AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0192070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0192070 MtrunA17_Chr2g0282131 99.051 316 3 0 1 316 1 316 0.0 642
Msa0192070 MtrunA17_Chr4g0040381 33.473 239 137 7 1 230 1 226 7.94e-35 134
Msa0192070 MtrunA17_Chr4g0035141 33.333 225 131 6 12 230 15 226 1.58e-32 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0192070 AT5G01230.1 92.508 307 22 1 1 306 1 307 0.0 586
Msa0192070 AT5G01230.2 100.000 57 0 0 1 57 1 57 5.69e-35 122
Msa0192070 AT4G25730.1 34.167 240 134 8 1 231 1 225 2.25e-34 133

Find 113 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGCAGTGATAATATTTA+TGG 0.099808 2_1:+7810368 Msa0192070:three_prime_UTR
CACTGATTCGTAGTGTTATT+TGG 0.132341 2_1:+7810332 Msa0192070:three_prime_UTR
AATGGGATATACACCTTATT+AGG 0.161234 2_1:-7810105 None:intergenic
ATCGGAAAAGTTTATAAGTT+TGG 0.192523 2_1:-7810494 None:intergenic
AGGAATAATTTGTATTCATT+TGG 0.244032 2_1:-7810457 None:intergenic
TTTGTTGGATAGTTTGATTC+AGG 0.249399 2_1:+7805022 Msa0192070:five_prime_UTR
AGAAGCCGATGAAGATCTTT+TGG 0.261957 2_1:-7809750 None:intergenic
CTAGCTTGCGGGGACCTTAC+TGG 0.280561 2_1:+7810129 Msa0192070:CDS
TCGGAAAAGTTTATAAGTTT+GGG 0.305571 2_1:-7810493 None:intergenic
GTTTGGGTTATGATTATCTA+AGG 0.309017 2_1:-7810477 None:intergenic
TTCATTGCGAAAATATTTAG+AGG 0.311679 2_1:+7808598 Msa0192070:CDS
ATATCCCATTTCTAGCTTGC+GGG 0.337528 2_1:+7810118 Msa0192070:CDS
GGAATAATTTGTATTCATTT+GGG 0.341056 2_1:-7810456 None:intergenic
AACTCTAGAGCTCTCTTGTA+AGG 0.363418 2_1:-7810240 None:intergenic
TGCTCCAGGCAGCTGGAGTC+AGG 0.367296 2_1:+7805640 Msa0192070:CDS
TGTGATTCTGTGAAATTTGT+TGG 0.370019 2_1:+7805007 Msa0192070:five_prime_UTR
GCATCAGGTGCAAGCTTGGC+TGG 0.374216 2_1:-7806603 None:intergenic
GCAAAGCTTCAAGGGATAAG+AGG 0.379131 2_1:+7805201 Msa0192070:CDS
ATTTAATTTGCATCATAAAC+CGG 0.395472 2_1:-7804845 None:intergenic
CTTTGCATCAGGTGCAAGCT+TGG 0.398733 2_1:-7806607 None:intergenic
TATCCACTGCCTAAAGTTGC+TGG 0.400318 2_1:+7810171 Msa0192070:CDS
CAAATACCTGACAGTATAGA+AGG 0.404894 2_1:-7808633 None:intergenic
AGGTCCCCGCAAGCTAGAAA+TGG 0.414251 2_1:-7810123 None:intergenic
GAGAAGGTTGGAAGTCCATC+AGG 0.420443 2_1:+7809774 Msa0192070:CDS
ACTAAAGTTCTTACCTATGC+TGG 0.426966 2_1:-7809335 None:intergenic
CAGCCAATGGCTCCGATTGA+AGG 0.431915 2_1:+7807106 Msa0192070:CDS
ATGGGATATACACCTTATTA+GGG 0.432233 2_1:-7810104 None:intergenic
ATAGTTTGATTCAGGAGAAA+AGG 0.443837 2_1:+7805030 Msa0192070:five_prime_UTR
TGGAAAACTTACTTTGCATC+AGG 0.444078 2_1:-7806618 None:intergenic
AAATCAATAGCTACAATAAG+AGG 0.445424 2_1:-7807082 None:intergenic
TATGTGCTGCTCCAGGCAGC+TGG 0.452462 2_1:+7805633 Msa0192070:CDS
TGCTTACTGCAAGTATGAGT+TGG 0.458021 2_1:-7808197 None:intergenic
AAACCATGGGCAAAGCTTCA+AGG 0.459913 2_1:+7805192 Msa0192070:exon
GAGTTTGCAGATTGTGTTAG+TGG 0.463559 2_1:+7810069 Msa0192070:intron
CATCGGCTTCTTGAGAAGGT+TGG 0.470461 2_1:+7809762 Msa0192070:CDS
CAACAAAAGACTCGGAAGAA+AGG 0.471356 2_1:-7810432 None:intergenic
TTCATCCATGTCATGAAGTC+CGG 0.472049 2_1:-7808163 None:intergenic
ATCAGTGGATATGCAAGATC+AGG 0.472705 2_1:-7810316 None:intergenic
TTACTGGATATGATTCTGAT+AGG 0.474435 2_1:+7810145 Msa0192070:CDS
ATCCCTTGAAGCTTTGCCCA+TGG 0.475121 2_1:-7805195 None:intergenic
GCTTACTGCAAGTATGAGTT+GGG 0.475427 2_1:-7808196 None:intergenic
TGAAGGTGTTATCCAGGTGC+AGG 0.479392 2_1:+7807123 Msa0192070:CDS
GGCTTTGCAAAAGTCACCAC+AGG 0.483167 2_1:-7809295 None:intergenic
TGCGAAAATATTTAGAGGAA+AGG 0.486906 2_1:+7808603 Msa0192070:CDS
ATCCACTGCCTAAAGTTGCT+GGG 0.488195 2_1:+7810172 Msa0192070:CDS
CCATCAGGGGTAGATGATAC+AGG 0.496409 2_1:+7809789 Msa0192070:CDS
AGCTATTGATTTGCAGCCAA+TGG 0.497084 2_1:+7807093 Msa0192070:CDS
TATATCCCATTTCTAGCTTG+CGG 0.497714 2_1:+7810117 Msa0192070:CDS
TCTTCATCGGCTTCTTGAGA+AGG 0.501095 2_1:+7809758 Msa0192070:CDS
AGTACCTGACTCCAGCTGCC+TGG 0.508337 2_1:-7805644 None:intergenic
ACACCTTCAATCGGAGCCAT+TGG 0.510050 2_1:-7807109 None:intergenic
TTGGATTGAATCCTTCTGGA+GGG 0.511479 2_1:-7809731 None:intergenic
GGGGCAATAGGAGGTTGTAC+TGG 0.511552 2_1:-7810216 None:intergenic
GTGGTTGGAAGGCCCTAATA+AGG 0.511729 2_1:+7810092 Msa0192070:CDS
GGTCCCCGCAAGCTAGAAAT+GGG 0.513086 2_1:-7810122 None:intergenic
TCCGATTGAAGGTGTTATCC+AGG 0.517786 2_1:+7807117 Msa0192070:CDS
TAGTTATATCACCCTGCACC+TGG 0.518978 2_1:-7807135 None:intergenic
CACAAGCCTTCTATACTGTC+AGG 0.519250 2_1:+7808627 Msa0192070:CDS
TATCAGAATCATATCCAGTA+AGG 0.519570 2_1:-7810143 None:intergenic
ATTGAAGAAGCCATGAACTT+AGG 0.519813 2_1:-7804900 None:intergenic
ATATGCAAGATCAGGAATCC+AGG 0.523232 2_1:-7810308 None:intergenic
CAGGTGCAAGCTTGGCTGGA+AGG 0.527605 2_1:-7806599 None:intergenic
ACTCTAGAGCTCTCTTGTAA+GGG 0.527637 2_1:-7810239 None:intergenic
TCAATCCAAAAGATCTTCAT+CGG 0.528148 2_1:+7809745 Msa0192070:CDS
GTAGATTTATGTGCTGCTCC+AGG 0.528472 2_1:+7805626 Msa0192070:CDS
TGTGTTAGTGGGTGGTTGGA+AGG 0.530748 2_1:+7810081 Msa0192070:CDS
