AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0196090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0196090 MtrunA17_Chr2g0324581 87.500 64 8 0 6 69 239 302 4.02e-31 113
Msa0196090 MtrunA17_Chr2g0324591 79.688 64 13 0 6 69 257 320 1.90e-26 100
Msa0196090 MtrunA17_Chr2g0324661 56.923 65 23 3 6 68 212 273 1.84e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 132 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTTCTTGCTTAAATTTA+TGG 0.097898 2_1:+13125589 Msa0196090:three_prime_UTR
GAAAGCAACACCTAGATTTC+AGG 0.202302 2_1:-13125777 None:intergenic
ACAATTTCAAATTCAATATA+TGG 0.204005 2_1:+13123078 Msa0196090:five_prime_UTR
CATTGTCTTGACTGCTTAAT+AGG 0.204873 2_1:-13125090 None:intergenic
AATTGTAATTTGTGCATTAT+TGG 0.225543 2_1:+13127049 Msa0196090:three_prime_UTR
GTTCTTGATCTTGGATAAAT+AGG 0.228031 2_1:+13126149 Msa0196090:three_prime_UTR
GACAGAGAATCATAAGAAAA+AGG 0.233023 2_1:+13123407 Msa0196090:CDS
TTTACTGAGGGTTGGTTTCT+AGG 0.238681 2_1:+13125418 Msa0196090:three_prime_UTR
TGCATTATTGGTTCCTTCAT+TGG 0.240192 2_1:+13127061 Msa0196090:three_prime_UTR
CTCTATCAGTGGCACATATT+TGG 0.240256 2_1:+13125666 Msa0196090:three_prime_UTR
TTAAGTTCAGTTATGGTAAA+TGG 0.240865 2_1:+13125844 Msa0196090:three_prime_UTR
TATTTGACATGACTGCTATT+TGG 0.243259 2_1:+13125978 Msa0196090:three_prime_UTR
ATTAGAAGCAAAGGAAATTA+AGG 0.243657 2_1:+13121433 Msa0196090:five_prime_UTR
TTTCAAATGTTTGTGCAATA+TGG 0.251188 2_1:+13127186 Msa0196090:three_prime_UTR
TTCCTTCATTGGTTCCAATT+AGG 0.271932 2_1:+13127072 Msa0196090:three_prime_UTR
ATAATTAAGATGAACCTAAT+TGG 0.284724 2_1:-13127086 None:intergenic
TAGGAAGTTCTTCAAGCCTT+TGG 0.295788 2_1:-13125071 None:intergenic
ATCTATAACTAACCTTGATT+TGG 0.296096 2_1:-13123174 None:intergenic
ACATTCAATCCAAAGAATTA+TGG 0.303975 2_1:-13121994 None:intergenic
AAATGATGCCGCTGAGATTA+AGG 0.307981 2_1:+13126267 Msa0196090:three_prime_UTR
GGTTTGGTTCCATAATTCTT+TGG 0.308785 2_1:+13121985 Msa0196090:five_prime_UTR
TTCTTTGGATTGAATGTTAG+AGG 0.319498 2_1:+13122000 Msa0196090:five_prime_UTR
GAAAACTTGGAACAGATTAG+AGG 0.320467 2_1:+13123010 Msa0196090:intron
GAGGAAGAAACAAGAAGAAT+TGG 0.332205 2_1:+13121620 Msa0196090:five_prime_UTR
TTGTTGTTCTTAGAATAAAA+AGG 0.336964 2_1:+13121784 Msa0196090:intron
GCATATTGAGTTCTTGATCT+TGG 0.338231 2_1:+13126140 Msa0196090:three_prime_UTR
CAATATATGGAAAGAGCTTC+TGG 0.347044 2_1:+13123091 Msa0196090:five_prime_UTR
AAAGAACTAGAAGACATAAA+TGG 0.349189 2_1:+13123357 Msa0196090:CDS
TCTTAACATGGCTTAAGCTT+TGG 0.367884 2_1:+13124899 Msa0196090:CDS
AGGAAGTTCTTCAAGCCTTT+GGG 0.377035 2_1:-13125070 None:intergenic
GGTTGGACTGAGGCAGGTTT+CGG 0.378173 2_1:+13126978 Msa0196090:three_prime_UTR
GTAGTCTTCTTTCAAATGTA+TGG 0.378293 2_1:-13126681 None:intergenic
CATAATCAAACCTGAAATCT+AGG 0.381874 2_1:+13125767 Msa0196090:three_prime_UTR
TGACATAATTATAGCAGAAA+TGG 0.387629 2_1:-13125881 None:intergenic
TTTCGGCAAGATGGGTGTTT+CGG 0.388400 2_1:+13126995 Msa0196090:three_prime_UTR
CCTTTGCTTCTAATGTAAAT+CGG 0.392353 2_1:-13121424 None:intergenic
CACACCATGTCTTACTTTGG+TGG 0.393906 2_1:-13123334 None:intergenic
TTACTGAGGGTTGGTTTCTA+GGG 0.395235 2_1:+13125419 Msa0196090:three_prime_UTR
GCGGGAGAGGAGAGGGTCGC+CGG 0.399149 2_1:+13121350 Msa0196090:five_prime_UTR
AGAGGGTCGCCGGGAGAGAA+AGG 0.399773 2_1:+13121360 Msa0196090:five_prime_UTR
TTTCTTCAAGGATTCATAGT+TGG 0.401438 2_1:-13123140 None:intergenic
AATAAATATTAAACAACATA+TGG 0.403292 2_1:-13125626 None:intergenic
GAGAGAGAGGGTCGCGGGAG+AGG 0.406651 2_1:+13121337 Msa0196090:five_prime_UTR
TGTTGCAGGAAACATTGGTT+TGG 0.423084 2_1:+13121969 Msa0196090:intron
CGACTAATTAGAATCATTCA+AGG 0.432404 2_1:-13126184 None:intergenic
TTTCACACCATGTCTTACTT+TGG 0.439427 2_1:-13123337 None:intergenic
ACCGTCAATACCTAAGGCTT+TGG 0.443243 2_1:+13125125 Msa0196090:three_prime_UTR
CAACCCGCCATAGTGTAGTT+GGG 0.455307 2_1:-13125809 None:intergenic
TTAGGTATTGACGGTGTCAC+TGG 0.459042 2_1:-13125117 None:intergenic
TACACTGGTTGGACTGAGGC+AGG 0.459434 2_1:+13126972 Msa0196090:three_prime_UTR
AGTTTACTCACCAAAGCCTT+AGG 0.461179 2_1:-13125135 None:intergenic
CAAATATGTGCCACTGATAG+AGG 0.468510 2_1:-13125665 None:intergenic
AACATTGCTACTAATGAGAA+AGG 0.470350 2_1:-13126115 None:intergenic
CGGGAGAGGAGAGGGTCGCC+GGG 0.471331 2_1:+13121351 Msa0196090:five_prime_UTR
GGAGATTTAAGAAGATATGA+AGG 0.474849 2_1:+13121805 Msa0196090:five_prime_UTR
CTTTGATAAATACTTTAGAA+AGG 0.476087 2_1:+13127157 Msa0196090:three_prime_UTR
GAGGGTCGCGGGAGAGGAGA+GGG 0.478831 2_1:+13121343 Msa0196090:five_prime_UTR
ATCGATGCTTTACTGAGGGT+TGG 0.482057 2_1:+13125410 Msa0196090:three_prime_UTR
ACAACCCGCCATAGTGTAGT+TGG 0.483416 2_1:-13125810 None:intergenic
GAGGGTCGCCGGGAGAGAAA+GGG 0.483705 2_1:+13121361 Msa0196090:five_prime_UTR
GAAGAAACAAGAAGAATTGG+AGG 0.484939 2_1:+13121623 Msa0196090:five_prime_UTR
TGAGGCAGGTTTCGGCAAGA+TGG 0.486601 2_1:+13126986 Msa0196090:three_prime_UTR
TGAAAGAGAGAGAGGGTCGC+GGG 0.486825 2_1:+13121332 Msa0196090:five_prime_UTR
