AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1359930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359930 MtrunA17_Chr2g0324581 89.062 64 7 0 6 69 239 302 4.66e-32 115
Msa1359930 MtrunA17_Chr2g0324591 79.688 64 13 0 6 69 257 320 2.75e-26 100
Msa1359930 MtrunA17_Chr2g0324661 58.462 65 22 3 6 68 212 273 2.34e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 134 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTTCTTGCTTAAATTTA+TGG 0.097898 tig0016833:+18628 Msa1359930:three_prime_UTR
TTAAGTTCTGTTATGGTAAA+TGG 0.188397 tig0016833:+18883 Msa1359930:three_prime_UTR
ACAATTTCAAATTCAATATA+TGG 0.204005 tig0016833:+16114 Msa1359930:five_prime_UTR
GAAACCAACGCCTAGATTTC+AGG 0.215665 tig0016833:-18816 None:intergenic
AATTGTAATTTGTGCATTAT+TGG 0.225543 tig0016833:+20086 Msa1359930:three_prime_UTR
GTTCTTGATCTTGGATAAAT+AGG 0.228031 tig0016833:+19186 Msa1359930:three_prime_UTR
GACAGAGAATCATAAGAAAA+AGG 0.233023 tig0016833:+16443 Msa1359930:CDS
TGCATTATTGGTTCCTTCAT+TGG 0.240192 tig0016833:+20098 Msa1359930:three_prime_UTR
CTCTATCAGTGGCACATATT+TGG 0.240256 tig0016833:+18705 Msa1359930:three_prime_UTR
TATTTGACATGACTGCTATT+TGG 0.243259 tig0016833:+19017 Msa1359930:three_prime_UTR
TTTCAAATGTTTGTGCAATA+TGG 0.251188 tig0016833:+20223 Msa1359930:three_prime_UTR
TTTACTGAGGGTGGGTTTCT+AGG 0.260697 tig0016833:+18457 Msa1359930:three_prime_UTR
ATTAGAAGCAAAGGAAATTA+AGG 0.271373 tig0016833:+14468 Msa1359930:five_prime_UTR
ATAATTAAGATGAAACTAAT+TGG 0.284724 tig0016833:-20123 None:intergenic
TCTTTATGCTTGAAGAATAT+TGG 0.292148 tig0016833:+18986 Msa1359930:three_prime_UTR
TAGCAAGTTCTTCAAGCCTT+TGG 0.295788 tig0016833:-18113 None:intergenic
ATCTATAACTAACCTTGATT+TGG 0.296096 tig0016833:-16210 None:intergenic
ACATTCAATCCAAAGAATTA+TGG 0.303975 tig0016833:-15029 None:intergenic
AAATGATGCCGCTGAGATTA+AGG 0.307981 tig0016833:+19304 Msa1359930:three_prime_UTR
GGTTTGGTTCCATAATTCTT+TGG 0.308785 tig0016833:+15020 Msa1359930:five_prime_UTR
TTCTTTGGATTGAATGTTAG+AGG 0.319498 tig0016833:+15035 Msa1359930:five_prime_UTR
GAAAACTTGGAACAGATTAG+AGG 0.320467 tig0016833:+16046 Msa1359930:intron
TCATATTGAGTTCTTGATCT+TGG 0.321293 tig0016833:+19177 Msa1359930:three_prime_UTR
GAGGAAGAAACAAGAAGAAT+TGG 0.332205 tig0016833:+14655 Msa1359930:five_prime_UTR
TTGTTGTTCTTAGAATAAAA+AGG 0.336964 tig0016833:+14819 Msa1359930:intron
CAATATATGGAAAGAGCTTC+TGG 0.347044 tig0016833:+16127 Msa1359930:five_prime_UTR
AAAGAACTAGAAGACATAAA+TGG 0.349189 tig0016833:+16393 Msa1359930:CDS
AGCAAGTTCTTCAAGCCTTT+GGG 0.357377 tig0016833:-18112 None:intergenic
TCTTAACATGGCTTAAGCTT+TGG 0.367884 tig0016833:+17941 Msa1359930:CDS
GGTTGGACTGAGGCAGGTTT+CGG 0.378173 tig0016833:+20015 Msa1359930:three_prime_UTR
GTAGTCTTCTTTCAAATGTA+TGG 0.378293 tig0016833:-19718 None:intergenic
TTACTGAGGGTGGGTTTCTA+GGG 0.379714 tig0016833:+18458 Msa1359930:three_prime_UTR
TGACATAATTATAGCAGAAA+TGG 0.387629 tig0016833:-18920 None:intergenic
TTTCGGCAAGATGGGTGTTT+CGG 0.388400 tig0016833:+20032 Msa1359930:three_prime_UTR
CATAATCAAACCTGAAATCT+AGG 0.391360 tig0016833:+18806 Msa1359930:three_prime_UTR
