Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091880 | XP_003611340.1 | 86.574 | 216 | 0 | 2 | 1 | 187 | 1 | 216 | 8.34e-124 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091880 | sp|Q8VZB9|R10A1_ARATH | 76.389 | 216 | 22 | 2 | 1 | 187 | 1 | 216 | 1.31e-97 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091880 | G7JXE1 | 86.574 | 216 | 0 | 2 | 1 | 187 | 1 | 216 | 3.98e-124 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0091880 | 0.835372 | 1.743471e-56 | -8.615850e-47 |
| Msa0002790 | Msa0091880 | 0.826557 | 2.541069e-54 | -8.615850e-47 |
| Msa0003780 | Msa0091880 | 0.863401 | 2.556585e-64 | -8.615850e-47 |
| Msa0022970 | Msa0091880 | 0.857047 | 2.130042e-62 | -8.615850e-47 |
| Msa0027260 | Msa0091880 | 0.846680 | 1.865669e-59 | -8.615850e-47 |
| Msa0032260 | Msa0091880 | 0.812373 | 4.379661e-51 | -8.615850e-47 |
| Msa0040690 | Msa0091880 | 0.833575 | 4.929449e-56 | -8.615850e-47 |
| Msa0047160 | Msa0091880 | 0.835453 | 1.663500e-56 | -8.615850e-47 |
| Msa0048180 | Msa0091880 | 0.809708 | 1.655787e-50 | -8.615850e-47 |
| Msa0074030 | Msa0091880 | 0.812285 | 4.579241e-51 | -8.615850e-47 |
| Msa0074320 | Msa0091880 | 0.821870 | 3.207521e-53 | -8.615850e-47 |
| Msa0086750 | Msa0091880 | 0.821403 | 4.112623e-53 | -8.615850e-47 |
| Msa0091880 | Msa0094470 | 0.838918 | 2.161213e-57 | -8.615850e-47 |
| Msa0091880 | Msa0116130 | 0.801318 | 9.526277e-49 | -8.615850e-47 |
| Msa0091880 | Msa0116670 | 0.812611 | 3.886120e-51 | -8.615850e-47 |
| Msa0091880 | Msa0118710 | 0.801924 | 7.156111e-49 | -8.615850e-47 |
| Msa0091880 | Msa0127310 | 0.809074 | 2.264195e-50 | -8.615850e-47 |
| Msa0091880 | Msa0133540 | 0.818648 | 1.756953e-52 | -8.615850e-47 |
| Msa0091880 | Msa0138920 | 0.824871 | 6.382930e-54 | -8.615850e-47 |
| Msa0091880 | Msa0146340 | 0.867563 | 1.247800e-65 | -8.615850e-47 |
| Msa0091880 | Msa0173530 | 0.811333 | 7.379928e-51 | -8.615850e-47 |
| Msa0091880 | Msa0187690 | 0.823596 | 1.272070e-53 | -8.615850e-47 |
| Msa0091880 | Msa0187930 | 0.814801 | 1.280421e-51 | -8.615850e-47 |
| Msa0091880 | Msa0192160 | 0.814461 | 1.522612e-51 | -8.615850e-47 |
| Msa0091880 | Msa0192230 | 0.810872 | 9.289007e-51 | -8.615850e-47 |
| Msa0091880 | Msa0194540 | 0.808675 | 2.757084e-50 | -8.615850e-47 |
| Msa0091880 | Msa0244780 | 0.820612 | 6.257777e-53 | -8.615850e-47 |
| Msa0091880 | Msa0250820 | 0.822340 | 2.496228e-53 | -8.615850e-47 |
| Msa0091880 | Msa0264010 | 0.864121 | 1.526843e-64 | -8.615850e-47 |
| Msa0091880 | Msa0268130 | 0.816464 | 5.455985e-52 | -8.615850e-47 |
| Msa0091880 | Msa0289580 | 0.816519 | 5.303606e-52 | -8.615850e-47 |
| Msa0091880 | Msa0289610 | 0.825406 | 4.770067e-54 | -8.615850e-47 |
| Msa0091880 | Msa0298140 | 0.815357 | 9.638208e-52 | -8.615850e-47 |
| Msa0091880 | Msa0298990 | 0.824488 | 7.853921e-54 | -8.615850e-47 |
| Msa0091880 | Msa0313100 | 0.832533 | 8.952233e-56 | -8.615850e-47 |
| Msa0091880 | Msa0327300 | 0.831120 | 1.998303e-55 | -8.615850e-47 |
| Msa0091880 | Msa0327330 | 0.839574 | 1.460843e-57 | -8.615850e-47 |
| Msa0091880 | Msa0366890 | 0.812972 | 3.238697e-51 | -8.615850e-47 |