AACTACACTATGGCGGGTTG+TGG 0.487324 2_1:+13125812 Msa0196090:three_prime_UTR
AACCTAATTGGAACCAATGA+AGG 0.488927 2_1:-13127074 None:intergenic
AGGCACGCAGTCTGTTACAC+TGG 0.491245 2_1:+13126957 Msa0196090:three_prime_UTR
GGGGCTGGGTTTGCAATTGG+AGG 0.496777 2_1:+13121601 Msa0196090:five_prime_UTR
AGTAGTCCCCAACTACACTA+TGG 0.502210 2_1:+13125802 Msa0196090:three_prime_UTR
CTGAAAGAGAGAGAGGGTCG+CGG 0.505347 2_1:+13121331 Msa0196090:five_prime_UTR
CATGGCTTAAGCTTTGGTGC+AGG 0.507969 2_1:+13124905 Msa0196090:CDS
CAGACTGCGTGCCTCTTCAA+TGG 0.510928 2_1:-13126948 None:intergenic
GTACTTTCAGGCATATCAGT+TGG 0.514336 2_1:+13124876 Msa0196090:intron
ATCGGTGCAGATCGGAGTGT+TGG 0.520474 2_1:-13121406 None:intergenic
ACTTCTGTTGCAGGAAACAT+TGG 0.523691 2_1:+13121964 Msa0196090:intron
AGAGGGTCGCGGGAGAGGAG+AGG 0.525300 2_1:+13121342 Msa0196090:five_prime_UTR
ACAAGGACAGCATGTGCTGC+AGG 0.526864 2_1:+13126878 Msa0196090:three_prime_UTR
TCGATCTCAGTCAATTCCTC+AGG 0.527039 2_1:+13124935 Msa0196090:CDS
ACCAAAGCCTTAGGTATTGA+CGG 0.527928 2_1:-13125126 None:intergenic
CCGATTTACATTAGAAGCAA+AGG 0.530720 2_1:+13121424 Msa0196090:five_prime_UTR
TGAAAAGAGAAGAGAATGGA+TGG 0.533021 2_1:+13123305 Msa0196090:CDS
GGCGGCGACCCTTTCTCTCC+CGG 0.533339 2_1:-13121369 None:intergenic
GAATGAAAACTTAAGCAACT+TGG 0.534817 2_1:+13126037 Msa0196090:three_prime_UTR
ACTACGTCTTGGTGGTCCAT+TGG 0.537769 2_1:+13126699 Msa0196090:three_prime_UTR
GAGGCAGGTTTCGGCAAGAT+GGG 0.538244 2_1:+13126987 Msa0196090:three_prime_UTR
TGCAGTCAATTCTCTGTACA+AGG 0.540808 2_1:+13126861 Msa0196090:intron
GTGTTGGACGGCGAGGTCGA+CGG 0.546335 2_1:-13121390 None:intergenic
GAAAGAAGACTACGTCTTGG+TGG 0.549879 2_1:+13126691 Msa0196090:three_prime_UTR
ACATTGCTACTAATGAGAAA+GGG 0.551989 2_1:-13126114 None:intergenic
AATTATAAATGACCAAATCA+AGG 0.553980 2_1:+13123162 Msa0196090:exon
TACACTATGGCGGGTTGTGG+TGG 0.559811 2_1:+13125815 Msa0196090:three_prime_UTR
TGTAATTGCGTCATATAATG+AGG 0.564697 2_1:+13125912 Msa0196090:three_prime_UTR
TAAAATCGATGCTTTACTGA+GGG 0.567843 2_1:+13125406 Msa0196090:three_prime_UTR
CTGAGGGTTGGTTTCTAGGG+AGG 0.572000 2_1:+13125422 Msa0196090:three_prime_UTR
CATATCAGTTGGTCTTAACA+TGG 0.576117 2_1:+13124887 Msa0196090:CDS
AAAACTTGGAACAGATTAGA+GGG 0.578050 2_1:+13123011 Msa0196090:intron
AGAAGAGCTGAAAGAGAGAG+AGG 0.580586 2_1:+13121324 Msa0196090:five_prime_UTR
AGTATTTATCAAAGCATCAA+AGG 0.582726 2_1:-13127148 None:intergenic
AGAAAGAGCAACCATTGAAG+AGG 0.585732 2_1:+13126937 Msa0196090:three_prime_UTR
AGTGACACCGTCAATACCTA+AGG 0.590553 2_1:+13125119 Msa0196090:exon
TTTGAAAGAAGACTACGTCT+TGG 0.593120 2_1:+13126688 Msa0196090:three_prime_UTR
ACGCAGTCTGTTACACTGGT+TGG 0.593852 2_1:+13126961 Msa0196090:three_prime_UTR
ATAATTATAGCAGAAATGGC+AGG 0.601487 2_1:-13125877 None:intergenic
GTCCCCAACTACACTATGGC+GGG 0.602647 2_1:+13125806 Msa0196090:three_prime_UTR
AACCCGCCATAGTGTAGTTG+GGG 0.604206 2_1:-13125808 None:intergenic
CTATTAAGCAGTCAAGACAA+TGG 0.604644 2_1:+13125091 Msa0196090:CDS
AAAAGGGTGAAGCATATCAA+AGG 0.605182 2_1:+13123424 Msa0196090:CDS
TGATAGAGGGTGGCTAAGAG+AGG 0.607815 2_1:-13125651 None:intergenic
TAATGTAAATCGGTGCAGAT+CGG 0.608137 2_1:-13121414 None:intergenic
TCTTGGTGGTCCATTGGTGA+AGG 0.608383 2_1:+13126705 Msa0196090:three_prime_UTR
GGAATTGACTGAGATCGAGA+TGG 0.610281 2_1:-13124930 None:intergenic
GATCGGAGTGTTGGACGGCG+AGG 0.614383 2_1:-13121397 None:intergenic
TCTTAGCCACCCTCTATCAG+TGG 0.615304 2_1:+13125655 Msa0196090:three_prime_UTR
AGTTCAGTTATGGTAAATGG+CGG 0.615606 2_1:+13125847 Msa0196090:three_prime_UTR
AGGTTTCGGTCAAAACCCAA+AGG 0.617561 2_1:+13125055 Msa0196090:intron
GAAGGAAAACATCGCAACCA+TGG 0.618992 2_1:+13126723 Msa0196090:three_prime_UTR
TCGCAACCATGGTTCTTGAG+AGG 0.620117 2_1:+13126734 Msa0196090:three_prime_UTR
GTGCAGATCGGAGTGTTGGA+CGG 0.620791 2_1:-13121402 None:intergenic
GATAGAGGGTGGCTAAGAGA+GGG 0.629502 2_1:-13125650 None:intergenic
GAAGAGCTGAAAGAGAGAGA+GGG 0.635681 2_1:+13121325 Msa0196090:five_prime_UTR
TTAAAATCGATGCTTTACTG+AGG 0.636488 2_1:+13125405 Msa0196090:three_prime_UTR
CTCTAACCTCTCAAGAACCA+TGG 0.655626 2_1:-13126740 None:intergenic
AAACTTAATTGAAAGTATGG+GGG 0.662816 2_1:+13121582 Msa0196090:intron
CAAGGACAGCATGTGCTGCA+GGG 0.666583 2_1:+13126879 Msa0196090:three_prime_UTR
AAATATGTGCCACTGATAGA+GGG 0.668149 2_1:-13125664 None:intergenic
CTGTTACACTGGTTGGACTG+AGG 0.672284 2_1:+13126968 Msa0196090:three_prime_UTR
TTGGACGGCGAGGTCGACGG+CGG 0.673722 2_1:-13121387 None:intergenic
AGTCCCCAACTACACTATGG+CGG 0.686861 2_1:+13125805 Msa0196090:three_prime_UTR
TCAGCTTACCTTAATCTCAG+CGG 0.688887 2_1:-13126275 None:intergenic
TATGTGCCACTGATAGAGGG+TGG 0.701153 2_1:-13125661 None:intergenic
TGTGCCACCAAAGTAAGACA+TGG 0.701959 2_1:+13123330 Msa0196090:CDS
TACTGCGTGTATAATGCATG+TGG 0.708206 2_1:+13125511 Msa0196090:three_prime_UTR
GGACAGCATGTGCTGCAGGG+TGG 0.776953 2_1:+13126882 Msa0196090:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATAATTATGATCATTT+TGG + chr2_1:13122448-13122467 Msa0196090:intron 10.0%