ACCTGGATAACACCTTCAAT+CGG 0.534040 2_1:-7807118 None:intergenic
TGGATTGAATCCTTCTGGAG+GGG 0.538206 2_1:-7809730 None:intergenic
TACCGAAAAGCGAAAGAAGA+AGG 0.538413 2_1:+7805321 Msa0192070:CDS
GCCGACCTTGTTGTGTGCGA+TGG 0.542550 2_1:+7807896 Msa0192070:CDS
AACCATGGGCAAAGCTTCAA+GGG 0.544253 2_1:+7805193 Msa0192070:exon
AGTTTGCAGATTGTGTTAGT+GGG 0.550426 2_1:+7810070 Msa0192070:intron
CCTGTATCATCTACCCCTGA+TGG 0.551247 2_1:-7809789 None:intergenic
AGATTGTGTTAGTGGGTGGT+TGG 0.553179 2_1:+7810077 Msa0192070:intron
AGTAGTCGTAATTCCAGCAT+AGG 0.557095 2_1:+7809322 Msa0192070:CDS
TCCACTGCCTAAAGTTGCTG+GGG 0.574703 2_1:+7810173 Msa0192070:CDS
GAAAATTACTCCCCTCCAGA+AGG 0.574957 2_1:+7809720 Msa0192070:CDS
TTGCAGATTGTGTTAGTGGG+TGG 0.575776 2_1:+7810073 Msa0192070:intron
CTCTAGAGCTCTCTTGTAAG+GGG 0.577035 2_1:-7810238 None:intergenic
GAAAAGCGAAAGAAGAAGGT+TGG 0.578774 2_1:+7805325 Msa0192070:CDS
CAAAGCTTCAAGGGATAAGA+GGG 0.579751 2_1:+7805202 Msa0192070:CDS
CTCATGTACTGAAGGAAGGA+GGG 0.582274 2_1:+7808572 Msa0192070:CDS
AGAACTTGAAAATCTCTCCC+TGG 0.583460 2_1:+7810290 Msa0192070:CDS
GTGTGCGATGGTGCTCCTGA+TGG 0.586485 2_1:+7807908 Msa0192070:CDS
TATCCCATTTCTAGCTTGCG+GGG 0.586932 2_1:+7810119 Msa0192070:CDS
TAATGCTCGGACTGCTGAAG+TGG 0.587470 2_1:+7807156 Msa0192070:CDS
GTTTCTTAGGCAAGTAAGTG+AGG 0.591445 2_1:+7805166 Msa0192070:intron
AATTGTTACTCATGTACTGA+AGG 0.593299 2_1:+7808564 Msa0192070:CDS
GTTACTCATGTACTGAAGGA+AGG 0.596222 2_1:+7808568 Msa0192070:CDS
TTTGGATTGAATCCTTCTGG+AGG 0.598385 2_1:-7809732 None:intergenic
GAAGAAGCCATGAACTTAGG+AGG 0.598700 2_1:-7804897 None:intergenic
CTAGAGCTCTCTTGTAAGGG+GGG 0.605069 2_1:-7810236 None:intergenic
ATTTGGGACAACAAAAGACT+CGG 0.605473 2_1:-7810440 None:intergenic
AGAAGGTTGGAAGTCCATCA+GGG 0.611108 2_1:+7809775 Msa0192070:CDS
CAAATAACACTACGAATCAG+TGG 0.612508 2_1:-7810331 None:intergenic
ACTCATGTACTGAAGGAAGG+AGG 0.615741 2_1:+7808571 Msa0192070:CDS
ACATTATCAACATTATCCAT+CGG 0.623898 2_1:-7810512 None:intergenic
ACCATCGCACACAACAAGGT+CGG 0.624891 2_1:-7807897 None:intergenic
AGTAAGTGAGGAATAAACCA+TGG 0.627845 2_1:+7805178 Msa0192070:exon
TATGCAAGATCAGGAATCCA+GGG 0.628400 2_1:-7810307 None:intergenic
GAGCACCATCGCACACAACA+AGG 0.633636 2_1:-7807901 None:intergenic
TCTAGAGCTCTCTTGTAAGG+GGG 0.635566 2_1:-7810237 None:intergenic
ATAATATGAGTAAAATTGTG+AGG 0.639750 2_1:+7810577 Msa0192070:three_prime_UTR
GAAGGTGTTATCCAGGTGCA+GGG 0.645167 2_1:+7807124 Msa0192070:CDS
AGGGTGATATAACTAATGCT+CGG 0.647655 2_1:+7807143 Msa0192070:CDS
GTAAGTGAGGAATAAACCAT+GGG 0.651712 2_1:+7805179 Msa0192070:exon
AAAGACTCGGAAGAAAGGAA+AGG 0.655032 2_1:-7810427 None:intergenic
GCTTTGCAAAAGTCACCACA+GGG 0.664958 2_1:-7809294 None:intergenic
TAGAGCTCTCTTGTAAGGGG+GGG 0.669752 2_1:-7810235 None:intergenic
CCACTGCCTAAAGTTGCTGG+GGG 0.698850 2_1:+7810174 Msa0192070:CDS
AGAATCTCGTACAGTGTACG+AGG 0.708517 2_1:-7804925 None:intergenic
AGTTACCGGACTTCATGACA+TGG 0.714363 2_1:+7808158 Msa0192070:intron
GAAGGTTGGAAGTCCATCAG+GGG 0.734678 2_1:+7809776 Msa0192070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATAAATGAAAACTTT+GGG - chr2_1:7806206-7806225 None:intergenic 10.0%
!!! TTTTATATAAATGAAAACTT+TGG - chr2_1:7806207-7806226 None:intergenic 10.0%
!!! TAAATTTTTAAAGTATTATC+CGG - chr2_1:7806552-7806571 None:intergenic 10.0%
!!! TGTTCTTTTTTTTTTTTTGT+TGG + chr2_1:7805248-7805267 Msa0192070:intron 15.0%
!!! TTTTTTTTTTGTTGGTTTTT+TGG + chr2_1:7805256-7805275 Msa0192070:intron 15.0%
!!! TTTTTTTTTGTTGGTTTTTT+GGG + chr2_1:7805257-7805276 Msa0192070:intron 15.0%
!! CTATATCTAATTATATATTC+AGG - chr2_1:7805503-7805522 None:intergenic 15.0%
!! AATTACATTTAAATGATACT+AGG - chr2_1:7805810-7805829 None:intergenic 15.0%
!!! CTTAAAGTGAATTATATTTT+AGG - chr2_1:7806053-7806072 None:intergenic 15.0%
!! CTAAAATATAATTCACTTTA+AGG + chr2_1:7806051-7806070 Msa0192070:intron 15.0%
!! TTATATAAATGAAAACTTTG+GGG - chr2_1:7806205-7806224 None:intergenic 15.0%
!!! TACTTTAAAAATTTATATGC+AGG + chr2_1:7806557-7806576 Msa0192070:intron 15.0%
!! GAAAAAAGAAAAAGAAATTA+AGG - chr2_1:7807552-7807571 None:intergenic 15.0%
!! AAAAAAAATAGTAACAAACA+AGG - chr2_1:7809363-7809382 None:intergenic 15.0%
!! TATTAGATTTGAATCTTTAA+CGG + chr2_1:7809583-7809602 Msa0192070:intron 15.0%
!!! ATTTAATTTGCATCATAAAC+CGG - chr2_1:7804848-7804867 None:intergenic 20.0%
!!! TTTTTTTTGTTGGTTTTTTG+GGG + chr2_1:7805258-7805277 Msa0192070:intron 20.0%
!!! GAAGAATTTAACATTTTTGA+AGG + chr2_1:7805384-7805403 Msa0192070:CDS 20.0%
!! ATAATTAAAATCAGCTTTCA+AGG - chr2_1:7805423-7805442 None:intergenic 20.0%
!! ATTCTTAAGATAAGTTTAAG+AGG - chr2_1:7805948-7805967 None:intergenic 20.0%
!!! AATATAATTCACTTTAAGGA+AGG + chr2_1:7806055-7806074 Msa0192070:intron 20.0%
!! TATATAAATGAAAACTTTGG+GGG - chr2_1:7806204-7806223 None:intergenic 20.0%
!! TAAAAAAGATAACACCATTA+CGG + chr2_1:7806386-7806405 Msa0192070:intron 20.0%
