Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114600 | sp|Q940B0|RL183_ARATH | 83.957 | 187 | 30 | 0 | 1 | 187 | 1 | 187 | 1.15e-112 | 321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114600 | G7I8R4 | 98.930 | 187 | 2 | 0 | 1 | 187 | 1 | 187 | 3.23e-129 | 370 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0114600 | 0.820317 | 7.311397e-53 | -8.615850e-47 |
| Msa0027590 | Msa0114600 | 0.814359 | 1.604195e-51 | -8.615850e-47 |
| Msa0032780 | Msa0114600 | 0.839331 | 1.689129e-57 | -8.615850e-47 |
| Msa0040220 | Msa0114600 | 0.814979 | 1.168846e-51 | -8.615850e-47 |
| Msa0071760 | Msa0114600 | 0.855778 | 5.019413e-62 | -8.615850e-47 |
| Msa0086160 | Msa0114600 | 0.867951 | 9.369578e-66 | -8.615850e-47 |
| Msa0087910 | Msa0114600 | 0.885665 | 6.683214e-72 | -8.615850e-47 |
| Msa0089540 | Msa0114600 | 0.871336 | 7.383724e-67 | -8.615850e-47 |
| Msa0100600 | Msa0114600 | 0.800311 | 1.529920e-48 | -8.615850e-47 |
| Msa0114600 | Msa0123290 | 0.818085 | 2.355721e-52 | -8.615850e-47 |
| Msa0114600 | Msa0128330 | 0.830845 | 2.334738e-55 | -8.615850e-47 |
| Msa0114600 | Msa0132460 | 0.851156 | 1.066110e-60 | -8.615850e-47 |
| Msa0114600 | Msa0134580 | 0.883014 | 6.418303e-71 | -8.615850e-47 |
| Msa0114600 | Msa0146610 | 0.830118 | 3.515569e-55 | -8.615850e-47 |
| Msa0114600 | Msa0167860 | 0.892879 | 1.055776e-74 | -8.615850e-47 |
| Msa0114600 | Msa0169710 | 0.811390 | 7.170891e-51 | -8.615850e-47 |
| Msa0114600 | Msa0174580 | 0.835195 | 1.932679e-56 | -8.615850e-47 |
| Msa0114600 | Msa0182050 | 0.847344 | 1.227431e-59 | -8.615850e-47 |
| Msa0114600 | Msa0182100 | 0.846977 | 1.546976e-59 | -8.615850e-47 |
| Msa0114600 | Msa0183840 | 0.840351 | 9.161428e-58 | -8.615850e-47 |
| Msa0114600 | Msa0184650 | 0.814605 | 1.414666e-51 | -8.615850e-47 |
| Msa0114600 | Msa0187810 | 0.850399 | 1.741188e-60 | -8.615850e-47 |
| Msa0114600 | Msa0190240 | 0.815750 | 7.876731e-52 | -8.615850e-47 |
| Msa0114600 | Msa0191550 | 0.827090 | 1.895072e-54 | -8.615850e-47 |
| Msa0114600 | Msa0192050 | 0.801764 | 7.719374e-49 | -8.615850e-47 |
| Msa0114600 | Msa0192070 | 0.807246 | 5.550121e-50 | -8.615850e-47 |
| Msa0114600 | Msa0192300 | 0.824638 | 7.241249e-54 | -8.615850e-47 |
| Msa0114600 | Msa0194940 | 0.866256 | 3.257230e-65 | -8.615850e-47 |
| Msa0114600 | Msa0210330 | 0.816518 | 5.307835e-52 | -8.615850e-47 |
| Msa0114600 | Msa0223950 | 0.842844 | 2.017742e-58 | -8.615850e-47 |
| Msa0114600 | Msa0235050 | 0.854137 | 1.503446e-61 | -8.615850e-47 |
| Msa0114600 | Msa0237180 | 0.816782 | 4.631218e-52 | -8.615850e-47 |
| Msa0114600 | Msa0265200 | 0.832651 | 8.369165e-56 | -8.615850e-47 |
| Msa0114600 | Msa0270160 | 0.833437 | 5.336604e-56 | -8.615850e-47 |
| Msa0114600 | Msa0277600 | 0.912880 | 1.172968e-83 | -8.615850e-47 |
| Msa0114600 | Msa0281330 | 0.897194 | 1.780222e-76 | -8.615850e-47 |
| Msa0114600 | Msa0281370 | 0.886719 | 2.676519e-72 | -8.615850e-47 |
| Msa0114600 | Msa0299540 | -0.813914 | 2.010915e-51 | -8.615850e-47 |
| Msa0114600 | Msa0301250 | 0.818277 | 2.132121e-52 | -8.615850e-47 |
| Msa0114600 | Msa0312210 | 0.831866 | 1.309049e-55 | -8.615850e-47 |
| Msa0114600 | Msa0313060 | 0.870911 | 1.020321e-66 | -8.615850e-47 |
| Msa0114600 | Msa0313520 | 0.805333 | 1.404063e-49 | -8.615850e-47 |
| Msa0114600 | Msa0315430 | 0.879855 | 8.857941e-70 | -8.615850e-47 |
| Msa0114600 | Msa0315660 | 0.812683 | 3.746619e-51 | -8.615850e-47 |
| Msa0114600 | Msa0340560 | 0.808917 | 2.446440e-50 | -8.615850e-47 |
| Msa0114600 | Msa0342850 | 0.819123 | 1.369976e-52 | -8.615850e-47 |
| Msa0114600 | Msa0342860 | -0.829009 | 6.539892e-55 | -8.615850e-47 |
| Msa0114600 | Msa0371490 | 0.826223 | 3.052764e-54 | -8.615850e-47 |
| Msa0114600 | Msa0377370 | 0.858479 | 8.011650e-63 | -8.615850e-47 |
| Msa0114600 | Msa0377520 | 0.814536 | 1.465495e-51 | -8.615850e-47 |
| Msa0114600 | Msa0382950 | 0.837795 | 4.210803e-57 | -8.615850e-47 |
| Msa0114600 | Msa0388250 | 0.844436 | 7.570966e-59 | -8.615850e-47 |
| Msa0114600 | Msa0416210 | 0.822012 | 2.973513e-53 | -8.615850e-47 |
| Msa0114600 | Msa0419710 | 0.910464 | 1.819669e-82 | -8.615850e-47 |
| Msa0114600 | Msa0426090 | 0.821719 | 3.477174e-53 | -8.615850e-47 |
| Msa0114600 | Msa0426250 | 0.867709 | 1.120383e-65 | -8.615850e-47 |
| Msa0114600 | Msa0432750 | 0.820891 | 5.396348e-53 | -8.615850e-47 |