!!! TTTGATTATTGATTTTTTAT+CGG + chr2_1:13123778-13123797 Msa0196090:intron 10.0%
!!! TTGAATATTTTTTTTTTGAA+TGG + chr2_1:13123876-13123895 Msa0196090:intron 10.0%
!!! ATGAAGATAATTTTTTTTTT+TGG + chr2_1:13124047-13124066 Msa0196090:intron 10.0%
!!! TATCATTCTTTTAAATATAA+TGG + chr2_1:13124987-13125006 Msa0196090:intron 10.0%
!! AATAAATATTAAACAACATA+TGG - chr2_1:13125629-13125648 None:intergenic 10.0%
!!! TTTTTTTTTTTTAAGTTTGT+TGG - chr2_1:13126014-13126033 None:intergenic 10.0%
!! TTCATTAAGAAATTGAAATT+GGG - chr2_1:13121520-13121539 None:intergenic 15.0%
!! AATTTCAATTTCTTAATGAA+GGG + chr2_1:13121520-13121539 Msa0196090:intron 15.0%
!!! AATTTAATGTTGATGATAAT+TGG + chr2_1:13121848-13121867 Msa0196090:intron 15.0%
!!! TTAAATGAGGTTTTATTATT+TGG + chr2_1:13122680-13122699 Msa0196090:intron 15.0%
!!! TTCTGAATAATATTTGATTT+TGG + chr2_1:13122888-13122907 Msa0196090:intron 15.0%
!!! ATAATATTTGATTTTGGTTT+TGG + chr2_1:13122894-13122913 Msa0196090:intron 15.0%
!! ACAATTTCAAATTCAATATA+TGG + chr2_1:13123078-13123097 Msa0196090:five_prime_UTR 15.0%
!! AATCAAACAAATTGATATTA+AGG - chr2_1:13123728-13123747 None:intergenic 15.0%
!!! ATATTTTGTTAATTGCTATA+TGG + chr2_1:13124345-13124364 Msa0196090:intron 15.0%
!!! ATATCTGAAATCATAATTTT+TGG - chr2_1:13124464-13124483 None:intergenic 15.0%
!!! TACATTTGATTTTATTCTTT+AGG + chr2_1:13124690-13124709 Msa0196090:intron 15.0%
!!! TAATTTTAAATTTATGTGCA+GGG - chr2_1:13124837-13124856 None:intergenic 15.0%
!! AATGAAACAATAAAAAAAGA+GGG - chr2_1:13125703-13125722 None:intergenic 15.0%
!! TAATGAAACAATAAAAAAAG+AGG - chr2_1:13125704-13125723 None:intergenic 15.0%
!!! CTTTTTTTATTCTAAATTTG+TGG - chr2_1:13126498-13126517 None:intergenic 15.0%
!! TAAAACAAAATTAATCTTGT+AGG - chr2_1:13126584-13126603 None:intergenic 15.0%
!! TCATTAAGAAATTGAAATTG+GGG - chr2_1:13121519-13121538 None:intergenic 20.0%
!! CTTCATTAAGAAATTGAAAT+TGG - chr2_1:13121521-13121540 None:intergenic 20.0%
!! CAATTTCAATTTCTTAATGA+AGG + chr2_1:13121519-13121538 Msa0196090:intron 20.0%
!! AGAAAACTTAATTGAAAGTA+TGG + chr2_1:13121579-13121598 Msa0196090:intron 20.0%
!!! GAAAACTTAATTGAAAGTAT+GGG + chr2_1:13121580-13121599 Msa0196090:intron 20.0%
!!! AAAACTTAATTGAAAGTATG+GGG + chr2_1:13121581-13121600 Msa0196090:intron 20.0%
!!! TTGTTGTTCTTAGAATAAAA+AGG + chr2_1:13121784-13121803 Msa0196090:intron 20.0%
!!! ACTGTACTGTTTTATATATA+AGG + chr2_1:13121914-13121933 Msa0196090:intron 20.0%
!!! TGAGTAAATTTTTGTAAGTT+TGG + chr2_1:13122023-13122042 Msa0196090:intron 20.0%
!! ATTTCTGTAAAATTTGAATG+TGG + chr2_1:13122052-13122071 Msa0196090:intron 20.0%
!! AAATGAAGTATACTTCATAT+TGG - chr2_1:13122301-13122320 None:intergenic 20.0%
!!! GTTAAATTTTCTGGATAAAA+AGG - chr2_1:13122401-13122420 None:intergenic 20.0%
!! TGAATTATATGCAATGATTA+TGG + chr2_1:13122854-13122873 Msa0196090:intron 20.0%
!! ATAAATTCAAACAACAAAAG+AGG - chr2_1:13122929-13122948 None:intergenic 20.0%
!!! GTCATTTATAATTTTCTTCA+AGG - chr2_1:13123155-13123174 None:intergenic 20.0%
!! AATTATAAATGACCAAATCA+AGG + chr2_1:13123162-13123181 Msa0196090:exon 20.0%
!!! GGTTAGTTATAGATTAATAT+TGG + chr2_1:13123183-13123202 Msa0196090:intron 20.0%
!! ATATATTGAATGCATAATGA+TGG - chr2_1:13123498-13123517 None:intergenic 20.0%
!!! AAAAGCATAAACTATTACAA+AGG - chr2_1:13123546-13123565 None:intergenic 20.0%
!!! TTTGGATGATTTTGTATTAT+CGG + chr2_1:13123846-13123865 Msa0196090:intron 20.0%
!!! TGAATATGAATTTGGTTTTA+TGG + chr2_1:13123913-13123932 Msa0196090:intron 20.0%
!!! GAATATGAATTTGGTTTTAT+GGG + chr2_1:13123914-13123933 Msa0196090:intron 20.0%
!!! TTTTTTGATGTATGGTTTTA+TGG + chr2_1:13123943-13123962 Msa0196090:intron 20.0%
!!! TTTTTGATGTATGGTTTTAT+GGG + chr2_1:13123944-13123963 Msa0196090:intron 20.0%
!!! TAATTTTTTTTTTTGGTAGC+TGG + chr2_1:13124054-13124073 Msa0196090:intron 20.0%
!!! ATTTTGAATTCTGTGTTTTT+AGG + chr2_1:13124078-13124097 Msa0196090:intron 20.0%
!!! TTTAGGATTTGTTTAGTTTT+AGG + chr2_1:13124095-13124114 Msa0196090:intron 20.0%
!! TAGGTATCAATCATATAAAA+TGG + chr2_1:13124114-13124133 Msa0196090:intron 20.0%
!! ATCAATCATATAAAATGGTT+AGG + chr2_1:13124119-13124138 Msa0196090:intron 20.0%
!! TCAATCATATAAAATGGTTA+GGG + chr2_1:13124120-13124139 Msa0196090:intron 20.0%
!! ATCATAAAGTAATTGAAATC+TGG - chr2_1:13124220-13124239 None:intergenic 20.0%
!! TTCAATTACTTTATGATGAT+AGG + chr2_1:13124223-13124242 Msa0196090:intron 20.0%
!!! ACATGATTTTTTTAACACAA+TGG + chr2_1:13124518-13124537 Msa0196090:intron 20.0%
!! AATTTCTATCATTATATACC+AGG - chr2_1:13124628-13124647 None:intergenic 20.0%
!!! CTAATTTTAAATTTATGTGC+AGG - chr2_1:13124838-13124857 None:intergenic 20.0%
!! TCTTTATGCTTGAAAAATAT+TGG + chr2_1:13125947-13125966 Msa0196090:three_prime_UTR 20.0%
!!! ATGACCTTGTTTAAATAAAT+AGG - chr2_1:13126807-13126826 None:intergenic 20.0%
!!! AATTGTAATTTGTGCATTAT+TGG + chr2_1:13127049-13127068 Msa0196090:three_prime_UTR 20.0%
!! ATAATTAAGATGAACCTAAT+TGG - chr2_1:13127089-13127108 None:intergenic 20.0%
!!! AATTATTATGTTGTTTTCCT+TGG + chr2_1:13127103-13127122 Msa0196090:three_prime_UTR 20.0%