!!! AAAAGGATACTATAGTTTTA+AGG - chr2_1:7806731-7806750 None:intergenic 20.0%
!! CAATAAATTCAAAAGAAAAC+AGG - chr2_1:7806896-7806915 None:intergenic 20.0%
!! TTAATGTATTAGAATTGACA+TGG - chr2_1:7808076-7808095 None:intergenic 20.0%
!! TTGGTTGTAGTTTAAAAATT+TGG + chr2_1:7808122-7808141 Msa0192070:intron 20.0%
!!! TGTAACTATTTATCTCTTTT+AGG + chr2_1:7808244-7808263 Msa0192070:intron 20.0%
!!! TGATAGTTGATATTTCATTA+TGG + chr2_1:7808284-7808303 Msa0192070:intron 20.0%
!!! GGTGTATAGTTTAATTTAAA+CGG + chr2_1:7808439-7808458 Msa0192070:intron 20.0%
!! AGTTATAAAAGCTAACTAAA+AGG - chr2_1:7808756-7808775 None:intergenic 20.0%
!!! TCATTTCTGGAAATAAATTA+TGG + chr2_1:7808794-7808813 Msa0192070:intron 20.0%
!!! GACAAAATAATTGACTTTAA+AGG + chr2_1:7808962-7808981 Msa0192070:intron 20.0%
!! TGCTAAATAACTCATAATAA+AGG + chr2_1:7809179-7809198 Msa0192070:intron 20.0%
!! GCTAAATAACTCATAATAAA+GGG + chr2_1:7809180-7809199 Msa0192070:intron 20.0%
!! CTAAATAACTCATAATAAAG+GGG + chr2_1:7809181-7809200 Msa0192070:intron 20.0%
!!! GTATATGGAATTATGATTTT+TGG - chr2_1:7809239-7809258 None:intergenic 20.0%
!! AGTTTCTTTATGAATTGTTA+TGG + chr2_1:7809413-7809432 Msa0192070:intron 20.0%
!!! TCATGTATACTTAATTTTCA+TGG + chr2_1:7810019-7810038 Msa0192070:intron 20.0%
!!! GGAATAATTTGTATTCATTT+GGG - chr2_1:7810459-7810478 None:intergenic 20.0%
!!! AGGAATAATTTGTATTCATT+TGG - chr2_1:7810460-7810479 None:intergenic 20.0%
!!! GTTGTATGTTTTTGTTTCTT+AGG + chr2_1:7805153-7805172 Msa0192070:intron 25.0%
! TGATTTGATGTTAGCTAAAT+TGG + chr2_1:7805282-7805301 Msa0192070:intron 25.0%
! ATTACTATCTCTGCTAAAAA+TGG - chr2_1:7805471-7805490 None:intergenic 25.0%
! TGAAACTATAAGTAATACAG+TGG - chr2_1:7805573-7805592 None:intergenic 25.0%
! TGTAATTGACATGAATATCT+TGG + chr2_1:7805823-7805842 Msa0192070:intron 25.0%
! TAAGATAAGTTTAAGAGGAA+GGG - chr2_1:7805943-7805962 None:intergenic 25.0%
! TTAAGATAAGTTTAAGAGGA+AGG - chr2_1:7805944-7805963 None:intergenic 25.0%
!! AACAGCAAATGATTTTTGAT+GGG - chr2_1:7806362-7806381 None:intergenic 25.0%
!! AAACAGCAAATGATTTTTGA+TGG - chr2_1:7806363-7806382 None:intergenic 25.0%
! TATTGCCATGTATAAACAAT+AGG + chr2_1:7806472-7806491 Msa0192070:intron 25.0%
! ATTGCCATGTATAAACAATA+GGG + chr2_1:7806473-7806492 Msa0192070:intron 25.0%
!! ACTATAGTATCCTTTTATGT+TGG + chr2_1:7806735-7806754 Msa0192070:intron 25.0%
! ATAATTACGACCAACATAAA+AGG - chr2_1:7806748-7806767 None:intergenic 25.0%
! AAACAATGTTTAAAAGGATG+AGG - chr2_1:7806869-7806888 None:intergenic 25.0%
! GGAAGAAAACAATGTTTAAA+AGG - chr2_1:7806875-7806894 None:intergenic 25.0%
! TGCTGTATTATCTTATGTTA+AGG + chr2_1:7806952-7806971 Msa0192070:intron 25.0%
! AAATCAATAGCTACAATAAG+AGG - chr2_1:7807085-7807104 None:intergenic 25.0%
!!! TGTTTCTGCTCTAAAATTTA+TGG + chr2_1:7807408-7807427 Msa0192070:intron 25.0%
! AGTGAAATAATGAAAAGACA+TGG + chr2_1:7807617-7807636 Msa0192070:intron 25.0%
! ATACATTAACTCTGATATGT+AGG + chr2_1:7808087-7808106 Msa0192070:intron 25.0%
!! ATTTCATTATGGTTACCTTT+TGG + chr2_1:7808295-7808314 Msa0192070:intron 25.0%
! AACAAGCATATGTCTATTAA+AGG - chr2_1:7808362-7808381 None:intergenic 25.0%
! CGCATTTATTAGATTAGATA+AGG - chr2_1:7808404-7808423 None:intergenic 25.0%
! TTCATTGCGAAAATATTTAG+AGG + chr2_1:7808598-7808617 Msa0192070:CDS 25.0%
! TATAAAAGCTAACTAAAAGG+TGG - chr2_1:7808753-7808772 None:intergenic 25.0%
!! ATTACTTCCATTGTTTTCAA+AGG - chr2_1:7808845-7808864 None:intergenic 25.0%
!!! CAATTATTTTGTCAACCAAT+TGG - chr2_1:7808955-7808974 None:intergenic 25.0%
!!! AGTTATATTTTAACTCCTAC+AGG - chr2_1:7809040-7809059 None:intergenic 25.0%
! ATTTAGATATGATCATGAGT+AGG - chr2_1:7809118-7809137 None:intergenic 25.0%
! ACAAAAAGCAACTTAGTATA+TGG - chr2_1:7809254-7809273 None:intergenic 25.0%
!! ATTTTCCATAGCTTAGTAAT+TGG + chr2_1:7809440-7809459 Msa0192070:intron 25.0%
! ATCTAATAATTGCAAGTGTT+TGG - chr2_1:7809571-7809590 None:intergenic 25.0%
! TGATTAACAATCTACATGTA+GGG - chr2_1:7809923-7809942 None:intergenic 25.0%
! ATGATTAACAATCTACATGT+AGG - chr2_1:7809924-7809943 None:intergenic 25.0%
!!! TTAAAAAAAGCATCAACTCA+AGG + chr2_1:7810261-7810280 Msa0192070:CDS 25.0%
! TCTTGCAGTGATAATATTTA+TGG + chr2_1:7810368-7810387 Msa0192070:three_prime_UTR 25.0%
! TCGGAAAAGTTTATAAGTTT+GGG - chr2_1:7810496-7810515 None:intergenic 25.0%
! ATCGGAAAAGTTTATAAGTT+TGG - chr2_1:7810497-7810516 None:intergenic 25.0%
!! AAACTTATAAACTTTTCCGA+TGG + chr2_1:7810496-7810515 Msa0192070:three_prime_UTR 25.0%
! ACATTATCAACATTATCCAT+CGG - chr2_1:7810515-7810534 None:intergenic 25.0%
TAGAACACAAAAACGAATAC+AGG - chr2_1:7804981-7805000 None:intergenic 30.0%
TGTGATTCTGTGAAATTTGT+TGG + chr2_1:7805007-7805026 Msa0192070:five_prime_UTR 30.0%
TTTGTTGGATAGTTTGATTC+AGG + chr2_1:7805022-7805041 Msa0192070:five_prime_UTR 30.0%
ATAGTTTGATTCAGGAGAAA+AGG + chr2_1:7805030-7805049 Msa0192070:five_prime_UTR 30.0%
AATGTCTCAGAAATAGTGAA+AGG + chr2_1:7805528-7805547 Msa0192070:intron 30.0%