| Msa0114600 | Msa0433060 | 0.884862 | 1.334433e-71 | -8.615850e-47 |
| Msa0114600 | Msa0450150 | 0.923593 | 2.165798e-89 | -8.615850e-47 |
| Msa0114600 | Msa0472480 | 0.808039 | 3.767607e-50 | -8.615850e-47 |
| Msa0114600 | Msa0473250 | 0.829663 | 4.537131e-55 | -8.615850e-47 |
| Msa0114600 | Msa0479980 | 0.826166 | 3.149033e-54 | -8.615850e-47 |
| Msa0114600 | Msa0481520 | 0.816042 | 6.778854e-52 | -8.615850e-47 |
| Msa0114600 | Msa0517480 | 0.831708 | 1.432540e-55 | -8.615850e-47 |
| Msa0114600 | Msa0521730 | 0.822458 | 2.343426e-53 | -8.615850e-47 |
| Msa0114600 | Msa0524680 | 0.882255 | 1.214704e-70 | -8.615850e-47 |
| Msa0114600 | Msa0529900 | 0.863029 | 3.331566e-64 | -8.615850e-47 |
| Msa0114600 | Msa0547920 | 0.896901 | 2.363419e-76 | -8.615850e-47 |
| Msa0114600 | Msa0550420 | 0.804138 | 2.494302e-49 | -8.615850e-47 |
| Msa0114600 | Msa0550490 | 0.886811 | 2.470145e-72 | -8.615850e-47 |
| Msa0114600 | Msa0568380 | 0.830748 | 2.466088e-55 | -8.615850e-47 |
| Msa0114600 | Msa0573550 | 0.900362 | 7.905480e-78 | -8.615850e-47 |
| Msa0114600 | Msa0575960 | -0.821054 | 4.951084e-53 | -8.615850e-47 |
| Msa0114600 | Msa0579830 | 0.810233 | 1.276499e-50 | -8.615850e-47 |
| Msa0114600 | Msa0580500 | 0.802881 | 4.545117e-49 | -8.615850e-47 |
| Msa0114600 | Msa0585570 | 0.892373 | 1.685154e-74 | -8.615850e-47 |
| Msa0114600 | Msa0588020 | -0.802685 | 4.990102e-49 | -8.615850e-47 |
| Msa0114600 | Msa0602900 | 0.885208 | 9.911225e-72 | -8.615850e-47 |
| Msa0114600 | Msa0605890 | 0.887498 | 1.353940e-72 | -8.615850e-47 |
| Msa0114600 | Msa0612040 | 0.802030 | 6.806298e-49 | -8.615850e-47 |
| Msa0114600 | Msa0616230 | 0.809151 | 2.179867e-50 | -8.615850e-47 |
| Msa0114600 | Msa0619230 | 0.809181 | 2.148271e-50 | -8.615850e-47 |
| Msa0114600 | Msa0622230 | 0.888314 | 6.590346e-73 | -8.615850e-47 |
| Msa0114600 | Msa0628230 | -0.811253 | 7.680125e-51 | -8.615850e-47 |
| Msa0114600 | Msa0643960 | 0.892736 | 1.205762e-74 | -8.615850e-47 |
| Msa0114600 | Msa0663400 | 0.894502 | 2.322821e-75 | -8.615850e-47 |
| Msa0114600 | Msa0686550 | 0.807440 | 5.048760e-50 | -8.615850e-47 |
| Msa0114600 | Msa0686660 | 0.831869 | 1.307176e-55 | -8.615850e-47 |
| Msa0114600 | Msa0694400 | 0.843041 | 1.787501e-58 | -8.615850e-47 |
| Msa0114600 | Msa0699560 | 0.813096 | 3.042369e-51 | -8.615850e-47 |
| Msa0114600 | Msa0704860 | 0.846654 | 1.896751e-59 | -8.615850e-47 |
| Msa0114600 | Msa0708630 | 0.851778 | 7.108860e-61 | -8.615850e-47 |
| Msa0114600 | Msa0715970 | 0.837866 | 4.035737e-57 | -8.615850e-47 |
| Msa0114600 | Msa0733410 | 0.823514 | 1.329312e-53 | -8.615850e-47 |
| Msa0114600 | Msa0741510 | 0.828988 | 6.617107e-55 | -8.615850e-47 |
| Msa0114600 | Msa0745970 | 0.811270 | 7.612770e-51 | -8.615850e-47 |
| Msa0114600 | Msa0748350 | 0.902616 | 8.077832e-79 | -8.615850e-47 |
| Msa0114600 | Msa0749000 | 0.867358 | 1.451857e-65 | -8.615850e-47 |
| Msa0114600 | Msa0790450 | 0.842675 | 2.237273e-58 | -8.615850e-47 |
| Msa0114600 | Msa0796490 | 0.883708 | 3.569237e-71 | -8.615850e-47 |
| Msa0114600 | Msa0902220 | 0.838782 | 2.343761e-57 | -8.615850e-47 |
| Msa0114600 | Msa0902730 | 0.800910 | 1.154590e-48 | -8.615850e-47 |
| Msa0114600 | Msa0925330 | 0.805045 | 1.613231e-49 | -8.615850e-47 |
| Msa0114600 | Msa0927910 | 0.836092 | 1.145978e-56 | -8.615850e-47 |
| Msa0114600 | Msa0929700 | 0.916031 | 2.903369e-85 | -8.615850e-47 |
| Msa0114600 | Msa0930100 | 0.816244 | 6.111251e-52 | -8.615850e-47 |
| Msa0114600 | Msa0930890 | 0.865322 | 6.420904e-65 | -8.615850e-47 |
| Msa0114600 | Msa0978470 | 0.807262 | 5.509347e-50 | -8.615850e-47 |
| Msa0114600 | Msa1004780 | 0.874709 | 5.462482e-68 | -8.615850e-47 |
| Msa0114600 | Msa1019110 | 0.810425 | 1.159963e-50 | -8.615850e-47 |
| Msa0114600 | Msa1025200 | 0.851640 | 7.779798e-61 | -8.615850e-47 |
| Msa0114600 | Msa1025220 | 0.835091 | 2.053540e-56 | -8.615850e-47 |
| Msa0114600 | Msa1040160 | 0.802193 | 6.299708e-49 | -8.615850e-47 |
| Msa0114600 | Msa1040170 | -0.830648 | 2.608440e-55 | -8.615850e-47 |
| Msa0114600 | Msa1041220 | 0.804595 | 2.003057e-49 | -8.615850e-47 |
| Msa0114600 | Msa1047020 | 0.845438 | 4.060671e-59 | -8.615850e-47 |
| Msa0114600 | Msa1050100 | 0.881717 | 1.903821e-70 | -8.615850e-47 |
| Msa0114600 | Msa1068660 | 0.802629 | 5.123212e-49 | -8.615850e-47 |
