Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192160 | XP_003593601.1 | 100.000 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 5.82e-179 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192160 | sp|Q9M3V8|RS6_ASPOF | 91.532 | 248 | 21 | 0 | 1 | 248 | 1 | 248 | 6.99e-166 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192160 | Q2HTS1 | 100.000 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 2.78e-179 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0091880 | Msa0192160 | 0.814461 | 1.522612e-51 | -8.615850e-47 |
| Msa0192160 | Msa0192230 | 0.929630 | 5.271365e-93 | -8.615850e-47 |
| Msa0192160 | Msa0313100 | 0.867239 | 1.584068e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192160 | MtrunA17_Chr2g0282411 | 100.000 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 0.0 | 501 |
| Msa0192160 | MtrunA17_Chr4g0047021 | 96.774 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 1.60e-176 | 485 |
| Msa0192160 | MtrunA17_Chr7g0234621 | 95.968 | 248 | 10 | 0 | 1 | 248 | 1 | 248 | 4.54e-175 | 481 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192160 | AT5G10360.1 | 92.562 | 242 | 18 | 0 | 1 | 242 | 1 | 242 | 1.70e-163 | 452 |
| Msa0192160 | AT4G31700.1 | 92.149 | 242 | 19 | 0 | 1 | 242 | 1 | 242 | 4.25e-155 | 431 |
| Msa0192160 | AT5G10360.2 | 73.967 | 242 | 11 | 1 | 1 | 242 | 1 | 190 | 1.23e-118 | 337 |
| Msa0192160 | AT4G31700.2 | 91.667 | 180 | 15 | 0 | 63 | 242 | 1 | 180 | 1.19e-106 | 306 |
Find 92 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCAAAGATGATAGAAATT+AGG | 0.150491 | 2_1:-7885957 | None:intergenic |
| ATTGAAGAGCTTACGGATTT+TGG | 0.153100 | 2_1:-7888261 | None:intergenic |
| TAAATTGTAGTCGTGCATTT+TGG | 0.161193 | 2_1:+7886276 | Msa0192160:intron |
| TTGCTACTCGCAGGAATTTA+AGG | 0.172205 | 2_1:+7886420 | Msa0192160:intron |
| CTCAAAGATGATAGAAATTA+GGG | 0.226973 | 2_1:-7885956 | None:intergenic |
| CTCTTAGGACCCCTCATTCT+TGG | 0.233777 | 2_1:-7888233 | None:intergenic |
| CTCACCGGTGCAGTTCTTTC+CGG | 0.238048 | 2_1:+7889770 | Msa0192160:three_prime_UTR |
| GAGGATCTCACAAGAGGTTT+TGG | 0.240752 | 2_1:+7886304 | Msa0192160:CDS |
| CATCGATTTCAAGCTTCTTC+TGG | 0.245851 | 2_1:-7886154 | None:intergenic |
| GTGACCAGGCGCTGTATCTT+TGG | 0.280234 | 2_1:-7889381 | None:intergenic |
| TGACCAGGCGCTGTATCTTT+GGG | 0.285753 | 2_1:-7889380 | None:intergenic |
| TTCATTGTGAAATGTGGATT+TGG | 0.296731 | 2_1:-7886019 | None:intergenic |
| GTTAACACACCCTGCTTCAT+TGG | 0.338665 | 2_1:-7886487 | None:intergenic |
| GGAACGCCGCAGTGAGAGTT+TGG | 0.366197 | 2_1:+7889524 | Msa0192160:CDS |
| TGGTCTCTTGACATATAGTT+GGG | 0.391584 | 2_1:+7889876 | Msa0192160:three_prime_UTR |
| TGCTACTCGCAGGAATTTAA+GGG | 0.399045 | 2_1:+7886421 | Msa0192160:intron |
| AGACCTCTCTGTTCTGAACT+TGG | 0.408965 | 2_1:+7888157 | Msa0192160:CDS |
| ACTTCTTGCCTCTAGATTGA+AGG | 0.416460 | 2_1:+7889494 | Msa0192160:CDS |
| TTGTAGCCTTGTCTGTCACT+TGG | 0.431299 | 2_1:+7889949 | Msa0192160:three_prime_UTR |
| TTGGTCTCTTGACATATAGT+TGG | 0.432634 | 2_1:+7889875 | Msa0192160:three_prime_UTR |
| TGGAAAGATTGAAGAGCTTA+CGG | 0.437945 | 2_1:-7888268 | None:intergenic |
| CTCTTTCTTTGAAGAGTCAA+AGG | 0.440470 | 2_1:-7889405 | None:intergenic |
| AAGTTCAGAACAGAGAGGTC+TGG | 0.450666 | 2_1:-7888155 | None:intergenic |
| AAATCCACATTTCACAATGA+AGG | 0.452458 | 2_1:+7886021 | Msa0192160:exon |
| CGCTGCAACACCTTGCTTAG+CGG | 0.459636 | 2_1:-7889571 | None:intergenic |
| GGCGCAATGGAGAGCGAAGA+AGG | 0.461619 | 2_1:+7888105 | Msa0192160:CDS |
| CTTTGACTCTTCAAAGAAAG+AGG | 0.462251 | 2_1:+7889406 | Msa0192160:CDS |
| CTTCCTGACATCATCATCCT+TGG | 0.467618 | 2_1:-7888288 | None:intergenic |
| AGCAAGAGGCGAACACGACC+AGG | 0.471596 | 2_1:-7886511 | None:intergenic |
| ACAAGGATTTCCAATGAAGC+AGG | 0.480359 | 2_1:+7886477 | Msa0192160:CDS |
| GAACTTGGTTATTGTGAAGA+AGG | 0.484415 | 2_1:+7888172 | Msa0192160:CDS |
| GACAAGGCTACAAACACAAC+AGG | 0.494733 | 2_1:-7889939 | None:intergenic |
| AAGGGTGAAAATGATTTGCC+TGG | 0.498405 | 2_1:+7888191 | Msa0192160:CDS |
| AGTTCAGAACAGAGAGGTCT+GGG | 0.504245 | 2_1:-7888154 | None:intergenic |
| TGTAGCCTTGTCTGTCACTT+GGG | 0.516737 | 2_1:+7889950 | Msa0192160:three_prime_UTR |
| TTTCCAAGGATGATGATGTC+AGG | 0.517231 | 2_1:+7888285 | Msa0192160:CDS |
| GACCAGGCGCTGTATCTTTG+GGG | 0.517909 | 2_1:-7889379 | None:intergenic |
| TTCTTCTGGCAACCAGTGGT+TGG | 0.519589 | 2_1:-7886140 | None:intergenic |
| CATTGCGCCTTCCGTGTCCT+CGG | 0.523620 | 2_1:-7888091 | None:intergenic |
| CAGCAAGTACACGCAAGGTC+CGG | 0.528584 | 2_1:-7889789 | None:intergenic |
| AACGTTGCAAATCCAACCAC+TGG | 0.533153 | 2_1:+7886128 | Msa0192160:CDS |
| CTTCCGTGTCCTCGGAAACA+AGG | 0.533549 | 2_1:-7888083 | None:intergenic |
| GAGCTTCTTCGTTCGCGATA+CGG | 0.533638 | 2_1:-7885992 | None:intergenic |
| GTTTGGCTAAGAAGAGATCA+AGG | 0.534691 | 2_1:+7889541 | Msa0192160:CDS |