!!! CTTTGATAAATACTTTAGAA+AGG + chr2_1:13127157-13127176 Msa0196090:three_prime_UTR 20.0%
! ATTAGAAGCAAAGGAAATTA+AGG + chr2_1:13121433-13121452 Msa0196090:five_prime_UTR 25.0%
!! AAACTTAATTGAAAGTATGG+GGG + chr2_1:13121582-13121601 Msa0196090:intron 25.0%
!! GTAAATTTTTGTACAAGTGA+TGG + chr2_1:13121645-13121664 Msa0196090:intron 25.0%
! ACACATGAGATATATCAATA+TGG - chr2_1:13121728-13121747 None:intergenic 25.0%
!!! TATATAAGGTGATTTTGATC+TGG + chr2_1:13121928-13121947 Msa0196090:intron 25.0%
! ACATTCAATCCAAAGAATTA+TGG - chr2_1:13121997-13122016 None:intergenic 25.0%
!! GTGTTTTATAAGGTTTTCTT+TGG + chr2_1:13122146-13122165 Msa0196090:intron 25.0%
!!! CAAGTTTTGGTTAAATTTTC+TGG - chr2_1:13122410-13122429 None:intergenic 25.0%
!!! AATCTGTTTGTTTTTGTGTT+TGG + chr2_1:13122957-13122976 Msa0196090:intron 25.0%
! TTGTTGAAATGTTGAAAACT+TGG + chr2_1:13122997-13123016 Msa0196090:intron 25.0%
!! GGAGTTTTTACTTGAAAAAT+TGG + chr2_1:13123032-13123051 Msa0196090:five_prime_UTR 25.0%
!!! TTCTGGTAATGATTTTGTAA+AGG + chr2_1:13123108-13123127 Msa0196090:five_prime_UTR 25.0%
! ATCTATAACTAACCTTGATT+TGG - chr2_1:13123177-13123196 None:intergenic 25.0%
! TTAGCTTATTCATGTCTTAA+AGG + chr2_1:13123219-13123238 Msa0196090:intron 25.0%
! AAAGAACTAGAAGACATAAA+TGG + chr2_1:13123357-13123376 Msa0196090:CDS 25.0%
! ACAGAGAATCATAAGAAAAA+GGG + chr2_1:13123408-13123427 Msa0196090:CDS 25.0%
! ATTGAAAAATTTGCATCATG+AGG + chr2_1:13123455-13123474 Msa0196090:CDS 25.0%
! GGAAAATGATAACTATTACA+CGG - chr2_1:13123525-13123544 None:intergenic 25.0%
! AGTCTATGTTAATTATACAC+TGG + chr2_1:13123593-13123612 Msa0196090:intron 25.0%
! TTGAAGTAATTAAGCAACTT+TGG - chr2_1:13123647-13123666 None:intergenic 25.0%
!!! TTTTTTTTGAAATTTTGCGC+TGG + chr2_1:13123753-13123772 Msa0196090:intron 25.0%
!!! TTTTTTTGAAATTTTGCGCT+GGG + chr2_1:13123754-13123773 Msa0196090:intron 25.0%
!!! GATTATTGATTTTTTATCGG+TGG + chr2_1:13123781-13123800 Msa0196090:intron 25.0%
!! AAAATTGAGAATTGGTTTAG+TGG + chr2_1:13123806-13123825 Msa0196090:intron 25.0%
!! AAATTGAGAATTGGTTTAGT+GGG + chr2_1:13123807-13123826 Msa0196090:intron 25.0%
!! TTTTTGAATGGCAAATATGT+TGG + chr2_1:13123888-13123907 Msa0196090:intron 25.0%
!!! TGTTGGTTTGAATATGAATT+TGG + chr2_1:13123905-13123924 Msa0196090:intron 25.0%
!!! GGTTTCTTTTTTTTGATGTA+TGG + chr2_1:13123935-13123954 Msa0196090:intron 25.0%
! CAATCATATAAAATGGTTAG+GGG + chr2_1:13124121-13124140 Msa0196090:intron 25.0%
! AAGAAAGATATAGAGATTAG+TGG + chr2_1:13124287-13124306 Msa0196090:intron 25.0%
! TATCTTCCAAAACTATAGAA+AGG + chr2_1:13124378-13124397 Msa0196090:intron 25.0%
!! TGTTGTTGTTGAGTTTAAAA+CGG - chr2_1:13124415-13124434 None:intergenic 25.0%
!!! TTGGTTGATGTTATTTTTCA+TGG - chr2_1:13124445-13124464 None:intergenic 25.0%
! AAGAAGTAATAACCAGAATA+TGG - chr2_1:13124603-13124622 None:intergenic 25.0%
!!! TTTTCCATAAAAAGCATCTA+AGG - chr2_1:13124655-13124674 None:intergenic 25.0%
!!! ATATAGCATTGATATAAGCA+AGG - chr2_1:13124741-13124760 None:intergenic 25.0%
! ATAATGTGTATATCCATTGT+AGG + chr2_1:13125035-13125054 Msa0196090:intron 25.0%
! TTGCTTCTTGCTTAAATTTA+TGG + chr2_1:13125589-13125608 Msa0196090:three_prime_UTR 25.0%
! AACAATAAAAAAAGAGGGAT+GGG - chr2_1:13125698-13125717 None:intergenic 25.0%
! AAACAATAAAAAAAGAGGGA+TGG - chr2_1:13125699-13125718 None:intergenic 25.0%
! TTAAGTTCAGTTATGGTAAA+TGG + chr2_1:13125844-13125863 Msa0196090:three_prime_UTR 25.0%
! TGACATAATTATAGCAGAAA+TGG - chr2_1:13125884-13125903 None:intergenic 25.0%
! ATCATAATTCAAAACCATGA+CGG - chr2_1:13126316-13126335 None:intergenic 25.0%
! CATGCAAAGAATAAATCATA+TGG - chr2_1:13126467-13126486 None:intergenic 25.0%
!! AAAAAAGTATGTTGAAAGCT+TGG + chr2_1:13126511-13126530 Msa0196090:intron 25.0%
!! CCTTGTTTAAATAAATAGGT+TGG - chr2_1:13126803-13126822 None:intergenic 25.0%
! CCAACCTATTTATTTAAACA+AGG + chr2_1:13126800-13126819 Msa0196090:intron 25.0%
!! AGTATTTATCAAAGCATCAA+AGG - chr2_1:13127151-13127170 None:intergenic 25.0%
CCTTTGCTTCTAATGTAAAT+CGG - chr2_1:13121427-13121446 None:intergenic 30.0%
GGAGATTTAAGAAGATATGA+AGG + chr2_1:13121805-13121824 Msa0196090:five_prime_UTR 30.0%
GTTGTTTAAGCACCTTAAAA+TGG + chr2_1:13121879-13121898 Msa0196090:intron 30.0%
! GTCACGAAAAATCCATTTTA+AGG - chr2_1:13121894-13121913 None:intergenic 30.0%
TTCTTTGGATTGAATGTTAG+AGG + chr2_1:13122000-13122019 Msa0196090:five_prime_UTR 30.0%
! TCTCTGTTGTGTGTTTTATA+AGG + chr2_1:13122136-13122155 Msa0196090:intron 30.0%
CAGCATTGTATATGCATAAA+AGG - chr2_1:13122635-13122654 None:intergenic 30.0%
TTAGTTGTGTGTCTTAAATG+AGG + chr2_1:13122667-13122686 Msa0196090:intron 30.0%
!!! TGGAATTGTTTTGAAACCAT+CGG - chr2_1:13122740-13122759 None:intergenic 30.0%
! AGAATGGTGATGATAAGTAT+TGG - chr2_1:13122760-13122779 None:intergenic 30.0%
ATTCCTACAAGTTTGAAGAA+TGG - chr2_1:13122776-13122795 None:intergenic 30.0%
!!! ATTTGATTTTGGTTTTGGCT+TGG + chr2_1:13122899-13122918 Msa0196090:intron 30.0%