| Msa0114600 | Msa1070810 | 0.819090 | 1.393683e-52 | -8.615850e-47 |
| Msa0114600 | Msa1079910 | 0.830978 | 2.165163e-55 | -8.615850e-47 |
| Msa0114600 | Msa1079920 | 0.838661 | 2.518621e-57 | -8.615850e-47 |
| Msa0114600 | Msa1083360 | -0.842546 | 2.420056e-58 | -8.615850e-47 |
| Msa0114600 | Msa1083370 | 0.801889 | 7.277465e-49 | -8.615850e-47 |
| Msa0114600 | Msa1085570 | -0.831250 | 1.856396e-55 | -8.615850e-47 |
| Msa0114600 | Msa1085850 | 0.891954 | 2.477911e-74 | -8.615850e-47 |
| Msa0114600 | Msa1093500 | 0.801861 | 7.373455e-49 | -8.615850e-47 |
| Msa0114600 | Msa1109310 | 0.829974 | 3.812938e-55 | -8.615850e-47 |
| Msa0114600 | Msa1118790 | 0.812398 | 4.326572e-51 | -8.615850e-47 |
| Msa0114600 | Msa1124850 | 0.832582 | 8.708757e-56 | -8.615850e-47 |
| Msa0114600 | Msa1126690 | 0.848654 | 5.341936e-60 | -8.615850e-47 |
| Msa0114600 | Msa1128110 | -0.825056 | 5.770091e-54 | -8.615850e-47 |
| Msa0114600 | Msa1128120 | 0.814284 | 1.666011e-51 | -8.615850e-47 |
| Msa0114600 | Msa1130680 | 0.810382 | 1.184916e-50 | -8.615850e-47 |
| Msa0114600 | Msa1131030 | 0.821456 | 3.999933e-53 | -8.615850e-47 |
| Msa0114600 | Msa1144610 | 0.831972 | 1.232629e-55 | -8.615850e-47 |
| Msa0114600 | Msa1147670 | 0.813910 | 2.014775e-51 | -8.615850e-47 |
| Msa0114600 | Msa1158630 | 0.822841 | 1.908908e-53 | -8.615850e-47 |
| Msa0114600 | Msa1164150 | 0.805977 | 1.028699e-49 | -8.615850e-47 |
| Msa0114600 | Msa1165580 | 0.828161 | 1.048516e-54 | -8.615850e-47 |
| Msa0114600 | Msa1165640 | 0.883887 | 3.066445e-71 | -8.615850e-47 |
| Msa0114600 | Msa1165800 | 0.806112 | 9.636858e-50 | -8.615850e-47 |
| Msa0114600 | Msa1166670 | 0.850756 | 1.382529e-60 | -8.615850e-47 |
| Msa0114600 | Msa1186030 | 0.809248 | 2.078651e-50 | -8.615850e-47 |
| Msa0114600 | Msa1208330 | 0.834635 | 2.675054e-56 | -8.615850e-47 |
| Msa0114600 | Msa1219760 | 0.822527 | 2.258152e-53 | -8.615850e-47 |
| Msa0114600 | Msa1235950 | 0.821094 | 4.846374e-53 | -8.615850e-47 |
| Msa0114600 | Msa1235980 | 0.820364 | 7.133710e-53 | -8.615850e-47 |
| Msa0114600 | Msa1237040 | 0.804463 | 2.134770e-49 | -8.615850e-47 |
| Msa0114600 | Msa1255830 | 0.835507 | 1.611638e-56 | -8.615850e-47 |
| Msa0114600 | Msa1255850 | 0.843255 | 1.567690e-58 | -8.615850e-47 |
| Msa0114600 | Msa1269250 | -0.810142 | 1.335271e-50 | -8.615850e-47 |
| Msa0114600 | Msa1284060 | 0.819327 | 1.230986e-52 | -8.615850e-47 |
| Msa0114600 | Msa1296090 | 0.829474 | 5.043743e-55 | -8.615850e-47 |
| Msa0114600 | Msa1311400 | 0.807186 | 5.716218e-50 | -8.615850e-47 |
| Msa0114600 | Msa1330730 | 0.881447 | 2.381732e-70 | -8.615850e-47 |
| Msa0114600 | Msa1341780 | 0.879008 | 1.769144e-69 | -8.615850e-47 |
| Msa0114600 | Msa1351020 | 0.875038 | 4.221106e-68 | -8.615850e-47 |
| Msa0114600 | Msa1351910 | 0.845340 | 4.317122e-59 | -8.615850e-47 |
| Msa0114600 | Msa1351920 | -0.809976 | 1.450046e-50 | -8.615850e-47 |
| Msa0114600 | Msa1353300 | 0.845096 | 5.026483e-59 | -8.615850e-47 |
| Msa0114600 | Msa1362210 | 0.849960 | 2.312171e-60 | -8.615850e-47 |
| Msa0114600 | Msa1367540 | 0.880339 | 5.955173e-70 | -8.615850e-47 |
| Msa0114600 | Msa1371410 | 0.823166 | 1.603346e-53 | -8.615850e-47 |
| Msa0114600 | Msa1385480 | 0.858238 | 9.448990e-63 | -8.615850e-47 |
| Msa0114600 | Msa1390760 | 0.810738 | 9.930048e-51 | -8.615850e-47 |
| Msa0114600 | Msa1397660 | 0.817629 | 2.985864e-52 | -8.615850e-47 |
| Msa0114600 | Msa1415620 | 0.825138 | 5.518762e-54 | -8.615850e-47 |
| Msa0114600 | Msa1424570 | 0.841837 | 3.728479e-58 | -8.615850e-47 |
| Msa0114600 | Msa1425070 | 0.823579 | 1.283780e-53 | -8.615850e-47 |
| Msa0114600 | Msa1432310 | 0.816818 | 4.544661e-52 | -8.615850e-47 |
| Msa0114600 | Msa1434710 | -0.820195 | 7.798254e-53 | -8.615850e-47 |
| Msa0114600 | Msa1441220 | -0.807916 | 4.000009e-50 | -8.615850e-47 |
| Msa0114600 | Msa1446410 | 0.881368 | 2.544006e-70 | -8.615850e-47 |
| Msa0114600 | Msa1450560 | 0.841036 | 6.059916e-58 | -8.615850e-47 |
| Msa0114600 | Msa1463570 | 0.822524 | 2.262723e-53 | -8.615850e-47 |
| Msa0114600 | Msa1465700 | 0.805151 | 1.533310e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114600 | MtrunA17_Chr1g0192271 | 98.930 | 187 | 2 | 0 | 1 | 187 | 1 | 187 | 6.22e-133 | 370 |
| Msa0114600 | MtrunA17_Chr7g0269451 | 92.021 | 188 | 14 | 1 | 1 | 187 | 1 | 188 | 1.91e-122 | 343 |