| ATGTTGAAAAGCCAAGAATG+AGG | 0.544680 | 2_1:+7888222 | Msa0192160:CDS |
| TACTCGTCTGATGAATCGAT+TGG | 0.544878 | 2_1:+7889856 | Msa0192160:three_prime_UTR |
| GTAACCTTCATTGTGAAATG+TGG | 0.547012 | 2_1:-7886025 | None:intergenic |
| AGCCCCAAAGATACAGCGCC+TGG | 0.547274 | 2_1:+7889377 | Msa0192160:CDS |
| AAGCTTCTTCTGGCAACCAG+TGG | 0.547317 | 2_1:-7886144 | None:intergenic |
| CGGACTTTCACAACCAAAGC+AGG | 0.557230 | 2_1:+7888329 | Msa0192160:CDS |
| CGAAGAAGGAAGTCTGTTCG+TGG | 0.557458 | 2_1:+7888119 | Msa0192160:CDS |
| CGAGGACACGGAAGGCGCAA+TGG | 0.561877 | 2_1:+7888092 | Msa0192160:CDS |
| CTCTAGATTGAAGGAGCAGA+GGG | 0.562368 | 2_1:+7889503 | Msa0192160:CDS |
| GGATACGTCTTCAAAATCAC+TGG | 0.563795 | 2_1:+7886442 | Msa0192160:CDS |
| GCTTCTTGATCTCTTCTCAC+CGG | 0.564576 | 2_1:+7889755 | Msa0192160:three_prime_UTR |
| AAGCAGGGTGTGTTAACCCC+TGG | 0.565983 | 2_1:+7886493 | Msa0192160:CDS |
| TGTTGAAAAGCCAAGAATGA+GGG | 0.570225 | 2_1:+7888223 | Msa0192160:CDS |
| ACTCCTTGTTTCCGAGGACA+CGG | 0.574407 | 2_1:+7888080 | Msa0192160:CDS |
| TTTGACTCTTCAAAGAAAGA+GGG | 0.574504 | 2_1:+7889407 | Msa0192160:CDS |
| AGAAGCTACTCAATCCATCA+AGG | 0.579693 | 2_1:-7889738 | None:intergenic |
| TAAGCTCTTCAATCTTTCCA+AGG | 0.582836 | 2_1:+7888271 | Msa0192160:CDS |
| GCGGTTATTTACACATGTTG+TGG | 0.587667 | 2_1:+7889915 | Msa0192160:three_prime_UTR |
| AGGTCCGGAAAGAACTGCAC+CGG | 0.591209 | 2_1:-7889774 | None:intergenic |
| AACTTGGTTATTGTGAAGAA+GGG | 0.597761 | 2_1:+7888173 | Msa0192160:CDS |
| GCAGGTACTCCTTGTTTCCG+AGG | 0.602952 | 2_1:+7888074 | Msa0192160:intron |
| GAAGAGTCAAAGGAGTGACC+AGG | 0.604666 | 2_1:-7889395 | None:intergenic |
| TTATACCTCTGTGGAGCAAG+AGG | 0.605499 | 2_1:-7886525 | None:intergenic |
| TACGTCTTCAAAATCACTGG+TGG | 0.606695 | 2_1:+7886445 | Msa0192160:CDS |
| CTTTGGTTGTGAAAGTCCGA+CGG | 0.609736 | 2_1:-7888325 | None:intergenic |
| CTTGTTTCCGAGGACACGGA+AGG | 0.610269 | 2_1:+7888084 | Msa0192160:CDS |
| AGGCTCTCCACCGCTAAGCA+AGG | 0.611423 | 2_1:+7889561 | Msa0192160:CDS |
| GGACAAGAGGATCTCACAAG+AGG | 0.614846 | 2_1:+7886298 | Msa0192160:CDS |
| GCAAGAGGCGAACACGACCA+GGG | 0.615545 | 2_1:-7886510 | None:intergenic |
| GGTTGTGAAAGTCCGACGGT+AGG | 0.616762 | 2_1:-7888321 | None:intergenic |
| TGCAACACCTTGCTTAGCGG+TGG | 0.616816 | 2_1:-7889568 | None:intergenic |
| GGGGTATCTATTGACTGTTG+CGG | 0.620040 | 2_1:+7889896 | Msa0192160:three_prime_UTR |
| CCTCTAGATTGAAGGAGCAG+AGG | 0.621309 | 2_1:+7889502 | Msa0192160:CDS |
| CCTCTGCTCCTTCAATCTAG+AGG | 0.626623 | 2_1:-7889502 | None:intergenic |
| GTTGAAAAGCCAAGAATGAG+GGG | 0.636999 | 2_1:+7888224 | Msa0192160:CDS |
| CAAGGATTTCCAATGAAGCA+GGG | 0.641279 | 2_1:+7886478 | Msa0192160:CDS |
| GAAGAAGGAAGTCTGTTCGT+GGG | 0.645378 | 2_1:+7888120 | Msa0192160:CDS |
| GGTCTCTTGACATATAGTTG+GGG | 0.645550 | 2_1:+7889877 | Msa0192160:three_prime_UTR |
| GAACACAGCAAGTACACGCA+AGG | 0.662556 | 2_1:-7889794 | None:intergenic |
| GTAGAAAGGTTATACCTCTG+TGG | 0.668019 | 2_1:-7886534 | None:intergenic |
| AATTGCCAAAGCAAAATCAG+AGG | 0.670645 | 2_1:+7889455 | Msa0192160:CDS |
| CAAGAGGCGAACACGACCAG+GGG | 0.676279 | 2_1:-7886509 | None:intergenic |
| ACTGGTGGATGTGACAAACA+AGG | 0.694989 | 2_1:+7886460 | Msa0192160:CDS |
| AGTATGTCAACACCTACCGT+CGG | 0.698935 | 2_1:+7888309 | Msa0192160:CDS |
| GGCAACCCAAGTGACAGACA+AGG | 0.707717 | 2_1:-7889955 | None:intergenic |
| GTTCGCCTCTTGCTCCACAG+AGG | 0.710024 | 2_1:+7886520 | Msa0192160:CDS |
| TCTTAGCCAAACTCTCACTG+CGG | 0.768400 | 2_1:-7889530 | None:intergenic |
| TAACCAAGTTCAGAACAGAG+AGG | 0.775773 | 2_1:-7888160 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAAAATAAAAATT+AGG | - | chr2_1:7886258-7886277 | None:intergenic | 0.0% |
| !! | ATATATATATATATAAAAAT+TGG | - | chr2_1:7887816-7887835 | None:intergenic | 0.0% |
| !! | TCAATATAACAATTAATTTA+AGG | - | chr2_1:7886380-7886399 | None:intergenic | 10.0% |
| !!! | TTTTATTAATTATTATAGTG+AGG | + | chr2_1:7886582-7886601 | Msa0192160:intron | 10.0% |
| !! | ATAATTAATATACAAAACAA+AGG | - | chr2_1:7888745-7888764 | None:intergenic | 10.0% |
| !!! | AAAAAAAGATCTAAAATAGA+GGG | - | chr2_1:7886883-7886902 | None:intergenic | 15.0% |
| !!! | TAAAAGTTTTGCTTAAAAAT+TGG | + | chr2_1:7887425-7887444 | Msa0192160:intron | 15.0% |
| !! | CATAATTAACAAAACTAAAA+AGG | - | chr2_1:7887703-7887722 | None:intergenic | 15.0% |
| !! | GATTTATTAATTATGTTGTT+CGG | + | chr2_1:7887746-7887765 | Msa0192160:intron | 15.0% |
| !! | ATTTATTAATTATGTTGTTC+GGG | + | chr2_1:7887747-7887766 | Msa0192160:intron | 15.0% |
| !! | TTGTAATAGAATATTATCTA+TGG | + | chr2_1:7889271-7889290 | Msa0192160:intron | 15.0% |
| !! | TATGGATCTATAATTTATAA+TGG | + | chr2_1:7889301-7889320 | Msa0192160:intron | 15.0% |
| !! | ACTGCAAAATAATTTCTATA+TGG | - | chr2_1:7886106-7886125 | None:intergenic | 20.0% |