| Msa0091880 | Msa0385580 | 0.808699 | 2.724089e-50 | -8.615850e-47 |
| Msa0091880 | Msa0414800 | 0.800704 | 1.272153e-48 | -8.615850e-47 |
| Msa0091880 | Msa0443390 | 0.818946 | 1.503036e-52 | -8.615850e-47 |
| Msa0091880 | Msa0458060 | 0.808642 | 2.801149e-50 | -8.615850e-47 |
| Msa0091880 | Msa0526540 | 0.830051 | 3.650881e-55 | -8.615850e-47 |
| Msa0091880 | Msa0571920 | 0.813286 | 2.764166e-51 | -8.615850e-47 |
| Msa0091880 | Msa0576940 | 0.830726 | 2.496713e-55 | -8.615850e-47 |
| Msa0091880 | Msa0588360 | 0.812705 | 3.705528e-51 | -8.615850e-47 |
| Msa0091880 | Msa0603320 | 0.829196 | 5.893448e-55 | -8.615850e-47 |
| Msa0091880 | Msa0615440 | 0.806676 | 7.326631e-50 | -8.615850e-47 |
| Msa0091880 | Msa0621950 | 0.842084 | 3.208928e-58 | -8.615850e-47 |
| Msa0091880 | Msa0688850 | 0.806440 | 8.218967e-50 | -8.615850e-47 |
| Msa0091880 | Msa0698490 | 0.807641 | 4.577210e-50 | -8.615850e-47 |
| Msa0091880 | Msa0698660 | 0.811455 | 6.942650e-51 | -8.615850e-47 |
| Msa0091880 | Msa0780490 | 0.892042 | 2.284014e-74 | -8.615850e-47 |
| Msa0091880 | Msa0953310 | 0.814503 | 1.490719e-51 | -8.615850e-47 |
| Msa0091880 | Msa1006840 | 0.811050 | 8.496424e-51 | -8.615850e-47 |
| Msa0091880 | Msa1019240 | 0.834489 | 2.909576e-56 | -8.615850e-47 |
| Msa0091880 | Msa1019260 | 0.827138 | 1.846284e-54 | -8.615850e-47 |
| Msa0091880 | Msa1043690 | 0.883803 | 3.292971e-71 | -8.615850e-47 |
| Msa0091880 | Msa1081150 | 0.809563 | 1.779010e-50 | -8.615850e-47 |
| Msa0091880 | Msa1088940 | 0.851088 | 1.114352e-60 | -8.615850e-47 |
| Msa0091880 | Msa1104140 | 0.853548 | 2.222303e-61 | -8.615850e-47 |
| Msa0091880 | Msa1104210 | 0.836953 | 6.916952e-57 | -8.615850e-47 |
| Msa0091880 | Msa1126510 | 0.809040 | 2.303276e-50 | -8.615850e-47 |
| Msa0091880 | Msa1166860 | 0.818912 | 1.530482e-52 | -8.615850e-47 |
| Msa0091880 | Msa1215820 | 0.829979 | 3.801845e-55 | -8.615850e-47 |
| Msa0091880 | Msa1218140 | 0.803651 | 3.148910e-49 | -8.615850e-47 |
| Msa0091880 | Msa1257510 | 0.810851 | 9.383883e-51 | -8.615850e-47 |
| Msa0091880 | Msa1260530 | 0.817476 | 3.233350e-52 | -8.615850e-47 |
| Msa0091880 | Msa1265630 | 0.835307 | 1.810449e-56 | -8.615850e-47 |
| Msa0091880 | Msa1305050 | 0.819960 | 8.826182e-53 | -8.615850e-47 |
| Msa0091880 | Msa1343260 | 0.811057 | 8.469770e-51 | -8.615850e-47 |
| Msa0091880 | Msa1363330 | 0.831453 | 1.655384e-55 | -8.615850e-47 |
| Msa0091880 | Msa1366180 | 0.803308 | 3.708286e-49 | -8.615850e-47 |
| Msa0091880 | Msa1374120 | 0.876216 | 1.665716e-68 | -8.615850e-47 |
| Msa0091880 | Msa1379760 | 0.800346 | 1.504671e-48 | -8.615850e-47 |
| Msa0091880 | Msa1382620 | 0.836727 | 7.896645e-57 | -8.615850e-47 |
| Msa0091880 | Msa1386600 | 0.832217 | 1.072080e-55 | -8.615850e-47 |
| Msa0091880 | Msa1394290 | 0.835966 | 1.233066e-56 | -8.615850e-47 |
| Msa0091880 | Msa1399530 | 0.825430 | 4.708248e-54 | -8.615850e-47 |
| Msa0091880 | Msa1407070 | 0.836478 | 9.140600e-57 | -8.615850e-47 |
| Msa0091880 | Msa1432700 | 0.841734 | 3.970148e-58 | -8.615850e-47 |
| Msa0091880 | Msa1433310 | 0.826021 | 3.409922e-54 | -8.615850e-47 |
| Msa0091880 | Msa1448690 | 0.826617 | 2.458769e-54 | -8.615850e-47 |