CACACCATGTCTTACTTTGG+TGG 0.393906 tig0016833:-16370 None:intergenic
GCGGGAGAGGAGAGGGTCGC+CGG 0.399149 tig0016833:+14385 Msa1359930:five_prime_UTR
AATAAATACTAAACAACATA+TGG 0.399591 tig0016833:-18665 None:intergenic
AGAGGGTCGCCGGGAGAGAA+AGG 0.399773 tig0016833:+14395 Msa1359930:five_prime_UTR
TTTCTTCAAGGATTCATAGT+TGG 0.401438 tig0016833:-16176 None:intergenic
GAGAGAGAGGGTCGCGGGAG+AGG 0.406651 tig0016833:+14372 Msa1359930:five_prime_UTR
TGTTGCAGGAAACATTGGTT+TGG 0.423084 tig0016833:+15004 Msa1359930:intron
CAACCCGCCATAGTGTCGTT+GGG 0.431927 tig0016833:-18848 None:intergenic
CGACTAATTAGAATCATTCA+AGG 0.432404 tig0016833:-19221 None:intergenic
TTTCACACCATGTCTTACTT+TGG 0.439427 tig0016833:-16373 None:intergenic
ACCGTCAATACCTAAGGCTT+TGG 0.443243 tig0016833:+18167 Msa1359930:three_prime_UTR
AACATTGCTACTAATGAGAA+AGG 0.446582 tig0016833:-19152 None:intergenic
AGTAGTCCCCAACGACACTA+TGG 0.451740 tig0016833:+18841 Msa1359930:three_prime_UTR
TTAGGTATTGACGGTGTCAC+TGG 0.459042 tig0016833:-18159 None:intergenic
TACACTGGTTGGACTGAGGC+AGG 0.459434 tig0016833:+20009 Msa1359930:three_prime_UTR
AGTTTACTCACCAAAGCCTT+AGG 0.461179 tig0016833:-18177 None:intergenic
CCTTTGCTTCTAATGCAAAT+CGG 0.462785 tig0016833:-14459 None:intergenic
CAAATATGTGCCACTGATAG+AGG 0.468510 tig0016833:-18704 None:intergenic
CGGGAGAGGAGAGGGTCGCC+GGG 0.471331 tig0016833:+14386 Msa1359930:five_prime_UTR
AAACTAATTGGAACCAATGA+AGG 0.474797 tig0016833:-20111 None:intergenic
GGAGATTTAAGAAGATATGA+AGG 0.474849 tig0016833:+14840 Msa1359930:five_prime_UTR
CTTTGATAAATACTTTAGAA+AGG 0.476087 tig0016833:+20194 Msa1359930:three_prime_UTR
GAGGGTCGCGGGAGAGGAGA+GGG 0.478831 tig0016833:+14378 Msa1359930:five_prime_UTR
GAGGGTCGCCGGGAGAGAAA+GGG 0.483705 tig0016833:+14396 Msa1359930:five_prime_UTR
GAAGAAACAAGAAGAATTGG+AGG 0.484939 tig0016833:+14658 Msa1359930:five_prime_UTR
TGAGGCAGGTTTCGGCAAGA+TGG 0.486601 tig0016833:+20023 Msa1359930:three_prime_UTR
TGAAAGAGAGAGAGGGTCGC+GGG 0.486825 tig0016833:+14367 Msa1359930:five_prime_UTR
AGGCACGCAGTCTGTTACAC+TGG 0.491245 tig0016833:+19994 Msa1359930:three_prime_UTR
AACGACACTATGGCGGGTTG+TGG 0.491948 tig0016833:+18851 Msa1359930:three_prime_UTR
GGGGCTGGGTTTGCAATTGG+AGG 0.496777 tig0016833:+14636 Msa1359930:five_prime_UTR
CTGAAAGAGAGAGAGGGTCG+CGG 0.505347 tig0016833:+14366 Msa1359930:five_prime_UTR
CATGGCTTAAGCTTTGGTGC+AGG 0.507969 tig0016833:+17947 Msa1359930:CDS
CAGACTGCGTGCCTCTTCAA+TGG 0.510928 tig0016833:-19985 None:intergenic
GTACTTTCAGGCATATCAGT+TGG 0.514336 tig0016833:+17918 Msa1359930:intron
AATCGATGCTTTACTGAGGG+TGG 0.515061 tig0016833:+18448 Msa1359930:three_prime_UTR
ATCGGTGCAGATCGGAGTGT+TGG 0.515737 tig0016833:-14441 None:intergenic
CAAACCTGAAATCTAGGCGT+TGG 0.519246 tig0016833:+18812 Msa1359930:three_prime_UTR
ACTTCTGTTGCAGGAAACAT+TGG 0.523691 tig0016833:+14999 Msa1359930:intron
ATCGATGCTTTACTGAGGGT+GGG 0.525147 tig0016833:+18449 Msa1359930:three_prime_UTR
AGAGGGTCGCGGGAGAGGAG+AGG 0.525300 tig0016833:+14377 Msa1359930:five_prime_UTR
CTGAGGGTGGGTTTCTAGGG+AGG 0.526540 tig0016833:+18461 Msa1359930:three_prime_UTR
