTTGGCAAGTCTCCTTGTAA+AGG + chr2_1:5843764-5843783 Msa0190330:CDS 40.0%
GATGTTACACCACTCTCTTT+GGG + chr2_1:5843872-5843891 Msa0190330:CDS 40.0%
!! CTCTTTGGGTATTGAGACTT+TGG + chr2_1:5843886-5843905 Msa0190330:CDS 40.0%
CTTTGGGTGGTATCTTTACA+AGG + chr2_1:5843903-5843922 Msa0190330:CDS 40.0%
!! AACAATCAGCAGTGGATTGA+AGG - chr2_1:5843976-5843995 None:intergenic 40.0%
AATGTGTGCGTAATGAGTGT+GGG - chr2_1:5844145-5844164 None:intergenic 40.0%
AAATGTGTGCGTAATGAGTG+TGG - chr2_1:5844146-5844165 None:intergenic 40.0%
! GTTTCCGAGTTTCCCATTTT+TGG + chr2_1:5844312-5844331 Msa0190330:intron 40.0%
! GTTTCCGAGTTTCCCATTTT+TGG + chr2_1:5844312-5844331 Msa0190330:intron 40.0%
GCTGACAATCAAACACAAGT+AGG + chr2_1:5844790-5844809 Msa0190330:CDS 40.0%
! TCAAAGTGTTACAAGGTGAG+CGG + chr2_1:5844815-5844834 Msa0190330:CDS 40.0%
CTTGGAGAATTTGAGCTTGT+TGG + chr2_1:5844862-5844881 Msa0190330:CDS 40.0%
ACCTTTGACATTGATGCCAA+CGG + chr2_1:5844925-5844944 Msa0190330:CDS 40.0%
CGATCAGACTCTTTCTTTCT+TGG - chr2_1:5845083-5845102 None:intergenic 40.0%
TCTTCTCCCTGTATTCACTT+AGG - chr2_1:5845152-5845171 None:intergenic 40.0%
! TTCTGATTTGAGAAGTGCGA+TGG + chr2_1:5845209-5845228 Msa0190330:CDS 40.0%
! ATTTGAGAAGTGCGATGGAT+GGG + chr2_1:5845214-5845233 Msa0190330:CDS 40.0%
GAAACTTGATGCTGCAAACA+AGG + chr2_1:5845260-5845279 Msa0190330:CDS 40.0%
CAATTGGAGGATAAACCACT+AGG - chr2_1:5845584-5845603 None:intergenic 40.0%
TTGCTACTAGAGGGTAATAC+TGG + chr2_1:5845674-5845693 Msa0190330:three_prime_UTR 40.0%
GACTGTATCTTATGTTGGGT+TGG + chr2_1:5845789-5845808 Msa0190330:three_prime_UTR 40.0%
ACGTGTGATGCTGCATTTGT+GGG - chr2_1:5840873-5840892 None:intergenic 45.0%
AAGGAACCGGAATCTTCATC+AGG - chr2_1:5841070-5841089 None:intergenic 45.0%
GATGAAGATTCCGGTTCCTT+TGG + chr2_1:5841070-5841089 Msa0190330:CDS 45.0%
TTTCCTCTGCTTAGGAGTGA+TGG + chr2_1:5841119-5841138 Msa0190330:intron 45.0%
TTTCCATCACTCCTAAGCAG+AGG - chr2_1:5841125-5841144 None:intergenic 45.0%
! CTGCTTAGGAGTGATGGAAA+TGG + chr2_1:5841125-5841144 Msa0190330:intron 45.0%
! GGAGTGATGGAAATGGAAAG+AGG + chr2_1:5841132-5841151 Msa0190330:intron 45.0%
GGAAATGGAAAGAGGCTTGA+AGG + chr2_1:5841140-5841159 Msa0190330:intron 45.0%
!! TGCTTGCTATGAGACTTCAG+AGG + chr2_1:5841171-5841190 Msa0190330:intron 45.0%