| !! | AAGGCAATAAAAATTGAAAA+AGG | - | chr2_1:7886205-7886224 | None:intergenic | 20.0% |
| !! | AAACAAAAAAAACTGTAGAA+AGG | - | chr2_1:7886551-7886570 | None:intergenic | 20.0% |
| !! | TGTACTATTATTTGCATTAT+AGG | + | chr2_1:7886761-7886780 | Msa0192160:intron | 20.0% |
| !! | CAAACAGTAATAAAAACAAA+AGG | - | chr2_1:7886821-7886840 | None:intergenic | 20.0% |
| !!! | GAAAAAAAGATCTAAAATAG+AGG | - | chr2_1:7886884-7886903 | None:intergenic | 20.0% |
| !!! | AATTTATTTTGTATGTGTTG+AGG | + | chr2_1:7886928-7886947 | Msa0192160:intron | 20.0% |
| !! | TCTTAAAATAGTATGATACA+AGG | + | chr2_1:7887389-7887408 | Msa0192160:intron | 20.0% |
| !!! | TATGTTTTTTATAATACCAG+CGG | + | chr2_1:7887881-7887900 | Msa0192160:intron | 20.0% |
| !! | ACCAAATAAATACTTAACAA+GGG | - | chr2_1:7888029-7888048 | None:intergenic | 20.0% |
| !! | TACCAAATAAATACTTAACA+AGG | - | chr2_1:7888030-7888049 | None:intergenic | 20.0% |
| !! | ACAAGTGATAAATACTAAAT+AGG | - | chr2_1:7888424-7888443 | None:intergenic | 20.0% |
| !! | AAAAATTCCAACTTAGATAT+TGG | - | chr2_1:7888459-7888478 | None:intergenic | 20.0% |
| !!! | ATCACTTGCTATTATAATAT+AGG | + | chr2_1:7888483-7888502 | Msa0192160:intron | 20.0% |
| !!! | TCACTTGCTATTATAATATA+GGG | + | chr2_1:7888484-7888503 | Msa0192160:intron | 20.0% |
| !!! | ATATTAATTATGCTTTGTTG+TGG | + | chr2_1:7888754-7888773 | Msa0192160:intron | 20.0% |
| !! | GATTTAAAAATAGAATCAGA+GGG | - | chr2_1:7889039-7889058 | None:intergenic | 20.0% |
| !! | AGATTTAAAAATAGAATCAG+AGG | - | chr2_1:7889040-7889059 | None:intergenic | 20.0% |
| !! | AAATAATACTACAAAAACTC+AGG | - | chr2_1:7889630-7889649 | None:intergenic | 20.0% |
| !!! | TTTTAATACTTTGTGTTTGA+TGG | + | chr2_1:7889695-7889714 | Msa0192160:three_prime_UTR | 20.0% |
| ! | CTCAAAGATGATAGAAATTA+GGG | - | chr2_1:7885959-7885978 | None:intergenic | 25.0% |
| ! | ACTCAAAGATGATAGAAATT+AGG | - | chr2_1:7885960-7885979 | None:intergenic | 25.0% |
| ! | CATAATAGCAATGAAATCAA+AGG | - | chr2_1:7886077-7886096 | None:intergenic | 25.0% |
| ! | CTCTTTATCATTTACTTGAA+TGG | + | chr2_1:7886793-7886812 | Msa0192160:intron | 25.0% |
| ! | CAAAATAAATTCACCAGTTT+GGG | - | chr2_1:7886919-7886938 | None:intergenic | 25.0% |
| ! | ACAAAATAAATTCACCAGTT+TGG | - | chr2_1:7886920-7886939 | None:intergenic | 25.0% |
| !!! | CTATTTTAAGAGAGATAGAA+GGG | - | chr2_1:7887380-7887399 | None:intergenic | 25.0% |
| !!! | ACTATTTTAAGAGAGATAGA+AGG | - | chr2_1:7887381-7887400 | None:intergenic | 25.0% |
| !! | AATAACAGAAACGTATTTTC+TGG | - | chr2_1:7887463-7887482 | None:intergenic | 25.0% |
| !!! | TATGTTAGTGGATTTTTTGT+AGG | + | chr2_1:7887639-7887658 | Msa0192160:intron | 25.0% |
| ! | AATTTAATGTTTGTTTGAGC+AGG | + | chr2_1:7888056-7888075 | Msa0192160:intron | 25.0% |
| !!! | ATAGCTTTGGTTTTGAAAAA+TGG | + | chr2_1:7888385-7888404 | Msa0192160:intron | 25.0% |
| !!! | TCAATTTTTCAAGGATTGAT+GGG | - | chr2_1:7888662-7888681 | None:intergenic | 25.0% |
| !!! | TTCAATTTTTCAAGGATTGA+TGG | - | chr2_1:7888663-7888682 | None:intergenic | 25.0% |
| !! | TAGCTTCTTTCAATTTTTCA+AGG | - | chr2_1:7888671-7888690 | None:intergenic | 25.0% |
| !!! | ACAAAGGTTTTAAGTTTAGT+GGG | - | chr2_1:7888729-7888748 | None:intergenic | 25.0% |
| !!! | AACAAAGGTTTTAAGTTTAG+TGG | - | chr2_1:7888730-7888749 | None:intergenic | 25.0% |
| !!! | GAATATTTAGTTGTTTTGAG+AGG | + | chr2_1:7888889-7888908 | Msa0192160:intron | 25.0% |
| !! | TGTCAATTTGCAATTGTTTT+GGG | - | chr2_1:7889063-7889082 | None:intergenic | 25.0% |
| !! | TTGTCAATTTGCAATTGTTT+TGG | - | chr2_1:7889064-7889083 | None:intergenic | 25.0% |
| ! | AATAATTGTCATAAGTTAGC+TGG | - | chr2_1:7889148-7889167 | None:intergenic | 25.0% |
| ! | ACTTATGACAATTATTACAG+CGG | + | chr2_1:7889152-7889171 | Msa0192160:intron | 25.0% |
| !! | AAAATATCCGCTCTTTTATT+TGG | + | chr2_1:7889183-7889202 | Msa0192160:intron | 25.0% |
| !!! | AAATATCCGCTCTTTTATTT+GGG | + | chr2_1:7889184-7889203 | Msa0192160:intron | 25.0% |
| ! | ATTATCTATGGTCATAACTA+TGG | + | chr2_1:7889283-7889302 | Msa0192160:intron | 25.0% |
| !!! | AGAATTTACTTTTACCTTGA+TGG | + | chr2_1:7889724-7889743 | Msa0192160:three_prime_UTR | 25.0% |
| ! | TACATTGAGAATCTCAAAAA+TGG | - | chr2_1:7889979-7889998 | None:intergenic | 25.0% |
| TTCATTGTGAAATGTGGATT+TGG | - | chr2_1:7886022-7886041 | None:intergenic | 30.0% | |
| AAATCCACATTTCACAATGA+AGG | + | chr2_1:7886021-7886040 | Msa0192160:exon | 30.0% | |
| CAATGAAATCAAAGGAACAA+GGG | - | chr2_1:7886069-7886088 | None:intergenic | 30.0% | |
| AAATCGTGTGAATTGAAGAA+AGG | - | chr2_1:7886224-7886243 | None:intergenic | 30.0% | |
| ! | TAAATTGTAGTCGTGCATTT+TGG | + | chr2_1:7886276-7886295 | Msa0192160:intron | 30.0% |
| ! | AAATTGTAGTCGTGCATTTT+GGG | + | chr2_1:7886277-7886296 | Msa0192160:intron | 30.0% |
| TACTATAAACCCATTTGTGT+TGG | + | chr2_1:7886631-7886650 | Msa0192160:intron | 30.0% | |