ACAAGGACAGCATGTGCTGC+AGG 0.526864 tig0016833:+19915 Msa1359930:three_prime_UTR
TCGATCTCAGTCAATTCCTC+AGG 0.527039 tig0016833:+17977 Msa1359930:CDS
ACCAAAGCCTTAGGTATTGA+CGG 0.527928 tig0016833:-18168 None:intergenic
GGCGGCGACCCTTTCTCTCC+CGG 0.533339 tig0016833:-14404 None:intergenic
GAATGAAAACTTAAGCAACT+TGG 0.534817 tig0016833:+19074 Msa1359930:three_prime_UTR
ACTACGTCTTGGTGGTCCAT+TGG 0.537769 tig0016833:+19736 Msa1359930:three_prime_UTR
GAGGCAGGTTTCGGCAAGAT+GGG 0.538244 tig0016833:+20024 Msa1359930:three_prime_UTR
ACAACCCGCCATAGTGTCGT+TGG 0.539304 tig0016833:-18849 None:intergenic
TGCAGTCAATTCTCTGTACA+AGG 0.540808 tig0016833:+19898 Msa1359930:intron
TGAAAACAGAAGAGAATGGA+TGG 0.542892 tig0016833:+16341 Msa1359930:CDS
GTGTTGGACGGCGAGGTCGA+CGG 0.546335 tig0016833:-14425 None:intergenic
GACACTATGGCGGGTTGTGG+TGG 0.546422 tig0016833:+18854 Msa1359930:three_prime_UTR
GAAAGAAGACTACGTCTTGG+TGG 0.549879 tig0016833:+19728 Msa1359930:three_prime_UTR
CCGATTTGCATTAGAAGCAA+AGG 0.550622 tig0016833:+14459 Msa1359930:five_prime_UTR
AATTATAAATGACCAAATCA+AGG 0.553980 tig0016833:+16198 Msa1359930:exon
TCATTTGACGTAAGAACAGC+AGG 0.562188 tig0016833:-19287 None:intergenic
TGTAATTGCGTCATATAATG+AGG 0.564697 tig0016833:+18951 Msa1359930:three_prime_UTR
ACATTGCTACTAATGAGAAA+GGG 0.566564 tig0016833:-19151 None:intergenic
TAAAATCGATGCTTTACTGA+GGG 0.567843 tig0016833:+18445 Msa1359930:three_prime_UTR
CATATCAGTTGGTCTTAACA+TGG 0.576117 tig0016833:+17929 Msa1359930:CDS
AAAACTTGGAACAGATTAGA+GGG 0.578050 tig0016833:+16047 Msa1359930:intron
AGAAGAGCTGAAAGAGAGAG+AGG 0.580586 tig0016833:+14359 Msa1359930:five_prime_UTR
AGTATTTATCAAAGCATCAA+AGG 0.582726 tig0016833:-20185 None:intergenic
AGAAAGAGCAACCATTGAAG+AGG 0.585732 tig0016833:+19974 Msa1359930:three_prime_UTR
TACTGCGTTTATAATGCATG+TGG 0.589164 tig0016833:+18550 Msa1359930:three_prime_UTR
AGTGACACCGTCAATACCTA+AGG 0.590553 tig0016833:+18161 Msa1359930:exon
TTTGAAAGAAGACTACGTCT+TGG 0.593120 tig0016833:+19725 Msa1359930:three_prime_UTR
ACGCAGTCTGTTACACTGGT+TGG 0.593852 tig0016833:+19998 Msa1359930:three_prime_UTR
ATAATTATAGCAGAAATGGC+AGG 0.601487 tig0016833:-18916 None:intergenic
GTCCCCAACGACACTATGGC+GGG 0.601744 tig0016833:+18845 Msa1359930:three_prime_UTR
CTATTAAGCAGTCAAGACAA+TGG 0.604644 tig0016833:+18133 Msa1359930:CDS
AAAAGGGTGAAGCATATCAA+AGG 0.605182 tig0016833:+16460 Msa1359930:CDS
TGATAGAGGGTGGCTAAGAG+AGG 0.607815 tig0016833:-18690 None:intergenic
TCTTGGTGGTCCATTGGTGA+AGG 0.608383 tig0016833:+19742 Msa1359930:three_prime_UTR
GGAATTGACTGAGATCGAGA+TGG 0.610281 tig0016833:-17972 None:intergenic
TAATGCAAATCGGTGCAGAT+CGG 0.610433 tig0016833:-14449 None:intergenic
AGTTCTGTTATGGTAAATGG+CGG 0.611189 tig0016833:+18886 Msa1359930:three_prime_UTR
GATCGGAGTGTTGGACGGCG+AGG 0.614383 tig0016833:-14432 None:intergenic
TCTTAGCCACCCTCTATCAG+TGG 0.615304 tig0016833:+18694 Msa1359930:three_prime_UTR
AGGTTTCGGTCAAAACCCAA+AGG 0.617561 tig0016833:+18097 Msa1359930:intron
GAAGGAAAACATCGCAACCA+TGG 0.618992 tig0016833:+19760 Msa1359930:three_prime_UTR
TCGCAACCATGGTTCTTGAG+AGG 0.620117 tig0016833:+19771 Msa1359930:three_prime_UTR