AAAACTTGGAACAGATTAGA+GGG + chr2_1:13123011-13123030 Msa0196090:intron 30.0%
TTTCTTCAAGGATTCATAGT+TGG - chr2_1:13123143-13123162 None:intergenic 30.0%
!! CTTTTGAAAAGAGAAGAGAA+TGG + chr2_1:13123301-13123320 Msa0196090:CDS 30.0%
GACAGAGAATCATAAGAAAA+AGG + chr2_1:13123407-13123426 Msa0196090:CDS 30.0%
TTAACATAGACTCATAGCTA+TGG - chr2_1:13123585-13123604 None:intergenic 30.0%
TTATACACTGGAGACTATAT+AGG + chr2_1:13123605-13123624 Msa0196090:intron 30.0%
! TGATTTTGTATTATCGGTGT+TGG + chr2_1:13123852-13123871 Msa0196090:intron 30.0%
TTCGTCAGATTTGATGAAAT+TGG + chr2_1:13123988-13124007 Msa0196090:intron 30.0%
TCGTCAGATTTGATGAAATT+GGG + chr2_1:13123989-13124008 Msa0196090:intron 30.0%
! TCTCTATGAATCAGTTGATA+TGG + chr2_1:13124172-13124191 Msa0196090:intron 30.0%
! GGAATTTGTTCAGATTTGTT+TGG + chr2_1:13124308-13124327 Msa0196090:intron 30.0%
! GAAGTTCCTTTCTATAGTTT+TGG - chr2_1:13124387-13124406 None:intergenic 30.0%
! GTTGTTGTTGAGTTTAAAAC+GGG - chr2_1:13124414-13124433 None:intergenic 30.0%
!!! GTTGATGTTATTTTTCATGG+AGG - chr2_1:13124442-13124461 None:intergenic 30.0%
! TTTTTGTCTGCCATTCTTAT+AGG + chr2_1:13124563-13124582 Msa0196090:intron 30.0%
! TGGTTTGTAAATCCATATTC+TGG + chr2_1:13124588-13124607 Msa0196090:intron 30.0%
!! ATGTCCTTAGATGCTTTTTA+TGG + chr2_1:13124648-13124667 Msa0196090:intron 30.0%
! CTTTTTATGGAAAATGTCGT+CGG + chr2_1:13124661-13124680 Msa0196090:intron 30.0%
GAATTTGATGCAGAAATAGT+GGG - chr2_1:13124803-13124822 None:intergenic 30.0%
AGAATTTGATGCAGAAATAG+TGG - chr2_1:13124804-13124823 None:intergenic 30.0%
TAAAATTAGTTACTTCCCTC+TGG + chr2_1:13124849-13124868 Msa0196090:intron 30.0%
AAAATTAGTTACTTCCCTCT+GGG + chr2_1:13124850-13124869 Msa0196090:intron 30.0%
TGGATATACACATTATTAGC+TGG - chr2_1:13125031-13125050 None:intergenic 30.0%
TGTATATCCATTGTAGGTTT+CGG + chr2_1:13125041-13125060 Msa0196090:intron 30.0%
GTTGTTTGAATTGCGAAAAT+TGG + chr2_1:13125239-13125258 Msa0196090:intron 30.0%
!!! GTATGTTTTAGCTTTTACCA+GGG + chr2_1:13125261-13125280 Msa0196090:intron 30.0%
! TCCATTTCTTTTTCTTGCTA+TGG + chr2_1:13125322-13125341 Msa0196090:intron 30.0%
TTAAAATCGATGCTTTACTG+AGG + chr2_1:13125405-13125424 Msa0196090:three_prime_UTR 30.0%
TAAAATCGATGCTTTACTGA+GGG + chr2_1:13125406-13125425 Msa0196090:three_prime_UTR 30.0%
CATAATCAAACCTGAAATCT+AGG + chr2_1:13125767-13125786 Msa0196090:three_prime_UTR 30.0%
!!! GCAGATTTTAAGTTCAGTTA+TGG + chr2_1:13125837-13125856 Msa0196090:three_prime_UTR 30.0%
ATAATTATAGCAGAAATGGC+AGG - chr2_1:13125880-13125899 None:intergenic 30.0%
TGTAATTGCGTCATATAATG+AGG + chr2_1:13125912-13125931 Msa0196090:three_prime_UTR 30.0%
TATTTGACATGACTGCTATT+TGG + chr2_1:13125978-13125997 Msa0196090:three_prime_UTR 30.0%
GAATGAAAACTTAAGCAACT+TGG + chr2_1:13126037-13126056 Msa0196090:three_prime_UTR 30.0%
ACATTGCTACTAATGAGAAA+GGG - chr2_1:13126117-13126136 None:intergenic 30.0%
AACATTGCTACTAATGAGAA+AGG - chr2_1:13126118-13126137 None:intergenic 30.0%
GTTCTTGATCTTGGATAAAT+AGG + chr2_1:13126149-13126168 Msa0196090:three_prime_UTR 30.0%
CGACTAATTAGAATCATTCA+AGG - chr2_1:13126187-13126206 None:intergenic 30.0%
GTTGCGAAAGAGTTAAATAA+TGG + chr2_1:13126359-13126378 Msa0196090:intron 30.0%
! TAAGCTTTGATTATGTCTCT+TGG + chr2_1:13126602-13126621 Msa0196090:intron 30.0%
GTAGTCTTCTTTCAAATGTA+TGG - chr2_1:13126684-13126703 None:intergenic 30.0%
! GCAACGTGCTTTTATAATTT+TGG + chr2_1:13127017-13127036 Msa0196090:three_prime_UTR 30.0%
! ATATTTTGTTCATGAGACCA+AGG - chr2_1:13127123-13127142 None:intergenic 30.0%
TAATGTAAATCGGTGCAGAT+CGG - chr2_1:13121417-13121436 None:intergenic 35.0%
CCGATTTACATTAGAAGCAA+AGG + chr2_1:13121424-13121443 Msa0196090:five_prime_UTR 35.0%
TTGGTTGAGTAAGAAAAGAG+AGG - chr2_1:13121479-13121498 None:intergenic 35.0%
ATTGAAATTGGGGCTGAAAA+GGG - chr2_1:13121509-13121528 None:intergenic 35.0%
AATTGAAATTGGGGCTGAAA+AGG - chr2_1:13121510-13121529 None:intergenic 35.0%
GAGGAAGAAACAAGAAGAAT+TGG + chr2_1:13121620-13121639 Msa0196090:five_prime_UTR 35.0%
GAAGAAACAAGAAGAATTGG+AGG + chr2_1:13121623-13121642 Msa0196090:five_prime_UTR 35.0%
GGCAAATCATTTCTGTTTGA+TGG + chr2_1:13121666-13121685 Msa0196090:intron 35.0%
ATGATTACTACTTCTGTTGC+AGG + chr2_1:13121955-13121974 Msa0196090:intron 35.0%
! GGTTTGGTTCCATAATTCTT+TGG + chr2_1:13121985-13122004 Msa0196090:five_prime_UTR 35.0%
TAATCATGAAACTCGCTCTA+TGG + chr2_1:13122090-13122109 Msa0196090:intron 35.0%
AATCATGAAACTCGCTCTAT+GGG + chr2_1:13122091-13122110 Msa0196090:intron 35.0%
!! TCAACTACAGCTTCAAGTTT+TGG - chr2_1:13122423-13122442 None:intergenic 35.0%
AAAATTATGCAGCTGCAAGT+GGG + chr2_1:13122510-13122529 Msa0196090:intron 35.0%
TCACCATTCTTCAAACTTGT+AGG + chr2_1:13122770-13122789 Msa0196090:intron 35.0%
AAACTTGTAGGAATGATGAG+TGG + chr2_1:13122782-13122801 Msa0196090:intron 35.0%
TGATGAGTGGATCATAAAGA+AGG + chr2_1:13122795-13122814 Msa0196090:intron 35.0%
GAAAACTTGGAACAGATTAG+AGG + chr2_1:13123010-13123029 Msa0196090:intron 35.0%
CAATATATGGAAAGAGCTTC+TGG + chr2_1:13123091-13123110 Msa0196090:five_prime_UTR 35.0%