| Msa0091880 | Msa1457920 | 0.806503 | 7.968910e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091880 | MtrunA17_Chr5g0399471 | 86.574 | 216 | 0 | 2 | 1 | 187 | 1 | 216 | 7.67e-128 | 358 |
| Msa0091880 | MtrunA17_Chr2g0321491 | 85.648 | 216 | 2 | 2 | 1 | 187 | 1 | 216 | 2.86e-126 | 354 |
| Msa0091880 | MtrunA17_Chr3g0113691 | 84.722 | 216 | 4 | 2 | 1 | 187 | 1 | 216 | 7.68e-125 | 350 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091880 | AT1G08360.1 | 76.389 | 216 | 22 | 2 | 1 | 187 | 1 | 216 | 1.33e-98 | 284 |
| Msa0091880 | AT2G27530.2 | 75.926 | 216 | 23 | 2 | 1 | 187 | 1 | 216 | 7.84e-98 | 282 |
| Msa0091880 | AT2G27530.1 | 75.926 | 216 | 23 | 2 | 1 | 187 | 1 | 216 | 7.84e-98 | 282 |
| Msa0091880 | AT5G22440.1 | 76.498 | 217 | 21 | 3 | 1 | 187 | 1 | 217 | 7.15e-96 | 277 |
| Msa0091880 | AT5G22440.2 | 76.498 | 217 | 21 | 3 | 1 | 187 | 1 | 217 | 7.15e-96 | 277 |
Find 46 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACACTCAGTTGTACATTT+TGG | 0.198216 | 1_2:+74066571 | None:intergenic |
| CAAACAGATTCCTCGTCTTT+TGG | 0.210825 | 1_2:-74067000 | Msa0091880:CDS |
| TTGGATAATTATAGCCTTAT+AGG | 0.228909 | 1_2:-74065894 | Msa0091880:three_prime_UTR |
| TGGATAATTATAGCCTTATA+GGG | 0.275985 | 1_2:-74065893 | Msa0091880:three_prime_UTR |
| TAAGAAACTGGTGAAGAAAT+TGG | 0.278623 | 1_2:-74067063 | Msa0091880:CDS |
| CCTTAGCCTCAAGAGATTCT+TGG | 0.279927 | 1_2:+74066691 | None:intergenic |
| AACAGCTTCAGAGGCTAAAA+AGG | 0.290643 | 1_2:+74067025 | None:intergenic |
| CAATAGTCTCCACAAATTTA+CGG | 0.320435 | 1_2:+74067992 | None:intergenic |
| AAACACAAAGGATTGAAATT+AGG | 0.320596 | 1_2:+74065868 | None:intergenic |
| GTTCTTGAATGTTGTTTCAT+TGG | 0.357804 | 1_2:-74065926 | Msa0091880:three_prime_UTR |
| TTTGGAATCACCCATGATTC+CGG | 0.376846 | 1_2:+74068023 | None:intergenic |
| AGCTGTTGGCAATGTTAGTA+TGG | 0.409393 | 1_2:-74066610 | Msa0091880:CDS |
| TTGAAATTAGGACCCCTATA+AGG | 0.433249 | 1_2:+74065880 | None:intergenic |
| AGAAGCTATTACCGGAATCA+TGG | 0.439289 | 1_2:-74068034 | Msa0091880:CDS |
| ATATTGTAGGCTGAGAAAAT+AGG | 0.447267 | 1_2:-74067131 | Msa0091880:intron |
| TGCACAACACTTTCTTGAGC+TGG | 0.451787 | 1_2:+74066640 | None:intergenic |
| TGCGAAGTGTGCTAGTACGA+TGG | 0.453998 | 1_2:+74068298 | None:intergenic |
| GGATAAACGTTTCAGCGGTT+CGG | 0.456511 | 1_2:-74067932 | Msa0091880:intron |
| GAGACTATTGAACTCCAGAT+TGG | 0.461376 | 1_2:-74067979 | Msa0091880:CDS |
| CCAAGAATCTCTTGAGGCTA+AGG | 0.480487 | 1_2:-74066691 | Msa0091880:CDS |
| GCTGTGAGAGAAGCTATTAC+CGG | 0.513912 | 1_2:-74068042 | Msa0091880:CDS |
| CTGTTTGATAACAGCTTCAG+AGG | 0.515911 | 1_2:+74067016 | None:intergenic |
| GAAAATAGGATTGGAATCGA+TGG | 0.526298 | 1_2:-74067117 | Msa0091880:CDS |
| CTTGTATCTGAAGAGCTCCA+TGG | 0.531354 | 1_2:-74066096 | Msa0091880:CDS |
| TTGTATCTGAAGAGCTCCAT+GGG | 0.538115 | 1_2:-74066095 | Msa0091880:CDS |
| GGCTAAGGTTAACGAGACTA+AGG | 0.542276 | 1_2:-74066676 | Msa0091880:CDS |
| GTAGGCTGAGAAAATAGGAT+TGG | 0.543381 | 1_2:-74067126 | Msa0091880:intron |
| GAAGCTATTACCGGAATCAT+GGG | 0.561503 | 1_2:-74068033 | Msa0091880:CDS |
| GCGAAGTGTGCTAGTACGAT+GGG | 0.562523 | 1_2:+74068299 | None:intergenic |
