Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313100 | XP_003593601.1 | 99.597 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 1.84e-178 | 500 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313100 | sp|Q9M3V8|RS6_ASPOF | 93.388 | 242 | 16 | 0 | 1 | 242 | 1 | 242 | 8.25e-166 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0313100 | 0.832341 | 9.990074e-56 | -8.615850e-47 |
| Msa0002790 | Msa0313100 | 0.828041 | 1.120450e-54 | -8.615850e-47 |
| Msa0022970 | Msa0313100 | 0.854908 | 8.995896e-62 | -8.615850e-47 |
| Msa0042280 | Msa0313100 | 0.804845 | 1.776763e-49 | -8.615850e-47 |
| Msa0046830 | Msa0313100 | 0.808170 | 3.533243e-50 | -8.615850e-47 |
| Msa0048180 | Msa0313100 | 0.829313 | 5.519149e-55 | -8.615850e-47 |
| Msa0086750 | Msa0313100 | 0.804550 | 2.047159e-49 | -8.615850e-47 |
| Msa0091880 | Msa0313100 | 0.832533 | 8.952233e-56 | -8.615850e-47 |
| Msa0116670 | Msa0313100 | 0.804399 | 2.201205e-49 | -8.615850e-47 |
| Msa0118710 | Msa0313100 | 0.849961 | 2.310296e-60 | -8.615850e-47 |
| Msa0128860 | Msa0313100 | 0.822819 | 1.931335e-53 | -8.615850e-47 |
| Msa0133540 | Msa0313100 | 0.800845 | 1.190701e-48 | -8.615850e-47 |
| Msa0167480 | Msa0313100 | 0.800887 | 1.166966e-48 | -8.615850e-47 |
| Msa0173530 | Msa0313100 | 0.806081 | 9.779055e-50 | -8.615850e-47 |
| Msa0174730 | Msa0313100 | 0.822099 | 2.838942e-53 | -8.615850e-47 |
| Msa0192160 | Msa0313100 | 0.867239 | 1.584068e-65 | -8.615850e-47 |
| Msa0192230 | Msa0313100 | 0.882824 | 7.533170e-71 | -8.615850e-47 |
| Msa0218830 | Msa0313100 | 0.847117 | 1.416396e-59 | -8.615850e-47 |
| Msa0244780 | Msa0313100 | 0.803462 | 3.446407e-49 | -8.615850e-47 |
| Msa0289580 | Msa0313100 | 0.825240 | 5.220664e-54 | -8.615850e-47 |
| Msa0289610 | Msa0313100 | 0.832781 | 7.772693e-56 | -8.615850e-47 |
| Msa0300350 | Msa0313100 | 0.810064 | 1.388017e-50 | -8.615850e-47 |
| Msa0313100 | Msa0321640 | 0.821907 | 3.144816e-53 | -8.615850e-47 |
| Msa0313100 | Msa0327300 | 0.843174 | 1.648217e-58 | -8.615850e-47 |
| Msa0313100 | Msa0327330 | 0.806099 | 9.695857e-50 | -8.615850e-47 |
| Msa0313100 | Msa0348830 | 0.803620 | 3.195194e-49 | -8.615850e-47 |
| Msa0313100 | Msa0443390 | 0.819309 | 1.242425e-52 | -8.615850e-47 |
| Msa0313100 | Msa0483110 | 0.803977 | 2.694498e-49 | -8.615850e-47 |
| Msa0313100 | Msa0526540 | 0.835480 | 1.637795e-56 | -8.615850e-47 |
| Msa0313100 | Msa0527150 | 0.817640 | 2.968983e-52 | -8.615850e-47 |
| Msa0313100 | Msa0571920 | 0.834808 | 2.418854e-56 | -8.615850e-47 |
| Msa0313100 | Msa0576940 | 0.833483 | 5.195656e-56 | -8.615850e-47 |
| Msa0313100 | Msa0588360 | 0.802861 | 4.588889e-49 | -8.615850e-47 |
| Msa0313100 | Msa0603320 | 0.818798 | 1.623891e-52 | -8.615850e-47 |
| Msa0313100 | Msa0621950 | 0.830297 | 3.179273e-55 | -8.615850e-47 |
| Msa0313100 | Msa0666230 | 0.813705 | 2.235897e-51 | -8.615850e-47 |
| Msa0313100 | Msa0688850 | 0.804107 | 2.531141e-49 | -8.615850e-47 |
| Msa0313100 | Msa0738100 | 0.826064 | 3.329937e-54 | -8.615850e-47 |
| Msa0313100 | Msa0780490 | 0.825093 | 5.656592e-54 | -8.615850e-47 |
| Msa0313100 | Msa0785130 | 0.815248 | 1.019038e-51 | -8.615850e-47 |
| Msa0313100 | Msa0817540 | 0.823458 | 1.370160e-53 | -8.615850e-47 |
| Msa0313100 | Msa1019240 | 0.836462 | 9.226765e-57 | -8.615850e-47 |
| Msa0313100 | Msa1019260 | 0.828456 | 8.902215e-55 | -8.615850e-47 |
| Msa0313100 | Msa1043690 | 0.820226 | 7.669794e-53 | -8.615850e-47 |
| Msa0313100 | Msa1104140 | 0.826296 | 2.932963e-54 | -8.615850e-47 |
| Msa0313100 | Msa1104210 | 0.824026 | 1.008610e-53 | -8.615850e-47 |
| Msa0313100 | Msa1126510 | 0.801916 | 7.184829e-49 | -8.615850e-47 |
| Msa0313100 | Msa1166860 | 0.806462 | 8.128864e-50 | -8.615850e-47 |
| Msa0313100 | Msa1166870 | 0.814960 | 1.180321e-51 | -8.615850e-47 |
| Msa0313100 | Msa1215820 | 0.833626 | 4.786854e-56 | -8.615850e-47 |
| Msa0313100 | Msa1230580 | 0.805422 | 1.345448e-49 | -8.615850e-47 |
| Msa0313100 | Msa1257510 | 0.814672 | 1.367497e-51 | -8.615850e-47 |
| Msa0313100 | Msa1305050 | 0.838573 | 2.654194e-57 | -8.615850e-47 |
| Msa0313100 | Msa1349570 | 0.806177 | 9.335734e-50 | -8.615850e-47 |
| Msa0313100 | Msa1363330 | 0.833642 | 4.742712e-56 | -8.615850e-47 |
| Msa0313100 | Msa1374120 | 0.808001 | 3.838021e-50 | -8.615850e-47 |
| Msa0313100 | Msa1379760 | 0.825713 | 4.035276e-54 | -8.615850e-47 |
| Msa0313100 | Msa1386600 | 0.834117 | 3.607864e-56 | -8.615850e-47 |
| Msa0313100 | Msa1426490 | 0.813233 | 2.839786e-51 | -8.615850e-47 |
| Msa0313100 | Msa1432700 | 0.801371 | 9.293773e-49 | -8.615850e-47 |