TGAAAAGAGAAGAGAATGGA+TGG + chr2_1:13123305-13123324 Msa0196090:CDS 35.0%
TTTCACACCATGTCTTACTT+TGG - chr2_1:13123340-13123359 None:intergenic 35.0%
AAAAGGGTGAAGCATATCAA+AGG + chr2_1:13123424-13123443 Msa0196090:CDS 35.0%
GAAAAATTTGCATCATGAGG+AGG + chr2_1:13123458-13123477 Msa0196090:CDS 35.0%
CGGTGGAAAAAATTGAGAAT+TGG + chr2_1:13123798-13123817 Msa0196090:intron 35.0%
TATGGGTTTCATGTGTTTGT+TGG + chr2_1:13123961-13123980 Msa0196090:intron 35.0%
GAAATTGGGTGTTCTTATTG+AGG + chr2_1:13124003-13124022 Msa0196090:intron 35.0%
!!! GATGTTATTTTTCATGGAGG+TGG - chr2_1:13124439-13124458 None:intergenic 35.0%
ACAAACCATGCCTATAAGAA+TGG - chr2_1:13124576-13124595 None:intergenic 35.0%
! CTGGTTATTACTTCTTTTCC+TGG + chr2_1:13124607-13124626 Msa0196090:intron 35.0%
!! CATATCAGTTGGTCTTAACA+TGG + chr2_1:13124887-13124906 Msa0196090:CDS 35.0%
TCTTAACATGGCTTAAGCTT+TGG + chr2_1:13124899-13124918 Msa0196090:CDS 35.0%
AAGAATGATACAGAAAGCGA+CGG - chr2_1:13124977-13124996 None:intergenic 35.0%
CATTGTCTTGACTGCTTAAT+AGG - chr2_1:13125093-13125112 None:intergenic 35.0%
CTATTAAGCAGTCAAGACAA+TGG + chr2_1:13125091-13125110 Msa0196090:CDS 35.0%
!!! GGTATGTTTTAGCTTTTACC+AGG + chr2_1:13125260-13125279 Msa0196090:intron 35.0%
!!! TTTAGCTTTTACCAGGGTAT+AGG + chr2_1:13125267-13125286 Msa0196090:intron 35.0%
GCCATAGCAAGAAAAAGAAA+TGG - chr2_1:13125326-13125345 None:intergenic 35.0%
! AAATATGTGCCACTGATAGA+GGG - chr2_1:13125667-13125686 None:intergenic 35.0%
AGTTCAGTTATGGTAAATGG+CGG + chr2_1:13125847-13125866 Msa0196090:three_prime_UTR 35.0%
GCATATTGAGTTCTTGATCT+TGG + chr2_1:13126140-13126159 Msa0196090:three_prime_UTR 35.0%
AGGTAAGCTGAATCATGTTT+AGG + chr2_1:13126287-13126306 Msa0196090:intron 35.0%
GGTAAGCTGAATCATGTTTA+GGG + chr2_1:13126288-13126307 Msa0196090:intron 35.0%
TATTTAACTCTTTCGCAACG+TGG - chr2_1:13126358-13126377 None:intergenic 35.0%
!! GTATTTGTTTTTCCTTGTGC+AGG + chr2_1:13126649-13126668 Msa0196090:intron 35.0%
TTTGAAAGAAGACTACGTCT+TGG + chr2_1:13126688-13126707 Msa0196090:three_prime_UTR 35.0%
!! TGCATTATTGGTTCCTTCAT+TGG + chr2_1:13127061-13127080 Msa0196090:three_prime_UTR 35.0%
!! TTCCTTCATTGGTTCCAATT+AGG + chr2_1:13127072-13127091 Msa0196090:three_prime_UTR 35.0%
AACCTAATTGGAACCAATGA+AGG - chr2_1:13127077-13127096 None:intergenic 35.0%
! TTAATTGAAAGTATGGGGGC+TGG + chr2_1:13121586-13121605 Msa0196090:intron 40.0%
! TAATTGAAAGTATGGGGGCT+GGG + chr2_1:13121587-13121606 Msa0196090:intron 40.0%
ACTTCTGTTGCAGGAAACAT+TGG + chr2_1:13121964-13121983 Msa0196090:intron 40.0%
! TGTTGCAGGAAACATTGGTT+TGG + chr2_1:13121969-13121988 Msa0196090:intron 40.0%
GAAAATTATGCAGCTGCAAG+TGG + chr2_1:13122509-13122528 Msa0196090:intron 40.0%
! TGAGAATTGGTTTAGTGGGT+CGG + chr2_1:13123811-13123830 Msa0196090:intron 40.0%
!! GGTCGGTGAAAGTTTGTTTT+TGG + chr2_1:13123828-13123847 Msa0196090:intron 40.0%
GTACTTTCAGGCATATCAGT+TGG + chr2_1:13124876-13124895 Msa0196090:intron 40.0%
!! GTTTTGACCGAAACCTACAA+TGG - chr2_1:13125051-13125070 None:intergenic 40.0%
AGGAAGTTCTTCAAGCCTTT+GGG - chr2_1:13125073-13125092 None:intergenic 40.0%
TAGGAAGTTCTTCAAGCCTT+TGG - chr2_1:13125074-13125093 None:intergenic 40.0%
!! ACCAAAGCCTTAGGTATTGA+CGG - chr2_1:13125129-13125148 None:intergenic 40.0%
AGTTTACTCACCAAAGCCTT+AGG - chr2_1:13125138-13125157 None:intergenic 40.0%
TGCTATGGCGCGTTATTTAA+TGG + chr2_1:13125337-13125356 Msa0196090:intron 40.0%
!! TTTACTGAGGGTTGGTTTCT+AGG + chr2_1:13125418-13125437 Msa0196090:three_prime_UTR 40.0%
!! TTACTGAGGGTTGGTTTCTA+GGG + chr2_1:13125419-13125438 Msa0196090:three_prime_UTR 40.0%
TACTGCGTGTATAATGCATG+TGG + chr2_1:13125511-13125530 Msa0196090:three_prime_UTR 40.0%
! CAAATATGTGCCACTGATAG+AGG - chr2_1:13125668-13125687 None:intergenic 40.0%
CTCTATCAGTGGCACATATT+TGG + chr2_1:13125666-13125685 Msa0196090:three_prime_UTR 40.0%
GAAAGCAACACCTAGATTTC+AGG - chr2_1:13125780-13125799 None:intergenic 40.0%
AAATGATGCCGCTGAGATTA+AGG + chr2_1:13126267-13126286 Msa0196090:three_prime_UTR 40.0%
TCAGCTTACCTTAATCTCAG+CGG - chr2_1:13126278-13126297 None:intergenic 40.0%
TGAATTATGATCACAGCCAC+AGG + chr2_1:13126325-13126344 Msa0196090:intron 40.0%
! TGTTTTTCCTTGTGCAGGAA+CGG + chr2_1:13126654-13126673 Msa0196090:intron 40.0%
TGCAGTCAATTCTCTGTACA+AGG + chr2_1:13126861-13126880 Msa0196090:intron 40.0%
AGAAAGAGCAACCATTGAAG+AGG + chr2_1:13126937-13126956 Msa0196090:three_prime_UTR 40.0%
AGAAGAGCTGAAAGAGAGAG+AGG + chr2_1:13121324-13121343 Msa0196090:five_prime_UTR 45.0%
GAAGAGCTGAAAGAGAGAGA+GGG + chr2_1:13121325-13121344 Msa0196090:five_prime_UTR 45.0%
ATTGGGGCTGAAAAGGGTTA+GGG - chr2_1:13121503-13121522 None:intergenic 45.0%
AATTGGGGCTGAAAAGGGTT+AGG - chr2_1:13121504-13121523 None:intergenic 45.0%
TGCAATAGCAGATGTGTTGC+AGG + chr2_1:13122176-13122195 Msa0196090:intron 45.0%
ATAGCAGATGTGTTGCAGGA+AGG + chr2_1:13122180-13122199 Msa0196090:intron 45.0%
TCTGCAGTCGAAATTGTGAC+TGG + chr2_1:13122583-13122602 Msa0196090:intron 45.0%