| TGTTTGAATTATTCGTTTCC+TGG | + | chr2_1:7886835-7886854 | Msa0192160:intron | 30.0% | |
| ! | TCTAAAATAGAGGGTTAAAC+CGG | - | chr2_1:7886874-7886893 | None:intergenic | 30.0% |
| !! | TGTTCCATACACTTTGATTT+TGG | - | chr2_1:7887015-7887034 | None:intergenic | 30.0% |
| !!! | TCGTTGTTGTTTTCTACTTT+TGG | - | chr2_1:7887049-7887068 | None:intergenic | 30.0% |
| GAAAACAACAACGAAAGAAA+AGG | + | chr2_1:7887055-7887074 | Msa0192160:intron | 30.0% | |
| CGTTACAAAGAGATATCAAT+GGG | + | chr2_1:7887173-7887192 | Msa0192160:intron | 30.0% | |
| TTTGTATAGAGTTTGTCTCT+TGG | - | chr2_1:7887318-7887337 | None:intergenic | 30.0% | |
| GTGAGAGTTAACTTAAAATC+AGG | - | chr2_1:7887617-7887636 | None:intergenic | 30.0% | |
| TATTAATTATGTTGTTCGGG+TGG | + | chr2_1:7887750-7887769 | Msa0192160:intron | 30.0% | |
| ATTTGGGGGAAAAACATAAA+TGG | - | chr2_1:7887783-7887802 | None:intergenic | 30.0% | |
| GAACCATCTAATATTAGAGA+CGG | - | chr2_1:7887988-7888007 | None:intergenic | 30.0% | |
| GCCCTTGTTAAGTATTTATT+TGG | + | chr2_1:7888025-7888044 | Msa0192160:intron | 30.0% | |
| AACTTGGTTATTGTGAAGAA+GGG | + | chr2_1:7888173-7888192 | Msa0192160:CDS | 30.0% | |
| TGTATTATCAACAGAGAATC+AGG | - | chr2_1:7888366-7888385 | None:intergenic | 30.0% | |
| !! | CTGTTGATAATACATAGCTT+TGG | + | chr2_1:7888372-7888391 | Msa0192160:intron | 30.0% |
| !!! | TTGGTTTTGAAAAATGGTCT+TGG | + | chr2_1:7888391-7888410 | Msa0192160:intron | 30.0% |
| ATTGTCTCCAATATCTAAGT+TGG | + | chr2_1:7888449-7888468 | Msa0192160:intron | 30.0% | |
| ATTATAATATAGGGTGAGTC+TGG | + | chr2_1:7888493-7888512 | Msa0192160:intron | 30.0% | |
| CACAAACTCATCTATACAAT+GGG | - | chr2_1:7888602-7888621 | None:intergenic | 30.0% | |
| ! | TTTGTTGTGGTTAGAAGTAT+AGG | + | chr2_1:7888767-7888786 | Msa0192160:intron | 30.0% |
| TGTCGTTAGTTAGTTAACAT+TGG | + | chr2_1:7888820-7888839 | Msa0192160:intron | 30.0% | |
| GTCGTTAGTTAGTTAACATT+GGG | + | chr2_1:7888821-7888840 | Msa0192160:intron | 30.0% | |
| TTAGTTAGTTAACATTGGGA+AGG | + | chr2_1:7888825-7888844 | Msa0192160:intron | 30.0% | |
| CATCTATTTAGCAATCTATC+AGG | - | chr2_1:7888938-7888957 | None:intergenic | 30.0% | |
| AGATTGCTAAATAGATGAAG+TGG | + | chr2_1:7888941-7888960 | Msa0192160:intron | 30.0% | |
| GATTGCTAAATAGATGAAGT+GGG | + | chr2_1:7888942-7888961 | Msa0192160:intron | 30.0% | |
| TTTGACTCTTCAAAGAAAGA+GGG | + | chr2_1:7889407-7889426 | Msa0192160:CDS | 30.0% | |
| GTAACCTTCATTGTGAAATG+TGG | - | chr2_1:7886028-7886047 | None:intergenic | 35.0% | |
| CAAAGGAACAAGGGAAATTA+CGG | - | chr2_1:7886060-7886079 | None:intergenic | 35.0% | |
| GCAATGAAATCAAAGGAACA+AGG | - | chr2_1:7886070-7886089 | None:intergenic | 35.0% | |
| CTGAATTAGCCCATCTAAAT+TGG | - | chr2_1:7886719-7886738 | None:intergenic | 35.0% | |
| ! | ACATCAAGTTGTTATTGGTG+TGG | - | chr2_1:7886968-7886987 | None:intergenic | 35.0% |
| ACCAATAACAACTTGATGTG+TGG | + | chr2_1:7886969-7886988 | Msa0192160:intron | 35.0% | |
| ! | TCCACACATCAAGTTGTTAT+TGG | - | chr2_1:7886973-7886992 | None:intergenic | 35.0% |
| GCAACCAAAATCAAAGTGTA+TGG | + | chr2_1:7887008-7887027 | Msa0192160:intron | 35.0% | |
| !! | AAGAATTTGTTGACCCAGTT+CGG | + | chr2_1:7887091-7887110 | Msa0192160:intron | 35.0% |
| ! | CTACTCATCATATAGTGGAA+CGG | - | chr2_1:7887153-7887172 | None:intergenic | 35.0% |
| TAACGCTACTCATCATATAG+TGG | - | chr2_1:7887158-7887177 | None:intergenic | 35.0% | |
| GCGTTACAAAGAGATATCAA+TGG | + | chr2_1:7887172-7887191 | Msa0192160:intron | 35.0% | |
| ACTATTAGGATTGAGTCTCT+TGG | - | chr2_1:7887254-7887273 | None:intergenic | 35.0% | |
| AATCCTAATAGTGTTTCCCA+AGG | + | chr2_1:7887262-7887281 | Msa0192160:intron | 35.0% | |
| GAAAGGCAACAACAAAACTA+GGG | - | chr2_1:7887341-7887360 | None:intergenic | 35.0% | |
| AGAAAGGCAACAACAAAACT+AGG | - | chr2_1:7887342-7887361 | None:intergenic | 35.0% | |
| TAACTCTCACAGTATGTTAG+TGG | + | chr2_1:7887627-7887646 | Msa0192160:intron | 35.0% | |
| AATTGGCAGCTGACAAATTT+GGG | - | chr2_1:7887799-7887818 | None:intergenic | 35.0% | |
| AAATTGGCAGCTGACAAATT+TGG | - | chr2_1:7887800-7887819 | None:intergenic | 35.0% | |
| !!! | TTTTTTATAATACCAGCGGC+TGG | + | chr2_1:7887885-7887904 | Msa0192160:intron | 35.0% |
| TAATATTAGAGACGGCAAAG+TGG | - | chr2_1:7887980-7887999 | None:intergenic | 35.0% | |
| TTGCCGTCTCTAATATTAGA+TGG | + | chr2_1:7887982-7888001 | Msa0192160:intron | 35.0% | |
| GAACTTGGTTATTGTGAAGA+AGG | + | chr2_1:7888172-7888191 | Msa0192160:CDS | 35.0% | |
| ! | TTTTCAACATCAGTCAAACC+AGG | - | chr2_1:7888212-7888231 | None:intergenic | 35.0% |
| ATGTTGAAAAGCCAAGAATG+AGG | + | chr2_1:7888222-7888241 | Msa0192160:CDS | 35.0% | |
| TGTTGAAAAGCCAAGAATGA+GGG | + | chr2_1:7888223-7888242 | Msa0192160:CDS | 35.0% | |
| ! | ATTGAAGAGCTTACGGATTT+TGG | - | chr2_1:7888264-7888283 | None:intergenic | 35.0% |