!!! TCAATTTCGTTCTTTTTTGC+AGG + chr2_1:7805590-7805609 Msa0192070:intron 30.0%
!!! CAATTTCGTTCTTTTTTGCA+GGG + chr2_1:7805591-7805610 Msa0192070:intron 30.0%
!!! AATTTCGTTCTTTTTTGCAG+GGG + chr2_1:7805592-7805611 Msa0192070:intron 30.0%
CAATTACCAAACACAAACTA+TGG + chr2_1:7805726-7805745 Msa0192070:intron 30.0%
ATCTTGGTTTAGATTTCTTC+TGG + chr2_1:7805839-7805858 Msa0192070:intron 30.0%
AAGATAAGTTTAAGAGGAAG+GGG - chr2_1:7805942-7805961 None:intergenic 30.0%
TAACTGATATCACAACACAA+AGG - chr2_1:7805987-7806006 None:intergenic 30.0%
GGATTTGAATTTAAACCTAG+AGG + chr2_1:7806076-7806095 Msa0192070:intron 30.0%
! AAACAATGATAATGACCTCT+AGG - chr2_1:7806094-7806113 None:intergenic 30.0%
!! GACTATTTCTAAGAAACAAG+TGG - chr2_1:7806307-7806326 None:intergenic 30.0%
ATGAAAACCAAATCAGACTT+AGG + chr2_1:7806409-7806428 Msa0192070:intron 30.0%
ATTCATACCTAAGTCTGATT+TGG - chr2_1:7806419-7806438 None:intergenic 30.0%
TTGCCATGTATAAACAATAG+GGG + chr2_1:7806474-7806493 Msa0192070:intron 30.0%
AACAAAGCATATAATCTCCA+TGG - chr2_1:7806641-7806660 None:intergenic 30.0%
ATGTCAATGAATGCATTTAC+AGG - chr2_1:7806691-7806710 None:intergenic 30.0%
GTAAATGCATTCATTGACAT+AGG + chr2_1:7806691-7806710 Msa0192070:intron 30.0%
! GTGATAATTAACAGAGTGTT+TGG - chr2_1:7806993-7807012 None:intergenic 30.0%
TCTAATTCTAATGACAAGAG+TGG - chr2_1:7807261-7807280 None:intergenic 30.0%
! AACAAAAACCTTTTTCCACT+AGG - chr2_1:7807475-7807494 None:intergenic 30.0%
CAAAAGAAAGCAGAAATATG+TGG - chr2_1:7807524-7807543 None:intergenic 30.0%
ATGAACTGAACAAAAGCAAT+TGG - chr2_1:7807574-7807593 None:intergenic 30.0%
AATAATGAAAAGACATGGTG+TGG + chr2_1:7807622-7807641 Msa0192070:intron 30.0%
GTCAAACTATACACATGAAT+TGG - chr2_1:7807686-7807705 None:intergenic 30.0%
!!! ATATAGGTCTTGCTTTTTTG+AGG + chr2_1:7807784-7807803 Msa0192070:intron 30.0%
! TATGCATTTTCTTTACCATC+AGG - chr2_1:7807926-7807945 None:intergenic 30.0%
TCAAATCATTTGTAGCTGTT+TGG - chr2_1:7807984-7808003 None:intergenic 30.0%
AGGGATAAATTTATTCTCGT+TGG - chr2_1:7808042-7808061 None:intergenic 30.0%
!! ATGTAGGCTTTTTCTCATTT+TGG + chr2_1:7808103-7808122 Msa0192070:intron 30.0%
CTAATTACTTACTTCTTGCA+GGG + chr2_1:7808535-7808554 Msa0192070:intron 30.0%
TAATTACTTACTTCTTGCAG+GGG + chr2_1:7808536-7808555 Msa0192070:intron 30.0%
AATTGTTACTCATGTACTGA+AGG + chr2_1:7808564-7808583 Msa0192070:CDS 30.0%
TGCGAAAATATTTAGAGGAA+AGG + chr2_1:7808603-7808622 Msa0192070:CDS 30.0%
TCCAATTCCTGAAATCTTAA+TGG - chr2_1:7808672-7808691 None:intergenic 30.0%
!! TGCTATTTCAAACAATGTGT+AGG - chr2_1:7808697-7808716 None:intergenic 30.0%
AATAAAGTGACACTCATTTC+TGG + chr2_1:7808781-7808800 Msa0192070:intron 30.0%
! TTCCAAACCTTTGAAAACAA+TGG + chr2_1:7808835-7808854 Msa0192070:intron 30.0%
! TTCCATTGTTTTCAAAGGTT+TGG - chr2_1:7808840-7808859 None:intergenic 30.0%
! TCCAGAGTTTTACCAAAATT+CGG + chr2_1:7808914-7808933 Msa0192070:intron 30.0%
!!! ATTGTTTCTGTTCCGAATTT+TGG - chr2_1:7808929-7808948 None:intergenic 30.0%
GTTGTATTTATCAAGAGAGT+AGG - chr2_1:7808998-7809017 None:intergenic 30.0%
ACTCATAATAAAGGGGAAAA+TGG + chr2_1:7809188-7809207 Msa0192070:intron 30.0%
AATAAAGGGGAAAATGGTAA+AGG + chr2_1:7809194-7809213 Msa0192070:intron 30.0%
AACTACCAATTACTAAGCTA+TGG - chr2_1:7809448-7809467 None:intergenic 30.0%
AAACAGCTAAATTCAACTAG+TGG - chr2_1:7809537-7809556 None:intergenic 30.0%
TAATAATTGCAAGTGTTTGG+AGG - chr2_1:7809568-7809587 None:intergenic 30.0%
! TAGTTATGAATCTTTTGACG+AGG + chr2_1:7809613-7809632 Msa0192070:intron 30.0%
TCAATCCAAAAGATCTTCAT+CGG + chr2_1:7809745-7809764 Msa0192070:CDS 30.0%
TAGATGATACAGGTATATGT+CGG + chr2_1:7809799-7809818 Msa0192070:intron 30.0%
ATGGGATATACACCTTATTA+GGG - chr2_1:7810107-7810126 None:intergenic 30.0%
AATGGGATATACACCTTATT+AGG - chr2_1:7810108-7810127 None:intergenic 30.0%
TATCAGAATCATATCCAGTA+AGG - chr2_1:7810146-7810165 None:intergenic 30.0%
TTACTGGATATGATTCTGAT+AGG + chr2_1:7810145-7810164 Msa0192070:CDS 30.0%
! GTTTGGGTTATGATTATCTA+AGG - chr2_1:7810480-7810499 None:intergenic 30.0%
! AGTGCTTTTGTAACGAAACT+GGG - chr2_1:7804873-7804892 None:intergenic 35.0%
! AAGTGCTTTTGTAACGAAAC+TGG - chr2_1:7804874-7804893 None:intergenic 35.0%
ATTGAAGAAGCCATGAACTT+AGG - chr2_1:7804903-7804922 None:intergenic 35.0%
AGTAAGTGAGGAATAAACCA+TGG + chr2_1:7805178-7805197 Msa0192070:exon 35.0%
GTAAGTGAGGAATAAACCAT+GGG + chr2_1:7805179-7805198 Msa0192070:exon 35.0%
!! TGTTAGCTAAATTGGTTTGC+AGG + chr2_1:7805290-7805309 Msa0192070:intron 35.0%
!! AACCTTCTTCTTTCGCTTTT+CGG - chr2_1:7805326-7805345 None:intergenic 35.0%
! TGAGAAGAAGTACAAGAGAA+TGG - chr2_1:7805689-7805708 None:intergenic 35.0%
AAGAAACCGTAATGTCAATG+AGG + chr2_1:7805773-7805792 Msa0192070:intron 35.0%
AGAAACCGTAATGTCAATGA+GGG + chr2_1:7805774-7805793 Msa0192070:intron 35.0%
TCTGGTTATCCTTCATTGAT+AGG + chr2_1:7805857-7805876 Msa0192070:intron 35.0%
CATAGACAACCTATCAATGA+AGG - chr2_1:7805869-7805888 None:intergenic 35.0%