| TAGCCTCAAGAGATTCTTGG+TGG | 0.564785 | 1_2:+74066694 | None:intergenic |
| GTTTCATTGGTTACAAACGT+TGG | 0.565044 | 1_2:-74065913 | Msa0091880:three_prime_UTR |
| CTCAAGAAAGTGTTGTGCAT+GGG | 0.565229 | 1_2:-74066636 | Msa0091880:CDS |
| GGTTAACGAGACTAAGGCTA+TGG | 0.565310 | 1_2:-74066670 | Msa0091880:CDS |
| CATCTTCGATAGAGAAGAAG+AGG | 0.578506 | 1_2:+74068275 | None:intergenic |
| CTTCTTCTCTATCGAAGATG+AGG | 0.586051 | 1_2:-74068272 | Msa0091880:intron |
| GCTCAAGAAAGTGTTGTGCA+TGG | 0.598477 | 1_2:-74066637 | Msa0091880:CDS |
| TCTTGGTGGGAAACAAGTGT+AGG | 0.599437 | 1_2:+74066708 | None:intergenic |
| CTTGGTGGGAAACAAGTGTA+GGG | 0.600430 | 1_2:+74066709 | None:intergenic |
| AATCAAGCCTTTAAAAGACT+CGG | 0.601118 | 1_2:+74066063 | None:intergenic |
| GGATAATTATAGCCTTATAG+GGG | 0.633700 | 1_2:-74065892 | Msa0091880:three_prime_UTR |
| AGCCTCAAGAGATTCTTGGT+GGG | 0.641849 | 1_2:+74066695 | None:intergenic |
| CAAAAGGATAAACGTTTCAG+CGG | 0.645836 | 1_2:-74067937 | Msa0091880:CDS |
| TTCCCACCAAGAATCTCTTG+AGG | 0.654036 | 1_2:-74066697 | Msa0091880:CDS |
| CTAAAAGATGTAAAACACAA+AGG | 0.678049 | 1_2:+74065856 | None:intergenic |
| TTGTGCATGGGAGTAGCTGT+TGG | 0.683745 | 1_2:-74066624 | Msa0091880:CDS |
| AGACCAGGACCCAAAAGACG+AGG | 0.696429 | 1_2:+74066990 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTATCAAATCATTAT+CGG | + | chr1_2:74066362-74066381 | None:intergenic | 15.0% |
| !! | AAATATAGCACAAAAATAAA+TGG | + | chr1_2:74066524-74066543 | None:intergenic | 15.0% |
| !!! | TTTATTTTTGTGCTATATTT+TGG | - | chr1_2:74066524-74066543 | Msa0091880:intron | 15.0% |
| !!! | TATTTTGTTATTGTAATATC+TGG | - | chr1_2:74068120-74068139 | Msa0091880:intron | 15.0% |
| !!! | ATTTTGTTATTGTAATATCT+GGG | - | chr1_2:74068121-74068140 | Msa0091880:intron | 15.0% |
| !!! | TAACTGAGATTTGATTTATA+TGG | - | chr1_2:74065996-74066015 | Msa0091880:three_prime_UTR | 20.0% |
| !! | AATTCCTTATATCAAAATGT+CGG | - | chr1_2:74066439-74066458 | Msa0091880:intron | 20.0% |
| !! | TACTAACATAAAACATAAAC+AGG | + | chr1_2:74067240-74067259 | None:intergenic | 20.0% |
| !!! | TTTAAATTACCAACTGTTTT+TGG | - | chr1_2:74067282-74067301 | Msa0091880:intron | 20.0% |
| !! | AATAGATTACATTAATTCGA+TGG | + | chr1_2:74067994-74068013 | None:intergenic | 20.0% |
| ! | GCTTAAAGAAGCTTAAAAAA+AGG | + | chr1_2:74065930-74065949 | None:intergenic | 25.0% |
| !! | AAATTTACGGTTTTTCTCTT+TGG | + | chr1_2:74066127-74066146 | None:intergenic | 25.0% |
| !! | ATAAATTTTGTGACACTGTT+TGG | + | chr1_2:74066796-74066815 | None:intergenic | 25.0% |
| ! | ATTAGTATGTTGTTGAATTG+TGG | + | chr1_2:74066866-74066885 | None:intergenic | 25.0% |
| !!! | TGTCTTTCATTTAGTTTTGA+TGG | - | chr1_2:74066885-74066904 | Msa0091880:intron | 25.0% |
| ! | GCTAAACAAAAATAAGAAAC+TGG | - | chr1_2:74067054-74067073 | Msa0091880:CDS | 25.0% |
| ! | AAACATAAACAGGATATATG+TGG | + | chr1_2:74067230-74067249 | None:intergenic | 25.0% |
| ! | TGCTAAATAAAATGAAGCAA+CGG | + | chr1_2:74067320-74067339 | None:intergenic | 25.0% |
| ! | GATGTTATAGACATATACTT+GGG | + | chr1_2:74067792-74067811 | None:intergenic | 25.0% |
| ! | TGATGTTATAGACATATACT+TGG | + | chr1_2:74067793-74067812 | None:intergenic | 25.0% |