| TGGAAAGATTGAAGAGCTTA+CGG | - | chr2_1:7888271-7888290 | None:intergenic | 35.0% | |
| TAAGCTCTTCAATCTTTCCA+AGG | + | chr2_1:7888271-7888290 | Msa0192160:CDS | 35.0% | |
| ! | GGAAGAAATTTTACCTGCTT+TGG | - | chr2_1:7888345-7888364 | None:intergenic | 35.0% |
| CCACAAACTCATCTATACAA+TGG | - | chr2_1:7888603-7888622 | None:intergenic | 35.0% | |
| CCATTGTATAGATGAGTTTG+TGG | + | chr2_1:7888600-7888619 | Msa0192160:intron | 35.0% | |
| !! | TTTTCAAGGATTGATGGGAA+GGG | - | chr2_1:7888657-7888676 | None:intergenic | 35.0% |
| !!! | TTTTTCAAGGATTGATGGGA+AGG | - | chr2_1:7888658-7888677 | None:intergenic | 35.0% |
| !!! | GGTTTTAAGTTTAGTGGGAA+GGG | - | chr2_1:7888724-7888743 | None:intergenic | 35.0% |
| !!! | AGGTTTTAAGTTTAGTGGGA+AGG | - | chr2_1:7888725-7888744 | None:intergenic | 35.0% |
| !!! | GGAAAGTAGTTTTGTAATCG+CGG | + | chr2_1:7888853-7888872 | Msa0192160:intron | 35.0% |
| !!! | TGTTTTGAGAGGAAGATTTC+AGG | + | chr2_1:7888900-7888919 | Msa0192160:intron | 35.0% |
| ! | ATATTCCCGTTGCTGTTAAT+AGG | + | chr2_1:7888965-7888984 | Msa0192160:intron | 35.0% |
| TAGTTCCTATTAACAGCAAC+GGG | - | chr2_1:7888973-7888992 | None:intergenic | 35.0% | |
| CTAGTTCCTATTAACAGCAA+CGG | - | chr2_1:7888974-7888993 | None:intergenic | 35.0% | |
| ACAAGAACTGAATTGCAACA+GGG | + | chr2_1:7889009-7889028 | Msa0192160:intron | 35.0% | |
| AGTAGGAAATTAGTTGAGAG+TGG | - | chr2_1:7889124-7889143 | None:intergenic | 35.0% | |
| ATGACAATTATTACAGCGGT+CGG | + | chr2_1:7889156-7889175 | Msa0192160:intron | 35.0% | |
| AAGGAACCCAAATAAAAGAG+CGG | - | chr2_1:7889193-7889212 | None:intergenic | 35.0% | |
| ! | CTCTTTCTTTGAAGAGTCAA+AGG | - | chr2_1:7889408-7889427 | None:intergenic | 35.0% |
| CTTTGACTCTTCAAAGAAAG+AGG | + | chr2_1:7889406-7889425 | Msa0192160:CDS | 35.0% | |
| AATTGCCAAAGCAAAATCAG+AGG | + | chr2_1:7889455-7889474 | Msa0192160:CDS | 35.0% | |
| ! | ATCTAGAGGCAAGAAGTTTT+TGG | - | chr2_1:7889491-7889510 | None:intergenic | 35.0% |
| TTGGTCTCTTGACATATAGT+TGG | + | chr2_1:7889875-7889894 | Msa0192160:three_prime_UTR | 35.0% | |
| TGGTCTCTTGACATATAGTT+GGG | + | chr2_1:7889876-7889895 | Msa0192160:three_prime_UTR | 35.0% | |
| !! | CATCGATTTCAAGCTTCTTC+TGG | - | chr2_1:7886157-7886176 | None:intergenic | 40.0% |
| ! | AGGATCTCACAAGAGGTTTT+GGG | + | chr2_1:7886305-7886324 | Msa0192160:CDS | 40.0% |
| TTGCTACTCGCAGGAATTTA+AGG | + | chr2_1:7886420-7886439 | Msa0192160:intron | 40.0% | |
| TGCTACTCGCAGGAATTTAA+GGG | + | chr2_1:7886421-7886440 | Msa0192160:intron | 40.0% | |
| GGATACGTCTTCAAAATCAC+TGG | + | chr2_1:7886442-7886461 | Msa0192160:CDS | 40.0% | |
| TACGTCTTCAAAATCACTGG+TGG | + | chr2_1:7886445-7886464 | Msa0192160:CDS | 40.0% | |
| ACAAGGATTTCCAATGAAGC+AGG | + | chr2_1:7886477-7886496 | Msa0192160:CDS | 40.0% | |
| CAAGGATTTCCAATGAAGCA+GGG | + | chr2_1:7886478-7886497 | Msa0192160:CDS | 40.0% | |
| GTAGAAAGGTTATACCTCTG+TGG | - | chr2_1:7886537-7886556 | None:intergenic | 40.0% | |
| CCATCATCACCAACACAAAT+GGG | - | chr2_1:7886643-7886662 | None:intergenic | 40.0% | |
| TCTCCGGTTCCAATTTAGAT+GGG | + | chr2_1:7886707-7886726 | Msa0192160:intron | 40.0% | |
| TAGCCCATCTAAATTGGAAC+CGG | - | chr2_1:7886713-7886732 | None:intergenic | 40.0% | |
| ! | TCATCATATAGTGGAACGGA+GGG | - | chr2_1:7887149-7887168 | None:intergenic | 40.0% |
| AGGATTGAGTCTCTTGGTTA+CGG | - | chr2_1:7887248-7887267 | None:intergenic | 40.0% | |
| TCACCTTGGGAAACACTATT+AGG | - | chr2_1:7887268-7887287 | None:intergenic | 40.0% | |
| !! | TTTGTGGGTTGATTCACCTT+GGG | - | chr2_1:7887281-7887300 | None:intergenic | 40.0% |
| GCAACAAAACTAGGGTTTGT+GGG | - | chr2_1:7887296-7887315 | None:intergenic | 40.0% | |
| GTCTCTTGGCAACAAAACTA+GGG | - | chr2_1:7887304-7887323 | None:intergenic | 40.0% | |
| TGTCTCTTGGCAACAAAACT+AGG | - | chr2_1:7887305-7887324 | None:intergenic | 40.0% | |
| GCTGAAACAAGGGTTTAGAA+AGG | - | chr2_1:7887358-7887377 | None:intergenic | 40.0% | |
| AGATAGAAGGGCTGAAACAA+GGG | - | chr2_1:7887368-7887387 | None:intergenic | 40.0% | |
| GATGGTTGAAGAATTTCGTG+AGG | - | chr2_1:7887550-7887569 | None:intergenic | 40.0% | |
| ACGAAATTCTTCAACCATCG+TGG | + | chr2_1:7887551-7887570 | Msa0192160:intron | 40.0% | |
| ATTGGCAGCTGACAAATTTG+GGG | - | chr2_1:7887798-7887817 | None:intergenic | 40.0% | |
| CAATTAACACGTCAAAGGAG+GGG | - | chr2_1:7887948-7887967 | None:intergenic | 40.0% | |
| GCAATTAACACGTCAAAGGA+GGG | - | chr2_1:7887949-7887968 | None:intergenic | 40.0% | |
| AGCAATTAACACGTCAAAGG+AGG | - | chr2_1:7887950-7887969 | None:intergenic | 40.0% | |
| GTCAGCAATTAACACGTCAA+AGG | - | chr2_1:7887953-7887972 | None:intergenic | 40.0% | |
| TAACCAAGTTCAGAACAGAG+AGG | - | chr2_1:7888163-7888182 | None:intergenic | 40.0% | |
| ! | AAGGGTGAAAATGATTTGCC+TGG | + | chr2_1:7888191-7888210 | Msa0192160:CDS | 40.0% |