GTGCAGATCGGAGTGTTGGA+CGG 0.620791 tig0016833:-14437 None:intergenic
GATAGAGGGTGGCTAAGAGA+GGG 0.629502 tig0016833:-18689 None:intergenic
AACCCGCCATAGTGTCGTTG+GGG 0.631984 tig0016833:-18847 None:intergenic
TTAAAATCGATGCTTTACTG+AGG 0.634048 tig0016833:+18444 Msa1359930:three_prime_UTR
GAAGAGCTGAAAGAGAGAGA+GGG 0.635681 tig0016833:+14360 Msa1359930:five_prime_UTR
CTCTAACCTCTCAAGAACCA+TGG 0.655626 tig0016833:-19777 None:intergenic
CAAGGACAGCATGTGCTGCA+GGG 0.666583 tig0016833:+19916 Msa1359930:three_prime_UTR
AAATATGTGCCACTGATAGA+GGG 0.668149 tig0016833:-18703 None:intergenic
CTGTTACACTGGTTGGACTG+AGG 0.672284 tig0016833:+20005 Msa1359930:three_prime_UTR
TTGGACGGCGAGGTCGACGG+CGG 0.673722 tig0016833:-14422 None:intergenic
AAGCTTAATTGAAAGTATGG+GGG 0.683305 tig0016833:+14617 Msa1359930:intron
TCAGCTTACCTTAATCTCAG+CGG 0.688887 tig0016833:-19312 None:intergenic
AGTCCCCAACGACACTATGG+CGG 0.690081 tig0016833:+18844 Msa1359930:three_prime_UTR
TATGTGCCACTGATAGAGGG+TGG 0.701153 tig0016833:-18700 None:intergenic
TGTGCCACCAAAGTAAGACA+TGG 0.701959 tig0016833:+16366 Msa1359930:CDS
GGACAGCATGTGCTGCAGGG+TGG 0.776953 tig0016833:+19919 Msa1359930:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATAATTATGATCATTT+TGG + tig0016833:15485-15504 Msa1359930:intron 10.0%
!!! TTTGATTATTGATTTTTTAT+CGG + tig0016833:16814-16833 Msa1359930:intron 10.0%
!!! GAAGATAATTTATTTTTTTT+TGG + tig0016833:17089-17108 Msa1359930:intron 10.0%
!!! TATCATTCTTTTAAATATAA+TGG + tig0016833:18029-18048 Msa1359930:intron 10.0%
!!! TTTTTTTTTTTTAAGTTTGT+TGG - tig0016833:19053-19072 None:intergenic 10.0%
!! TTCATTAAGAAATTGAAATT+GGG - tig0016833:14555-14574 None:intergenic 15.0%
!! AATTTCAATTTCTTAATGAA+GGG + tig0016833:14555-14574 Msa1359930:intron 15.0%
!!! AATTTAATGTTGATGATAAT+TGG + tig0016833:14883-14902 Msa1359930:intron 15.0%
!!! TTAAATGAGGTTTTATTATT+TGG + tig0016833:15716-15735 Msa1359930:intron 15.0%
!!! TTCTGAATAATATTTGATTT+TGG + tig0016833:15924-15943 Msa1359930:intron 15.0%
!!! ATAATATTTGATTTTGGTTT+TGG + tig0016833:15930-15949 Msa1359930:intron 15.0%
!! ACAATTTCAAATTCAATATA+TGG + tig0016833:16114-16133 Msa1359930:five_prime_UTR 15.0%
!! AATCAAACAAATTGATATTA+AGG - tig0016833:16764-16783 None:intergenic 15.0%
!!! ATATTTTGTTAATTGCTATA+TGG + tig0016833:17387-17406 Msa1359930:intron 15.0%
!!! TACATTTGATTTTATTCTTT+AGG + tig0016833:17732-17751 Msa1359930:intron 15.0%
!!! TAATTTTAAATTTATGTGCA+GGG - tig0016833:17879-17898 None:intergenic 15.0%
!! AATAAATACTAAACAACATA+TGG - tig0016833:18668-18687 None:intergenic 15.0%
!! AATGAAACAATAAAAAAAGA+GGG - tig0016833:18742-18761 None:intergenic 15.0%
!! TAATGAAACAATAAAAAAAG+AGG - tig0016833:18743-18762 None:intergenic 15.0%
!!! CTTTTTTTATTCTAAATTTG+TGG - tig0016833:19535-19554 None:intergenic 15.0%
!! TAAAACAAAATTAATCTTGT+AGG - tig0016833:19621-19640 None:intergenic 15.0%
!! ATAATTAAGATGAAACTAAT+TGG - tig0016833:20126-20145 None:intergenic 15.0%
!! TCATTAAGAAATTGAAATTG+GGG - tig0016833:14554-14573 None:intergenic 20.0%
!! CTTCATTAAGAAATTGAAAT+TGG - tig0016833:14556-14575 None:intergenic 20.0%