AGATAAGTTTAAGAGGAAGG+GGG - chr2_1:7805941-7805960 None:intergenic 35.0%
!! AACACAAAGGAGTACTATAC+AGG - chr2_1:7805974-7805993 None:intergenic 35.0%
! TCTAGTACAACTGGATTTTC+AGG - chr2_1:7806282-7806301 None:intergenic 35.0%
AGTCTAACTATTAACAGACC+TGG + chr2_1:7806323-7806342 Msa0192070:intron 35.0%
!!! GATTTGGTTTTCATCCGTAA+TGG - chr2_1:7806403-7806422 None:intergenic 35.0%
TGCCATGTATAAACAATAGG+GGG + chr2_1:7806475-7806494 Msa0192070:intron 35.0%
TGGAAAACTTACTTTGCATC+AGG - chr2_1:7806621-7806640 None:intergenic 35.0%
! GATGCAAAGTAAGTTTTCCA+TGG + chr2_1:7806621-7806640 Msa0192070:intron 35.0%
ACCTCACATAACACATATCA+GGG - chr2_1:7806828-7806847 None:intergenic 35.0%
AGGGTGATATAACTAATGCT+CGG + chr2_1:7807143-7807162 Msa0192070:CDS 35.0%
ACATCTGTCAACAGAATTGA+AGG - chr2_1:7807199-7807218 None:intergenic 35.0%
TCAAATCGTGTTTCGAAATG+GGG - chr2_1:7807233-7807252 None:intergenic 35.0%
CTCAAATCGTGTTTCGAAAT+GGG - chr2_1:7807234-7807253 None:intergenic 35.0%
ACTCAAATCGTGTTTCGAAA+TGG - chr2_1:7807235-7807254 None:intergenic 35.0%
TCTCATGATGAATGAACTTG+AGG - chr2_1:7807321-7807340 None:intergenic 35.0%
! AAAACCTTTTTCCACTAGGT+CGG - chr2_1:7807471-7807490 None:intergenic 35.0%
TTGGCTAGACTTTATAATGC+AGG - chr2_1:7807667-7807686 None:intergenic 35.0%
ACATCACCAAAGGATCAATT+TGG - chr2_1:7807734-7807753 None:intergenic 35.0%
! TGTTTTCTCTTGTTCTGTTC+AGG + chr2_1:7807847-7807866 Msa0192070:intron 35.0%
! CAGGTCATTAGACATTTTGA+TGG + chr2_1:7807866-7807885 Msa0192070:intron 35.0%
!! TAGACATTTTGATGGTTGCA+AGG + chr2_1:7807874-7807893 Msa0192070:CDS 35.0%
TGACATGGAGCAACAAAAAA+GGG - chr2_1:7808061-7808080 None:intergenic 35.0%
TTGACATGGAGCAACAAAAA+AGG - chr2_1:7808062-7808081 None:intergenic 35.0%
!!! GCTTCATTTTTTGCAGTTAC+CGG + chr2_1:7808144-7808163 Msa0192070:intron 35.0%
!!! TATTTTTTGCGATCGCCAAA+AGG - chr2_1:7808313-7808332 None:intergenic 35.0%
GCGATCGCAAAAAATATTGA+AGG + chr2_1:7808317-7808336 Msa0192070:intron 35.0%
GCATATGTCTATTAAAGGTG+AGG - chr2_1:7808357-7808376 None:intergenic 35.0%
ATGAAACTCTACGCAAATCA+AGG - chr2_1:7808471-7808490 None:intergenic 35.0%
GCTAATTACTTACTTCTTGC+AGG + chr2_1:7808534-7808553 Msa0192070:intron 35.0%
CAAATACCTGACAGTATAGA+AGG - chr2_1:7808636-7808655 None:intergenic 35.0%
GCCATTAAGATTTCAGGAAT+TGG + chr2_1:7808668-7808687 Msa0192070:intron 35.0%
TTCAAAGTTAGAAGTCGTAG+TGG - chr2_1:7808875-7808894 None:intergenic 35.0%
!! TCCGAATTTTGGTAAAACTC+TGG - chr2_1:7808918-7808937 None:intergenic 35.0%
AACAGAAACAATGAGCCAAT+TGG + chr2_1:7808937-7808956 Msa0192070:intron 35.0%
! ACTTGTAGCATGCTTTTGTT+TGG + chr2_1:7809079-7809098 Msa0192070:intron 35.0%
!! GCTAAAATTGTTTTTCCCTG+TGG + chr2_1:7809279-7809298 Msa0192070:intron 35.0%
!! CTGGAATTACGACTACTTTT+TGG - chr2_1:7809319-7809338 None:intergenic 35.0%
ACTAAAGTTCTTACCTATGC+TGG - chr2_1:7809338-7809357 None:intergenic 35.0%
! TTATGAATCTTTTGACGAGG+TGG + chr2_1:7809616-7809635 Msa0192070:intron 35.0%
TTTGACGAGGTGGTTTAAAA+TGG + chr2_1:7809626-7809645 Msa0192070:intron 35.0%
! TCTTTTGGATTGAATCCTTC+TGG - chr2_1:7809738-7809757 None:intergenic 35.0%
GCTGAATTCATTTCCATTCA+GGG - chr2_1:7809887-7809906 None:intergenic 35.0%
AGCTGAATTCATTTCCATTC+AGG - chr2_1:7809888-7809907 None:intergenic 35.0%
!! TAATTTTCATGGCCTTGATG+TGG + chr2_1:7810030-7810049 Msa0192070:intron 35.0%
GCATTAATTACTCCACATCA+AGG - chr2_1:7810045-7810064 None:intergenic 35.0%
AGTTTGCAGATTGTGTTAGT+GGG + chr2_1:7810070-7810089 Msa0192070:intron 35.0%
!! TATATCCCATTTCTAGCTTG+CGG + chr2_1:7810117-7810136 Msa0192070:CDS 35.0%
CAAATAACACTACGAATCAG+TGG - chr2_1:7810334-7810353 None:intergenic 35.0%
!! CACTGATTCGTAGTGTTATT+TGG + chr2_1:7810332-7810351 Msa0192070:three_prime_UTR 35.0%
! ATTTGGGACAACAAAAGACT+CGG - chr2_1:7810443-7810462 None:intergenic 35.0%
! ACTTTTGCCTCCTAAGTTCA+TGG + chr2_1:7804890-7804909 Msa0192070:five_prime_UTR 40.0%
CAGACATTTACTCAAACACC+TGG - chr2_1:7805088-7805107 None:intergenic 40.0%
GTTTCTTAGGCAAGTAAGTG+AGG + chr2_1:7805166-7805185 Msa0192070:intron 40.0%
CAAAGCTTCAAGGGATAAGA+GGG + chr2_1:7805202-7805221 Msa0192070:CDS 40.0%
TACCGAAAAGCGAAAGAAGA+AGG + chr2_1:7805321-7805340 Msa0192070:CDS 40.0%
GAAAAGCGAAAGAAGAAGGT+TGG + chr2_1:7805325-7805344 Msa0192070:CDS 40.0%
! AAAGCGCCATAGTTTGTGTT+TGG - chr2_1:7805735-7805754 None:intergenic 40.0%
GAAACCGTAATGTCAATGAG+GGG + chr2_1:7805775-7805794 Msa0192070:intron 40.0%
CAATCCCCTCATTGACATTA+CGG - chr2_1:7805782-7805801 None:intergenic 40.0%
GATAAGTTTAAGAGGAAGGG+GGG - chr2_1:7805940-7805959 None:intergenic 40.0%
! AAATGAAAACTTTGGGGGCT+GGG - chr2_1:7806199-7806218 None:intergenic 40.0%
! TAAATGAAAACTTTGGGGGC+TGG - chr2_1:7806200-7806219 None:intergenic 40.0%
TGCCTCACTAATGCAAATGA+AGG + chr2_1:7806244-7806263 Msa0192070:intron 40.0%
CTCCTTCATTTGCATTAGTG+AGG - chr2_1:7806249-7806268 None:intergenic 40.0%
CTCACTAATGCAAATGAAGG+AGG + chr2_1:7806247-7806266 Msa0192070:intron 40.0%