| GTTGAAAAGCCAAGAATGAG+GGG | + | chr2_1:7888224-7888243 | Msa0192160:CDS | 40.0% | |
| ! | TTTCCAAGGATGATGATGTC+AGG | + | chr2_1:7888285-7888304 | Msa0192160:CDS | 40.0% |
| TAATATAGGGTGAGTCTGGT+TGG | + | chr2_1:7888497-7888516 | Msa0192160:intron | 40.0% | |
| GTTAACATTGGGAAGGTAGT+TGG | + | chr2_1:7888832-7888851 | Msa0192160:intron | 40.0% | |
| CACAAGAACTGAATTGCAAC+AGG | + | chr2_1:7889008-7889027 | Msa0192160:intron | 40.0% | |
| ATCATGCAAGTCCATGAAAG+CGG | - | chr2_1:7889218-7889237 | None:intergenic | 40.0% | |
| CTTTCATGGACTTGCATGAT+AGG | + | chr2_1:7889218-7889237 | Msa0192160:intron | 40.0% | |
| !! | AGGTTGACTTGTTCTATCTG+AGG | + | chr2_1:7889241-7889260 | Msa0192160:intron | 40.0% |
| TAACACGTATCTGATTGTGC+AGG | + | chr2_1:7889339-7889358 | Msa0192160:intron | 40.0% | |
| AACACGTATCTGATTGTGCA+GGG | + | chr2_1:7889340-7889359 | Msa0192160:intron | 40.0% | |
| ACTTCTTGCCTCTAGATTGA+AGG | + | chr2_1:7889494-7889513 | Msa0192160:CDS | 40.0% | |
| GTTTGGCTAAGAAGAGATCA+AGG | + | chr2_1:7889541-7889560 | Msa0192160:CDS | 40.0% | |
| AGAAGCTACTCAATCCATCA+AGG | - | chr2_1:7889741-7889760 | None:intergenic | 40.0% | |
| TACTCGTCTGATGAATCGAT+TGG | + | chr2_1:7889856-7889875 | Msa0192160:three_prime_UTR | 40.0% | |
| GGTCTCTTGACATATAGTTG+GGG | + | chr2_1:7889877-7889896 | Msa0192160:three_prime_UTR | 40.0% | |
| GCGGTTATTTACACATGTTG+TGG | + | chr2_1:7889915-7889934 | Msa0192160:three_prime_UTR | 40.0% | |
| AACGTTGCAAATCCAACCAC+TGG | + | chr2_1:7886128-7886147 | Msa0192160:CDS | 45.0% | |
| ! | GAGGATCTCACAAGAGGTTT+TGG | + | chr2_1:7886304-7886323 | Msa0192160:CDS | 45.0% |
| !!! | GAGGTTTTGGGTGATGCTTT+AGG | + | chr2_1:7886317-7886336 | Msa0192160:CDS | 45.0% |
| ! | ACTGGTGGATGTGACAAACA+AGG | + | chr2_1:7886460-7886479 | Msa0192160:CDS | 45.0% |
| GTTAACACACCCTGCTTCAT+TGG | - | chr2_1:7886490-7886509 | None:intergenic | 45.0% | |
| TTATACCTCTGTGGAGCAAG+AGG | - | chr2_1:7886528-7886547 | None:intergenic | 45.0% | |
| !! | CCCATTTGTGTTGGTGATGA+TGG | + | chr2_1:7886640-7886659 | Msa0192160:intron | 45.0% |
| GCCATCATCACCAACACAAA+TGG | - | chr2_1:7886644-7886663 | None:intergenic | 45.0% | |
| AGATTCAAACCGAAACCTCG+AGG | - | chr2_1:7886688-7886707 | None:intergenic | 45.0% | |
| ! | GGTTTCGGTTTGAATCTCTC+CGG | + | chr2_1:7886691-7886710 | Msa0192160:intron | 45.0% |
| CTCTCCGGTTCCAATTTAGA+TGG | + | chr2_1:7886706-7886725 | Msa0192160:intron | 45.0% | |
| ! | TTATTCGTTTCCTGGTTCGC+TGG | + | chr2_1:7886843-7886862 | Msa0192160:intron | 45.0% |
| ! | TATTCGTTTCCTGGTTCGCT+GGG | + | chr2_1:7886844-7886863 | Msa0192160:intron | 45.0% |
| CACTTATACGAGACCCAAAC+TGG | + | chr2_1:7886903-7886922 | Msa0192160:intron | 45.0% | |
| ACAACTTGATGTGTGGAGCA+AGG | + | chr2_1:7886976-7886995 | Msa0192160:intron | 45.0% | |
| CAACTTGATGTGTGGAGCAA+GGG | + | chr2_1:7886977-7886996 | Msa0192160:intron | 45.0% | |
| AGGTCAATTTGGACCGAACT+GGG | - | chr2_1:7887107-7887126 | None:intergenic | 45.0% | |
| TAGGTCAATTTGGACCGAAC+TGG | - | chr2_1:7887108-7887127 | None:intergenic | 45.0% | |
| GGTCCAAATTGACCTAGTCT+GGG | + | chr2_1:7887112-7887131 | Msa0192160:intron | 45.0% | |
| GTCCAAATTGACCTAGTCTG+GGG | + | chr2_1:7887113-7887132 | Msa0192160:intron | 45.0% | |
| TCCAAATTGACCTAGTCTGG+GGG | + | chr2_1:7887114-7887133 | Msa0192160:intron | 45.0% | |
| ! | CTCATCATATAGTGGAACGG+AGG | - | chr2_1:7887150-7887169 | None:intergenic | 45.0% |
| GGATTTGGGTAGAATTAGGC+GGG | - | chr2_1:7887215-7887234 | None:intergenic | 45.0% | |
| GGGATTTGGGTAGAATTAGG+CGG | - | chr2_1:7887216-7887235 | None:intergenic | 45.0% | |
| GCTGGGATTTGGGTAGAATT+AGG | - | chr2_1:7887219-7887238 | None:intergenic | 45.0% | |
| GGATTGAGTCTCTTGGTTAC+GGG | - | chr2_1:7887247-7887266 | None:intergenic | 45.0% | |
| !! | GTTTGTGGGTTGATTCACCT+TGG | - | chr2_1:7887282-7887301 | None:intergenic | 45.0% |
| GGCAACAAAACTAGGGTTTG+TGG | - | chr2_1:7887297-7887316 | None:intergenic | 45.0% | |
| GAGATAGAAGGGCTGAAACA+AGG | - | chr2_1:7887369-7887388 | None:intergenic | 45.0% | |
| ! | TGGATTTTTCGTGCCACGAT+GGG | - | chr2_1:7887519-7887538 | None:intergenic | 45.0% |
| AATTTCGTGAGGCAAGTCAC+TGG | - | chr2_1:7887539-7887558 | None:intergenic | 45.0% | |
| TTGGCAGCTGACAAATTTGG+GGG | - | chr2_1:7887797-7887816 | None:intergenic | 45.0% | |
| TGACGTGTTAATTGCTGACC+TGG | + | chr2_1:7887954-7887973 | Msa0192160:intron | 45.0% | |
| GAAGAAGGAAGTCTGTTCGT+GGG | + | chr2_1:7888120-7888139 | Msa0192160:CDS | 45.0% | |
| AGTTCAGAACAGAGAGGTCT+GGG | - | chr2_1:7888157-7888176 | None:intergenic | 45.0% | |
| AAGTTCAGAACAGAGAGGTC+TGG | - | chr2_1:7888158-7888177 | None:intergenic | 45.0% | |
| ! | AGACCTCTCTGTTCTGAACT+TGG | + | chr2_1:7888157-7888176 | Msa0192160:CDS | 45.0% |
| !! | CGGATTTTGGAAGCTCTCTT+AGG | - | chr2_1:7888251-7888270 | None:intergenic | 45.0% |