!! CAATTTCAATTTCTTAATGA+AGG + tig0016833:14554-14573 Msa1359930:intron 20.0%
!!! TTGTTGTTCTTAGAATAAAA+AGG + tig0016833:14819-14838 Msa1359930:intron 20.0%
!!! ACTGTACTGTTTTATATATA+AGG + tig0016833:14949-14968 Msa1359930:intron 20.0%
!!! TGAGTAAATTTTTGTAAGTT+TGG + tig0016833:15058-15077 Msa1359930:intron 20.0%
!!! GTGTTTTATAAGGTTTTTTT+TGG + tig0016833:15181-15200 Msa1359930:intron 20.0%
!! AAATGAAGTATACTTCATAT+TGG - tig0016833:15338-15357 None:intergenic 20.0%
!!! GTTAAATTTTCTGGATAAAA+AGG - tig0016833:15438-15457 None:intergenic 20.0%
!! TGAATTATATGCAATGATTA+TGG + tig0016833:15890-15909 Msa1359930:intron 20.0%
!! ATAAATTCAAACAACAAAAG+AGG - tig0016833:15965-15984 None:intergenic 20.0%
!!! GTCATTTATAATTTTCTTCA+AGG - tig0016833:16191-16210 None:intergenic 20.0%
!! AATTATAAATGACCAAATCA+AGG + tig0016833:16198-16217 Msa1359930:exon 20.0%
!!! GGTTAGTTATAGATTAATAT+TGG + tig0016833:16219-16238 Msa1359930:intron 20.0%
!! ATATATTGAATGCATAATGA+AGG - tig0016833:16534-16553 None:intergenic 20.0%
!!! AAAAGCATAAACTATTACAA+AGG - tig0016833:16582-16601 None:intergenic 20.0%
!!! TTTGGATGATTTTGTATTAT+CGG + tig0016833:16882-16901 Msa1359930:intron 20.0%
!!! TGAATATGAATTTGGTTTTA+TGG + tig0016833:16953-16972 Msa1359930:intron 20.0%
!!! GAATATGAATTTGGTTTTAT+GGG + tig0016833:16954-16973 Msa1359930:intron 20.0%
!!! TTTTTTGATGTATGGTTTTA+TGG + tig0016833:16983-17002 Msa1359930:intron 20.0%
!!! TTTTTGATGTATGGTTTTAT+GGG + tig0016833:16984-17003 Msa1359930:intron 20.0%
!!! ATTTATTTTTTTTTGGTAGC+TGG + tig0016833:17096-17115 Msa1359930:intron 20.0%
!!! ATTTTGAATTCTGTGTTTTT+AGG + tig0016833:17120-17139 Msa1359930:intron 20.0%
!!! TTTAGGATTTGTTTAGTTTT+AGG + tig0016833:17137-17156 Msa1359930:intron 20.0%
!! TAGGTATCAATCATATAAAA+TGG + tig0016833:17156-17175 Msa1359930:intron 20.0%
!! ATCAATCATATAAAATGGTT+AGG + tig0016833:17161-17180 Msa1359930:intron 20.0%
!! TCAATCATATAAAATGGTTA+GGG + tig0016833:17162-17181 Msa1359930:intron 20.0%
!! ATCATAAAGTAATTGAAATC+TGG - tig0016833:17262-17281 None:intergenic 20.0%
!! TTCAATTACTTTATGATGAT+AGG + tig0016833:17265-17284 Msa1359930:intron 20.0%
!!! ATATCTGAAATCATGATTTT+TGG - tig0016833:17506-17525 None:intergenic 20.0%
!!! ACATGATTTTTTTAACACAA+TGG + tig0016833:17560-17579 Msa1359930:intron 20.0%
!! AATTTCTATCATTATATACC+AGG - tig0016833:17670-17689 None:intergenic 20.0%
!!! CTAATTTTAAATTTATGTGC+AGG - tig0016833:17880-17899 None:intergenic 20.0%
!!! ATGACCTTGTTTAAATAAAT+AGG - tig0016833:19844-19863 None:intergenic 20.0%
!!! AATTGTAATTTGTGCATTAT+TGG + tig0016833:20086-20105 Msa1359930:three_prime_UTR 20.0%
!!! AATTATTATGTTGTTTTCCT+TGG + tig0016833:20140-20159 Msa1359930:three_prime_UTR 20.0%
!!! CTTTGATAAATACTTTAGAA+AGG + tig0016833:20194-20213 Msa1359930:three_prime_UTR 20.0%
! ATTAGAAGCAAAGGAAATTA+AGG + tig0016833:14468-14487 Msa1359930:five_prime_UTR 25.0%
! AGAAAGCTTAATTGAAAGTA+TGG + tig0016833:14614-14633 Msa1359930:intron 25.0%
!! GAAAGCTTAATTGAAAGTAT+GGG + tig0016833:14615-14634 Msa1359930:intron 25.0%
!! AAAGCTTAATTGAAAGTATG+GGG + tig0016833:14616-14635 Msa1359930:intron 25.0%