TAACTGCCACATCAGCATGT+TGG + chr2_1:5841437-5841456 Msa0190330:intron 45.0%
TGGATGGAGGAAATTAACGG+AGG + chr2_1:5841457-5841476 Msa0190330:intron 45.0%
GGATGGAGGAAATTAACGGA+GGG + chr2_1:5841458-5841477 Msa0190330:intron 45.0%
GATGGAGGAAATTAACGGAG+GGG + chr2_1:5841459-5841478 Msa0190330:intron 45.0%
ATGGAGGAAATTAACGGAGG+GGG + chr2_1:5841460-5841479 Msa0190330:intron 45.0%
TAAACCTTGCAATTTCGGGG+GGG + chr2_1:5841552-5841571 Msa0190330:intron 45.0%
AACAACGAGCCTGTTTGGAT+TGG - chr2_1:5841952-5841971 None:intergenic 45.0%
CAACAAACAACGAGCCTGTT+TGG - chr2_1:5841957-5841976 None:intergenic 45.0%
AACACTAAGCCTGCACATGT+AGG + chr2_1:5842376-5842395 Msa0190330:CDS 45.0%
CAATTGTGACCTACATGTGC+AGG - chr2_1:5842388-5842407 None:intergenic 45.0%
CTGCACATGTAGGTCACAAT+TGG + chr2_1:5842386-5842405 Msa0190330:CDS 45.0%
CAAGTTTGTCTCGACCATTC+AGG + chr2_1:5842410-5842429 Msa0190330:CDS 45.0%
TGGTTGCCTTCTCTCAGAAA+GGG + chr2_1:5842734-5842753 Msa0190330:CDS 45.0%
GCACCAGAGATAGTGTTTAC+TGG - chr2_1:5842805-5842824 None:intergenic 45.0%
CTTGATTGGTAGGCGATTTG+AGG + chr2_1:5842831-5842850 Msa0190330:CDS 45.0%
TCAACCCATGCATCTCCATT+TGG - chr2_1:5842910-5842929 None:intergenic 45.0%
! GATGCATGGGTTGAAGCTAA+TGG + chr2_1:5842916-5842935 Msa0190330:CDS 45.0%
!! ACAAAGGCACCAATCTGACT+AGG - chr2_1:5842955-5842974 None:intergenic 45.0%
TGGTAGAATTGCAGGTCTTG+AGG + chr2_1:5843089-5843108 Msa0190330:CDS 45.0%
! TATGAAAGTGCAGCAGCAGT+GGG - chr2_1:5843135-5843154 None:intergenic 45.0%
! ATATGAAAGTGCAGCAGCAG+TGG - chr2_1:5843136-5843155 None:intergenic 45.0%
ACTGCTGCTGCACTTTCATA+TGG + chr2_1:5843135-5843154 Msa0190330:CDS 45.0%
CTGCTGCTGCACTTTCATAT+GGG + chr2_1:5843136-5843155 Msa0190330:CDS 45.0%
CATCAAATGTTCCACCACCA+AGG - chr2_1:5843197-5843216 None:intergenic 45.0%
AGGATAAGCTTGCCTTGCAA+AGG + chr2_1:5843456-5843475 Msa0190330:CDS 45.0%
GATGCATCAGCAGTGATGAA+AGG - chr2_1:5843548-5843567 None:intergenic 45.0%
TTCATCACTGCTGATGCATC+TGG + chr2_1:5843548-5843567 Msa0190330:CDS 45.0%
TCCATGTCAGAGCTGTTTGA+AGG + chr2_1:5843649-5843668 Msa0190330:CDS 45.0%
! TCCTTCAAACAGCTCTGACA+TGG - chr2_1:5843653-5843672 None:intergenic 45.0%
GACGAAGTTCTTCTTGTTGG+AGG + chr2_1:5843698-5843717 Msa0190330:CDS 45.0%