| CTTCCTGACATCATCATCCT+TGG | - | chr2_1:7888291-7888310 | None:intergenic | 45.0% | |
| AGTATGTCAACACCTACCGT+CGG | + | chr2_1:7888309-7888328 | Msa0192160:CDS | 45.0% | |
| CTTTGGTTGTGAAAGTCCGA+CGG | - | chr2_1:7888328-7888347 | None:intergenic | 45.0% | |
| ! | GTGGAGCAAGACTGTACTTT+TGG | + | chr2_1:7888619-7888638 | Msa0192160:intron | 45.0% |
| TAGTGGGAAGGGATAGAAGT+CGG | - | chr2_1:7888713-7888732 | None:intergenic | 45.0% | |
| GTCATAAGTTAGCTGGCAGT+AGG | - | chr2_1:7889141-7889160 | None:intergenic | 45.0% | |
| TCATGCAAGTCCATGAAAGC+GGG | - | chr2_1:7889217-7889236 | None:intergenic | 45.0% | |
| TCATGGACTTGCATGATAGG+AGG | + | chr2_1:7889221-7889240 | Msa0192160:intron | 45.0% | |
| ! | TGCTGCCTCTGATTTTGCTT+TGG | - | chr2_1:7889463-7889482 | None:intergenic | 45.0% |
| CTCTAGATTGAAGGAGCAGA+GGG | + | chr2_1:7889503-7889522 | Msa0192160:CDS | 45.0% | |
| TCTTAGCCAAACTCTCACTG+CGG | - | chr2_1:7889533-7889552 | None:intergenic | 45.0% | |
| GCTTCTTGATCTCTTCTCAC+CGG | + | chr2_1:7889755-7889774 | Msa0192160:three_prime_UTR | 45.0% | |
| ! | GGGGTATCTATTGACTGTTG+CGG | + | chr2_1:7889896-7889915 | Msa0192160:three_prime_UTR | 45.0% |
| GACAAGGCTACAAACACAAC+AGG | - | chr2_1:7889942-7889961 | None:intergenic | 45.0% | |
| !! | TTGTAGCCTTGTCTGTCACT+TGG | + | chr2_1:7889949-7889968 | Msa0192160:three_prime_UTR | 45.0% |
| !! | TGTAGCCTTGTCTGTCACTT+GGG | + | chr2_1:7889950-7889969 | Msa0192160:three_prime_UTR | 45.0% |
| GAGCTTCTTCGTTCGCGATA+CGG | - | chr2_1:7885995-7886014 | None:intergenic | 50.0% | |
| TTCTTCTGGCAACCAGTGGT+TGG | - | chr2_1:7886143-7886162 | None:intergenic | 50.0% | |
| AAGCTTCTTCTGGCAACCAG+TGG | - | chr2_1:7886147-7886166 | None:intergenic | 50.0% | |
| !!! | GTCGTGCATTTTGGGACAAG+AGG | + | chr2_1:7886285-7886304 | Msa0192160:intron | 50.0% |
| GGACAAGAGGATCTCACAAG+AGG | + | chr2_1:7886298-7886317 | Msa0192160:CDS | 50.0% | |
| ! | TGCGTGATTTTGCTACTCGC+AGG | + | chr2_1:7886411-7886430 | Msa0192160:intron | 50.0% |
| !! | TGGTGATGATGGCTTGACCT+TGG | + | chr2_1:7886651-7886670 | Msa0192160:intron | 50.0% |
| TTCAAACCGAAACCTCGAGG+AGG | - | chr2_1:7886685-7886704 | None:intergenic | 50.0% | |
| CGGTCCAAATTGACCTAGTC+TGG | + | chr2_1:7887111-7887130 | Msa0192160:intron | 50.0% | |
| TCCCCCAGACTAGGTCAATT+TGG | - | chr2_1:7887118-7887137 | None:intergenic | 50.0% | |
| AGTCTCTTGGTTACGGGAAG+AGG | - | chr2_1:7887241-7887260 | None:intergenic | 50.0% | |
| ! | GGATTTTTCGTGCCACGATG+GGG | - | chr2_1:7887518-7887537 | None:intergenic | 50.0% |
| ! | CTGGATTTTTCGTGCCACGA+TGG | - | chr2_1:7887520-7887539 | None:intergenic | 50.0% |
| ! | ACTCCTTGTTTCCGAGGACA+CGG | + | chr2_1:7888080-7888099 | Msa0192160:CDS | 50.0% |
| CGAAGAAGGAAGTCTGTTCG+TGG | + | chr2_1:7888119-7888138 | Msa0192160:CDS | 50.0% | |
| CTCTTAGGACCCCTCATTCT+TGG | - | chr2_1:7888236-7888255 | None:intergenic | 50.0% | |
| CGGACTTTCACAACCAAAGC+AGG | + | chr2_1:7888329-7888348 | Msa0192160:CDS | 50.0% | |
| CAAGTCCATGAAAGCGGGAA+AGG | - | chr2_1:7889212-7889231 | None:intergenic | 50.0% | |
| ! | TGACCAGGCGCTGTATCTTT+GGG | - | chr2_1:7889383-7889402 | None:intergenic | 50.0% |
| GAAGAGTCAAAGGAGTGACC+AGG | - | chr2_1:7889398-7889417 | None:intergenic | 50.0% | |
| CCTCTGCTCCTTCAATCTAG+AGG | - | chr2_1:7889505-7889524 | None:intergenic | 50.0% | |
| CCTCTAGATTGAAGGAGCAG+AGG | + | chr2_1:7889502-7889521 | Msa0192160:CDS | 50.0% | |
| GAACACAGCAAGTACACGCA+AGG | - | chr2_1:7889797-7889816 | None:intergenic | 50.0% | |
| AAGCAGGGTGTGTTAACCCC+TGG | + | chr2_1:7886493-7886512 | Msa0192160:CDS | 55.0% | |
| AGTGCTCCTCCTCGAGGTTT+CGG | + | chr2_1:7886676-7886695 | Msa0192160:intron | 55.0% | |
| ACGGGAAGAGGCTGGGATTT+GGG | - | chr2_1:7887229-7887248 | None:intergenic | 55.0% | |
| TACGGGAAGAGGCTGGGATT+TGG | - | chr2_1:7887230-7887249 | None:intergenic | 55.0% | |
| CTTGGTTACGGGAAGAGGCT+GGG | - | chr2_1:7887236-7887255 | None:intergenic | 55.0% | |
| TCTTGGTTACGGGAAGAGGC+TGG | - | chr2_1:7887237-7887256 | None:intergenic | 55.0% | |
| CTCAAATAGTCACCAGCCGC+TGG | - | chr2_1:7887900-7887919 | None:intergenic | 55.0% | |
| AACACGTCAAAGGAGGGGAG+TGG | - | chr2_1:7887943-7887962 | None:intergenic | 55.0% | |
| TTAGAGACGGCAAAGTGGCC+AGG | - | chr2_1:7887975-7887994 | None:intergenic | 55.0% | |
| ! | GCAGGTACTCCTTGTTTCCG+AGG | + | chr2_1:7888074-7888093 | Msa0192160:intron | 55.0% |
| CTTCCGTGTCCTCGGAAACA+AGG | - | chr2_1:7888086-7888105 | None:intergenic | 55.0% | |
| CTTGTTTCCGAGGACACGGA+AGG | + | chr2_1:7888084-7888103 | Msa0192160:CDS | 55.0% | |
| GGTTGTGAAAGTCCGACGGT+AGG | - | chr2_1:7888324-7888343 | None:intergenic | 55.0% | |
| GGGTTCCTTTCCCGCTTTCA+TGG | + | chr2_1:7889204-7889223 | Msa0192160:intron | 55.0% | |
| ! | GACCAGGCGCTGTATCTTTG+GGG | - | chr2_1:7889382-7889401 | None:intergenic | 55.0% |
| ! | GTGACCAGGCGCTGTATCTT+TGG | - | chr2_1:7889384-7889403 | None:intergenic | 55.0% |