| ! | TATGGTGAAAATTGAAAACA+AGG | + | chr1_2:74067899-74067918 | None:intergenic | 25.0% |
| !! | TTTTCACCATATATGTTCTT+CGG | - | chr1_2:74067908-74067927 | Msa0091880:intron | 25.0% |
| !!! | CTGCTTTAGAATAAATAATC+TGG | - | chr1_2:74067965-74067984 | Msa0091880:CDS | 25.0% |
| ! | GAATTAATGTAATCTATTGC+TGG | - | chr1_2:74067996-74068015 | Msa0091880:CDS | 25.0% |
| !! | ATTTTGAATACAGCGAATTT+TGG | - | chr1_2:74068086-74068105 | Msa0091880:intron | 25.0% |
| !! | TCATCTTTCTACAATTTTGT+TGG | - | chr1_2:74068157-74068176 | Msa0091880:intron | 25.0% |
| !!! | TTGGATAATTATAGCCTTAT+AGG | - | chr1_2:74068235-74068254 | Msa0091880:intron | 25.0% |
| !!! | TGGATAATTATAGCCTTATA+GGG | - | chr1_2:74068236-74068255 | Msa0091880:intron | 25.0% |
| ! | AAACACAAAGGATTGAAATT+AGG | + | chr1_2:74068264-74068283 | None:intergenic | 25.0% |
| ! | CTAAAAGATGTAAAACACAA+AGG | + | chr1_2:74068276-74068295 | None:intergenic | 25.0% |
| AGAGAAAAACCGTAAATTTG+TGG | - | chr1_2:74066128-74066147 | Msa0091880:intron | 30.0% | |
| CAATAGTCTCCACAAATTTA+CGG | + | chr1_2:74066140-74066159 | None:intergenic | 30.0% | |
| !! | CATAGTTTTTCAAACCAATC+TGG | + | chr1_2:74066167-74066186 | None:intergenic | 30.0% |
| GAAAAACTATGATCCTCAAA+AGG | - | chr1_2:74066176-74066195 | Msa0091880:intron | 30.0% | |
| ! | CAAATTTTCATCTTTGGTCT+CGG | + | chr1_2:74066240-74066259 | None:intergenic | 30.0% |
| ! | AGCATGCAAATTTTCATCTT+TGG | + | chr1_2:74066246-74066265 | None:intergenic | 30.0% |
| AAGATGAAAATTTGCATGCT+TGG | - | chr1_2:74066246-74066265 | Msa0091880:intron | 30.0% | |
| TGTTGAATTGTGGTTACTAA+GGG | + | chr1_2:74066856-74066875 | None:intergenic | 30.0% | |
| TTGTTGAATTGTGGTTACTA+AGG | + | chr1_2:74066857-74066876 | None:intergenic | 30.0% | |
| CACTCTAATATGCATATTGT+AGG | - | chr1_2:74066985-74067004 | Msa0091880:intron | 30.0% | |
| ATATTGTAGGCTGAGAAAAT+AGG | - | chr1_2:74066998-74067017 | Msa0091880:CDS | 30.0% | |
| TAAGAAACTGGTGAAGAAAT+TGG | - | chr1_2:74067066-74067085 | Msa0091880:CDS | 30.0% | |
| !! | CTTCATTTTATTTAGCAACC+AGG | - | chr1_2:74067323-74067342 | Msa0091880:intron | 30.0% |
| ! | TAACACTCAGTTGTACATTT+TGG | + | chr1_2:74067561-74067580 | None:intergenic | 30.0% |
| ! | ATTTTACTCGATGTTATGAG+TGG | + | chr1_2:74067631-74067650 | None:intergenic | 30.0% |
| ! | CTTTGTTACCTTCTATTTTG+TGG | - | chr1_2:74067656-74067675 | Msa0091880:intron | 30.0% |
| ATTGGATGATGAGCAATAAT+AGG | - | chr1_2:74067691-74067710 | Msa0091880:intron | 30.0% | |
| TTATAGACATATACTTGGGA+TGG | + | chr1_2:74067788-74067807 | None:intergenic | 30.0% | |
| ! | AATCTTACCGAGTCTTTTAA+AGG | - | chr1_2:74068059-74068078 | Msa0091880:CDS | 30.0% |
| ! | AATCAAGCCTTTAAAAGACT+CGG | + | chr1_2:74068069-74068088 | None:intergenic | 30.0% |
| !! | GTTCTTGAATGTTGTTTCAT+TGG | - | chr1_2:74068203-74068222 | Msa0091880:intron | 30.0% |
| !! | GGATAATTATAGCCTTATAG+GGG | - | chr1_2:74068237-74068256 | Msa0091880:intron | 30.0% |
| GACAAGTAGAATAAGAGAGA+GGG | + | chr1_2:74065896-74065915 | None:intergenic | 35.0% | |
| AGACAAGTAGAATAAGAGAG+AGG | + | chr1_2:74065897-74065916 | None:intergenic | 35.0% | |