| Msa0114600 | MtrunA17_Chr7g0272381 | 85.561 | 187 | 27 | 0 | 1 | 187 | 1 | 187 | 6.27e-117 | 329 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114600 | AT5G27850.1 | 83.957 | 187 | 30 | 0 | 1 | 187 | 1 | 187 | 1.16e-113 | 321 |
| Msa0114600 | AT3G05590.1 | 83.422 | 187 | 31 | 0 | 1 | 187 | 1 | 187 | 3.89e-113 | 320 |
| Msa0114600 | AT2G47570.1 | 76.344 | 186 | 43 | 1 | 3 | 187 | 1 | 186 | 1.56e-100 | 288 |
| Msa0114600 | AT3G05590.3 | 82.836 | 134 | 23 | 0 | 54 | 187 | 1 | 134 | 3.91e-79 | 232 |
| Msa0114600 | AT3G05590.2 | 82.836 | 134 | 23 | 0 | 54 | 187 | 1 | 134 | 3.91e-79 | 232 |
| Msa0114600 | AT5G27850.2 | 82.090 | 134 | 24 | 0 | 54 | 187 | 1 | 134 | 1.39e-77 | 228 |
Find 74 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCGATCAGTTGGCTCTT+AGG | 0.165548 | 1_3:+31784590 | Msa0114600:CDS |
| AAACACATCCACAGAAAATA+AGG | 0.228828 | 1_3:-31785548 | None:intergenic |
| TATTCTTGCCCTTGCCTTCT+CGG | 0.231639 | 1_3:-31784542 | None:intergenic |
| AGATAGATATCATTGGATTT+TGG | 0.235941 | 1_3:-31783443 | None:intergenic |
| ACTGCTTCACGAGCATTCTT+TGG | 0.271538 | 1_3:-31785284 | None:intergenic |
| TGATATCTATCTAAAGCTTT+TGG | 0.326212 | 1_3:+31783454 | Msa0114600:CDS |
| GAATGGGTAGTTGTCAATTA+AGG | 0.329081 | 1_3:+31785603 | Msa0114600:three_prime_UTR |
| GTTGGCTCTTAGGGCCCCTC+TGG | 0.332505 | 1_3:+31784600 | Msa0114600:CDS |
| ATGTGATAGTATTTCTTTGC+TGG | 0.334532 | 1_3:+31785427 | Msa0114600:exon |
| AGCTTTATCGGTTCCTTGTT+CGG | 0.346996 | 1_3:+31784221 | Msa0114600:intron |
| CGGTTCCTTGTTCGGAGAAC+TGG | 0.351555 | 1_3:+31784229 | Msa0114600:CDS |
| ATGACAAACCATGGCTGCTT+CGG | 0.357503 | 1_3:-31783283 | None:intergenic |
| TGGATGCAGGTCCTTCTTAG+AGG | 0.370140 | 1_3:+31785260 | Msa0114600:intron |
| ATTCGATCAGTTGGCTCTTA+GGG | 0.374062 | 1_3:+31784591 | Msa0114600:CDS |
| CACACCAAACCTTATGTTAG+AGG | 0.380593 | 1_3:+31785344 | Msa0114600:CDS |
| CTTGACTTTCCTCTAACATA+AGG | 0.385554 | 1_3:-31785353 | None:intergenic |
| CTGCTTCACGAGCATTCTTT+GGG | 0.387440 | 1_3:-31785283 | None:intergenic |
| TGACAAACCATGGCTGCTTC+GGG | 0.389142 | 1_3:-31783282 | None:intergenic |
| CCTGAGTGCTGTAACCTTGA+TGG | 0.411463 | 1_3:-31784515 | None:intergenic |
| AAGCTTTAGATAGATATCAT+TGG | 0.418565 | 1_3:-31783450 | None:intergenic |
| CTTTCCTCTAACATAAGGTT+TGG | 0.422789 | 1_3:-31785348 | None:intergenic |
| GGTAAAATTGCTGTCGTGGT+GGG | 0.429219 | 1_3:+31784454 | Msa0114600:CDS |
| TAAGGTTTGGTGTGGCTTTG+TGG | 0.445512 | 1_3:-31785335 | None:intergenic |
| AAGCACTTTGGTCGTGCTCC+TGG | 0.452826 | 1_3:+31785308 | Msa0114600:CDS |
| CATTCTTTGGGCCTCTAAGA+AGG | 0.473658 | 1_3:-31785271 | None:intergenic |
| CTTGTAGGGTATCGATCTTA+AGG | 0.473884 | 1_3:+31783385 | Msa0114600:intron |
| AAGGTTTGGTGTGGCTTTGT+GGG | 0.474825 | 1_3:-31785334 | None:intergenic |
| AAGGTTGTAGCTGGTAATAC+TGG | 0.487568 | 1_3:-31783233 | None:intergenic |
| ATCAACCTTGACAAAGATAG+TGG | 0.491899 | 1_3:-31784310 | None:intergenic |
| GTGTGGCTTTGTGGGACACC+AGG | 0.492305 | 1_3:-31785326 | None:intergenic |
| GTAAAATTGCTGTCGTGGTG+GGG | 0.493129 | 1_3:+31784455 | Msa0114600:CDS |
| CAAGAGGTTGTTTATGAGCA+AGG | 0.493391 | 1_3:+31784276 | Msa0114600:CDS |
| CTCTAACATAAGGTTTGGTG+TGG | 0.503784 | 1_3:-31785343 | None:intergenic |
| TGCTGCACCAAGGTTGTAGC+TGG | 0.508550 | 1_3:-31783242 | None:intergenic |
| ATGCTTAACATTCGATCAGT+TGG | 0.511340 | 1_3:+31784582 | Msa0114600:CDS |
| TAATGAAGTTCCAGCCATCA+AGG | 0.511887 | 1_3:+31784501 | Msa0114600:CDS |
| TTGAGAAGGCTAGAGGAAAG+AGG | 0.516701 | 1_3:+31785381 | Msa0114600:CDS |
| AACACATCCACAGAAAATAA+GGG | 0.518981 | 1_3:-31785547 | None:intergenic |
| CGTGAAGCAGTTAAGCACTT+TGG | 0.533436 | 1_3:+31785296 | Msa0114600:CDS |
| AGTATTACCAGCTACAACCT+TGG | 0.535808 | 1_3:+31783235 | Msa0114600:five_prime_UTR |
| TTGGCTCTTAGGGCCCCTCT+GGG | 0.540521 | 1_3:+31784601 | Msa0114600:CDS |
| AGGTAAAATTGCTGTCGTGG+TGG | 0.541180 | 1_3:+31784453 | Msa0114600:CDS |
| TAAAATTGCTGTCGTGGTGG+GGG | 0.545281 | 1_3:+31784456 | Msa0114600:CDS |
| TCAGGTTTACCGAGAAGGCA+AGG | 0.546899 | 1_3:+31784533 | Msa0114600:CDS |
| TCAATGCTGTTATACTCAAG+AGG | 0.549427 | 1_3:+31784260 | Msa0114600:CDS |
| TGCTGCCAGTTCTCCGAACA+AGG | 0.549972 | 1_3:-31784234 | None:intergenic |
| AGGCAAGGGCAAGAATAGAA+AGG | 0.551093 | 1_3:+31784548 | Msa0114600:CDS |