AAATTGACGAAACCACCTCC+TGG - chr2_1:5843745-5843764 None:intergenic 45.0%
TGTCAAAGAGCTCCTACTCT+TGG + chr2_1:5843850-5843869 Msa0190330:CDS 45.0%
GTGGTGTAACATCCAAGAGT+AGG - chr2_1:5843865-5843884 None:intergenic 45.0%
GGATGTTACACCACTCTCTT+TGG + chr2_1:5843871-5843890 Msa0190330:CDS 45.0%
GTCTCAATACCCAAAGAGAG+TGG - chr2_1:5843884-5843903 None:intergenic 45.0%
!! TTGGGTATTGAGACTTTGGG+TGG + chr2_1:5843890-5843909 Msa0190330:CDS 45.0%
ATGTGTGCGTAATGAGTGTG+GGG - chr2_1:5844144-5844163 None:intergenic 45.0%
! CAAAGTGTTACAAGGTGAGC+GGG + chr2_1:5844816-5844835 Msa0190330:CDS 45.0%
GCTTCCGACAACAAAATGCT+TGG + chr2_1:5844844-5844863 Msa0190330:CDS 45.0%
! TCAATCTGAGGCATACCTCT+GGG - chr2_1:5844901-5844920 None:intergenic 45.0%
TCAAAGGTGACCTCAATCTG+AGG - chr2_1:5844913-5844932 None:intergenic 45.0%
ACCGTTGGCATCAATGTCAA+AGG - chr2_1:5844929-5844948 None:intergenic 45.0%
AGACACGGTAACAATACCGT+TGG - chr2_1:5844944-5844963 None:intergenic 45.0%
TATTGTTACCGTGTCTGCCA+AGG + chr2_1:5844948-5844967 Msa0190330:CDS 45.0%
!! AATTTGCTGCTCTTTGCCAG+TGG - chr2_1:5844980-5844999 None:intergenic 45.0%
GTCTTTCTGAGCATGCAACT+CGG - chr2_1:5845061-5845080 None:intergenic 45.0%
CTCGATTTCCTTAGCCACTT+CGG - chr2_1:5845181-5845200 None:intergenic 45.0%
! GATTTGAGAAGTGCGATGGA+TGG + chr2_1:5845213-5845232 Msa0190330:CDS 45.0%
! TTTGAGAAGTGCGATGGATG+GGG + chr2_1:5845215-5845234 Msa0190330:CDS 45.0%
TGACATGTGCTCTCCAATCT+TGG - chr2_1:5845292-5845311 None:intergenic 45.0%
! AAGATTGGAGAGCACATGTC+AGG + chr2_1:5845291-5845310 Msa0190330:CDS 45.0%
TCCAGAGGCAGAATATGAAG+AGG + chr2_1:5845365-5845384 Msa0190330:CDS 45.0%
ACCTCTTCATATTCTGCCTC+TGG - chr2_1:5845369-5845388 None:intergenic 45.0%
TGAAGAAGTGAGACTCCTAG+TGG + chr2_1:5845388-5845407 Msa0190330:exon 45.0%
CACGTGTGATGCTGCATTTG+TGG - chr2_1:5840874-5840893 None:intergenic 50.0%
TAGGGTCGTTTCCTCTGCTT+AGG + chr2_1:5841111-5841130 Msa0190330:intron 50.0%
! AAAAGGCATGCCACGTCAGA+GGG - chr2_1:5841387-5841406 None:intergenic 50.0%
! GCATGCCTTTTCTGACCATG+TGG + chr2_1:5841396-5841415 Msa0190330:intron 50.0%
CACTGCCACATGGTCAGAAA+AGG - chr2_1:5841404-5841423 None:intergenic 50.0%
TGCCACATCAGCATGTTGGA+TGG + chr2_1:5841441-5841460 Msa0190330:intron 50.0%