!! CAAGTGGTTTCTAGTACAAC+TGG - chr2_1:7806291-7806310 None:intergenic 40.0%
GCCATGTATAAACAATAGGG+GGG + chr2_1:7806476-7806495 Msa0192070:intron 40.0%
TCCCCCCTATTGTTTATACA+TGG - chr2_1:7806480-7806499 None:intergenic 40.0%
GTTGCAGCTATCTTGATATC+CGG + chr2_1:7806530-7806549 Msa0192070:intron 40.0%
GATGTGAGATCTCAATGTCA+TGG - chr2_1:7806669-7806688 None:intergenic 40.0%
TCCCTGATATGTGTTATGTG+AGG + chr2_1:7806824-7806843 Msa0192070:intron 40.0%
CACCTCACATAACACATATC+AGG - chr2_1:7806829-7806848 None:intergenic 40.0%
! ACAGAGTGTTTGGAATGTGA+AGG - chr2_1:7806983-7807002 None:intergenic 40.0%
TTGCTGCATCATGATATGCA+GGG + chr2_1:7807048-7807067 Msa0192070:intron 40.0%
!! AGCTATTGATTTGCAGCCAA+TGG + chr2_1:7807093-7807112 Msa0192070:CDS 40.0%
ACCTGGATAACACCTTCAAT+CGG - chr2_1:7807121-7807140 None:intergenic 40.0%
CAAATCGTGTTTCGAAATGG+GGG - chr2_1:7807232-7807251 None:intergenic 40.0%
! AAACCTTTTTCCACTAGGTC+GGG - chr2_1:7807470-7807489 None:intergenic 40.0%
ATGTGGTTGAAATTCGACAG+AGG - chr2_1:7807507-7807526 None:intergenic 40.0%
! AAGGATCAATTTGGAGCAAC+AGG - chr2_1:7807725-7807744 None:intergenic 40.0%
GTTGCTCCAAATTGATCCTT+TGG + chr2_1:7807725-7807744 Msa0192070:intron 40.0%
!!! ATCCTTTGGTGATGTCGTTT+TGG + chr2_1:7807739-7807758 Msa0192070:intron 40.0%
AACCAAAACGACATCACCAA+AGG - chr2_1:7807744-7807763 None:intergenic 40.0%
!!! GTGATGTCGTTTTGGTTTGT+TGG + chr2_1:7807747-7807766 Msa0192070:intron 40.0%
!!! CGTTTTGGTTTGTTGGAACT+TGG + chr2_1:7807754-7807773 Msa0192070:intron 40.0%
!! TTGGTTTGTTGGAACTTGGA+AGG + chr2_1:7807758-7807777 Msa0192070:intron 40.0%
GGAACTTGGAAGGATCATAT+AGG + chr2_1:7807768-7807787 Msa0192070:intron 40.0%
TTACCCTCAACCTCTTTCAT+CGG + chr2_1:7808015-7808034 Msa0192070:intron 40.0%
TTCATCCATGTCATGAAGTC+CGG - chr2_1:7808166-7808185 None:intergenic 40.0%
GCTTACTGCAAGTATGAGTT+GGG - chr2_1:7808199-7808218 None:intergenic 40.0%
TGCTTACTGCAAGTATGAGT+TGG - chr2_1:7808200-7808219 None:intergenic 40.0%
AGATAAGGTAGTAGACTGAC+TGG - chr2_1:7808389-7808408 None:intergenic 40.0%
TTAAACTATACACCACGCAC+TGG - chr2_1:7808433-7808452 None:intergenic 40.0%
GTTACTCATGTACTGAAGGA+AGG + chr2_1:7808568-7808587 Msa0192070:CDS 40.0%
TCCTGAAATCTTAATGGCGA+GGG - chr2_1:7808666-7808685 None:intergenic 40.0%
TTCCTGAAATCTTAATGGCG+AGG - chr2_1:7808667-7808686 None:intergenic 40.0%
!! GTAGCATGCTTTTGTTTGGT+TGG + chr2_1:7809083-7809102 Msa0192070:intron 40.0%
AGTAGTCGTAATTCCAGCAT+AGG + chr2_1:7809322-7809341 Msa0192070:CDS 40.0%
! ACGAGGTGGTTTAAAATGGT+AGG + chr2_1:7809630-7809649 Msa0192070:intron 40.0%
! GGTGGTTTAAAATGGTAGGA+AGG + chr2_1:7809634-7809653 Msa0192070:intron 40.0%
! GGTTTAAAATGGTAGGAAGG+CGG + chr2_1:7809637-7809656 Msa0192070:intron 40.0%
! GTTTAAAATGGTAGGAAGGC+GGG + chr2_1:7809638-7809657 Msa0192070:intron 40.0%
TTGGATTGAATCCTTCTGGA+GGG - chr2_1:7809734-7809753 None:intergenic 40.0%
TTTGGATTGAATCCTTCTGG+AGG - chr2_1:7809735-7809754 None:intergenic 40.0%
! AGAAGCCGATGAAGATCTTT+TGG - chr2_1:7809753-7809772 None:intergenic 40.0%
TTCAAAGTTGCATCCCTGAA+TGG + chr2_1:7809871-7809890 Msa0192070:intron 40.0%
GAGTTTGCAGATTGTGTTAG+TGG + chr2_1:7810069-7810088 Msa0192070:intron 40.0%
!! ATATCCCATTTCTAGCTTGC+GGG + chr2_1:7810118-7810137 Msa0192070:CDS 40.0%
!! ACTCTAGAGCTCTCTTGTAA+GGG - chr2_1:7810242-7810261 None:intergenic 40.0%
!! AACTCTAGAGCTCTCTTGTA+AGG - chr2_1:7810243-7810262 None:intergenic 40.0%
!!! GGGAGAGATTTTCAAGTTCT+CGG - chr2_1:7810290-7810309 None:intergenic 40.0%
AGAACTTGAAAATCTCTCCC+TGG + chr2_1:7810290-7810309 Msa0192070:CDS 40.0%
TATGCAAGATCAGGAATCCA+GGG - chr2_1:7810310-7810329 None:intergenic 40.0%
ATATGCAAGATCAGGAATCC+AGG - chr2_1:7810311-7810330 None:intergenic 40.0%
ATCAGTGGATATGCAAGATC+AGG - chr2_1:7810319-7810338 None:intergenic 40.0%
AAAGACTCGGAAGAAAGGAA+AGG - chr2_1:7810430-7810449 None:intergenic 40.0%
CAACAAAAGACTCGGAAGAA+AGG - chr2_1:7810435-7810454 None:intergenic 40.0%
GAAGAAGCCATGAACTTAGG+AGG - chr2_1:7804900-7804919 None:intergenic 45.0%
AGAATCTCGTACAGTGTACG+AGG - chr2_1:7804928-7804947 None:intergenic 45.0%
CCTGGAGTGCATATCAACAT+AGG - chr2_1:7805070-7805089 None:intergenic 45.0%
CCTATGTTGATATGCACTCC+AGG + chr2_1:7805067-7805086 Msa0192070:intron 45.0%
AAACCATGGGCAAAGCTTCA+AGG + chr2_1:7805192-7805211 Msa0192070:exon 45.0%
AACCATGGGCAAAGCTTCAA+GGG + chr2_1:7805193-7805212 Msa0192070:exon 45.0%
GCAAAGCTTCAAGGGATAAG+AGG + chr2_1:7805201-7805220 Msa0192070:CDS 45.0%
CTTCAAGGGATAAGAGGGTA+TGG + chr2_1:7805207-7805226 Msa0192070:intron 45.0%
! GTAGATTTATGTGCTGCTCC+AGG + chr2_1:7805626-7805645 Msa0192070:CDS 45.0%
CGTAATGTCAATGAGGGGAT+TGG + chr2_1:7805780-7805799 Msa0192070:intron 45.0%
GGGGAACTAACATTCTGTAC+TGG - chr2_1:7806172-7806191 None:intergenic 45.0%
! AATGAAAACTTTGGGGGCTG+GGG - chr2_1:7806198-7806217 None:intergenic 45.0%
ATGGGTCGTATACTATGACC+AGG - chr2_1:7806344-7806363 None:intergenic 45.0%