!! GTAAATTTTTGTACAAGTGA+TGG + tig0016833:14680-14699 Msa1359930:intron 25.0%
! ACACATGAGATATATCAATA+TGG - tig0016833:14763-14782 None:intergenic 25.0%
!!! TATATAAGGTGATTTTGATC+TGG + tig0016833:14963-14982 Msa1359930:intron 25.0%
! ACATTCAATCCAAAGAATTA+TGG - tig0016833:15032-15051 None:intergenic 25.0%
! ATTTCTGTAAAATTTGAGTG+TGG + tig0016833:15087-15106 Msa1359930:intron 25.0%
!!! CAAGTTTTGGTTAAATTTTC+TGG - tig0016833:15447-15466 None:intergenic 25.0%
!!! AATCTGTTTGTTTTTGTGTT+TGG + tig0016833:15993-16012 Msa1359930:intron 25.0%
! TTGTTGAAATGTTGAAAACT+TGG + tig0016833:16033-16052 Msa1359930:intron 25.0%
!! GGAGTTTTTACTTGAAAAAT+TGG + tig0016833:16068-16087 Msa1359930:five_prime_UTR 25.0%
!!! TTCTGGTAATGATTTTGTAA+AGG + tig0016833:16144-16163 Msa1359930:five_prime_UTR 25.0%
! ATCTATAACTAACCTTGATT+TGG - tig0016833:16213-16232 None:intergenic 25.0%
! TTAGCTTATTCATGTCTTAA+AGG + tig0016833:16255-16274 Msa1359930:intron 25.0%
! AAAGAACTAGAAGACATAAA+TGG + tig0016833:16393-16412 Msa1359930:CDS 25.0%
! ACAGAGAATCATAAGAAAAA+GGG + tig0016833:16444-16463 Msa1359930:CDS 25.0%
! ATTGAAAAATTTGCATCATG+AGG + tig0016833:16491-16510 Msa1359930:CDS 25.0%
! GGAAAATGATAACTATTACA+CGG - tig0016833:16561-16580 None:intergenic 25.0%
! AGTCTATGTTAATTATACAC+TGG + tig0016833:16629-16648 Msa1359930:intron 25.0%
! TTGAAGTAATTAAGCAACTT+TGG - tig0016833:16683-16702 None:intergenic 25.0%
!!! TTTTTTTTGAAATTTTGCGC+TGG + tig0016833:16789-16808 Msa1359930:intron 25.0%
!!! TTTTTTTGAAATTTTGCGCT+GGG + tig0016833:16790-16809 Msa1359930:intron 25.0%
!!! GATTATTGATTTTTTATCGG+TGG + tig0016833:16817-16836 Msa1359930:intron 25.0%
!! AAAATTGAGAATTGGTTTAG+TGG + tig0016833:16842-16861 Msa1359930:intron 25.0%
!! AAATTGAGAATTGGTTTAGT+GGG + tig0016833:16843-16862 Msa1359930:intron 25.0%
!! TTTTTGAATGGCAAATATGT+TGG + tig0016833:16928-16947 Msa1359930:intron 25.0%
!!! TGTTGGTTTGAATATGAATT+TGG + tig0016833:16945-16964 Msa1359930:intron 25.0%
!!! GGTTTCTTTTTTTTGATGTA+TGG + tig0016833:16975-16994 Msa1359930:intron 25.0%
! CAATCATATAAAATGGTTAG+GGG + tig0016833:17163-17182 Msa1359930:intron 25.0%
! AAGAAAGATATAGAGATTAG+TGG + tig0016833:17329-17348 Msa1359930:intron 25.0%
! TATCTTCCAAAACTATAGAA+AGG + tig0016833:17420-17439 Msa1359930:intron 25.0%
!! TGTTGTTGTTGAGTTTAAAA+CGG - tig0016833:17457-17476 None:intergenic 25.0%
!!! TTGGTTGATGTTATTTTTCA+TGG - tig0016833:17487-17506 None:intergenic 25.0%
! AAGAAGTAATAACCAGTATA+TGG - tig0016833:17645-17664 None:intergenic 25.0%
!!! TTTTCCATAAAAAGCATCTA+AGG - tig0016833:17697-17716 None:intergenic 25.0%
!! CTTTTTATGGAAAATATCGT+CGG + tig0016833:17703-17722 Msa1359930:intron 25.0%
!!! ATATAGCATTGATATAAGCA+AGG - tig0016833:17783-17802 None:intergenic 25.0%
! ATAATGTGTATATCCATTGT+AGG + tig0016833:18077-18096 Msa1359930:intron 25.0%
! TTGCTTCTTGCTTAAATTTA+TGG + tig0016833:18628-18647 Msa1359930:three_prime_UTR 25.0%
! AACAATAAAAAAAGAGGGAT+GGG - tig0016833:18737-18756 None:intergenic 25.0%
! AAACAATAAAAAAAGAGGGA+TGG - tig0016833:18738-18757 None:intergenic 25.0%
! TTAAGTTCTGTTATGGTAAA+TGG + tig0016833:18883-18902 Msa1359930:three_prime_UTR 25.0%