| AGTGCTGTAACCTTGATGGC+TGG | 0.551868 | 1_3:-31784511 | None:intergenic |
| TTGAAGACCCGAAGCAGCCA+TGG | 0.553568 | 1_3:+31783275 | Msa0114600:exon |
| GGCAAGGGCAAGAATAGAAA+GGG | 0.553936 | 1_3:+31784549 | Msa0114600:CDS |
| AGATTGACAAACCTTGCCAT+TGG | 0.555253 | 1_3:-31784341 | None:intergenic |
| AGCACTCAGGTTTACCGAGA+AGG | 0.559032 | 1_3:+31784528 | Msa0114600:CDS |
| CCATCAAGGTTACAGCACTC+AGG | 0.567655 | 1_3:+31784515 | Msa0114600:CDS |
| TGGTTTCAAAACGAAGGTGG+CGG | 0.569398 | 1_3:-31785733 | None:intergenic |
| AACCTCCACTATCTTTGTCA+AGG | 0.576324 | 1_3:+31784305 | Msa0114600:CDS |
| TAGGGTATCGATCTTAAGGC+AGG | 0.583750 | 1_3:+31783389 | Msa0114600:intron |
| GGCCCCTCTGGGACAAAACA+CGG | 0.583895 | 1_3:+31784612 | Msa0114600:CDS |
| CCACAGAAAATAAGGGAGCA+AGG | 0.584160 | 1_3:-31785540 | None:intergenic |
| TCTGTTTGGTTTCAAAACGA+AGG | 0.596375 | 1_3:-31785739 | None:intergenic |
| GTTTGGTTTCAAAACGAAGG+TGG | 0.603989 | 1_3:-31785736 | None:intergenic |
| AGGAAGATTGAGAAGGCTAG+AGG | 0.612753 | 1_3:+31785374 | Msa0114600:CDS |
| AGGGCAAGAATAGAAAGGGC+TGG | 0.616183 | 1_3:+31784553 | Msa0114600:CDS |
| CAGGTTTACCGAGAAGGCAA+GGG | 0.616460 | 1_3:+31784534 | Msa0114600:CDS |
| GATCAAGTATACCAATGGCA+AGG | 0.626076 | 1_3:+31784330 | Msa0114600:CDS |
| AAAGTCAAGGAAGATTGAGA+AGG | 0.626317 | 1_3:+31785367 | Msa0114600:CDS |
| CACGCTCGACTGCTGCACCA+AGG | 0.635785 | 1_3:-31783252 | None:intergenic |
| TGGCTGGAACTTCATTAACA+CGG | 0.640444 | 1_3:-31784495 | None:intergenic |
| AGGTTGATCAAGTATACCAA+TGG | 0.643281 | 1_3:+31784325 | Msa0114600:CDS |
| AACCTTGACAAAGATAGTGG+AGG | 0.643571 | 1_3:-31784307 | None:intergenic |
| GGAAGGTAAAATTGCTGTCG+TGG | 0.652028 | 1_3:+31784450 | Msa0114600:intron |
| AGAGGAAAGAGGAAGAGCAG+AGG | 0.670040 | 1_3:+31785392 | Msa0114600:CDS |
| GGTATCGATCTTAAGGCAGG+AGG | 0.692243 | 1_3:+31783392 | Msa0114600:CDS |
| CTTATGTTAGAGGAAAGTCA+AGG | 0.705037 | 1_3:+31785354 | Msa0114600:CDS |
| GCAAGAATAGAAAGGGCTGG+TGG | 0.708893 | 1_3:+31784556 | Msa0114600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTCAAAATATTATTAT+GGG | + | chr1_3:31783818-31783837 | Msa0114600:intron | 10.0% |
| !! | ACAATAATAATAATGATTTA+GGG | - | chr1_3:31783900-31783919 | None:intergenic | 10.0% |
| !! | AACAATAATAATAATGATTT+AGG | - | chr1_3:31783901-31783920 | None:intergenic | 10.0% |
| !!! | TATTATTGTTTTAAAAAACA+AGG | + | chr1_3:31783911-31783930 | Msa0114600:intron | 10.0% |
| !!! | GATTTTAATAATATAATACT+TGG | + | chr1_3:31785240-31785259 | Msa0114600:intron | 10.0% |
| !! | ATAATAAGATTGTTTAATAG+AGG | - | chr1_3:31783309-31783328 | None:intergenic | 15.0% |
| !! | AATGAAATATAACCAAAAAT+AGG | - | chr1_3:31783768-31783787 | None:intergenic | 15.0% |
| !!! | CTGTTTTCAAAATATTATTA+TGG | + | chr1_3:31783817-31783836 | Msa0114600:intron | 15.0% |
| !!! | TTAATAGAAGTGATTTTTAT+GGG | + | chr1_3:31783977-31783996 | Msa0114600:intron | 15.0% |
| !!! | TTAATTTTAAGCAAAGATTT+AGG | - | chr1_3:31784969-31784988 | None:intergenic | 15.0% |
| !!! | AATCTTTTCTTAAAATTAAC+TGG | + | chr1_3:31784844-31784863 | Msa0114600:intron | 15.0% |
| !!! | ATCTTTTCTTAAAATTAACT+GGG | + | chr1_3:31784845-31784864 | Msa0114600:intron | 15.0% |
| !! | CATAGTCAAAAAAAATCATT+GGG | - | chr1_3:31783604-31783623 | None:intergenic | 20.0% |
| !!! | AAGTTTAATTTATAATGCTG+AGG | + | chr1_3:31783649-31783668 | Msa0114600:intron | 20.0% |
| !!! | AGTTTAATTTATAATGCTGA+GGG | + | chr1_3:31783650-31783669 | Msa0114600:intron | 20.0% |
| !!! | TTTTTGGTTATATTTCATTG+CGG | + | chr1_3:31783769-31783788 | Msa0114600:intron | 20.0% |
| !!! | TATTGTTTTAAAAAACAAGG+AGG | + | chr1_3:31783914-31783933 | Msa0114600:intron | 20.0% |
| !!! | GTTAATAGAAGTGATTTTTA+TGG | + | chr1_3:31783976-31783995 | Msa0114600:intron | 20.0% |
| !!! | GTTTTAGCTTTATAAAGAAA+TGG | - | chr1_3:31784081-31784100 | None:intergenic | 20.0% |
| !! | TCTTTATAAAGCTAAAACAA+AGG | + | chr1_3:31784083-31784102 | Msa0114600:intron | 20.0% |
| !! | TAGATATATGAGAAAAATGA+GGG | - | chr1_3:31784111-31784130 | None:intergenic | 20.0% |
| !! | TCAGTTTACTATAGTTATAA+TGG | + | chr1_3:31784401-31784420 | Msa0114600:intron | 20.0% |
| !! | TACATAGGTAAATTTCAAAA+TGG | - | chr1_3:31784430-31784449 | None:intergenic | 20.0% |
| !!! | ATTTTGAAATTTACCTATGT+AGG | + | chr1_3:31784429-31784448 | Msa0114600:intron | 20.0% |