| Msa0313100 | Msa1433310 | 0.829825 | 4.145124e-55 | -8.615850e-47 |
| Msa0313100 | Msa1448690 | 0.801122 | 1.045130e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313100 | MtrunA17_Chr2g0282411 | 99.597 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 0.0 | 500 |
| Msa0313100 | MtrunA17_Chr4g0047021 | 96.774 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 1.34e-176 | 485 |
| Msa0313100 | MtrunA17_Chr7g0234621 | 95.968 | 248 | 10 | 0 | 1 | 248 | 1 | 248 | 3.37e-175 | 481 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313100 | AT5G10360.1 | 92.562 | 242 | 18 | 0 | 1 | 242 | 1 | 242 | 1.70e-163 | 452 |
| Msa0313100 | AT4G31700.1 | 92.149 | 242 | 19 | 0 | 1 | 242 | 1 | 242 | 4.25e-155 | 431 |
| Msa0313100 | AT5G10360.2 | 73.967 | 242 | 11 | 1 | 1 | 242 | 1 | 190 | 1.10e-118 | 337 |
| Msa0313100 | AT4G31700.2 | 91.667 | 180 | 15 | 0 | 63 | 242 | 1 | 180 | 1.13e-106 | 306 |
Find 94 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAGAGCTTACGGATTT+TGG | 0.153100 | 2_4:-8411633 | None:intergenic |
| TTGCTACTCGCAGGAATTTA+AGG | 0.172205 | 2_4:+8410476 | Msa0313100:intron |
| TAAATTGTAGTCGTGCATTT+TGG | 0.186966 | 2_4:+8410331 | Msa0313100:intron |
| CTCTTAGGACCCCTCATTCT+TGG | 0.233777 | 2_4:-8411605 | None:intergenic |
| CTCACCGGTGCAGTTCTTTC+CGG | 0.238048 | 2_4:+8413146 | Msa0313100:three_prime_UTR |
| GAGGATCTCACAAGAGGTTT+TGG | 0.240752 | 2_4:+8410359 | Msa0313100:CDS |
| CATCGATTTCAAGCTTCTTC+TGG | 0.244242 | 2_4:-8410210 | None:intergenic |
| GCTCAGAGATGATAGAAATT+AGG | 0.273129 | 2_4:-8410018 | None:intergenic |
| GTGACCAGGCGCTGTATCTT+TGG | 0.280234 | 2_4:-8412757 | None:intergenic |
| TGACCAGGCGCTGTATCTTT+GGG | 0.285753 | 2_4:-8412756 | None:intergenic |
| TTCATTGTGAAATGTGGATT+TGG | 0.296731 | 2_4:-8410075 | None:intergenic |
| CTCAGAGATGATAGAAATTA+GGG | 0.312384 | 2_4:-8410017 | None:intergenic |
| GTTAACACACCCTGCTTCAT+TGG | 0.338665 | 2_4:-8410543 | None:intergenic |
| TGGTCTCTTGATATATAGTT+GGG | 0.389591 | 2_4:+8413252 | Msa0313100:three_prime_UTR |
| GGAACGCCGTAGTGAGAGTT+TGG | 0.395371 | 2_4:+8412900 | Msa0313100:CDS |
| TGCTACTCGCAGGAATTTAA+GGG | 0.399045 | 2_4:+8410477 | Msa0313100:intron |
| TTGGTCTCTTGATATATAGT+TGG | 0.408621 | 2_4:+8413251 | Msa0313100:three_prime_UTR |
| AGACCTCTCTGTTCTGAACT+TGG | 0.408965 | 2_4:+8411529 | Msa0313100:CDS |
| ACTTCTTGCCTCTAGATTGA+AGG | 0.416460 | 2_4:+8412870 | Msa0313100:CDS |
| AAACACAACAGGTCCACAAC+AGG | 0.431100 | 2_4:-8413307 | None:intergenic |
| TTGTAGCCTTGTCTGTCACT+TGG | 0.431299 | 2_4:+8413328 | Msa0313100:three_prime_UTR |
| TGGAAAGATTGAAGAGCTTA+CGG | 0.437945 | 2_4:-8411640 | None:intergenic |
| CTCTTTCTTTGAAGAGTCAA+AGG | 0.440470 | 2_4:-8412781 | None:intergenic |
| AAGTTCAGAACAGAGAGGTC+TGG | 0.450666 | 2_4:-8411527 | None:intergenic |
| AAATCCACATTTCACAATGA+AGG | 0.452458 | 2_4:+8410077 | Msa0313100:exon |
| GGCGCAATGGAGAGCGAAGA+AGG | 0.461619 | 2_4:+8411477 | Msa0313100:CDS |
| CTTTGACTCTTCAAAGAAAG+AGG | 0.462251 | 2_4:+8412782 | Msa0313100:CDS |
| CTTCCTGACATCATCATCCT+TGG | 0.467618 | 2_4:-8411660 | None:intergenic |
| AGCAAGAGGCGAACACGACC+AGG | 0.471596 | 2_4:-8410567 | None:intergenic |
| ACAAGGATTTCCAATGAAGC+AGG | 0.480359 | 2_4:+8410533 | Msa0313100:CDS |
| CGCTGAAACACCTTGCTTAG+CGG | 0.483675 | 2_4:-8412947 | None:intergenic |
| GAACTTGGTTATTGTGAAGA+AGG | 0.484415 | 2_4:+8411544 | Msa0313100:CDS |
| GACAAGGCTACAAACACAAC+AGG | 0.494733 | 2_4:-8413318 | None:intergenic |
| AAGGGTGAAAATGATTTGCC+TGG | 0.498405 | 2_4:+8411563 | Msa0313100:CDS |
| GTTATTTACACACCCTGTTG+TGG | 0.500331 | 2_4:+8413294 | Msa0313100:three_prime_UTR |
| GGATATGTCTTCAAAATCAC+TGG | 0.501460 | 2_4:+8410498 | Msa0313100:CDS |
| AGTTCAGAACAGAGAGGTCT+GGG | 0.504245 | 2_4:-8411526 | None:intergenic |
| TGTAGCCTTGTCTGTCACTT+GGG | 0.516737 | 2_4:+8413329 | Msa0313100:three_prime_UTR |
| TTTCCAAGGATGATGATGTC+AGG | 0.517231 | 2_4:+8411657 | Msa0313100:CDS |
| GACCAGGCGCTGTATCTTTG+GGG | 0.517909 | 2_4:-8412755 | None:intergenic |
| TTCTTCTGGCAACCAGTGGT+TGG | 0.519589 | 2_4:-8410196 | None:intergenic |
| CATTGCGCCTTCCGTGTCCT+CGG | 0.523620 | 2_4:-8411463 | None:intergenic |
| CAGCAAGTACACGCAAGGTC+CGG | 0.528584 | 2_4:-8413165 | None:intergenic |
| AACGTTGCAAATCCAACCAC+TGG | 0.533153 | 2_4:+8410184 | Msa0313100:CDS |
| CTTCCGTGTCCTCGGAAACA+AGG | 0.533549 | 2_4:-8411455 | None:intergenic |
| GAGCTTCTTCGTTCGCGATA+CGG | 0.533638 | 2_4:-8410048 | None:intergenic |
| GTTTGGCTAAGAAGAGATCA+AGG | 0.534691 | 2_4:+8412917 | Msa0313100:CDS |
| ATGTTGAAAAGCCAAGAATG+AGG | 0.544680 | 2_4:+8411594 | Msa0313100:CDS |