CTCCATCCAACATGCTGATG+TGG - chr2_1:5841446-5841465 None:intergenic 50.0%
CACATCAGCATGTTGGATGG+AGG + chr2_1:5841444-5841463 Msa0190330:intron 50.0%
TGGAGGAAATTAACGGAGGG+GGG + chr2_1:5841461-5841480 Msa0190330:intron 50.0%
AATACCCCCCCGAAATTGCA+AGG - chr2_1:5841559-5841578 None:intergenic 50.0%
!! TGCAATTTCGGGGGGGTATT+TGG + chr2_1:5841559-5841578 Msa0190330:intron 50.0%
! TTTTGCAGTTCAAGGCCTGC+TGG + chr2_1:5842503-5842522 Msa0190330:intron 50.0%
TGCACGAACTACACCATCTG+TGG + chr2_1:5842714-5842733 Msa0190330:CDS 50.0%
TGAGAGAAGGCAACCACAGA+TGG - chr2_1:5842730-5842749 None:intergenic 50.0%
GTGGTTGCCTTCTCTCAGAA+AGG + chr2_1:5842733-5842752 Msa0190330:CDS 50.0%
GGTTGCCTTCTCTCAGAAAG+GGG + chr2_1:5842735-5842754 Msa0190330:CDS 50.0%
GTTAGTTACAGCCTGACGCT+TGG - chr2_1:5842782-5842801 None:intergenic 50.0%
AGGCTCCAAATGGAGATGCA+TGG + chr2_1:5842902-5842921 Msa0190330:CDS 50.0%
GGCTCCAAATGGAGATGCAT+GGG + chr2_1:5842903-5842922 Msa0190330:CDS 50.0%
AGGCAGGCAACAAAAGATGC+TGG + chr2_1:5843069-5843088 Msa0190330:CDS 50.0%
!!! GCTGTTTTTGACCTTGGTGG+TGG + chr2_1:5843183-5843202 Msa0190330:CDS 50.0%
AACGGTGACACTTTCTTGGG+AGG + chr2_1:5843359-5843378 Msa0190330:CDS 50.0%
TGACACTTTCTTGGGAGGAG+AGG + chr2_1:5843364-5843383 Msa0190330:CDS 50.0%
GGACTTCGACAATGCCTTGT+TGG + chr2_1:5843385-5843404 Msa0190330:CDS 50.0%
AGCTTCACGAAGCCTTTGCA+AGG - chr2_1:5843471-5843490 None:intergenic 50.0%
! GAAACCACCTCCTGGACTTT+TGG - chr2_1:5843737-5843756 None:intergenic 50.0%
TCCTGATGAGGCAGTTGCAA+TGG + chr2_1:5843793-5843812 Msa0190330:CDS 50.0%
CCTGATGAGGCAGTTGCAAT+GGG + chr2_1:5843794-5843813 Msa0190330:CDS 50.0%
GCTCTTTGACATCTCCACGT+AGG - chr2_1:5843841-5843860 None:intergenic 50.0%
TGTGTGCGTAATGAGTGTGG+GGG - chr2_1:5844143-5844162 None:intergenic 50.0%
GTTACAAGGTGAGCGGGAAA+TGG + chr2_1:5844822-5844841 Msa0190330:CDS 50.0%
! CTCAATCTGAGGCATACCTC+TGG - chr2_1:5844902-5844921 None:intergenic 50.0%
! CAGAGGTATGCCTCAGATTG+AGG + chr2_1:5844900-5844919 Msa0190330:CDS 50.0%
! TTTGCCAGTGGACTTGTCCT+TGG - chr2_1:5844968-5844987 None:intergenic 50.0%
ATTTCCTTAGCCACTTCGGC+AGG - chr2_1:5845177-5845196 None:intergenic 50.0%
CGAAGTGGCTAAGGAAATCG+AGG + chr2_1:5845179-5845198 Msa0190330:CDS 50.0%