| !!! | TTTGATAATGATTTTCAGTA+TGG | + | chr1_3:31785507-31785526 | Msa0114600:three_prime_UTR | 20.0% |
| !!! | CTAGATTTTCTAAATTACAT+TGG | + | chr1_3:31785672-31785691 | Msa0114600:three_prime_UTR | 20.0% |
| ! | AATTCAAACGTAAGAAACAA+TGG | - | chr1_3:31783362-31783381 | None:intergenic | 25.0% |
| !! | AGATAGATATCATTGGATTT+TGG | - | chr1_3:31783446-31783465 | None:intergenic | 25.0% |
| !!! | AAGCTTTAGATAGATATCAT+TGG | - | chr1_3:31783453-31783472 | None:intergenic | 25.0% |
| !!! | TGATATCTATCTAAAGCTTT+TGG | + | chr1_3:31783454-31783473 | Msa0114600:CDS | 25.0% |
| ! | AGAAATAACATAAAGCTACA+GGG | - | chr1_3:31783537-31783556 | None:intergenic | 25.0% |
| ! | AAGAAATAACATAAAGCTAC+AGG | - | chr1_3:31783538-31783557 | None:intergenic | 25.0% |
| ! | GCATAGTCAAAAAAAATCAT+TGG | - | chr1_3:31783605-31783624 | None:intergenic | 25.0% |
| ! | TGTTGAAATGTAAGCAAAAA+TGG | + | chr1_3:31783732-31783751 | Msa0114600:intron | 25.0% |
| ! | GTTGAAATGTAAGCAAAAAT+GGG | + | chr1_3:31783733-31783752 | Msa0114600:intron | 25.0% |
| ! | GTAGATATATGAGAAAAATG+AGG | - | chr1_3:31784112-31784131 | None:intergenic | 25.0% |
| !!! | TTTTACATGATCAGCTTTAT+CGG | + | chr1_3:31784209-31784228 | Msa0114600:intron | 25.0% |
| ! | CAAAAAGACGTTAAATAATC+AGG | - | chr1_3:31784733-31784752 | None:intergenic | 25.0% |
| !!! | TGATTGAACTTTTTAGAGTA+TGG | + | chr1_3:31784751-31784770 | Msa0114600:intron | 25.0% |
| ! | TTCTTAAAATTAACTGTCTG+AGG | + | chr1_3:31784850-31784869 | Msa0114600:intron | 25.0% |
| !!! | TAGTTTTGTGTTCTTTATTG+TGG | + | chr1_3:31784883-31784902 | Msa0114600:intron | 25.0% |
| ! | TATAACTTTGATCTTGAACA+AGG | - | chr1_3:31784929-31784948 | None:intergenic | 25.0% |
| !! | TTTTCTTAAAATTAACTGGG+AGG | + | chr1_3:31785090-31785109 | Msa0114600:intron | 25.0% |
| ! | TATAGTTGTGTTCTTTATTG+TGG | + | chr1_3:31785121-31785140 | Msa0114600:intron | 25.0% |
| ! | AAGGTTTGATAGAATGAAAA+AGG | + | chr1_3:31785198-31785217 | Msa0114600:intron | 25.0% |
| ! | ATAATATAATACTTGGATGC+AGG | + | chr1_3:31785247-31785266 | Msa0114600:intron | 25.0% |
| ACTGGTAGAGAAAAAAACTA+GGG | - | chr1_3:31783218-31783237 | None:intergenic | 30.0% | |
| TACTGGTAGAGAAAAAAACT+AGG | - | chr1_3:31783219-31783238 | None:intergenic | 30.0% | |
| TACGTTTGAATTGAACTTGT+AGG | + | chr1_3:31783370-31783389 | Msa0114600:intron | 30.0% | |
| ACGTTTGAATTGAACTTGTA+GGG | + | chr1_3:31783371-31783390 | Msa0114600:intron | 30.0% | |
| ! | GATCTGTCATTGACAATTTT+AGG | + | chr1_3:31783558-31783577 | Msa0114600:intron | 30.0% |
| TATTATGGGTGTGTTTGTTT+AGG | + | chr1_3:31783832-31783851 | Msa0114600:intron | 30.0% | |
| TGAAATTTACCTATGTAGGA+AGG | + | chr1_3:31784433-31784452 | Msa0114600:intron | 30.0% | |
| ! | TTTTCTCTACTCTCTAACAA+AGG | + | chr1_3:31785022-31785041 | Msa0114600:intron | 30.0% |
| TGTGTAACTATTGTGATGTA+AGG | + | chr1_3:31785179-31785198 | Msa0114600:intron | 30.0% | |
| ATGTGATAGTATTTCTTTGC+TGG | + | chr1_3:31785427-31785446 | Msa0114600:exon | 30.0% | |
| AACACATCCACAGAAAATAA+GGG | - | chr1_3:31785550-31785569 | None:intergenic | 30.0% | |
| AAACACATCCACAGAAAATA+AGG | - | chr1_3:31785551-31785570 | None:intergenic | 30.0% | |
| !! | ACAGTTTTGATGTTAGAGAA+TGG | + | chr1_3:31785586-31785605 | Msa0114600:three_prime_UTR | 30.0% |
| !! | CAGTTTTGATGTTAGAGAAT+GGG | + | chr1_3:31785587-31785606 | Msa0114600:three_prime_UTR | 30.0% |
| TAATAGAGGATGACAAACCA+TGG | - | chr1_3:31783295-31783314 | None:intergenic | 35.0% | |
| !! | CTATCTAAAGCTTTTGGTCA+AGG | + | chr1_3:31783460-31783479 | Msa0114600:CDS | 35.0% |
| ! | GGGTCGAAAAAACCTATTTT+TGG | + | chr1_3:31783753-31783772 | Msa0114600:intron | 35.0% |
| TGGTTATATTTCATTGCGGA+TGG | + | chr1_3:31783773-31783792 | Msa0114600:intron | 35.0% | |
| ! | GGGAAAGCTAACTCATTTTA+GGG | - | chr1_3:31783880-31783899 | None:intergenic | 35.0% |
| ! | AGGGAAAGCTAACTCATTTT+AGG | - | chr1_3:31783881-31783900 | None:intergenic | 35.0% |
| TCAATGCTGTTATACTCAAG+AGG | + | chr1_3:31784260-31784279 | Msa0114600:CDS | 35.0% | |
| ATCAACCTTGACAAAGATAG+TGG | - | chr1_3:31784313-31784332 | None:intergenic | 35.0% | |
| ! | AGGTTGATCAAGTATACCAA+TGG | + | chr1_3:31784325-31784344 | Msa0114600:CDS | 35.0% |
| ! | GCAATTTTACCTTCCTACAT+AGG | - | chr1_3:31784445-31784464 | None:intergenic | 35.0% |
| ATGCTTAACATTCGATCAGT+TGG | + | chr1_3:31784582-31784601 | Msa0114600:CDS | 35.0% | |