| TACTCGTCTGATGAATCGAT+TGG | 0.544878 | 2_4:+8413232 | Msa0313100:three_prime_UTR |
| GTAACCTTCATTGTGAAATG+TGG | 0.547012 | 2_4:-8410081 | None:intergenic |
| AGCCCCAAAGATACAGCGCC+TGG | 0.547274 | 2_4:+8412753 | Msa0313100:CDS |
| AAGCTTCTTCTGGCAACCAG+TGG | 0.547317 | 2_4:-8410200 | None:intergenic |
| CGGACTTTCACAACCAAAGC+AGG | 0.557230 | 2_4:+8411701 | Msa0313100:CDS |
| CGAAGAAGGAAGTCTGTTCG+TGG | 0.557458 | 2_4:+8411491 | Msa0313100:CDS |
| CGAGGACACGGAAGGCGCAA+TGG | 0.561877 | 2_4:+8411464 | Msa0313100:CDS |
| CTCTAGATTGAAGGAGCAGA+GGG | 0.562368 | 2_4:+8412879 | Msa0313100:CDS |
| GCTTCTTGATCTCTTCTCAC+CGG | 0.564576 | 2_4:+8413131 | Msa0313100:three_prime_UTR |
| AAGCAGGGTGTGTTAACCCC+TGG | 0.565983 | 2_4:+8410549 | Msa0313100:CDS |
| TGTTGAAAAGCCAAGAATGA+GGG | 0.570225 | 2_4:+8411595 | Msa0313100:CDS |
| ACTCCTTGTTTCCGAGGACA+CGG | 0.574407 | 2_4:+8411452 | Msa0313100:CDS |
| TTTGACTCTTCAAAGAAAGA+GGG | 0.574504 | 2_4:+8412783 | Msa0313100:CDS |
| AGAAGCTACTCAATCCATCA+AGG | 0.579693 | 2_4:-8413114 | None:intergenic |
| TAAGCTCTTCAATCTTTCCA+AGG | 0.582836 | 2_4:+8411643 | Msa0313100:CDS |
| AGGTCCGGAAAGAACTGCAC+CGG | 0.591209 | 2_4:-8413150 | None:intergenic |
| AACTTGGTTATTGTGAAGAA+GGG | 0.597761 | 2_4:+8411545 | Msa0313100:CDS |
| GCAGGTACTCCTTGTTTCCG+AGG | 0.602952 | 2_4:+8411446 | Msa0313100:intron |
| GAAGAGTCAAAGGAGTGACC+AGG | 0.604666 | 2_4:-8412771 | None:intergenic |
| TTATACCTCTGTGGAGCAAG+AGG | 0.605499 | 2_4:-8410581 | None:intergenic |
| CTTTGGTTGTGAAAGTCCGA+CGG | 0.609736 | 2_4:-8411697 | None:intergenic |
| CTTGTTTCCGAGGACACGGA+AGG | 0.610269 | 2_4:+8411456 | Msa0313100:CDS |
| AGGCTCTCCACCGCTAAGCA+AGG | 0.611423 | 2_4:+8412937 | Msa0313100:CDS |
| TATGTCTTCAAAATCACTGG+TGG | 0.614527 | 2_4:+8410501 | Msa0313100:CDS |
| GGACAAGAGGATCTCACAAG+AGG | 0.614846 | 2_4:+8410353 | Msa0313100:CDS |
| GCAAGAGGCGAACACGACCA+GGG | 0.615545 | 2_4:-8410566 | None:intergenic |
| GGTTGTGAAAGTCCGACGGT+AGG | 0.616762 | 2_4:-8411693 | None:intergenic |
| GGGGTATCTATTGACTGTTG+CGG | 0.620040 | 2_4:+8413272 | Msa0313100:three_prime_UTR |
| CCTCTAGATTGAAGGAGCAG+AGG | 0.621309 | 2_4:+8412878 | Msa0313100:CDS |
| AACACAACAGGTCCACAACA+GGG | 0.624269 | 2_4:-8413306 | None:intergenic |
| CCTCTGCTCCTTCAATCTAG+AGG | 0.626623 | 2_4:-8412878 | None:intergenic |
| GTTGAAAAGCCAAGAATGAG+GGG | 0.636999 | 2_4:+8411596 | Msa0313100:CDS |
| CAAGGATTTCCAATGAAGCA+GGG | 0.641279 | 2_4:+8410534 | Msa0313100:CDS |
| TCTTAGCCAAACTCTCACTA+CGG | 0.645166 | 2_4:-8412906 | None:intergenic |
| GAAGAAGGAAGTCTGTTCGT+GGG | 0.645378 | 2_4:+8411492 | Msa0313100:CDS |
| GGTCTCTTGATATATAGTTG+GGG | 0.645550 | 2_4:+8413253 | Msa0313100:three_prime_UTR |
| TGAAACACCTTGCTTAGCGG+TGG | 0.657295 | 2_4:-8412944 | None:intergenic |
| GAACACAGCAAGTACACGCA+AGG | 0.662556 | 2_4:-8413170 | None:intergenic |
| GTAGAAAGGTTATACCTCTG+TGG | 0.668019 | 2_4:-8410590 | None:intergenic |
| AATTGCCAAAGCAAAATCAG+AGG | 0.670645 | 2_4:+8412831 | Msa0313100:CDS |
| CAAGAGGCGAACACGACCAG+GGG | 0.676279 | 2_4:-8410565 | None:intergenic |
| ACTGGTGGATGTGACAAACA+AGG | 0.694989 | 2_4:+8410516 | Msa0313100:CDS |
| AGTATGTCAACACCTACCGT+CGG | 0.698935 | 2_4:+8411681 | Msa0313100:CDS |
| GGCAACCCAAGTGACAGACA+AGG | 0.707717 | 2_4:-8413334 | None:intergenic |
| GTTCGCCTCTTGCTCCACAG+AGG | 0.710024 | 2_4:+8410576 | Msa0313100:CDS |
| TAACCAAGTTCAGAACAGAG+AGG | 0.775773 | 2_4:-8411532 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATATATATAAATTT+TGG | - | chr2_4:8411174-8411193 | None:intergenic | 0.0% |
| !! | TGAATATAACAATTAATTTA+AGG | - | chr2_4:8410436-8410455 | None:intergenic | 10.0% |
| !!! | TTTTATTAATTATTATAGTG+AGG | + | chr2_4:8410640-8410659 | Msa0313100:intron | 10.0% |
| !! | ATAATTAATATACAAAACAA+AGG | - | chr2_4:8412117-8412136 | None:intergenic | 10.0% |
| !!! | AAAAAAAGATCTAAAATAGA+GGG | - | chr2_4:8410938-8410957 | None:intergenic | 15.0% |
| !! | CATAATTAACAAAACTAAAA+AGG | - | chr2_4:8411061-8411080 | None:intergenic | 15.0% |
| !! | GATTTATTAATTATGTTGTT+CGG | + | chr2_4:8411104-8411123 | Msa0313100:intron | 15.0% |
| !! | ATTTATTAATTATGTTGTTC+GGG | + | chr2_4:8411105-8411124 | Msa0313100:intron | 15.0% |
| !! | TTGTAATAGAATATTATCTA+TGG | + | chr2_4:8412643-8412662 | Msa0313100:intron | 15.0% |
| !! | TATGGATCTATAATTTATAA+TGG | + | chr2_4:8412677-8412696 | Msa0313100:intron | 15.0% |
| !! | GAAACGCAAAAAAAAAAAAA+AGG | - | chr2_4:8410261-8410280 | None:intergenic | 20.0% |
| !! | ACAAAAAAAAAACTGTAGAA+AGG | - | chr2_4:8410607-8410626 | None:intergenic | 20.0% |