| ! | CTGAAACGTTTATCCTTTTG+AGG | + | chr1_2:74066192-74066211 | None:intergenic | 35.0% |
| CAAAAGGATAAACGTTTCAG+CGG | - | chr1_2:74066192-74066211 | Msa0091880:intron | 35.0% | |
| TATTACCTCCTCAACATGTT+GGG | + | chr1_2:74066277-74066296 | None:intergenic | 35.0% | |
| TTATTACCTCCTCAACATGT+TGG | + | chr1_2:74066278-74066297 | None:intergenic | 35.0% | |
| !!! | AGCACCGACATTTTGATATA+AGG | + | chr1_2:74066446-74066465 | None:intergenic | 35.0% |
| CAATTCAGCAATAACTACCT+CGG | + | chr1_2:74066470-74066489 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATAAGCTATCT+TGG | - | chr1_2:74066702-74066721 | Msa0091880:CDS | 35.0% |
| !!! | GATGGTATTGATTTTGCATC+CGG | - | chr1_2:74066903-74066922 | Msa0091880:intron | 35.0% |
| CAAAAAAATATCCCATGCTC+CGG | + | chr1_2:74066925-74066944 | None:intergenic | 35.0% | |
| GAAAATAGGATTGGAATCGA+TGG | - | chr1_2:74067012-74067031 | Msa0091880:CDS | 35.0% | |
| ! | AAACAGATTCCTCGTCTTTT+GGG | - | chr1_2:74067130-74067149 | Msa0091880:intron | 35.0% |
| GAGTATGAACCAAAAACAGT+TGG | + | chr1_2:74067294-74067313 | None:intergenic | 35.0% | |
| GGCAAACTTTCAAATAAACC+TGG | + | chr1_2:74067344-74067363 | None:intergenic | 35.0% | |
| AGCTCAAGCAACAATTGAAA+TGG | + | chr1_2:74067365-74067384 | None:intergenic | 35.0% | |
| ! | AATTGTTGCTTGAGCTGATT+TGG | - | chr1_2:74067369-74067388 | Msa0091880:intron | 35.0% |
| !!! | GCTGATTTGGATATTTTGCA+TGG | - | chr1_2:74067382-74067401 | Msa0091880:intron | 35.0% |
| ! | GATATTTTGCATGGCTTTTC+AGG | - | chr1_2:74067391-74067410 | Msa0091880:intron | 35.0% |
| TGTCCTTGTTGAAAAAGAAC+TGG | - | chr1_2:74067590-74067609 | Msa0091880:intron | 35.0% | |
| !!! | TTGCCAGTTCTTTTTCAACA+AGG | + | chr1_2:74067596-74067615 | None:intergenic | 35.0% |
| CATCATCACCACAAAATAGA+AGG | + | chr1_2:74067667-74067686 | None:intergenic | 35.0% | |
| ! | TTGTGGTGATGATGAATCAT+TGG | - | chr1_2:74067673-74067692 | Msa0091880:intron | 35.0% |
| AAGTAATAGTCCGACATTAG+AGG | - | chr1_2:74067747-74067766 | Msa0091880:intron | 35.0% | |
| !! | TGTAATCTATTGCTGGTTTC+AGG | - | chr1_2:74068003-74068022 | Msa0091880:CDS | 35.0% |
| ! | GTTTCATTGGTTACAAACGT+TGG | - | chr1_2:74068216-74068235 | Msa0091880:intron | 35.0% |
| TTGAAATTAGGACCCCTATA+AGG | + | chr1_2:74068252-74068271 | None:intergenic | 35.0% | |
| CATCTTCGATAGAGAAGAAG+AGG | + | chr1_2:74065857-74065876 | None:intergenic | 40.0% | |
| CTTCTTCTCTATCGAAGATG+AGG | - | chr1_2:74065857-74065876 | Msa0091880:three_prime_UTR | 40.0% | |
| AGAAGCTATTACCGGAATCA+TGG | - | chr1_2:74066095-74066114 | Msa0091880:CDS | 40.0% | |
| GAAGCTATTACCGGAATCAT+GGG | - | chr1_2:74066096-74066115 | Msa0091880:CDS | 40.0% | |
| ! | TTTGGAATCACCCATGATTC+CGG | + | chr1_2:74066109-74066128 | None:intergenic | 40.0% |
| GAGACTATTGAACTCCAGAT+TGG | - | chr1_2:74066150-74066169 | Msa0091880:intron | 40.0% | |
| GTTGCACTCAAACTGTTTGT+TGG | - | chr1_2:74066304-74066323 | Msa0091880:intron | 40.0% | |
| ACAAACACGAAACACTGACA+CGG | - | chr1_2:74066331-74066350 | Msa0091880:intron | 40.0% | |
| CACTCTATCAAACACGTGTT+CGG | + | chr1_2:74066416-74066435 | None:intergenic | 40.0% | |
| TGTGTCATCTGACTCATATC+AGG | + | chr1_2:74066575-74066594 | None:intergenic | 40.0% | |