! TGACATAATTATAGCAGAAA+TGG - tig0016833:18923-18942 None:intergenic 25.0%
! TCTTTATGCTTGAAGAATAT+TGG + tig0016833:18986-19005 Msa1359930:three_prime_UTR 25.0%
! ATCATAATTCAAAACCATGA+CGG - tig0016833:19353-19372 None:intergenic 25.0%
! CATGCAAAGAATAAATCATA+TGG - tig0016833:19504-19523 None:intergenic 25.0%
!! AAAAAAGTATGTTGAAAGCT+TGG + tig0016833:19548-19567 Msa1359930:intron 25.0%
!! CCTTGTTTAAATAAATAGGT+TGG - tig0016833:19840-19859 None:intergenic 25.0%
! CCAACCTATTTATTTAAACA+AGG + tig0016833:19837-19856 Msa1359930:intron 25.0%
!! AGTATTTATCAAAGCATCAA+AGG - tig0016833:20188-20207 None:intergenic 25.0%
! AAGCTTAATTGAAAGTATGG+GGG + tig0016833:14617-14636 Msa1359930:intron 30.0%
GGTAAATCATTTCTGTTTGA+TGG + tig0016833:14701-14720 Msa1359930:intron 30.0%
GGAGATTTAAGAAGATATGA+AGG + tig0016833:14840-14859 Msa1359930:five_prime_UTR 30.0%
GTTGTTTAAGCACCTTAAAA+TGG + tig0016833:14914-14933 Msa1359930:intron 30.0%
! GTCACGAAAAATCCATTTTA+AGG - tig0016833:14929-14948 None:intergenic 30.0%
TTCTTTGGATTGAATGTTAG+AGG + tig0016833:15035-15054 Msa1359930:five_prime_UTR 30.0%
!! TAATCATGAAACTAGCTCTA+TGG + tig0016833:15125-15144 Msa1359930:intron 30.0%
!! AATCATGAAACTAGCTCTAT+GGG + tig0016833:15126-15145 Msa1359930:intron 30.0%
! TCTCTGTTGTGTGTTTTATA+AGG + tig0016833:15171-15190 Msa1359930:intron 30.0%
CAGCATTGTATATGCATAAA+AGG - tig0016833:15671-15690 None:intergenic 30.0%
TTAGTTGTGTGTCTTAAATG+AGG + tig0016833:15703-15722 Msa1359930:intron 30.0%
!!! TGGAATTGTTTTGAAACCAT+CGG - tig0016833:15776-15795 None:intergenic 30.0%
! AGAATGGTGATGATAAGTAT+TGG - tig0016833:15796-15815 None:intergenic 30.0%
ATTCCTACAAGTTTGAAGAA+TGG - tig0016833:15812-15831 None:intergenic 30.0%
!!! ATTTGATTTTGGTTTTGGCT+TGG + tig0016833:15935-15954 Msa1359930:intron 30.0%
AAAACTTGGAACAGATTAGA+GGG + tig0016833:16047-16066 Msa1359930:intron 30.0%
TTTCTTCAAGGATTCATAGT+TGG - tig0016833:16179-16198 None:intergenic 30.0%
!! CTTTTGAAAACAGAAGAGAA+TGG + tig0016833:16337-16356 Msa1359930:CDS 30.0%
GACAGAGAATCATAAGAAAA+AGG + tig0016833:16443-16462 Msa1359930:CDS 30.0%
TTAACATAGACTCATAGCTA+TGG - tig0016833:16621-16640 None:intergenic 30.0%
TTATACACTGGAGACTATAT+AGG + tig0016833:16641-16660 Msa1359930:intron 30.0%
! TGATTTTGTATTATCGGTGT+TGG + tig0016833:16888-16907 Msa1359930:intron 30.0%
TTCGTCAGATTTGATGAAAT+TGG + tig0016833:17028-17047 Msa1359930:intron 30.0%
TCGTCAGATTTGATGAAATT+GGG + tig0016833:17029-17048 Msa1359930:intron 30.0%
! TCTCTATGAATCAGTTGATA+TGG + tig0016833:17214-17233 Msa1359930:intron 30.0%
! GGAATTTGTTCAGATTTGTT+TGG + tig0016833:17350-17369 Msa1359930:intron 30.0%
! GAAGTTCCTTTCTATAGTTT+TGG - tig0016833:17429-17448 None:intergenic 30.0%
! GTTGTTGTTGAGTTTAAAAC+GGG - tig0016833:17456-17475 None:intergenic 30.0%
!!! GTTGATGTTATTTTTCATGG+AGG - tig0016833:17484-17503 None:intergenic 30.0%
! TTTTTGTCTGCCATTCTTAT+AGG + tig0016833:17605-17624 Msa1359930:intron 30.0%
! TGGTTTGTAAATCCATATAC+TGG + tig0016833:17630-17649 Msa1359930:intron 30.0%
!! ATGTCCTTAGATGCTTTTTA+TGG + tig0016833:17690-17709 Msa1359930:intron 30.0%