| !! | TGTACTATTATTTGCATTAT+AGG | + | chr2_4:8410816-8410835 | Msa0313100:intron | 20.0% |
| !! | CAAACAGTAATAAAAACAAA+AGG | - | chr2_4:8410876-8410895 | None:intergenic | 20.0% |
| !!! | GAAAAAAAGATCTAAAATAG+AGG | - | chr2_4:8410939-8410958 | None:intergenic | 20.0% |
| !!! | GAATTTATTTTGTATGTTAG+TGG | + | chr2_4:8410982-8411001 | Msa0313100:intron | 20.0% |
| !!! | TATGTTTTTTATAATACCAG+CGG | + | chr2_4:8411253-8411272 | Msa0313100:intron | 20.0% |
| !! | ACCAAATAAATACTTAACAA+GGG | - | chr2_4:8411401-8411420 | None:intergenic | 20.0% |
| !! | TACCAAATAAATACTTAACA+AGG | - | chr2_4:8411402-8411421 | None:intergenic | 20.0% |
| !! | ACAAGTGATAAATACTAAAT+AGG | - | chr2_4:8411796-8411815 | None:intergenic | 20.0% |
| !! | AAAAATTCCAACTTAGATAT+TGG | - | chr2_4:8411831-8411850 | None:intergenic | 20.0% |
| !!! | ATCACTTGCTATTATAATAT+AGG | + | chr2_4:8411855-8411874 | Msa0313100:intron | 20.0% |
| !!! | TCACTTGCTATTATAATATA+GGG | + | chr2_4:8411856-8411875 | Msa0313100:intron | 20.0% |
| !!! | ATATTAATTATGCTTTGTTG+TGG | + | chr2_4:8412126-8412145 | Msa0313100:intron | 20.0% |
| !! | GATTTAAAAATAGAATCAGA+GGG | - | chr2_4:8412411-8412430 | None:intergenic | 20.0% |
| !! | AGATTTAAAAATAGAATCAG+AGG | - | chr2_4:8412412-8412431 | None:intergenic | 20.0% |
| !! | AATAGAATATTATCTATGGT+CGG | + | chr2_4:8412647-8412666 | Msa0313100:intron | 20.0% |
| !! | AAATAATACTACAAAAACTC+AGG | - | chr2_4:8413006-8413025 | None:intergenic | 20.0% |
| !!! | TTTTAATACTTTGTGTTTGA+TGG | + | chr2_4:8413071-8413090 | Msa0313100:three_prime_UTR | 20.0% |
| ! | ACTGCAAAACAATTTCTATA+TGG | - | chr2_4:8410162-8410181 | None:intergenic | 25.0% |
| ! | CTCTTTATCATTTACTTGAA+TGG | + | chr2_4:8410848-8410867 | Msa0313100:intron | 25.0% |
| ! | CAAAATAAATTCACCAGTTT+GGG | - | chr2_4:8410974-8410993 | None:intergenic | 25.0% |
| ! | ACAAAATAAATTCACCAGTT+TGG | - | chr2_4:8410975-8410994 | None:intergenic | 25.0% |
| !!! | TATGTTAGTGGATTTTTTGT+AGG | + | chr2_4:8410994-8411013 | Msa0313100:intron | 25.0% |
| ! | AATTTAATGTTTGTTTGAGC+AGG | + | chr2_4:8411428-8411447 | Msa0313100:intron | 25.0% |
| !!! | ATAGCTTTGGTTTTGAAAAA+TGG | + | chr2_4:8411757-8411776 | Msa0313100:intron | 25.0% |
| !!! | TCAATTTTTCAAGGATTGAT+GGG | - | chr2_4:8412034-8412053 | None:intergenic | 25.0% |
| !!! | TTCAATTTTTCAAGGATTGA+TGG | - | chr2_4:8412035-8412054 | None:intergenic | 25.0% |
| !! | TAGCTTCTTTCAATTTTTCA+AGG | - | chr2_4:8412043-8412062 | None:intergenic | 25.0% |
| !!! | ACAAAGGTTTTAAGTTTAGT+GGG | - | chr2_4:8412101-8412120 | None:intergenic | 25.0% |
| !!! | AACAAAGGTTTTAAGTTTAG+TGG | - | chr2_4:8412102-8412121 | None:intergenic | 25.0% |
| !!! | GAATATTTAGTTGTTTTGAG+AGG | + | chr2_4:8412261-8412280 | Msa0313100:intron | 25.0% |
| !! | TGTCAATTTGCAATTGTTTT+GGG | - | chr2_4:8412435-8412454 | None:intergenic | 25.0% |
| !! | TTGTCAATTTGCAATTGTTT+TGG | - | chr2_4:8412436-8412455 | None:intergenic | 25.0% |
| ! | AATAATTGTCTTAAGTTAGC+TGG | - | chr2_4:8412520-8412539 | None:intergenic | 25.0% |
| ! | ACTTAAGACAATTATTACAG+CGG | + | chr2_4:8412524-8412543 | Msa0313100:intron | 25.0% |
| !! | AAAATATCCGCTCTTTTATT+TGG | + | chr2_4:8412555-8412574 | Msa0313100:intron | 25.0% |
| !!! | AAATATCCGCTCTTTTATTT+GGG | + | chr2_4:8412556-8412575 | Msa0313100:intron | 25.0% |
| !!! | AGAATTTACTTTTACCTTGA+TGG | + | chr2_4:8413100-8413119 | Msa0313100:three_prime_UTR | 25.0% |
| ! | TACATTGAGAATCTCAAAAA+TGG | - | chr2_4:8413358-8413377 | None:intergenic | 25.0% |
| CTCAGAGATGATAGAAATTA+GGG | - | chr2_4:8410020-8410039 | None:intergenic | 30.0% | |
| TTCATTGTGAAATGTGGATT+TGG | - | chr2_4:8410078-8410097 | None:intergenic | 30.0% | |
| AAATCCACATTTCACAATGA+AGG | + | chr2_4:8410077-8410096 | Msa0313100:exon | 30.0% | |
| CAATGAAATCAAAGGAACAA+GGG | - | chr2_4:8410125-8410144 | None:intergenic | 30.0% | |
| CATAAGAGCAATGAAATCAA+AGG | - | chr2_4:8410133-8410152 | None:intergenic | 30.0% | |
| ! | TAAATTGTAGTCGTGCATTT+TGG | + | chr2_4:8410331-8410350 | Msa0313100:intron | 30.0% |
| ! | AAATTGTAGTCGTGCATTTT+GGG | + | chr2_4:8410332-8410351 | Msa0313100:intron | 30.0% |
| TACTATAAACCCATTTGTGT+TGG | + | chr2_4:8410689-8410708 | Msa0313100:intron | 30.0% | |
| TGTTTGAATTATTCGTTTCC+TGG | + | chr2_4:8410890-8410909 | Msa0313100:intron | 30.0% | |
| ! | TCTAAAATAGAGGGTTAAAC+CGG | - | chr2_4:8410929-8410948 | None:intergenic | 30.0% |
| TATTAATTATGTTGTTCGGG+TGG | + | chr2_4:8411108-8411127 | Msa0313100:intron | 30.0% | |
| ATTTGGGGGAAAAACATAAA+TGG | - | chr2_4:8411141-8411160 | None:intergenic | 30.0% | |
| GAACCATCTAATATTAGAGA+CGG | - | chr2_4:8411360-8411379 | None:intergenic | 30.0% | |