CTGCATATCATGATGCAGCA+AGG - chr2_1:7807049-7807068 None:intergenic 45.0%
CTTGCTGCATCATGATATGC+AGG + chr2_1:7807047-7807066 Msa0192070:intron 45.0%
!! TCCGATTGAAGGTGTTATCC+AGG + chr2_1:7807117-7807136 Msa0192070:CDS 45.0%
TAGTTATATCACCCTGCACC+TGG - chr2_1:7807138-7807157 None:intergenic 45.0%
! AACCTTTTTCCACTAGGTCG+GGG - chr2_1:7807469-7807488 None:intergenic 45.0%
AGTTACCGGACTTCATGACA+TGG + chr2_1:7808158-7808177 Msa0192070:intron 45.0%
ACTCATGTACTGAAGGAAGG+AGG + chr2_1:7808571-7808590 Msa0192070:CDS 45.0%
CTCATGTACTGAAGGAAGGA+GGG + chr2_1:7808572-7808591 Msa0192070:CDS 45.0%
CACAAGCCTTCTATACTGTC+AGG + chr2_1:7808627-7808646 Msa0192070:CDS 45.0%
CCTGAAATCTTAATGGCGAG+GGG - chr2_1:7808665-7808684 None:intergenic 45.0%
GCTTTGCAAAAGTCACCACA+GGG - chr2_1:7809297-7809316 None:intergenic 45.0%
TTAGTTGTTCACCCTTGCAG+AGG + chr2_1:7809683-7809702 Msa0192070:intron 45.0%
AACTGCAAATGCCTCTGCAA+GGG - chr2_1:7809697-7809716 None:intergenic 45.0%
AAACTGCAAATGCCTCTGCA+AGG - chr2_1:7809698-7809717 None:intergenic 45.0%
GAAAATTACTCCCCTCCAGA+AGG + chr2_1:7809720-7809739 Msa0192070:CDS 45.0%
! TGGATTGAATCCTTCTGGAG+GGG - chr2_1:7809733-7809752 None:intergenic 45.0%
!! TCTTCATCGGCTTCTTGAGA+AGG + chr2_1:7809758-7809777 Msa0192070:CDS 45.0%
AGAAGGTTGGAAGTCCATCA+GGG + chr2_1:7809775-7809794 Msa0192070:CDS 45.0%
TTGCAGATTGTGTTAGTGGG+TGG + chr2_1:7810073-7810092 Msa0192070:intron 45.0%
! AGATTGTGTTAGTGGGTGGT+TGG + chr2_1:7810077-7810096 Msa0192070:intron 45.0%
!! TATCCCATTTCTAGCTTGCG+GGG + chr2_1:7810119-7810138 Msa0192070:CDS 45.0%
TATCCACTGCCTAAAGTTGC+TGG + chr2_1:7810171-7810190 Msa0192070:CDS 45.0%
ATCCACTGCCTAAAGTTGCT+GGG + chr2_1:7810172-7810191 Msa0192070:CDS 45.0%
TATGTTCCCCCAGCAACTTT+AGG - chr2_1:7810183-7810202 None:intergenic 45.0%
! TCTAGAGCTCTCTTGTAAGG+GGG - chr2_1:7810240-7810259 None:intergenic 45.0%
!! CTCTAGAGCTCTCTTGTAAG+GGG - chr2_1:7810241-7810260 None:intergenic 45.0%
ATCCCTTGAAGCTTTGCCCA+TGG - chr2_1:7805198-7805217 None:intergenic 50.0%
! ATGAAAACTTTGGGGGCTGG+GGG - chr2_1:7806197-7806216 None:intergenic 50.0%
CTTTGCATCAGGTGCAAGCT+TGG - chr2_1:7806610-7806629 None:intergenic 50.0%
ACACCTTCAATCGGAGCCAT+TGG - chr2_1:7807112-7807131 None:intergenic 50.0%
!! TGAAGGTGTTATCCAGGTGC+AGG + chr2_1:7807123-7807142 Msa0192070:CDS 50.0%
!! GAAGGTGTTATCCAGGTGCA+GGG + chr2_1:7807124-7807143 Msa0192070:CDS 50.0%
TAATGCTCGGACTGCTGAAG+TGG + chr2_1:7807156-7807175 Msa0192070:CDS 50.0%
ACCATCGCACACAACAAGGT+CGG - chr2_1:7807900-7807919 None:intergenic 50.0%
GGTCCGATGAAAGAGGTTGA+GGG - chr2_1:7808021-7808040 None:intergenic 50.0%
TGGTCCGATGAAAGAGGTTG+AGG - chr2_1:7808022-7808041 None:intergenic 50.0%
TCTCGTTGGTCCGATGAAAG+AGG - chr2_1:7808028-7808047 None:intergenic 50.0%
CCCCTCGCCATTAAGATTTC+AGG + chr2_1:7808662-7808681 Msa0192070:intron 50.0%
ACTCCTACAGGTGCACTTGT+TGG - chr2_1:7809028-7809047 None:intergenic 50.0%
GGCTTTGCAAAAGTCACCAC+AGG - chr2_1:7809298-7809317 None:intergenic 50.0%
! GCAAGTGTTTGGAGGCACAA+GGG - chr2_1:7809560-7809579 None:intergenic 50.0%
! TGCAAGTGTTTGGAGGCACA+AGG - chr2_1:7809561-7809580 None:intergenic 50.0%
!! CATCGGCTTCTTGAGAAGGT+TGG + chr2_1:7809762-7809781 Msa0192070:CDS 50.0%
GAGAAGGTTGGAAGTCCATC+AGG + chr2_1:7809774-7809793 Msa0192070:CDS 50.0%
GAAGGTTGGAAGTCCATCAG+GGG + chr2_1:7809776-7809795 Msa0192070:CDS 50.0%
CCTGTATCATCTACCCCTGA+TGG - chr2_1:7809792-7809811 None:intergenic 50.0%
CCATCAGGGGTAGATGATAC+AGG + chr2_1:7809789-7809808 Msa0192070:CDS 50.0%
! TGTGTTAGTGGGTGGTTGGA+AGG + chr2_1:7810081-7810100 Msa0192070:CDS 50.0%
GTGGTTGGAAGGCCCTAATA+AGG + chr2_1:7810092-7810111 Msa0192070:CDS 50.0%
TCCACTGCCTAAAGTTGCTG+GGG + chr2_1:7810173-7810192 Msa0192070:CDS 50.0%
TGGGGGAACATATCAGAGCT+TGG + chr2_1:7810191-7810210 Msa0192070:CDS 50.0%
TAGAGCTCTCTTGTAAGGGG+GGG - chr2_1:7810238-7810257 None:intergenic 50.0%
CTAGAGCTCTCTTGTAAGGG+GGG - chr2_1:7810239-7810258 None:intergenic 50.0%
CAGCCAATGGCTCCGATTGA+AGG + chr2_1:7807106-7807125 Msa0192070:CDS 55.0%
ATGTATCCACCCCGACCTAG+TGG + chr2_1:7807457-7807476 Msa0192070:intron 55.0%
! CTTTTTCCACTAGGTCGGGG+TGG - chr2_1:7807466-7807485 None:intergenic 55.0%
CACCCCGACCTAGTGGAAAA+AGG + chr2_1:7807464-7807483 Msa0192070:intron 55.0%
GAGCACCATCGCACACAACA+AGG - chr2_1:7807904-7807923 None:intergenic 55.0%
GCACCAACAAGTGCACCTGT+AGG + chr2_1:7809022-7809041 Msa0192070:intron 55.0%
GGTCCCCGCAAGCTAGAAAT+GGG - chr2_1:7810125-7810144 None:intergenic 55.0%
AGGTCCCCGCAAGCTAGAAA+TGG - chr2_1:7810126-7810145 None:intergenic 55.0%
CCACTGCCTAAAGTTGCTGG+GGG + chr2_1:7810174-7810193 Msa0192070:CDS 55.0%
GGGGCAATAGGAGGTTGTAC+TGG - chr2_1:7810219-7810238 None:intergenic 55.0%
TTGTAAGGGGGGGCAATAGG+AGG - chr2_1:7810228-7810247 None:intergenic 55.0%
CTCTTGTAAGGGGGGGCAAT+AGG - chr2_1:7810231-7810250 None:intergenic 55.0%
! TATGTGCTGCTCCAGGCAGC+TGG + chr2_1:7805633-7805652 Msa0192070:CDS 60.0%