| TGCAACACCTTGCTTAGCGG+TGG | - | chr2_1:7889571-7889590 | None:intergenic | 55.0% | |
| CGCTGCAACACCTTGCTTAG+CGG | - | chr2_1:7889574-7889593 | None:intergenic | 55.0% | |
| CTCACCGGTGCAGTTCTTTC+CGG | + | chr2_1:7889770-7889789 | Msa0192160:three_prime_UTR | 55.0% | |
| AGGTCCGGAAAGAACTGCAC+CGG | - | chr2_1:7889777-7889796 | None:intergenic | 55.0% | |
| CAGCAAGTACACGCAAGGTC+CGG | - | chr2_1:7889792-7889811 | None:intergenic | 55.0% | |
| GGCAACCCAAGTGACAGACA+AGG | - | chr2_1:7889958-7889977 | None:intergenic | 55.0% | |
| CAAGAGGCGAACACGACCAG+GGG | - | chr2_1:7886512-7886531 | None:intergenic | 60.0% | |
| GCAAGAGGCGAACACGACCA+GGG | - | chr2_1:7886513-7886532 | None:intergenic | 60.0% | |
| AGCAAGAGGCGAACACGACC+AGG | - | chr2_1:7886514-7886533 | None:intergenic | 60.0% | |
| GTTCGCCTCTTGCTCCACAG+AGG | + | chr2_1:7886520-7886539 | Msa0192160:CDS | 60.0% | |
| !! | TCGAGGAGGAGCACTCTCCA+AGG | - | chr2_1:7886671-7886690 | None:intergenic | 60.0% |
| !! | TTGGAGAGTGCTCCTCCTCG+AGG | + | chr2_1:7886670-7886689 | Msa0192160:intron | 60.0% |
| AACGTGGCACGATGGTGTGC+TGG | - | chr2_1:7887491-7887510 | None:intergenic | 60.0% | |
| GGAGAAGCAACGTGCCACGA+TGG | - | chr2_1:7887568-7887587 | None:intergenic | 60.0% | |
| GGCACGTTGCTTCTCCATCG+TGG | + | chr2_1:7887572-7887591 | Msa0192160:intron | 60.0% | |
| GCAGAAGCAACGTGCCACGA+TGG | - | chr2_1:7887589-7887608 | None:intergenic | 60.0% | |
| GTCAAAGGAGGGGAGTGGCA+GGG | - | chr2_1:7887938-7887957 | None:intergenic | 60.0% | |
| CATTGCGCCTTCCGTGTCCT+CGG | - | chr2_1:7888094-7888113 | None:intergenic | 60.0% | |
| GGCGCAATGGAGAGCGAAGA+AGG | + | chr2_1:7888105-7888124 | Msa0192160:CDS | 60.0% | |
| AGCCCCAAAGATACAGCGCC+TGG | + | chr2_1:7889377-7889396 | Msa0192160:CDS | 60.0% | |
| GGAACGCCGCAGTGAGAGTT+TGG | + | chr2_1:7889524-7889543 | Msa0192160:CDS | 60.0% | |
| AGGCTCTCCACCGCTAAGCA+AGG | + | chr2_1:7889561-7889580 | Msa0192160:CDS | 60.0% | |
| ! | TCCTGGTTCGCTGGGCTGTC+CGG | + | chr2_1:7886852-7886871 | Msa0192160:intron | 65.0% |
| GCTGCTCTCTCCCCCAGACT+AGG | - | chr2_1:7887127-7887146 | None:intergenic | 65.0% | |
| AGTGGCAGGGCAACGTGAGG+CGG | - | chr2_1:7887925-7887944 | None:intergenic | 65.0% | |
| CGTCAAAGGAGGGGAGTGGC+AGG | - | chr2_1:7887939-7887958 | None:intergenic | 65.0% | |
| ! | CGAGGACACGGAAGGCGCAA+TGG | + | chr2_1:7888092-7888111 | Msa0192160:CDS | 65.0% |
| ACCGGACAGCCCAGCGAACC+AGG | - | chr2_1:7886856-7886875 | None:intergenic | 70.0% | |
| GGGGTCGCAACGTGGCACGA+TGG | - | chr2_1:7887499-7887518 | None:intergenic | 70.0% | |
| GCCACGTTGCGACCCCATCG+TGG | + | chr2_1:7887503-7887522 | Msa0192160:intron | 70.0% | |
| GCCACGATGGGGTCGCAACG+TGG | - | chr2_1:7887507-7887526 | None:intergenic | 70.0% | |
| TGGCAGGGCAACGTGAGGCG+GGG | - | chr2_1:7887923-7887942 | None:intergenic | 70.0% | |
| GTGGCAGGGCAACGTGAGGC+GGG | - | chr2_1:7887924-7887943 | None:intergenic | 70.0% | |
| GGGAGTGGCAGGGCAACGTG+AGG | - | chr2_1:7887928-7887947 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 7885950 | 7890015 | 7885950 | ID=Msa0192160;Name=Msa0192160 |
| chr2_1 | mRNA | 7885950 | 7890015 | 7885950 | ID=Msa0192160-mRNA-1;Parent=Msa0192160;Name=Msa0192160-mRNA-1;_AED=0.04;_eAED=0.04;_QI=87|1|1|1|1|1|6|419|248 |
| chr2_1 | exon | 7885950 | 7886042 | 7885950 | ID=Msa0192160-mRNA-1:exon:3668;Parent=Msa0192160-mRNA-1 |
| chr2_1 | exon | 7886125 | 7886189 | 7886125 | ID=Msa0192160-mRNA-1:exon:3669;Parent=Msa0192160-mRNA-1 |
| chr2_1 | exon | 7886286 | 7886343 | 7886286 | ID=Msa0192160-mRNA-1:exon:3670;Parent=Msa0192160-mRNA-1 |
| chr2_1 | exon | 7886433 | 7886541 | 7886433 | ID=Msa0192160-mRNA-1:exon:3671;Parent=Msa0192160-mRNA-1 |
| chr2_1 | exon | 7888078 | 7888350 | 7888078 | ID=Msa0192160-mRNA-1:exon:3672;Parent=Msa0192160-mRNA-1 |
| chr2_1 | exon | 7889361 | 7890015 | 7889361 | ID=Msa0192160-mRNA-1:exon:3673;Parent=Msa0192160-mRNA-1 |
| chr2_1 | five_prime_UTR | 7885950 | 7886036 | 7885950 | ID=Msa0192160-mRNA-1:five_prime_utr;Parent=Msa0192160-mRNA-1 |
| chr2_1 | CDS | 7886037 | 7886042 | 7886037 | ID=Msa0192160-mRNA-1:cds;Parent=Msa0192160-mRNA-1 |
| chr2_1 | CDS | 7886125 | 7886189 | 7886125 | ID=Msa0192160-mRNA-1:cds;Parent=Msa0192160-mRNA-1 |
| chr2_1 | CDS | 7886286 | 7886343 | 7886286 | ID=Msa0192160-mRNA-1:cds;Parent=Msa0192160-mRNA-1 |
| chr2_1 | CDS | 7886433 | 7886541 | 7886433 | ID=Msa0192160-mRNA-1:cds;Parent=Msa0192160-mRNA-1 |
| chr2_1 | CDS | 7888078 | 7888350 | 7888078 | ID=Msa0192160-mRNA-1:cds;Parent=Msa0192160-mRNA-1 |
| chr2_1 | CDS | 7889361 | 7889596 | 7889361 | ID=Msa0192160-mRNA-1:cds;Parent=Msa0192160-mRNA-1 |
| chr2_1 | three_prime_UTR | 7889597 | 7890015 | 7889597 | ID=Msa0192160-mRNA-1:three_prime_utr;Parent=Msa0192160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