| GCCCTTGTTAAGTATTTATT+TGG | + | chr2_4:8411397-8411416 | Msa0313100:intron | 30.0% | |
| AACTTGGTTATTGTGAAGAA+GGG | + | chr2_4:8411545-8411564 | Msa0313100:CDS | 30.0% | |
| TGTATTATCAACAGAGAATC+AGG | - | chr2_4:8411738-8411757 | None:intergenic | 30.0% | |
| !! | CTGTTGATAATACATAGCTT+TGG | + | chr2_4:8411744-8411763 | Msa0313100:intron | 30.0% |
| !!! | TTGGTTTTGAAAAATGGTCT+TGG | + | chr2_4:8411763-8411782 | Msa0313100:intron | 30.0% |
| ATTGTCTCCAATATCTAAGT+TGG | + | chr2_4:8411821-8411840 | Msa0313100:intron | 30.0% | |
| ATTATAATATAGGGTGAGTC+TGG | + | chr2_4:8411865-8411884 | Msa0313100:intron | 30.0% | |
| CACAAACTCATCTATACAAT+GGG | - | chr2_4:8411974-8411993 | None:intergenic | 30.0% | |
| ! | TTTGTTGTGGTTAGAAGTAT+AGG | + | chr2_4:8412139-8412158 | Msa0313100:intron | 30.0% |
| TGTCGTTAGTTAGTTAACAT+TGG | + | chr2_4:8412192-8412211 | Msa0313100:intron | 30.0% | |
| GTCGTTAGTTAGTTAACATT+GGG | + | chr2_4:8412193-8412212 | Msa0313100:intron | 30.0% | |
| TTAGTTAGTTAACATTGGGA+AGG | + | chr2_4:8412197-8412216 | Msa0313100:intron | 30.0% | |
| CATCTATTTAGCAATCTATC+AGG | - | chr2_4:8412310-8412329 | None:intergenic | 30.0% | |
| AGATTGCTAAATAGATGAAG+TGG | + | chr2_4:8412313-8412332 | Msa0313100:intron | 30.0% | |
| GATTGCTAAATAGATGAAGT+GGG | + | chr2_4:8412314-8412333 | Msa0313100:intron | 30.0% | |
| TTTGACTCTTCAAAGAAAGA+GGG | + | chr2_4:8412783-8412802 | Msa0313100:CDS | 30.0% | |
| TTGGTCTCTTGATATATAGT+TGG | + | chr2_4:8413251-8413270 | Msa0313100:three_prime_UTR | 30.0% | |
| TGGTCTCTTGATATATAGTT+GGG | + | chr2_4:8413252-8413271 | Msa0313100:three_prime_UTR | 30.0% | |
| GCTCAGAGATGATAGAAATT+AGG | - | chr2_4:8410021-8410040 | None:intergenic | 35.0% | |
| GTAACCTTCATTGTGAAATG+TGG | - | chr2_4:8410084-8410103 | None:intergenic | 35.0% | |
| CAAAGGAACAAGGGAAATTA+CGG | - | chr2_4:8410116-8410135 | None:intergenic | 35.0% | |
| GCAATGAAATCAAAGGAACA+AGG | - | chr2_4:8410126-8410145 | None:intergenic | 35.0% | |
| GGATATGTCTTCAAAATCAC+TGG | + | chr2_4:8410498-8410517 | Msa0313100:CDS | 35.0% | |
| TATGTCTTCAAAATCACTGG+TGG | + | chr2_4:8410501-8410520 | Msa0313100:CDS | 35.0% | |
| CTGAATTAGCCCATCTAAAT+TGG | - | chr2_4:8410774-8410793 | None:intergenic | 35.0% | |
| ! | TTTTGGCAGCTGACAAATTT+GGG | - | chr2_4:8411157-8411176 | None:intergenic | 35.0% |
| !! | ATTTTGGCAGCTGACAAATT+TGG | - | chr2_4:8411158-8411177 | None:intergenic | 35.0% |
| !!! | TTTTTTATAATACCAGCGGC+TGG | + | chr2_4:8411257-8411276 | Msa0313100:intron | 35.0% |
| TAATATTAGAGACGGCAAAG+TGG | - | chr2_4:8411352-8411371 | None:intergenic | 35.0% | |
| TTGCCGTCTCTAATATTAGA+TGG | + | chr2_4:8411354-8411373 | Msa0313100:intron | 35.0% | |
| GAACTTGGTTATTGTGAAGA+AGG | + | chr2_4:8411544-8411563 | Msa0313100:CDS | 35.0% | |
| ! | TTTTCAACATCAGTCAAACC+AGG | - | chr2_4:8411584-8411603 | None:intergenic | 35.0% |
| ATGTTGAAAAGCCAAGAATG+AGG | + | chr2_4:8411594-8411613 | Msa0313100:CDS | 35.0% | |
| TGTTGAAAAGCCAAGAATGA+GGG | + | chr2_4:8411595-8411614 | Msa0313100:CDS | 35.0% | |
| ! | ATTGAAGAGCTTACGGATTT+TGG | - | chr2_4:8411636-8411655 | None:intergenic | 35.0% |
| TGGAAAGATTGAAGAGCTTA+CGG | - | chr2_4:8411643-8411662 | None:intergenic | 35.0% | |
| TAAGCTCTTCAATCTTTCCA+AGG | + | chr2_4:8411643-8411662 | Msa0313100:CDS | 35.0% | |
| ! | GGAAGAAATTTTACCTGCTT+TGG | - | chr2_4:8411717-8411736 | None:intergenic | 35.0% |
| CCACAAACTCATCTATACAA+TGG | - | chr2_4:8411975-8411994 | None:intergenic | 35.0% | |
| CCATTGTATAGATGAGTTTG+TGG | + | chr2_4:8411972-8411991 | Msa0313100:intron | 35.0% | |
| !! | TTTTCAAGGATTGATGGGAA+GGG | - | chr2_4:8412029-8412048 | None:intergenic | 35.0% |
| !!! | TTTTTCAAGGATTGATGGGA+AGG | - | chr2_4:8412030-8412049 | None:intergenic | 35.0% |
| !!! | GGTTTTAAGTTTAGTGGGAA+GGG | - | chr2_4:8412096-8412115 | None:intergenic | 35.0% |
| !!! | AGGTTTTAAGTTTAGTGGGA+AGG | - | chr2_4:8412097-8412116 | None:intergenic | 35.0% |
| GGAAAGTAGTTTAGTAATCG+CGG | + | chr2_4:8412225-8412244 | Msa0313100:intron | 35.0% | |
| !!! | TGTTTTGAGAGGAAGATTTC+AGG | + | chr2_4:8412272-8412291 | Msa0313100:intron | 35.0% |
| ! | ATATTCCCGTTGCTGTTAAT+AGG | + | chr2_4:8412337-8412356 | Msa0313100:intron | 35.0% |
| TAGTTCCTATTAACAGCAAC+GGG | - | chr2_4:8412345-8412364 | None:intergenic | 35.0% | |
| CTAGTTCCTATTAACAGCAA+CGG | - | chr2_4:8412346-8412365 | None:intergenic | 35.0% | |
| ACAAGAACTGAATTGCAACA+GGG | + | chr2_4:8412381-8412400 | Msa0313100:intron | 35.0% | |
| AGTAGGAAATTAGTTGAGAG+TGG | - | chr2_4:8412496-8412515 | None:intergenic | 35.0% | |