AGTACCTGACTCCAGCTGCC+TGG - chr2_1:7805647-7805666 None:intergenic 60.0%
AGGCAGCTGGAGTCAGGTAC+TGG + chr2_1:7805646-7805665 Msa0192070:intron 60.0%
! AACTTTGGGGGCTGGGGGTA+GGG - chr2_1:7806192-7806211 None:intergenic 60.0%
! AAACTTTGGGGGCTGGGGGT+AGG - chr2_1:7806193-7806212 None:intergenic 60.0%
CAGGTGCAAGCTTGGCTGGA+AGG - chr2_1:7806602-7806621 None:intergenic 60.0%
GCATCAGGTGCAAGCTTGGC+TGG - chr2_1:7806606-7806625 None:intergenic 60.0%
! GCCGACCTTGTTGTGTGCGA+TGG + chr2_1:7807896-7807915 Msa0192070:CDS 60.0%
GTGTGCGATGGTGCTCCTGA+TGG + chr2_1:7807908-7807927 Msa0192070:CDS 60.0%
AATGCGCACACACCAGTGCG+TGG + chr2_1:7808418-7808437 Msa0192070:intron 60.0%
! CTAGCTTGCGGGGACCTTAC+TGG + chr2_1:7810129-7810148 Msa0192070:CDS 60.0%
CCCCCAGCAACTTTAGGCAG+TGG - chr2_1:7810177-7810196 None:intergenic 60.0%
TGCTCCAGGCAGCTGGAGTC+AGG + chr2_1:7805640-7805659 Msa0192070:CDS 65.0%
! ACTTTGGGGGCTGGGGGTAG+GGG - chr2_1:7806191-7806210 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 7804845 7810596 7804845 ID=Msa0192070;Name=Msa0192070
chr2_1 mRNA 7804845 7810596 7804845 ID=Msa0192070-mRNA-1;Parent=Msa0192070;Name=Msa0192070-mRNA-1;_AED=0.04;_eAED=0.04;_QI=229|1|1|1|0.90|0.83|12|276|316
chr2_1 exon 7804845 7805051 7804845 ID=Msa0192070-mRNA-1:exon:3603;Parent=Msa0192070-mRNA-1
chr2_1 exon 7805175 7805223 7805175 ID=Msa0192070-mRNA-1:exon:3604;Parent=Msa0192070-mRNA-1
chr2_1 exon 7805312 7805405 7805312 ID=Msa0192070-mRNA-1:exon:3605;Parent=Msa0192070-mRNA-1
chr2_1 exon 7805612 7805661 7805612 ID=Msa0192070-mRNA-1:exon:3606;Parent=Msa0192070-mRNA-1
chr2_1 exon 7806579 7806628 7806579 ID=Msa0192070-mRNA-1:exon:3607;Parent=Msa0192070-mRNA-1
chr2_1 exon 7807069 7807177 7807069 ID=Msa0192070-mRNA-1:exon:3608;Parent=Msa0192070-mRNA-1
chr2_1 exon 7807869 7807929 7807869 ID=Msa0192070-mRNA-1:exon:3609;Parent=Msa0192070-mRNA-1
chr2_1 exon 7808160 7808212 7808160 ID=Msa0192070-mRNA-1:exon:3610;Parent=Msa0192070-mRNA-1
chr2_1 exon 7808556 7808648 7808556 ID=Msa0192070-mRNA-1:exon:3611;Parent=Msa0192070-mRNA-1
chr2_1 exon 7809280 7809343 7809280 ID=Msa0192070-mRNA-1:exon:3612;Parent=Msa0192070-mRNA-1
chr2_1 exon 7809703 7809810 7809703 ID=Msa0192070-mRNA-1:exon:3613;Parent=Msa0192070-mRNA-1
chr2_1 exon 7810079 7810596 7810079 ID=Msa0192070-mRNA-1:exon:3614;Parent=Msa0192070-mRNA-1
chr2_1 five_prime_UTR 7804845 7805051 7804845 ID=Msa0192070-mRNA-1:five_prime_utr;Parent=Msa0192070-mRNA-1
chr2_1 five_prime_UTR 7805175 7805196 7805175 ID=Msa0192070-mRNA-1:five_prime_utr;Parent=Msa0192070-mRNA-1
chr2_1 CDS 7805197 7805223 7805197 ID=Msa0192070-mRNA-1:cds;Parent=Msa0192070-mRNA-1
chr2_1 CDS 7805312 7805405 7805312 ID=Msa0192070-mRNA-1:cds;Parent=Msa0192070-mRNA-1
chr2_1 CDS 7805612 7805661 7805612 ID=Msa0192070-mRNA-1:cds;Parent=Msa0192070-mRNA-1
chr2_1 CDS 7806579 7806628 7806579 ID=Msa0192070-mRNA-1:cds;Parent=Msa0192070-mRNA-1
chr2_1 CDS 7807069 7807177 7807069 ID=Msa0192070-mRNA-1:cds;Parent=Msa0192070-mRNA-1
chr2_1 CDS 7807869 7807929 7807869 ID=Msa0192070-mRNA-1:cds;Parent=Msa0192070-mRNA-1
chr2_1 CDS 7808160 7808212 7808160 ID=Msa0192070-mRNA-1:cds;Parent=Msa0192070-mRNA-1
chr2_1 CDS 7808556 7808648 7808556 ID=Msa0192070-mRNA-1:cds;Parent=Msa0192070-mRNA-1
chr2_1 CDS 7809280 7809343 7809280 ID=Msa0192070-mRNA-1:cds;Parent=Msa0192070-mRNA-1
chr2_1 CDS 7809703 7809810 7809703 ID=Msa0192070-mRNA-1:cds;Parent=Msa0192070-mRNA-1
chr2_1 CDS 7810079 7810320 7810079 ID=Msa0192070-mRNA-1:cds;Parent=Msa0192070-mRNA-1
chr2_1 three_prime_UTR 7810321 7810596 7810321 ID=Msa0192070-mRNA-1:three_prime_utr;Parent=Msa0192070-mRNA-1
Gene Sequence

>Msa0192070

ATGGGCAAAGCTTCAAGGGATAAGAGGGATATATATTACCGAAAAGCGAAAGAAGAAGGTTGGCGTGCTCGAAGTGCTTTTAAACTTCTTCAGATAGATGAAGAATTTAACATTTTTGAAGGGGTGAAACGTGTTGTAGATTTATGTGCTGCTCCAGGCAGCTGGAGTCAGGTTTTGAGTCGTAAACTGTACCTTCCAGCCAAGCTTGCACCTGATGCAAAGGATGAAAAGCTTCCTCTTATTGTAGCTATTGATTTGCAGCCAATGGCTCCGATTGAAGGTGTTATCCAGGTGCAGGGTGATATAACTAATGCTCGGACTGCTGAAGTGGTCATTAGACATTTTGATGGTTGCAAGGCCGACCTTGTTGTGTGCGATGGTGCTCCTGATGTTACCGGACTTCATGACATGGATGAATTTGTTCAATCCCAACTCATACTTGCAGGGTTAACAATTGTTACTCATGTACTGAAGGAAGGAGGGAAGTTCATTGCGAAAATATTTAGAGGAAAGGACACAAGCCTTCTATACTGTCAGCTAAAATTGTTTTTCCCTGTGGTGACTTTTGCAAAGCCAAAAAGTAGTCGTAATTCCAGCATAGAGGCATTTGCAGTTTGTGAAAATTACTCCCCTCCAGAAGGATTCAATCCAAAAGATCTTCATCGGCTTCTTGAGAAGGTTGGAAGTCCATCAGGGGTAGATGATACAGATTGTGTTAGTGGGTGGTTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGCGGGGACCTTACTGGATATGATTCTGATAGGTCATATCCACTGCCTAAAGTTGCTGGGGGAACATATCAGAGCTTGGATCCAGTACAACCTCCTATTGCCCCCCCTTACAAGAGAGCTCTAGAGTTAAAAAAAGCATCAACTCAAGGATTCCGAGAACTTGAAAATCTCTCCCTGGATTCCTGA

Protein sequence

>Msa0192070

MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLAPDAKDEKLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGVDDTDCVSGWLEGPNKVYIPFLACGDLTGYDSDRSYPLPKVAGGTYQSLDPVQPPIAPPYKRALELKKASTQGFRELENLSLDS*