| GATACTGTTGTATGCGACTT+AGG | - | chr1_2:74066597-74066616 | Msa0091880:CDS | 40.0% | |
| GCTTATCTGAGCTTATCTAC+TGG | + | chr1_2:74066820-74066839 | None:intergenic | 40.0% | |
| GTAGGCTGAGAAAATAGGAT+TGG | - | chr1_2:74067003-74067022 | Msa0091880:CDS | 40.0% | |
| AACAGCTTCAGAGGCTAAAA+AGG | + | chr1_2:74067107-74067126 | None:intergenic | 40.0% | |
| ! | CTGTTTGATAACAGCTTCAG+AGG | + | chr1_2:74067116-74067135 | None:intergenic | 40.0% |
| ! | CAAACAGATTCCTCGTCTTT+TGG | - | chr1_2:74067129-74067148 | Msa0091880:intron | 40.0% |
| ! | GCAGGCATGTGTTTTCTTTT+GGG | - | chr1_2:74067169-74067188 | Msa0091880:intron | 40.0% |
| ! | GTGTTTTCTTTTGGGCGTTT+TGG | - | chr1_2:74067177-74067196 | Msa0091880:intron | 40.0% |
| !! | CTCAAGAAAGTGTTGTGCAT+GGG | - | chr1_2:74067493-74067512 | Msa0091880:intron | 40.0% |
| AGCTGTTGGCAATGTTAGTA+TGG | - | chr1_2:74067519-74067538 | Msa0091880:intron | 40.0% | |
| !!! | TCTTTTTCAACAAGGACACG+AGG | + | chr1_2:74067588-74067607 | None:intergenic | 40.0% |
| GAAATCCAGTCCTCTAATGT+CGG | + | chr1_2:74067760-74067779 | None:intergenic | 40.0% | |
| TCACCATATATGTTCTTCGG+TGG | - | chr1_2:74067911-74067930 | Msa0091880:intron | 40.0% | |
| !! | TCTATTGCTGGTTTCAGGTT+AGG | - | chr1_2:74068008-74068027 | Msa0091880:CDS | 40.0% |
| TTGTATCTGAAGAGCTCCAT+GGG | - | chr1_2:74068034-74068053 | Msa0091880:CDS | 40.0% | |
| GCTGTGAGAGAAGCTATTAC+CGG | - | chr1_2:74066087-74066106 | Msa0091880:CDS | 45.0% | |
| GGATAAACGTTTCAGCGGTT+CGG | - | chr1_2:74066197-74066216 | Msa0091880:intron | 45.0% | |
| ATCTTTGGTCTCGGAATGTG+AGG | + | chr1_2:74066231-74066250 | None:intergenic | 45.0% | |
| CGAACACGTGTTTGATAGAG+TGG | - | chr1_2:74066414-74066433 | Msa0091880:intron | 45.0% | |
| ! | TTGATTTTGCATCCGGAGCA+TGG | - | chr1_2:74066910-74066929 | Msa0091880:intron | 45.0% |
| ! | TGATTTTGCATCCGGAGCAT+GGG | - | chr1_2:74066911-74066930 | Msa0091880:intron | 45.0% |
| CTTCAGAGGCTAAAAAGGCA+TGG | + | chr1_2:74067102-74067121 | None:intergenic | 45.0% | |
| ! | GGCAGGCATGTGTTTTCTTT+TGG | - | chr1_2:74067168-74067187 | Msa0091880:intron | 45.0% |
| CTTGGTGGGAAACAAGTGTA+GGG | + | chr1_2:74067423-74067442 | None:intergenic | 45.0% | |
| TCTTGGTGGGAAACAAGTGT+AGG | + | chr1_2:74067424-74067443 | None:intergenic | 45.0% | |
| TTCCCACCAAGAATCTCTTG+AGG | - | chr1_2:74067432-74067451 | Msa0091880:intron | 45.0% | |
| AGCCTCAAGAGATTCTTGGT+GGG | + | chr1_2:74067437-74067456 | None:intergenic | 45.0% | |
| TAGCCTCAAGAGATTCTTGG+TGG | + | chr1_2:74067438-74067457 | None:intergenic | 45.0% | |
| CCTTAGCCTCAAGAGATTCT+TGG | + | chr1_2:74067441-74067460 | None:intergenic | 45.0% | |
| CCAAGAATCTCTTGAGGCTA+AGG | - | chr1_2:74067438-74067457 | Msa0091880:intron | 45.0% | |
| GGCTAAGGTTAACGAGACTA+AGG | - | chr1_2:74067453-74067472 | Msa0091880:intron | 45.0% | |
| GGTTAACGAGACTAAGGCTA+TGG | - | chr1_2:74067459-74067478 | Msa0091880:intron | 45.0% | |
| TGCACAACACTTTCTTGAGC+TGG | + | chr1_2:74067492-74067511 | None:intergenic | 45.0% | |
| !! | GCTCAAGAAAGTGTTGTGCA+TGG | - | chr1_2:74067492-74067511 | Msa0091880:intron | 45.0% |