| AAGACAATTATTACAGCGGT+CGG | + | chr2_4:8412528-8412547 | Msa0313100:intron | 35.0% | |
| AAGGAACCCAAATAAAAGAG+CGG | - | chr2_4:8412565-8412584 | None:intergenic | 35.0% | |
| ! | CTCTTTCTTTGAAGAGTCAA+AGG | - | chr2_4:8412784-8412803 | None:intergenic | 35.0% |
| CTTTGACTCTTCAAAGAAAG+AGG | + | chr2_4:8412782-8412801 | Msa0313100:CDS | 35.0% | |
| AATTGCCAAAGCAAAATCAG+AGG | + | chr2_4:8412831-8412850 | Msa0313100:CDS | 35.0% | |
| ! | ATCTAGAGGCAAGAAGTTTT+TGG | - | chr2_4:8412867-8412886 | None:intergenic | 35.0% |
| GGTCTCTTGATATATAGTTG+GGG | + | chr2_4:8413253-8413272 | Msa0313100:three_prime_UTR | 35.0% | |
| !! | CATCGATTTCAAGCTTCTTC+TGG | - | chr2_4:8410213-8410232 | None:intergenic | 40.0% |
| ! | AGGATCTCACAAGAGGTTTT+GGG | + | chr2_4:8410360-8410379 | Msa0313100:CDS | 40.0% |
| TTGCTACTCGCAGGAATTTA+AGG | + | chr2_4:8410476-8410495 | Msa0313100:intron | 40.0% | |
| TGCTACTCGCAGGAATTTAA+GGG | + | chr2_4:8410477-8410496 | Msa0313100:intron | 40.0% | |
| ACAAGGATTTCCAATGAAGC+AGG | + | chr2_4:8410533-8410552 | Msa0313100:CDS | 40.0% | |
| CAAGGATTTCCAATGAAGCA+GGG | + | chr2_4:8410534-8410553 | Msa0313100:CDS | 40.0% | |
| GTAGAAAGGTTATACCTCTG+TGG | - | chr2_4:8410593-8410612 | None:intergenic | 40.0% | |
| ! | AAACCCATTTGTGTTGGTGA+TGG | + | chr2_4:8410695-8410714 | Msa0313100:intron | 40.0% |
| AAGCCATCACCAACACAAAT+GGG | - | chr2_4:8410701-8410720 | None:intergenic | 40.0% | |
| TCTCCGGTTCCAATTTAGAT+GGG | + | chr2_4:8410762-8410781 | Msa0313100:intron | 40.0% | |
| TAGCCCATCTAAATTGGAAC+CGG | - | chr2_4:8410768-8410787 | None:intergenic | 40.0% | |
| TTTGGCAGCTGACAAATTTG+GGG | - | chr2_4:8411156-8411175 | None:intergenic | 40.0% | |
| CAATTAACACGTCAAAGGAG+GGG | - | chr2_4:8411320-8411339 | None:intergenic | 40.0% | |
| GCAATTAACACGTCAAAGGA+GGG | - | chr2_4:8411321-8411340 | None:intergenic | 40.0% | |
| AGCAATTAACACGTCAAAGG+AGG | - | chr2_4:8411322-8411341 | None:intergenic | 40.0% | |
| GTCAGCAATTAACACGTCAA+AGG | - | chr2_4:8411325-8411344 | None:intergenic | 40.0% | |
| TAACCAAGTTCAGAACAGAG+AGG | - | chr2_4:8411535-8411554 | None:intergenic | 40.0% | |
| ! | AAGGGTGAAAATGATTTGCC+TGG | + | chr2_4:8411563-8411582 | Msa0313100:CDS | 40.0% |
| GTTGAAAAGCCAAGAATGAG+GGG | + | chr2_4:8411596-8411615 | Msa0313100:CDS | 40.0% | |
| ! | TTTCCAAGGATGATGATGTC+AGG | + | chr2_4:8411657-8411676 | Msa0313100:CDS | 40.0% |
| TAATATAGGGTGAGTCTGGT+TGG | + | chr2_4:8411869-8411888 | Msa0313100:intron | 40.0% | |
| GTTAACATTGGGAAGGTAGT+TGG | + | chr2_4:8412204-8412223 | Msa0313100:intron | 40.0% | |
| CACAAGAACTGAATTGCAAC+AGG | + | chr2_4:8412380-8412399 | Msa0313100:intron | 40.0% | |
| ATCATGCAAGTCCATGAAAG+CGG | - | chr2_4:8412590-8412609 | None:intergenic | 40.0% | |
| CTTTCATGGACTTGCATGAT+AGG | + | chr2_4:8412590-8412609 | Msa0313100:intron | 40.0% | |
| !! | AGGTTGACTTGTTCTATCTG+AGG | + | chr2_4:8412613-8412632 | Msa0313100:intron | 40.0% |
| TCTATGGTCGGTCATAACTA+TGG | + | chr2_4:8412659-8412678 | Msa0313100:intron | 40.0% | |
| TAACACGTATCTGATTGTGC+AGG | + | chr2_4:8412715-8412734 | Msa0313100:intron | 40.0% | |
| AACACGTATCTGATTGTGCA+GGG | + | chr2_4:8412716-8412735 | Msa0313100:intron | 40.0% | |
| ACTTCTTGCCTCTAGATTGA+AGG | + | chr2_4:8412870-8412889 | Msa0313100:CDS | 40.0% | |
| TCTTAGCCAAACTCTCACTA+CGG | - | chr2_4:8412909-8412928 | None:intergenic | 40.0% | |
| GTTTGGCTAAGAAGAGATCA+AGG | + | chr2_4:8412917-8412936 | Msa0313100:CDS | 40.0% | |
| AGAAGCTACTCAATCCATCA+AGG | - | chr2_4:8413117-8413136 | None:intergenic | 40.0% | |
| TACTCGTCTGATGAATCGAT+TGG | + | chr2_4:8413232-8413251 | Msa0313100:three_prime_UTR | 40.0% | |
| GTTATTTACACACCCTGTTG+TGG | + | chr2_4:8413294-8413313 | Msa0313100:three_prime_UTR | 40.0% | |
| AACGTTGCAAATCCAACCAC+TGG | + | chr2_4:8410184-8410203 | Msa0313100:CDS | 45.0% | |
| ! | GAGGATCTCACAAGAGGTTT+TGG | + | chr2_4:8410359-8410378 | Msa0313100:CDS | 45.0% |
| !!! | GAGGTTTTGGGTGATGCTTT+AGG | + | chr2_4:8410372-8410391 | Msa0313100:CDS | 45.0% |
| ! | ACTGGTGGATGTGACAAACA+AGG | + | chr2_4:8410516-8410535 | Msa0313100:CDS | 45.0% |
| GTTAACACACCCTGCTTCAT+TGG | - | chr2_4:8410546-8410565 | None:intergenic | 45.0% | |
| TTATACCTCTGTGGAGCAAG+AGG | - | chr2_4:8410584-8410603 | None:intergenic | 45.0% | |
| CAAGCCATCACCAACACAAA+TGG | - | chr2_4:8410702-8410721 | None:intergenic | 45.0% | |
| AGATTCAAACCGAAACCTCG+AGG | - | chr2_4:8410743-8410762 | None:intergenic | 45.0% | |
| ! | GGTTTCGGTTTGAATCTCTC+CGG | + | chr2_4:8410746-8410765 | Msa0313100:intron | 45.0% |
| CTCTCCGGTTCCAATTTAGA+TGG | + | chr2_4:8410761-8410780 | Msa0313100:intron | 45.0% | |