AACAAGGCCGTCTCCAAGAT+TGG + chr2_1:5845276-5845295 Msa0190330:CDS 50.0%
GTGCTCTCCAATCTTGGAGA+CGG - chr2_1:5845286-5845305 None:intergenic 50.0%
! ATTGGAGAGCACATGTCAGG+TGG + chr2_1:5845294-5845313 Msa0190330:CDS 50.0%
!! ATGTCAGGTGGCTCTAGTAG+TGG + chr2_1:5845306-5845325 Msa0190330:CDS 50.0%
TCTAGTAGTGGTCCCTCATC+TGG + chr2_1:5845318-5845337 Msa0190330:CDS 50.0%
CCTTGAGAACCACCAGATGA+GGG - chr2_1:5845333-5845352 None:intergenic 50.0%
ACCTTGAGAACCACCAGATG+AGG - chr2_1:5845334-5845353 None:intergenic 50.0%
TCATCTGGTGGTTCTCAAGG+TGG + chr2_1:5845333-5845352 Msa0190330:CDS 50.0%
CATCTGGTGGTTCTCAAGGT+GGG + chr2_1:5845334-5845353 Msa0190330:CDS 50.0%
ATCTGGTGGTTCTCAAGGTG+GGG + chr2_1:5845335-5845354 Msa0190330:CDS 50.0%
!! GACTCCTAGTGGTTTCTAGC+TGG + chr2_1:5845399-5845418 Msa0190330:three_prime_UTR 50.0%
TCAATTACCCCCCTCTGACG+TGG + chr2_1:5841374-5841393 Msa0190330:intron 55.0%
! AAAGGCATGCCACGTCAGAG+GGG - chr2_1:5841386-5841405 None:intergenic 55.0%
! GAAAAGGCATGCCACGTCAG+AGG - chr2_1:5841388-5841407 None:intergenic 55.0%
! CAGCTCCCCTTTCTGAGAGA+AGG - chr2_1:5842743-5842762 None:intergenic 55.0%
CAGAAAGGGGAGCTGCTTGT+AGG + chr2_1:5842748-5842767 Msa0190330:CDS 55.0%
! TCTGGTGCCAAGCGCTTGAT+TGG + chr2_1:5842817-5842836 Msa0190330:CDS 55.0%
GTGCCAAGCGCTTGATTGGT+AGG + chr2_1:5842821-5842840 Msa0190330:CDS 55.0%
TCGCCTACCAATCAAGCGCT+TGG - chr2_1:5842827-5842846 None:intergenic 55.0%
GACTCGTGTGCCAAAAGTCC+AGG + chr2_1:5843724-5843743 Msa0190330:CDS 55.0%
TCGTGTGCCAAAAGTCCAGG+AGG + chr2_1:5843727-5843746 Msa0190330:CDS 55.0%
TGTGCCAAAAGTCCAGGAGG+TGG + chr2_1:5843730-5843749 Msa0190330:CDS 55.0%
CCCATTGCAACTGCCTCATC+AGG - chr2_1:5843797-5843816 None:intergenic 55.0%
! GTAATGAGTGTGGGGGTGTG+GGG - chr2_1:5844136-5844155 None:intergenic 55.0%
! CGTAATGAGTGTGGGGGTGT+GGG - chr2_1:5844137-5844156 None:intergenic 55.0%
CAGCTGCCGTTGAAAAGACC+TGG - chr2_1:5844774-5844793 None:intergenic 55.0%
GGACTTGTCCTTGGCAGACA+CGG - chr2_1:5844959-5844978 None:intergenic 55.0%
TCTGCCAAGGACAAGTCCAC+TGG + chr2_1:5844961-5844980 Msa0190330:CDS 55.0%
GAGCATGCAACTCGGCTTCT+TGG - chr2_1:5845053-5845072 None:intergenic 55.0%
GGAGAAGATACCTGCCGAAG+TGG + chr2_1:5845164-5845183 Msa0190330:CDS 55.0%