TGTGCCACCAAAGTAAGACA+TGG + chr2_1:13123330-13123349 Msa0196090:CDS 45.0%
CACACCATGTCTTACTTTGG+TGG - chr2_1:13123337-13123356 None:intergenic 45.0%
GTCTGCCATTCTTATAGGCA+TGG + chr2_1:13124568-13124587 Msa0196090:intron 45.0%
GGAATTGACTGAGATCGAGA+TGG - chr2_1:13124933-13124952 None:intergenic 45.0%
TCGATCTCAGTCAATTCCTC+AGG + chr2_1:13124935-13124954 Msa0196090:CDS 45.0%
AGGTTTCGGTCAAAACCCAA+AGG + chr2_1:13125055-13125074 Msa0196090:intron 45.0%
!! TTAGGTATTGACGGTGTCAC+TGG - chr2_1:13125120-13125139 None:intergenic 45.0%
AGTGACACCGTCAATACCTA+AGG + chr2_1:13125119-13125138 Msa0196090:exon 45.0%
ACCGTCAATACCTAAGGCTT+TGG + chr2_1:13125125-13125144 Msa0196090:three_prime_UTR 45.0%
! AATTAGCCGACTCCACTTAG+TGG + chr2_1:13125196-13125215 Msa0196090:intron 45.0%
! ATTAGCCGACTCCACTTAGT+GGG + chr2_1:13125197-13125216 Msa0196090:intron 45.0%
CTTATCCCACTAAGTGGAGT+CGG - chr2_1:13125205-13125224 None:intergenic 45.0%
! CCAAGTCTTATCCCACTAAG+TGG - chr2_1:13125211-13125230 None:intergenic 45.0%
CCACTTAGTGGGATAAGACT+TGG + chr2_1:13125208-13125227 Msa0196090:intron 45.0%
CTTCAGGAAATCCTATACCC+TGG - chr2_1:13125281-13125300 None:intergenic 45.0%
GGGTATAGGATTTCCTGAAG+TGG + chr2_1:13125281-13125300 Msa0196090:intron 45.0%
!! TCCTGAAGTGGTTTTGCACT+TGG + chr2_1:13125293-13125312 Msa0196090:intron 45.0%
!! CCTGAAGTGGTTTTGCACTT+GGG + chr2_1:13125294-13125313 Msa0196090:intron 45.0%
ATCGATGCTTTACTGAGGGT+TGG + chr2_1:13125410-13125429 Msa0196090:three_prime_UTR 45.0%
AGTAGTCCCCAACTACACTA+TGG + chr2_1:13125802-13125821 Msa0196090:three_prime_UTR 45.0%
! GTTTTTCCTTGTGCAGGAAC+GGG + chr2_1:13126655-13126674 Msa0196090:intron 45.0%
! TTTTTCCTTGTGCAGGAACG+GGG + chr2_1:13126656-13126675 Msa0196090:intron 45.0%
GAAAGAAGACTACGTCTTGG+TGG + chr2_1:13126691-13126710 Msa0196090:three_prime_UTR 45.0%
! GCGATGTTTTCCTTCACCAA+TGG - chr2_1:13126718-13126737 None:intergenic 45.0%
GAAGGAAAACATCGCAACCA+TGG + chr2_1:13126723-13126742 Msa0196090:three_prime_UTR 45.0%
CTCTAACCTCTCAAGAACCA+TGG - chr2_1:13126743-13126762 None:intergenic 45.0%
TTTCGGCAAGATGGGTGTTT+CGG + chr2_1:13126995-13127014 Msa0196090:three_prime_UTR 45.0%
GGCTGAAAAGGGTTAGGGTT+TGG - chr2_1:13121498-13121517 None:intergenic 50.0%
GCAGGAAGGAGAAGCTATTG+AGG + chr2_1:13122194-13122213 Msa0196090:intron 50.0%
GCGATTCGTCATAGTTCCGA+TGG + chr2_1:13122721-13122740 Msa0196090:intron 50.0%
! CCTGAAAGTACAGACCCAGA+GGG - chr2_1:13124867-13124886 None:intergenic 50.0%
! CATGGCTTAAGCTTTGGTGC+AGG + chr2_1:13124905-13124924 Msa0196090:CDS 50.0%
ACAGCTAGCTCAACTACCTG+AGG - chr2_1:13124954-13124973 None:intergenic 50.0%
CCCAAGTGCAAAACCACTTC+AGG - chr2_1:13125297-13125316 None:intergenic 50.0%
GATAGAGGGTGGCTAAGAGA+GGG - chr2_1:13125653-13125672 None:intergenic 50.0%
TGATAGAGGGTGGCTAAGAG+AGG - chr2_1:13125654-13125673 None:intergenic 50.0%
TCTTAGCCACCCTCTATCAG+TGG + chr2_1:13125655-13125674 Msa0196090:three_prime_UTR 50.0%
! TATGTGCCACTGATAGAGGG+TGG - chr2_1:13125664-13125683 None:intergenic 50.0%
AGTCCCCAACTACACTATGG+CGG + chr2_1:13125805-13125824 Msa0196090:three_prime_UTR 50.0%
AACCCGCCATAGTGTAGTTG+GGG - chr2_1:13125811-13125830 None:intergenic 50.0%
CAACCCGCCATAGTGTAGTT+GGG - chr2_1:13125812-13125831 None:intergenic 50.0%
ACAACCCGCCATAGTGTAGT+TGG - chr2_1:13125813-13125832 None:intergenic 50.0%
!! AACTACACTATGGCGGGTTG+TGG + chr2_1:13125812-13125831 Msa0196090:three_prime_UTR 50.0%
! TTTTCCTTGTGCAGGAACGG+GGG + chr2_1:13126657-13126676 Msa0196090:intron 50.0%
! ACTACGTCTTGGTGGTCCAT+TGG + chr2_1:13126699-13126718 Msa0196090:three_prime_UTR 50.0%
! TCTTGGTGGTCCATTGGTGA+AGG + chr2_1:13126705-13126724 Msa0196090:three_prime_UTR 50.0%
TCGCAACCATGGTTCTTGAG+AGG + chr2_1:13126734-13126753 Msa0196090:three_prime_UTR 50.0%
ACGCAGTCTGTTACACTGGT+TGG + chr2_1:13126961-13126980 Msa0196090:three_prime_UTR 50.0%
! CTGTTACACTGGTTGGACTG+AGG + chr2_1:13126968-13126987 Msa0196090:three_prime_UTR 50.0%
CTGAAAGAGAGAGAGGGTCG+CGG + chr2_1:13121331-13121350 Msa0196090:five_prime_UTR 55.0%
TGAAAGAGAGAGAGGGTCGC+GGG + chr2_1:13121332-13121351 Msa0196090:five_prime_UTR 55.0%
!! GTGCAGATCGGAGTGTTGGA+CGG - chr2_1:13121405-13121424 None:intergenic 55.0%
ATCGGTGCAGATCGGAGTGT+TGG - chr2_1:13121409-13121428 None:intergenic 55.0%
ATGGGGGCTGGGTTTGCAAT+TGG + chr2_1:13121598-13121617 Msa0196090:five_prime_UTR 55.0%
CCCTCTGGGTCTGTACTTTC+AGG + chr2_1:13124864-13124883 Msa0196090:intron 55.0%
! GCCTGAAAGTACAGACCCAG+AGG - chr2_1:13124868-13124887 None:intergenic 55.0%
!! CTGAGGGTTGGTTTCTAGGG+AGG + chr2_1:13125422-13125441 Msa0196090:three_prime_UTR 55.0%
GTCCCCAACTACACTATGGC+GGG + chr2_1:13125806-13125825 Msa0196090:three_prime_UTR 55.0%
!! TACACTATGGCGGGTTGTGG+TGG + chr2_1:13125815-13125834 Msa0196090:three_prime_UTR 55.0%
ATGATCACAGCCACAGGTGC+TGG + chr2_1:13126331-13126350 Msa0196090:intron 55.0%
ACAAGGACAGCATGTGCTGC+AGG + chr2_1:13126878-13126897 Msa0196090:three_prime_UTR 55.0%
CAAGGACAGCATGTGCTGCA+GGG + chr2_1:13126879-13126898 Msa0196090:three_prime_UTR 55.0%