| ! | TTATTCGTTTCCTGGTTCGC+TGG | + | chr2_4:8410898-8410917 | Msa0313100:intron | 45.0% |
| ! | TATTCGTTTCCTGGTTCGCT+GGG | + | chr2_4:8410899-8410918 | Msa0313100:intron | 45.0% |
| CACTTATACGAGACCCAAAC+TGG | + | chr2_4:8410958-8410977 | Msa0313100:intron | 45.0% | |
| TTGGCAGCTGACAAATTTGG+GGG | - | chr2_4:8411155-8411174 | None:intergenic | 45.0% | |
| TGACGTGTTAATTGCTGACC+TGG | + | chr2_4:8411326-8411345 | Msa0313100:intron | 45.0% | |
| GAAGAAGGAAGTCTGTTCGT+GGG | + | chr2_4:8411492-8411511 | Msa0313100:CDS | 45.0% | |
| AGTTCAGAACAGAGAGGTCT+GGG | - | chr2_4:8411529-8411548 | None:intergenic | 45.0% | |
| AAGTTCAGAACAGAGAGGTC+TGG | - | chr2_4:8411530-8411549 | None:intergenic | 45.0% | |
| ! | AGACCTCTCTGTTCTGAACT+TGG | + | chr2_4:8411529-8411548 | Msa0313100:CDS | 45.0% |
| !! | CGGATTTTGGAAGCTCTCTT+AGG | - | chr2_4:8411623-8411642 | None:intergenic | 45.0% |
| CTTCCTGACATCATCATCCT+TGG | - | chr2_4:8411663-8411682 | None:intergenic | 45.0% | |
| AGTATGTCAACACCTACCGT+CGG | + | chr2_4:8411681-8411700 | Msa0313100:CDS | 45.0% | |
| CTTTGGTTGTGAAAGTCCGA+CGG | - | chr2_4:8411700-8411719 | None:intergenic | 45.0% | |
| ! | GTGGAGCAAGACTGTACTTT+TGG | + | chr2_4:8411991-8412010 | Msa0313100:intron | 45.0% |
| TAGTGGGAAGGGATAGAAGT+CGG | - | chr2_4:8412085-8412104 | None:intergenic | 45.0% | |
| GTCTTAAGTTAGCTGGCAGT+AGG | - | chr2_4:8412513-8412532 | None:intergenic | 45.0% | |
| TCATGCAAGTCCATGAAAGC+GGG | - | chr2_4:8412589-8412608 | None:intergenic | 45.0% | |
| TCATGGACTTGCATGATAGG+AGG | + | chr2_4:8412593-8412612 | Msa0313100:intron | 45.0% | |
| ! | TGCTGCCTCTGATTTTGCTT+TGG | - | chr2_4:8412839-8412858 | None:intergenic | 45.0% |
| CTCTAGATTGAAGGAGCAGA+GGG | + | chr2_4:8412879-8412898 | Msa0313100:CDS | 45.0% | |
| GCTTCTTGATCTCTTCTCAC+CGG | + | chr2_4:8413131-8413150 | Msa0313100:three_prime_UTR | 45.0% | |
| ! | GGGGTATCTATTGACTGTTG+CGG | + | chr2_4:8413272-8413291 | Msa0313100:three_prime_UTR | 45.0% |
| AACACAACAGGTCCACAACA+GGG | - | chr2_4:8413309-8413328 | None:intergenic | 45.0% | |
| AAACACAACAGGTCCACAAC+AGG | - | chr2_4:8413310-8413329 | None:intergenic | 45.0% | |
| GACAAGGCTACAAACACAAC+AGG | - | chr2_4:8413321-8413340 | None:intergenic | 45.0% | |
| !! | TTGTAGCCTTGTCTGTCACT+TGG | + | chr2_4:8413328-8413347 | Msa0313100:three_prime_UTR | 45.0% |
| !! | TGTAGCCTTGTCTGTCACTT+GGG | + | chr2_4:8413329-8413348 | Msa0313100:three_prime_UTR | 45.0% |
| GAGCTTCTTCGTTCGCGATA+CGG | - | chr2_4:8410051-8410070 | None:intergenic | 50.0% | |
| TTCTTCTGGCAACCAGTGGT+TGG | - | chr2_4:8410199-8410218 | None:intergenic | 50.0% | |
| AAGCTTCTTCTGGCAACCAG+TGG | - | chr2_4:8410203-8410222 | None:intergenic | 50.0% | |
| !!! | GTCGTGCATTTTGGGACAAG+AGG | + | chr2_4:8410340-8410359 | Msa0313100:intron | 50.0% |
| GGACAAGAGGATCTCACAAG+AGG | + | chr2_4:8410353-8410372 | Msa0313100:CDS | 50.0% | |
| ! | TGCGTGATTTTGCTACTCGC+AGG | + | chr2_4:8410467-8410486 | Msa0313100:intron | 50.0% |
| !! | TGTTGGTGATGGCTTGACCT+TGG | + | chr2_4:8410706-8410725 | Msa0313100:intron | 50.0% |
| TTCAAACCGAAACCTCGAGG+AGG | - | chr2_4:8410740-8410759 | None:intergenic | 50.0% | |
| ! | ACTCCTTGTTTCCGAGGACA+CGG | + | chr2_4:8411452-8411471 | Msa0313100:CDS | 50.0% |
| CGAAGAAGGAAGTCTGTTCG+TGG | + | chr2_4:8411491-8411510 | Msa0313100:CDS | 50.0% | |
| CTCTTAGGACCCCTCATTCT+TGG | - | chr2_4:8411608-8411627 | None:intergenic | 50.0% | |
| CGGACTTTCACAACCAAAGC+AGG | + | chr2_4:8411701-8411720 | Msa0313100:CDS | 50.0% | |
| CAAGTCCATGAAAGCGGGAA+AGG | - | chr2_4:8412584-8412603 | None:intergenic | 50.0% | |
| ! | TGACCAGGCGCTGTATCTTT+GGG | - | chr2_4:8412759-8412778 | None:intergenic | 50.0% |
| GAAGAGTCAAAGGAGTGACC+AGG | - | chr2_4:8412774-8412793 | None:intergenic | 50.0% | |
| CCTCTGCTCCTTCAATCTAG+AGG | - | chr2_4:8412881-8412900 | None:intergenic | 50.0% | |
| CCTCTAGATTGAAGGAGCAG+AGG | + | chr2_4:8412878-8412897 | Msa0313100:CDS | 50.0% | |
| TGAAACACCTTGCTTAGCGG+TGG | - | chr2_4:8412947-8412966 | None:intergenic | 50.0% | |
| CGCTGAAACACCTTGCTTAG+CGG | - | chr2_4:8412950-8412969 | None:intergenic | 50.0% | |
| GAACACAGCAAGTACACGCA+AGG | - | chr2_4:8413173-8413192 | None:intergenic | 50.0% | |
| AAGCAGGGTGTGTTAACCCC+TGG | + | chr2_4:8410549-8410568 | Msa0313100:CDS | 55.0% | |
| AGTGCTCCTCCTCGAGGTTT+CGG | + | chr2_4:8410731-8410750 | Msa0313100:intron | 55.0% | |
| CTCAAATAGTCACCAGCCGC+TGG | - | chr2_4:8411272-8411291 | None:intergenic | 55.0% | |
| AACACGTCAAAGGAGGGGAG+TGG | - | chr2_4:8411315-8411334 | None:intergenic | 55.0% | |