GATACCTGCCGAAGTGGCTA+AGG + chr2_1:5845170-5845189 Msa0190330:CDS 55.0%
AGTAGTGGTCCCTCATCTGG+TGG + chr2_1:5845321-5845340 Msa0190330:CDS 55.0%
CCCTCATCTGGTGGTTCTCA+AGG + chr2_1:5845330-5845349 Msa0190330:CDS 55.0%
!! CATATTCTGCCTCTGGAGCC+TGG - chr2_1:5845362-5845381 None:intergenic 55.0%
GCGTCCAGCTAGAAACCACT+AGG - chr2_1:5845406-5845425 None:intergenic 55.0%
AAGGCATGCCACGTCAGAGG+GGG - chr2_1:5841385-5841404 None:intergenic 60.0%
ACCATGTGGCAGTGCCACGT+GGG + chr2_1:5841410-5841429 Msa0190330:intron 60.0%
GTGGCAGTTAACTGCCCACG+TGG - chr2_1:5841427-5841446 None:intergenic 60.0%
GTTACAGCCTGACGCTTGGC+TGG - chr2_1:5842778-5842797 None:intergenic 60.0%
TGCAATGGGAGCAGCACTCC+AGG + chr2_1:5843808-5843827 Msa0190330:CDS 60.0%
GCAATGGGAGCAGCACTCCA+GGG + chr2_1:5843809-5843828 Msa0190330:CDS 60.0%
CTCCAGGGTGGTATCCTACG+TGG + chr2_1:5843824-5843843 Msa0190330:CDS 60.0%
CTCCACGTAGGATACCACCC+TGG - chr2_1:5843829-5843848 None:intergenic 60.0%
GCGTAATGAGTGTGGGGGTG+TGG - chr2_1:5844138-5844157 None:intergenic 60.0%
! TACCTCTGGGAGCAGGAGGA+AGG - chr2_1:5844888-5844907 None:intergenic 60.0%
! TGAGGCATACCTCTGGGAGC+AGG - chr2_1:5844895-5844914 None:intergenic 60.0%
TGGTTCTCAAGGTGGGGACC+AGG + chr2_1:5845341-5845360 Msa0190330:CDS 60.0%
AGGCATGCCACGTCAGAGGG+GGG - chr2_1:5841384-5841403 None:intergenic 65.0%
GACCATGTGGCAGTGCCACG+TGG + chr2_1:5841409-5841428 Msa0190330:intron 65.0%
AGGCACACCAGCCAAGCGTC+AGG + chr2_1:5842768-5842787 Msa0190330:CDS 65.0%
ATGGGAGCAGCACTCCAGGG+TGG + chr2_1:5843812-5843831 Msa0190330:CDS 65.0%
! GGCATACCTCTGGGAGCAGG+AGG - chr2_1:5844892-5844911 None:intergenic 65.0%
GCCCACGTGGCACTGCCACA+TGG - chr2_1:5841414-5841433 None:intergenic 70.0%
! GTGGGGGTGTGGGGTGTGGT+GGG - chr2_1:5844127-5844146 None:intergenic 70.0%
! TGTGGGGGTGTGGGGTGTGG+TGG - chr2_1:5844128-5844147 None:intergenic 70.0%
! GAGTGTGGGGGTGTGGGGTG+TGG - chr2_1:5844131-5844150 None:intergenic 70.0%
GGCCTTCCTCCTGCTCCCAG+AGG + chr2_1:5844883-5844902 Msa0190330:CDS 70.0%
AGGTGGGGACCAGGCTCCAG+AGG + chr2_1:5845350-5845369 Msa0190330:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 5840821 5845812 5840821 ID=Msa0190330;Name=Msa0190330