| ATAGTCCGACATTAGAGGAC+TGG | - | chr1_2:74067752-74067771 | Msa0091880:intron | 45.0% | |
| GACATCTTCACAAGGTTGTG+AGG | + | chr1_2:74067870-74067889 | None:intergenic | 45.0% | |
| GCACCACCGAAGAACATATA+TGG | + | chr1_2:74067917-74067936 | None:intergenic | 45.0% | |
| CTTGTATCTGAAGAGCTCCA+TGG | - | chr1_2:74068033-74068052 | Msa0091880:CDS | 45.0% | |
| !! | GACTCGGTAAGATTTTCCCA+TGG | + | chr1_2:74068053-74068072 | None:intergenic | 45.0% |
| GCGAAGTGTGCTAGTACGAT+GGG | + | chr1_2:74065833-74065852 | None:intergenic | 50.0% | |
| TGCGAAGTGTGCTAGTACGA+TGG | + | chr1_2:74065834-74065853 | None:intergenic | 50.0% | |
| ! | TGGTGATGCCCAACATGTTG+AGG | - | chr1_2:74066266-74066285 | Msa0091880:intron | 50.0% |
| TGATGCCCAACATGTTGAGG+AGG | - | chr1_2:74066269-74066288 | Msa0091880:intron | 50.0% | |
| !! | TCAAAATGTCGGTGCTACCG+AGG | - | chr1_2:74066450-74066469 | Msa0091880:intron | 50.0% |
| !! | ATTCCTCGTCTTTTGGGTCC+TGG | - | chr1_2:74067136-74067155 | Msa0091880:intron | 50.0% |
| TTTGGGTCCTGGTCTCAACA+AGG | - | chr1_2:74067147-74067166 | Msa0091880:intron | 50.0% | |
| TTGTGCATGGGAGTAGCTGT+TGG | - | chr1_2:74067505-74067524 | Msa0091880:intron | 50.0% | |
| GGTACTGCGACATCTTCACA+AGG | + | chr1_2:74067878-74067897 | None:intergenic | 50.0% | |
| AGACCAGGACCCAAAAGACG+AGG | + | chr1_2:74067142-74067161 | None:intergenic | 55.0% | |
| ! | ATGCCTGCCTTGTTGAGACC+AGG | + | chr1_2:74067157-74067176 | None:intergenic | 55.0% |
| GGTCCTGGTCTCAACAAGGC+AGG | - | chr1_2:74067151-74067170 | Msa0091880:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 74065799 | 74068352 | 74065799 | ID=Msa0091880;Name=Msa0091880 |
| chr1_2 | mRNA | 74065799 | 74068352 | 74065799 | ID=Msa0091880-mRNA-1;Parent=Msa0091880;Name=Msa0091880-mRNA-1;_AED=0.06;_eAED=0.06;_QI=75|0.5|0.6|1|0.75|0.6|5|274|187 |
| chr1_2 | exon | 74065799 | 74066126 | 74065799 | ID=Msa0091880-mRNA-1:exon:26118;Parent=Msa0091880-mRNA-1 |
| chr1_2 | exon | 74066533 | 74066738 | 74066533 | ID=Msa0091880-mRNA-1:exon:26117;Parent=Msa0091880-mRNA-1 |
| chr1_2 | exon | 74066994 | 74067144 | 74066994 | ID=Msa0091880-mRNA-1:exon:26116;Parent=Msa0091880-mRNA-1 |
| chr1_2 | exon | 74067933 | 74068080 | 74067933 | ID=Msa0091880-mRNA-1:exon:26115;Parent=Msa0091880-mRNA-1 |
| chr1_2 | exon | 74068273 | 74068352 | 74068273 | ID=Msa0091880-mRNA-1:exon:26114;Parent=Msa0091880-mRNA-1 |
| chr1_2 | five_prime_UTR | 74068278 | 74068352 | 74068278 | ID=Msa0091880-mRNA-1:five_prime_utr;Parent=Msa0091880-mRNA-1 |
| chr1_2 | CDS | 74068273 | 74068277 | 74068273 | ID=Msa0091880-mRNA-1:cds;Parent=Msa0091880-mRNA-1 |
| chr1_2 | CDS | 74067933 | 74068080 | 74067933 | ID=Msa0091880-mRNA-1:cds;Parent=Msa0091880-mRNA-1 |
| chr1_2 | CDS | 74066994 | 74067144 | 74066994 | ID=Msa0091880-mRNA-1:cds;Parent=Msa0091880-mRNA-1 |
| chr1_2 | CDS | 74066533 | 74066738 | 74066533 | ID=Msa0091880-mRNA-1:cds;Parent=Msa0091880-mRNA-1 |
| chr1_2 | CDS | 74066073 | 74066126 | 74066073 | ID=Msa0091880-mRNA-1:cds;Parent=Msa0091880-mRNA-1 |
| chr1_2 | three_prime_UTR | 74065799 | 74066072 | 74065799 | ID=Msa0091880-mRNA-1:three_prime_utr;Parent=Msa0091880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