| TTAGAGACGGCAAAGTGGCC+AGG | - | chr2_4:8411347-8411366 | None:intergenic | 55.0% | |
| ! | GCAGGTACTCCTTGTTTCCG+AGG | + | chr2_4:8411446-8411465 | Msa0313100:intron | 55.0% |
| CTTCCGTGTCCTCGGAAACA+AGG | - | chr2_4:8411458-8411477 | None:intergenic | 55.0% | |
| CTTGTTTCCGAGGACACGGA+AGG | + | chr2_4:8411456-8411475 | Msa0313100:CDS | 55.0% | |
| GGTTGTGAAAGTCCGACGGT+AGG | - | chr2_4:8411696-8411715 | None:intergenic | 55.0% | |
| GGGTTCCTTTCCCGCTTTCA+TGG | + | chr2_4:8412576-8412595 | Msa0313100:intron | 55.0% | |
| ! | GACCAGGCGCTGTATCTTTG+GGG | - | chr2_4:8412758-8412777 | None:intergenic | 55.0% |
| ! | GTGACCAGGCGCTGTATCTT+TGG | - | chr2_4:8412760-8412779 | None:intergenic | 55.0% |
| GGAACGCCGTAGTGAGAGTT+TGG | + | chr2_4:8412900-8412919 | Msa0313100:CDS | 55.0% | |
| CTCACCGGTGCAGTTCTTTC+CGG | + | chr2_4:8413146-8413165 | Msa0313100:three_prime_UTR | 55.0% | |
| AGGTCCGGAAAGAACTGCAC+CGG | - | chr2_4:8413153-8413172 | None:intergenic | 55.0% | |
| CAGCAAGTACACGCAAGGTC+CGG | - | chr2_4:8413168-8413187 | None:intergenic | 55.0% | |
| GGCAACCCAAGTGACAGACA+AGG | - | chr2_4:8413337-8413356 | None:intergenic | 55.0% | |
| CAAGAGGCGAACACGACCAG+GGG | - | chr2_4:8410568-8410587 | None:intergenic | 60.0% | |
| GCAAGAGGCGAACACGACCA+GGG | - | chr2_4:8410569-8410588 | None:intergenic | 60.0% | |
| AGCAAGAGGCGAACACGACC+AGG | - | chr2_4:8410570-8410589 | None:intergenic | 60.0% | |
| GTTCGCCTCTTGCTCCACAG+AGG | + | chr2_4:8410576-8410595 | Msa0313100:CDS | 60.0% | |
| !! | TCGAGGAGGAGCACTCTCCA+AGG | - | chr2_4:8410726-8410745 | None:intergenic | 60.0% |
| !! | TTGGAGAGTGCTCCTCCTCG+AGG | + | chr2_4:8410725-8410744 | Msa0313100:intron | 60.0% |
| GTCAAAGGAGGGGAGTGGCA+GGG | - | chr2_4:8411310-8411329 | None:intergenic | 60.0% | |
| CATTGCGCCTTCCGTGTCCT+CGG | - | chr2_4:8411466-8411485 | None:intergenic | 60.0% | |
| GGCGCAATGGAGAGCGAAGA+AGG | + | chr2_4:8411477-8411496 | Msa0313100:CDS | 60.0% | |
| AGCCCCAAAGATACAGCGCC+TGG | + | chr2_4:8412753-8412772 | Msa0313100:CDS | 60.0% | |
| AGGCTCTCCACCGCTAAGCA+AGG | + | chr2_4:8412937-8412956 | Msa0313100:CDS | 60.0% | |
| ! | TCCTGGTTCGCTGGGCTGTC+CGG | + | chr2_4:8410907-8410926 | Msa0313100:intron | 65.0% |
| AGTGGCAGGGCAACGTGAGG+CGG | - | chr2_4:8411297-8411316 | None:intergenic | 65.0% | |
| CGTCAAAGGAGGGGAGTGGC+AGG | - | chr2_4:8411311-8411330 | None:intergenic | 65.0% | |
| ! | CGAGGACACGGAAGGCGCAA+TGG | + | chr2_4:8411464-8411483 | Msa0313100:CDS | 65.0% |
| ACCGGACAGCCCAGCGAACC+AGG | - | chr2_4:8410911-8410930 | None:intergenic | 70.0% | |
| TGGCAGGGCAACGTGAGGCG+GGG | - | chr2_4:8411295-8411314 | None:intergenic | 70.0% | |
| GTGGCAGGGCAACGTGAGGC+GGG | - | chr2_4:8411296-8411315 | None:intergenic | 70.0% | |
| GGGAGTGGCAGGGCAACGTG+AGG | - | chr2_4:8411300-8411319 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 8410011 | 8413394 | 8410011 | ID=Msa0313100;Name=Msa0313100 |
| chr2_4 | mRNA | 8410011 | 8413394 | 8410011 | ID=Msa0313100-mRNA-1;Parent=Msa0313100;Name=Msa0313100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=82|1|1|1|1|1|6|422|248 |
| chr2_4 | exon | 8410011 | 8410098 | 8410011 | ID=Msa0313100-mRNA-1:exon:3230;Parent=Msa0313100-mRNA-1 |
| chr2_4 | exon | 8410181 | 8410245 | 8410181 | ID=Msa0313100-mRNA-1:exon:3231;Parent=Msa0313100-mRNA-1 |
| chr2_4 | exon | 8410341 | 8410398 | 8410341 | ID=Msa0313100-mRNA-1:exon:3232;Parent=Msa0313100-mRNA-1 |
| chr2_4 | exon | 8410489 | 8410597 | 8410489 | ID=Msa0313100-mRNA-1:exon:3233;Parent=Msa0313100-mRNA-1 |
| chr2_4 | exon | 8411450 | 8411722 | 8411450 | ID=Msa0313100-mRNA-1:exon:3234;Parent=Msa0313100-mRNA-1 |
| chr2_4 | exon | 8412737 | 8413394 | 8412737 | ID=Msa0313100-mRNA-1:exon:3235;Parent=Msa0313100-mRNA-1 |
| chr2_4 | five_prime_UTR | 8410011 | 8410092 | 8410011 | ID=Msa0313100-mRNA-1:five_prime_utr;Parent=Msa0313100-mRNA-1 |
| chr2_4 | CDS | 8410093 | 8410098 | 8410093 | ID=Msa0313100-mRNA-1:cds;Parent=Msa0313100-mRNA-1 |
| chr2_4 | CDS | 8410181 | 8410245 | 8410181 | ID=Msa0313100-mRNA-1:cds;Parent=Msa0313100-mRNA-1 |
| chr2_4 | CDS | 8410341 | 8410398 | 8410341 | ID=Msa0313100-mRNA-1:cds;Parent=Msa0313100-mRNA-1 |
| chr2_4 | CDS | 8410489 | 8410597 | 8410489 | ID=Msa0313100-mRNA-1:cds;Parent=Msa0313100-mRNA-1 |
| chr2_4 | CDS | 8411450 | 8411722 | 8411450 | ID=Msa0313100-mRNA-1:cds;Parent=Msa0313100-mRNA-1 |
| chr2_4 | CDS | 8412737 | 8412972 | 8412737 | ID=Msa0313100-mRNA-1:cds;Parent=Msa0313100-mRNA-1 |
| chr2_4 | three_prime_UTR | 8412973 | 8413394 | 8412973 | ID=Msa0313100-mRNA-1:three_prime_utr;Parent=Msa0313100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