chr2_1 mRNA 5840821 5845812 5840821 ID=Msa0190330-mRNA-1;Parent=Msa0190330;Name=Msa0190330-mRNA-1;_AED=0.13;_eAED=0.14;_QI=0|0.8|0.83|1|1|1|6|414|749
chr2_1 exon 5840821 5841114 5840821 ID=Msa0190330-mRNA-1:exon:2622;Parent=Msa0190330-mRNA-1
chr2_1 exon 5842367 5842431 5842367 ID=Msa0190330-mRNA-1:exon:2623;Parent=Msa0190330-mRNA-1
chr2_1 exon 5842511 5842589 5842511 ID=Msa0190330-mRNA-1:exon:2624;Parent=Msa0190330-mRNA-1
chr2_1 exon 5842685 5843251 5842685 ID=Msa0190330-mRNA-1:exon:2625;Parent=Msa0190330-mRNA-1
chr2_1 exon 5843347 5843967 5843347 ID=Msa0190330-mRNA-1:exon:2626;Parent=Msa0190330-mRNA-1
chr2_1 exon 5844775 5845812 5844775 ID=Msa0190330-mRNA-1:exon:2627;Parent=Msa0190330-mRNA-1
chr2_1 CDS 5840821 5841114 5840821 ID=Msa0190330-mRNA-1:cds;Parent=Msa0190330-mRNA-1
chr2_1 CDS 5842367 5842431 5842367 ID=Msa0190330-mRNA-1:cds;Parent=Msa0190330-mRNA-1
chr2_1 CDS 5842511 5842589 5842511 ID=Msa0190330-mRNA-1:cds;Parent=Msa0190330-mRNA-1
chr2_1 CDS 5842685 5843251 5842685 ID=Msa0190330-mRNA-1:cds;Parent=Msa0190330-mRNA-1
chr2_1 CDS 5843347 5843967 5843347 ID=Msa0190330-mRNA-1:cds;Parent=Msa0190330-mRNA-1
chr2_1 CDS 5844775 5845398 5844775 ID=Msa0190330-mRNA-1:cds;Parent=Msa0190330-mRNA-1
chr2_1 three_prime_UTR 5845399 5845812 5845399 ID=Msa0190330-mRNA-1:three_prime_utr;Parent=Msa0190330-mRNA-1
Gene Sequence

>Msa0190330

ATGACCAAGATTGTTCTTCCAATCAAGAAAAGAAAGCCAGAGATACAAACCCACAAATGCAGCATCACACGTGTGTCTGCAACATCACCATCACCAAAACTCTTAAACAATGCAGACCAGAAGAGCAAAAGCATCATCACAGAAGAATTCAAAGTTGCTTTGCATGTGATGATTTTCAAGGCTGAAGGAATCGACAACCCCACAAATTATCCAAGTGTTAACAACAGAGCTTACAATTGGTTAAAGCCTGATGAAGATTCCGGTTCCTTTGGAGTTTTATCAACGAAAAGTAGGTTGATAGGTAACACTAAGCCTGCACATGTAGGTCACAATTGGTCAAGTTTGTCTCGACCATTCAGTTCAAGGCCTGCTGGAAATGATGTTATTGGTATTGATTTAGGTACAACTAATTCATGTGTTTCTGTTATGGAAGGAAAGAATCCAAAAGTCATCGAGAATTCTGAAGGTGCACGAACTACACCATCTGTGGTTGCCTTCTCTCAGAAAGGGGAGCTGCTTGTAGGCACACCAGCCAAGCGTCAGGCTGTAACTAACCCAGTAAACACTATCTCTGGTGCCAAGCGCTTGATTGGTAGGCGATTTGAGGACGCTCAAACTCAAAAAGAGATGAAAATGGTTCCATACAAGATAGTTAAGGCTCCAAATGGAGATGCATGGGTTGAAGCTAATGGGCAGCAGTATTCACCTAGTCAGATTGGTGCCTTTGTTCTCACCAAAATGAAGGAAACTGCAGAAGCTTATCTTGGAAAGAGCGTTTCTAAAGCTGTTATTACTGTTCCAGCTTATTTCAATGATGCTCAAAGGCAGGCAACAAAAGATGCTGGTAGAATTGCAGGTCTTGAGGTGCTTAGAATCATCAATGAGCCCACTGCTGCTGCACTTTCATATGGGATGACAAACAAGGAAGGTCTCATTGCTGTTTTTGACCTTGGTGGTGGAACATTTGATGTTTCCATTTTAGAAATTTCTAATGGTGTTTTTGAGGTGAAAGCAACAAACGGTGACACTTTCTTGGGAGGAGAGGACTTCGACAATGCCTTGTTGGATTTTCTGGTGAATGAGTTCAAGAGGTCTGAGAGTATTGACCTTTCAAAGGATAAGCTTGCCTTGCAAAGGCTTCGTGAAGCTGCTGAGAAAGCTAAGATAGAACTGTCTTCAACATCTCAGACAGAAATTAACTTGCCTTTCATCACTGCTGATGCATCTGGTGCAAAACATCTCAACATCACATTAACTAGATCCAAATTTGAGGCTCTAGTTAATAACTTGATCGAACGAACTAAGGCTCCATGTCAGAGCTGTTTGAAGGATGCAAATATTTCTACCAAGGACATTGACGAAGTTCTTCTTGTTGGAGGGATGACTCGTGTGCCAAAAGTCCAGGAGGTGGTTTCGTCAATTTTTGGCAAGTCTCCTTGTAAAGGAGTAAATCCTGATGAGGCAGTTGCAATGGGAGCAGCACTCCAGGGTGGTATCCTACGTGGAGATGTCAAAGAGCTCCTACTCTTGGATGTTACACCACTCTCTTTGGGTATTGAGACTTTGGGTGGTATCTTTACAAGGTTAATCAACCGCAACACTACTATTCCTACAAAAAAGAGTCAGGTCTTTTCAACGGCAGCTGACAATCAAACACAAGTAGGAATCAAAGTGTTACAAGGTGAGCGGGAAATGGCTTCCGACAACAAAATGCTTGGAGAATTTGAGCTTGTTGGCCTTCCTCCTGCTCCCAGAGGTATGCCTCAGATTGAGGTCACCTTTGACATTGATGCCAACGGTATTGTTACCGTGTCTGCCAAGGACAAGTCCACTGGCAAAGAGCAGCAAATTACTATTAAGTCATCTGGTGGGCTTTCTGATGATGAGATTCAAAAGATGGTCCAAGAAGCCGAGTTGCATGCTCAGAAAGACCAAGAAAGAAAGAGTCTGATCGATATTAGAAACTCTGCAGACACATCAATTTACAGCATTGAGAAAAGCCTAAGTGAATACAGGGAGAAGATACCTGCCGAAGTGGCTAAGGAAATCGAGGATGCTGTTTCTGATTTGAGAAGTGCGATGGATGGGGACAGTGCAGATGAAATCAAGTCGAAACTTGATGCTGCAAACAAGGCCGTCTCCAAGATTGGAGAGCACATGTCAGGTGGCTCTAGTAGTGGTCCCTCATCTGGTGGTTCTCAAGGTGGGGACCAGGCTCCAGAGGCAGAATATGAAGAGGTGAAGAAGTGA
Protein sequence

>Msa0190330

MTKIVLPIKKRKPEIQTHKCSITRVSATSPSPKLLNNADQKSKSIITEEFKVALHVMIFKAEGIDNPTNYPSVNNRAYNWLKPDEDSGSFGVLSTKSRLIGNTKPAHVGHNWSSLSRPFSSRPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFSQKGELLVGTPAKRQAVTNPVNTISGAKRLIGRRFEDAQTQKEMKMVPYKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLEVLRIINEPTAAALSYGMTNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRSESIDLSKDKLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNNLIERTKAPCQSCLKDANISTKDIDEVLLVGGMTRVPKVQEVVSSIFGKSPCKGVNPDEAVAMGAALQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKMLGEFELVGLPPAPRGMPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIKSSGGLSDDEIQKMVQEAELHAQKDQERKSLIDIRNSADTSIYSIEKSLSEYREKIPAEVAKEIEDAVSDLRSAMDGDSADEIKSKLDAANKAVSKIGEHMSGGSSSGPSSGGSQGGDQAPEAEYEEVKK*