CAGACTGCGTGCCTCTTCAA+TGG - chr2_1:13126951-13126970 None:intergenic 55.0%
AGGCACGCAGTCTGTTACAC+TGG + chr2_1:13126957-13126976 Msa0196090:three_prime_UTR 55.0%
! TACACTGGTTGGACTGAGGC+AGG + chr2_1:13126972-13126991 Msa0196090:three_prime_UTR 55.0%
GGTTGGACTGAGGCAGGTTT+CGG + chr2_1:13126978-13126997 Msa0196090:three_prime_UTR 55.0%
TGAGGCAGGTTTCGGCAAGA+TGG + chr2_1:13126986-13127005 Msa0196090:three_prime_UTR 55.0%
GAGGCAGGTTTCGGCAAGAT+GGG + chr2_1:13126987-13127006 Msa0196090:three_prime_UTR 55.0%
GGGGCTGGGTTTGCAATTGG+AGG + chr2_1:13121601-13121620 Msa0196090:five_prime_UTR 60.0%
AGAGGGTCGCCGGGAGAGAA+AGG + chr2_1:13121360-13121379 Msa0196090:five_prime_UTR 65.0%
GAGGGTCGCCGGGAGAGAAA+GGG + chr2_1:13121361-13121380 Msa0196090:five_prime_UTR 65.0%
GTGTTGGACGGCGAGGTCGA+CGG - chr2_1:13121393-13121412 None:intergenic 65.0%
!! GATCGGAGTGTTGGACGGCG+AGG - chr2_1:13121400-13121419 None:intergenic 65.0%
GCAACGTGGACCAGCACCTG+TGG - chr2_1:13126344-13126363 None:intergenic 65.0%
TGGTCCCCCGTTCCTGCACA+AGG - chr2_1:13126664-13126683 None:intergenic 65.0%
GGACAGCATGTGCTGCAGGG+TGG + chr2_1:13126882-13126901 Msa0196090:three_prime_UTR 65.0%
GAGAGAGAGGGTCGCGGGAG+AGG + chr2_1:13121337-13121356 Msa0196090:five_prime_UTR 70.0%
AGAGGGTCGCGGGAGAGGAG+AGG + chr2_1:13121342-13121361 Msa0196090:five_prime_UTR 70.0%
GAGGGTCGCGGGAGAGGAGA+GGG + chr2_1:13121343-13121362 Msa0196090:five_prime_UTR 70.0%
GGCGGCGACCCTTTCTCTCC+CGG - chr2_1:13121372-13121391 None:intergenic 70.0%
TTGGACGGCGAGGTCGACGG+CGG - chr2_1:13121390-13121409 None:intergenic 70.0%
GCGGGAGAGGAGAGGGTCGC+CGG + chr2_1:13121350-13121369 Msa0196090:five_prime_UTR 75.0%
CGGGAGAGGAGAGGGTCGCC+GGG + chr2_1:13121351-13121370 Msa0196090:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 13121312 13127208 13121312 ID=Msa0196090;Name=Msa0196090
chr2_1 mRNA 13121312 13127208 13121312 ID=Msa0196090-mRNA-1;Parent=Msa0196090;Name=Msa0196090-mRNA-1;_AED=0.14;_eAED=0.14;_QI=411|0.9|0.90|1|0.1|0.09|11|1370|114
chr2_1 exon 13121312 13121454 13121312 ID=Msa0196090-mRNA-1:exon:5721;Parent=Msa0196090-mRNA-1
chr2_1 exon 13121597 13121644 13121597 ID=Msa0196090-mRNA-1:exon:5722;Parent=Msa0196090-mRNA-1
chr2_1 exon 13121797 13121826 13121797 ID=Msa0196090-mRNA-1:exon:5723;Parent=Msa0196090-mRNA-1
chr2_1 exon 13121977 13122021 13121977 ID=Msa0196090-mRNA-1:exon:5724;Parent=Msa0196090-mRNA-1
chr2_1 exon 13123025 13123183 13123025 ID=Msa0196090-mRNA-1:exon:5725;Parent=Msa0196090-mRNA-1
chr2_1 exon 13123287 13123479 13123287 ID=Msa0196090-mRNA-1:exon:5726;Parent=Msa0196090-mRNA-1
chr2_1 exon 13124886 13124956 13124886 ID=Msa0196090-mRNA-1:exon:5727;Parent=Msa0196090-mRNA-1
chr2_1 exon 13125057 13125167 13125057 ID=Msa0196090-mRNA-1:exon:5728;Parent=Msa0196090-mRNA-1
chr2_1 exon 13125391 13126288 13125391 ID=Msa0196090-mRNA-1:exon:5729;Parent=Msa0196090-mRNA-1
chr2_1 exon 13126671 13126755 13126671 ID=Msa0196090-mRNA-1:exon:5730;Parent=Msa0196090-mRNA-1
chr2_1 exon 13126866 13127208 13126866 ID=Msa0196090-mRNA-1:exon:5731;Parent=Msa0196090-mRNA-1
chr2_1 five_prime_UTR 13121312 13121454 13121312 ID=Msa0196090-mRNA-1:five_prime_utr;Parent=Msa0196090-mRNA-1
chr2_1 five_prime_UTR 13121597 13121644 13121597 ID=Msa0196090-mRNA-1:five_prime_utr;Parent=Msa0196090-mRNA-1
chr2_1 five_prime_UTR 13121797 13121826 13121797 ID=Msa0196090-mRNA-1:five_prime_utr;Parent=Msa0196090-mRNA-1
chr2_1 five_prime_UTR 13121977 13122021 13121977 ID=Msa0196090-mRNA-1:five_prime_utr;Parent=Msa0196090-mRNA-1
chr2_1 five_prime_UTR 13123025 13123169 13123025 ID=Msa0196090-mRNA-1:five_prime_utr;Parent=Msa0196090-mRNA-1
chr2_1 CDS 13123170 13123183 13123170 ID=Msa0196090-mRNA-1:cds;Parent=Msa0196090-mRNA-1
chr2_1 CDS 13123287 13123479 13123287 ID=Msa0196090-mRNA-1:cds;Parent=Msa0196090-mRNA-1
chr2_1 CDS 13124886 13124956 13124886 ID=Msa0196090-mRNA-1:cds;Parent=Msa0196090-mRNA-1
chr2_1 CDS 13125057 13125123 13125057 ID=Msa0196090-mRNA-1:cds;Parent=Msa0196090-mRNA-1
chr2_1 three_prime_UTR 13125124 13125167 13125124 ID=Msa0196090-mRNA-1:three_prime_utr;Parent=Msa0196090-mRNA-1
chr2_1 three_prime_UTR 13125391 13126288 13125391 ID=Msa0196090-mRNA-1:three_prime_utr;Parent=Msa0196090-mRNA-1
chr2_1 three_prime_UTR 13126671 13126755 13126671 ID=Msa0196090-mRNA-1:three_prime_utr;Parent=Msa0196090-mRNA-1
chr2_1 three_prime_UTR 13126866 13127208 13126866 ID=Msa0196090-mRNA-1:three_prime_utr;Parent=Msa0196090-mRNA-1
Gene Sequence

>Msa0196090

ATGACCAAATCAAGCTTATGTGATGAATCTTTTGAAAAGAGAAGAGAATGGATGGAATGTGCCACCAAAGTAAGACATGGTGTGAAAGAACTAGAAGACATAAATGGAGAACTATATTATTTGAGAGAAAAGTTGACAGAGAATCATAAGAAAAAGGGTGAAGCATATCAAAGGATTTTAAAATTGAAAAATTTGCATCATGAGGAGGCATATCAGTTGGTCTTAACATGGCTTAAGCTTTGGTGCAGGCTCCATCTCGATCTCAGTCAATTCCTCAGGTTTCGGTCAAAACCCAAAGGCTTGAAGAACTTCCTATTAAGCAGTCAAGACAATGGATTCCAGTGA
Protein sequence

>Msa0196090

MTKSSLCDESFEKRREWMECATKVRHGVKELEDINGELYYLREKLTENHKKKGEAYQRILKLKNLHHEEAYQLVLTWLKLWCRLHLDLSQFLRFRSKPKGLKNFLLSSQDNGFQ*