| CACTATAGTGATTCCTTTGT+TGG | - | chr1_3:31784796-31784815 | None:intergenic | 35.0% | |
| ! | GTGCTATTGCTGTCATTTAA+TGG | + | chr1_3:31784813-31784832 | Msa0114600:intron | 35.0% |
| !! | GCTGTCATTTAATGGATTGA+TGG | + | chr1_3:31784821-31784840 | Msa0114600:intron | 35.0% |
| ATTGTGGTCGAATATGTTTC+AGG | + | chr1_3:31784899-31784918 | Msa0114600:intron | 35.0% | |
| ! | GCTGTCATTTATTGGATTGA+TGG | + | chr1_3:31785063-31785082 | Msa0114600:intron | 35.0% |
| CTTTCCTCTAACATAAGGTT+TGG | - | chr1_3:31785351-31785370 | None:intergenic | 35.0% | |
| CTTGACTTTCCTCTAACATA+AGG | - | chr1_3:31785356-31785375 | None:intergenic | 35.0% | |
| CTTATGTTAGAGGAAAGTCA+AGG | + | chr1_3:31785354-31785373 | Msa0114600:CDS | 35.0% | |
| AAAGTCAAGGAAGATTGAGA+AGG | + | chr1_3:31785367-31785386 | Msa0114600:CDS | 35.0% | |
| GAATGGGTAGTTGTCAATTA+AGG | + | chr1_3:31785603-31785622 | Msa0114600:three_prime_UTR | 35.0% | |
| AAGGTTGTAGCTGGTAATAC+TGG | - | chr1_3:31783236-31783255 | None:intergenic | 40.0% | |
| AGTATTACCAGCTACAACCT+TGG | + | chr1_3:31783235-31783254 | Msa0114600:five_prime_UTR | 40.0% | |
| !! | CTTGTAGGGTATCGATCTTA+AGG | + | chr1_3:31783385-31783404 | Msa0114600:intron | 40.0% |
| !! | AGCTTTATCGGTTCCTTGTT+CGG | + | chr1_3:31784221-31784240 | Msa0114600:intron | 40.0% |
| CAAGAGGTTGTTTATGAGCA+AGG | + | chr1_3:31784276-31784295 | Msa0114600:CDS | 40.0% | |
| AACCTCCACTATCTTTGTCA+AGG | + | chr1_3:31784305-31784324 | Msa0114600:CDS | 40.0% | |
| ! | AACCTTGACAAAGATAGTGG+AGG | - | chr1_3:31784310-31784329 | None:intergenic | 40.0% |
| GATCAAGTATACCAATGGCA+AGG | + | chr1_3:31784330-31784349 | Msa0114600:CDS | 40.0% | |
| AGATTGACAAACCTTGCCAT+TGG | - | chr1_3:31784344-31784363 | None:intergenic | 40.0% | |
| TGGCTGGAACTTCATTAACA+CGG | - | chr1_3:31784498-31784517 | None:intergenic | 40.0% | |
| TAATGAAGTTCCAGCCATCA+AGG | + | chr1_3:31784501-31784520 | Msa0114600:CDS | 40.0% | |
| ! | ATTCGATCAGTTGGCTCTTA+GGG | + | chr1_3:31784591-31784610 | Msa0114600:CDS | 40.0% |
| TTCTCTCTAGTCTCCAACAA+AGG | + | chr1_3:31784780-31784799 | Msa0114600:intron | 40.0% | |
| ! | GTGCTGTTGCTGTCATTTAT+TGG | + | chr1_3:31785055-31785074 | Msa0114600:intron | 40.0% |
| ! | TTCACATTTTCCCTCTGTAG+CGG | + | chr1_3:31785154-31785173 | Msa0114600:intron | 40.0% |
| GAATGAAAAAGGTTACGCTG+AGG | + | chr1_3:31785209-31785228 | Msa0114600:intron | 40.0% | |
| !! | CTCTAACATAAGGTTTGGTG+TGG | - | chr1_3:31785346-31785365 | None:intergenic | 40.0% |
| CACACCAAACCTTATGTTAG+AGG | + | chr1_3:31785344-31785363 | Msa0114600:CDS | 40.0% | |
| !!! | GGATGTGTTTTGTGCTACTT+TGG | + | chr1_3:31785561-31785580 | Msa0114600:three_prime_UTR | 40.0% |
| ATGACAAACCATGGCTGCTT+CGG | - | chr1_3:31783286-31783305 | None:intergenic | 45.0% | |
| !! | TAGGGTATCGATCTTAAGGC+AGG | + | chr1_3:31783389-31783408 | Msa0114600:intron | 45.0% |
| GGAAGGTAAAATTGCTGTCG+TGG | + | chr1_3:31784450-31784469 | Msa0114600:intron | 45.0% | |
| AGGTAAAATTGCTGTCGTGG+TGG | + | chr1_3:31784453-31784472 | Msa0114600:CDS | 45.0% | |
| GGTAAAATTGCTGTCGTGGT+GGG | + | chr1_3:31784454-31784473 | Msa0114600:CDS | 45.0% | |
| GTAAAATTGCTGTCGTGGTG+GGG | + | chr1_3:31784455-31784474 | Msa0114600:CDS | 45.0% | |
| TAAAATTGCTGTCGTGGTGG+GGG | + | chr1_3:31784456-31784475 | Msa0114600:CDS | 45.0% | |
| TATTCTTGCCCTTGCCTTCT+CGG | - | chr1_3:31784545-31784564 | None:intergenic | 45.0% | |
| AGGCAAGGGCAAGAATAGAA+AGG | + | chr1_3:31784548-31784567 | Msa0114600:CDS | 45.0% | |
| GGCAAGGGCAAGAATAGAAA+GGG | + | chr1_3:31784549-31784568 | Msa0114600:CDS | 45.0% | |
| ! | CATTCGATCAGTTGGCTCTT+AGG | + | chr1_3:31784590-31784609 | Msa0114600:CDS | 45.0% |
| ! | ATACCGTGTTTTGTCCCAGA+GGG | - | chr1_3:31784618-31784637 | None:intergenic | 45.0% |
| GTTACACAAACCGCTACAGA+GGG | - | chr1_3:31785167-31785186 | None:intergenic | 45.0% | |
| AGTTACACAAACCGCTACAG+AGG | - | chr1_3:31785168-31785187 | None:intergenic | 45.0% | |
| AGGTTACGCTGAGGTTATAG+AGG | + | chr1_3:31785218-31785237 | Msa0114600:intron | 45.0% | |
| ! | CATTCTTTGGGCCTCTAAGA+AGG | - | chr1_3:31785274-31785293 | None:intergenic | 45.0% |
| CTGCTTCACGAGCATTCTTT+GGG | - | chr1_3:31785286-31785305 | None:intergenic | 45.0% | |
| ACTGCTTCACGAGCATTCTT+TGG | - | chr1_3:31785287-31785306 | None:intergenic | 45.0% | |
| CGTGAAGCAGTTAAGCACTT+TGG | + | chr1_3:31785296-31785315 | Msa0114600:CDS | 45.0% | |
| !! | AAGGTTTGGTGTGGCTTTGT+GGG | - | chr1_3:31785337-31785356 | None:intergenic | 45.0% |
| !! | TAAGGTTTGGTGTGGCTTTG+TGG | - | chr1_3:31785338-31785357 | None:intergenic | 45.0% |
| AGGAAGATTGAGAAGGCTAG+AGG | + | chr1_3:31785374-31785393 | Msa0114600:CDS | 45.0% | |
| TTGAGAAGGCTAGAGGAAAG+AGG | + | chr1_3:31785381-31785400 | Msa0114600:CDS | 45.0% | |
| CCACAGAAAATAAGGGAGCA+AGG | - | chr1_3:31785543-31785562 | None:intergenic | 45.0% | |
| !!! | CCTTGCTCCCTTATTTTCTG+TGG | + | chr1_3:31785540-31785559 | Msa0114600:three_prime_UTR | 45.0% |
| TGACAAACCATGGCTGCTTC+GGG | - | chr1_3:31783285-31783304 | None:intergenic | 50.0% | |
| !! | GGTATCGATCTTAAGGCAGG+AGG | + | chr1_3:31783392-31783411 | Msa0114600:CDS | 50.0% |
| ! | AGTGCTGTAACCTTGATGGC+TGG | - | chr1_3:31784514-31784533 | None:intergenic | 50.0% |
| ! | CCTGAGTGCTGTAACCTTGA+TGG | - | chr1_3:31784518-31784537 | None:intergenic | 50.0% |
| CCATCAAGGTTACAGCACTC+AGG | + | chr1_3:31784515-31784534 | Msa0114600:CDS | 50.0% | |
| AGCACTCAGGTTTACCGAGA+AGG | + | chr1_3:31784528-31784547 | Msa0114600:CDS | 50.0% | |
| TCAGGTTTACCGAGAAGGCA+AGG | + | chr1_3:31784533-31784552 | Msa0114600:CDS | 50.0% | |
| CAGGTTTACCGAGAAGGCAA+GGG | + | chr1_3:31784534-31784553 | Msa0114600:CDS | 50.0% | |
| AGGGCAAGAATAGAAAGGGC+TGG | + | chr1_3:31784553-31784572 | Msa0114600:CDS | 50.0% | |
| GCAAGAATAGAAAGGGCTGG+TGG | + | chr1_3:31784556-31784575 | Msa0114600:CDS | 50.0% | |
| ! | TACCGTGTTTTGTCCCAGAG+GGG | - | chr1_3:31784617-31784636 | None:intergenic | 50.0% |
| ! | CATACCGTGTTTTGTCCCAG+AGG | - | chr1_3:31784619-31784638 | None:intergenic | 50.0% |
| TGGATGCAGGTCCTTCTTAG+AGG | + | chr1_3:31785260-31785279 | Msa0114600:intron | 50.0% | |
| AGAGGAAAGAGGAAGAGCAG+AGG | + | chr1_3:31785392-31785411 | Msa0114600:CDS | 50.0% | |
| TGCTGCACCAAGGTTGTAGC+TGG | - | chr1_3:31783245-31783264 | None:intergenic | 55.0% | |
| TTGAAGACCCGAAGCAGCCA+TGG | + | chr1_3:31783275-31783294 | Msa0114600:exon | 55.0% | |
| CGGTTCCTTGTTCGGAGAAC+TGG | + | chr1_3:31784229-31784248 | Msa0114600:CDS | 55.0% | |
| TGCTGCCAGTTCTCCGAACA+AGG | - | chr1_3:31784237-31784256 | None:intergenic | 55.0% | |
| AAGCACTTTGGTCGTGCTCC+TGG | + | chr1_3:31785308-31785327 | Msa0114600:CDS | 55.0% | |
| ! | TTGGCTCTTAGGGCCCCTCT+GGG | + | chr1_3:31784601-31784620 | Msa0114600:CDS | 60.0% |
| !! | GGCCCCTCTGGGACAAAACA+CGG | + | chr1_3:31784612-31784631 | Msa0114600:CDS | 60.0% |
| !! | GTGTGGCTTTGTGGGACACC+AGG | - | chr1_3:31785329-31785348 | None:intergenic | 60.0% |
| CACGCTCGACTGCTGCACCA+AGG | - | chr1_3:31783255-31783274 | None:intergenic | 65.0% | |
| ! | GTTGGCTCTTAGGGCCCCTC+TGG | + | chr1_3:31784600-31784619 | Msa0114600:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 31783194 | 31785749 | 31783194 | ID=Msa0114600;Name=Msa0114600 |
| chr1_3 | mRNA | 31783194 | 31785749 | 31783194 | ID=Msa0114600-mRNA-1;Parent=Msa0114600;Name=Msa0114600-mRNA-1;_AED=0.07;_eAED=0.07;_QI=100|1|1|1|1|1|5|322|187 |
| chr1_3 | exon | 31783194 | 31783296 | 31783194 | ID=Msa0114600-mRNA-1:exon:10324;Parent=Msa0114600-mRNA-1 |
| chr1_3 | exon | 31783392 | 31783481 | 31783392 | ID=Msa0114600-mRNA-1:exon:10325;Parent=Msa0114600-mRNA-1 |
| chr1_3 | exon | 31784223 | 31784351 | 31784223 | ID=Msa0114600-mRNA-1:exon:10326;Parent=Msa0114600-mRNA-1 |
| chr1_3 | exon | 31784451 | 31784633 | 31784451 | ID=Msa0114600-mRNA-1:exon:10327;Parent=Msa0114600-mRNA-1 |
| chr1_3 | exon | 31785269 | 31785749 | 31785269 | ID=Msa0114600-mRNA-1:exon:10328;Parent=Msa0114600-mRNA-1 |
| chr1_3 | five_prime_UTR | 31783194 | 31783293 | 31783194 | ID=Msa0114600-mRNA-1:five_prime_utr;Parent=Msa0114600-mRNA-1 |
| chr1_3 | CDS | 31783294 | 31783296 | 31783294 | ID=Msa0114600-mRNA-1:cds;Parent=Msa0114600-mRNA-1 |
| chr1_3 | CDS | 31783392 | 31783481 | 31783392 | ID=Msa0114600-mRNA-1:cds;Parent=Msa0114600-mRNA-1 |
| chr1_3 | CDS | 31784223 | 31784351 | 31784223 | ID=Msa0114600-mRNA-1:cds;Parent=Msa0114600-mRNA-1 |
| chr1_3 | CDS | 31784451 | 31784633 | 31784451 | ID=Msa0114600-mRNA-1:cds;Parent=Msa0114600-mRNA-1 |
| chr1_3 | CDS | 31785269 | 31785427 | 31785269 | ID=Msa0114600-mRNA-1:cds;Parent=Msa0114600-mRNA-1 |
| chr1_3 | three_prime_UTR | 31785428 | 31785749 | 31785428 | ID=Msa0114600-mRNA-1:three_prime_utr;Parent=Msa0114600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