GAATTTGATGCAGAAATAGT+GGG - tig0016833:17845-17864 None:intergenic 30.0%
AGAATTTGATGCAGAAATAG+TGG - tig0016833:17846-17865 None:intergenic 30.0%
TAAAATTAGTTACTTCCCTC+TGG + tig0016833:17891-17910 Msa1359930:intron 30.0%
AAAATTAGTTACTTCCCTCT+GGG + tig0016833:17892-17911 Msa1359930:intron 30.0%
TGGATATACACATTATTAGC+TGG - tig0016833:18073-18092 None:intergenic 30.0%
TGTATATCCATTGTAGGTTT+CGG + tig0016833:18083-18102 Msa1359930:intron 30.0%
GTTGTTTGAATTGCGAAAAT+TGG + tig0016833:18278-18297 Msa1359930:intron 30.0%
! TCCATTTCTTTTTCTTGCTA+TGG + tig0016833:18361-18380 Msa1359930:intron 30.0%
TTAAAATCGATGCTTTACTG+AGG + tig0016833:18444-18463 Msa1359930:three_prime_UTR 30.0%
TAAAATCGATGCTTTACTGA+GGG + tig0016833:18445-18464 Msa1359930:three_prime_UTR 30.0%
CATAATCAAACCTGAAATCT+AGG + tig0016833:18806-18825 Msa1359930:three_prime_UTR 30.0%
!!! GCAGATTTTAAGTTCTGTTA+TGG + tig0016833:18876-18895 Msa1359930:three_prime_UTR 30.0%
ATAATTATAGCAGAAATGGC+AGG - tig0016833:18919-18938 None:intergenic 30.0%
TGTAATTGCGTCATATAATG+AGG + tig0016833:18951-18970 Msa1359930:three_prime_UTR 30.0%
TATTTGACATGACTGCTATT+TGG + tig0016833:19017-19036 Msa1359930:three_prime_UTR 30.0%
GAATGAAAACTTAAGCAACT+TGG + tig0016833:19074-19093 Msa1359930:three_prime_UTR 30.0%
ACATTGCTACTAATGAGAAA+GGG - tig0016833:19154-19173 None:intergenic 30.0%
AACATTGCTACTAATGAGAA+AGG - tig0016833:19155-19174 None:intergenic 30.0%
TCATATTGAGTTCTTGATCT+TGG + tig0016833:19177-19196 Msa1359930:three_prime_UTR 30.0%
GTTCTTGATCTTGGATAAAT+AGG + tig0016833:19186-19205 Msa1359930:three_prime_UTR 30.0%
CGACTAATTAGAATCATTCA+AGG - tig0016833:19224-19243 None:intergenic 30.0%
GTTGCGAAAGAGTTAAATAA+TGG + tig0016833:19396-19415 Msa1359930:intron 30.0%
! TAAGCTTTGATTATGTCTCT+TGG + tig0016833:19639-19658 Msa1359930:intron 30.0%
GTAGTCTTCTTTCAAATGTA+TGG - tig0016833:19721-19740 None:intergenic 30.0%
! GCAACGTGCTTTTATAATTT+TGG + tig0016833:20054-20073 Msa1359930:three_prime_UTR 30.0%
AAACTAATTGGAACCAATGA+AGG - tig0016833:20114-20133 None:intergenic 30.0%
! ATATTTTGTTCATGAGACCA+AGG - tig0016833:20160-20179 None:intergenic 30.0%
CCTTTGCTTCTAATGCAAAT+CGG - tig0016833:14462-14481 None:intergenic 35.0%
TTGGTTGAGTAAGAAAAGAG+AGG - tig0016833:14514-14533 None:intergenic 35.0%
ATTGAAATTGGGGCTGAAAA+GGG - tig0016833:14544-14563 None:intergenic 35.0%
AATTGAAATTGGGGCTGAAA+AGG - tig0016833:14545-14564 None:intergenic 35.0%
GAGGAAGAAACAAGAAGAAT+TGG + tig0016833:14655-14674 Msa1359930:five_prime_UTR 35.0%
GAAGAAACAAGAAGAATTGG+AGG + tig0016833:14658-14677 Msa1359930:five_prime_UTR 35.0%
ATGATTACTACTTCTGTTGC+AGG + tig0016833:14990-15009 Msa1359930:intron 35.0%
! GGTTTGGTTCCATAATTCTT+TGG + tig0016833:15020-15039 Msa1359930:five_prime_UTR 35.0%
!! TCAACTACAGCTTCAAGTTT+TGG - tig0016833:15460-15479 None:intergenic 35.0%
AAAATTATGCAGCTGCAAGT+GGG + tig0016833:15546-15565 Msa1359930:intron 35.0%
TCACCATTCTTCAAACTTGT+AGG + tig0016833:15806-15825 Msa1359930:intron 35.0%
AAACTTGTAGGAATGATGAG+TGG + tig0016833:15818-15837 Msa1359930:intron 35.0%
TGATGAGTGGATCATAAAGA+AGG + tig0016833:15831-15850 Msa1359930:intron 35.0%
GAAAACTTGGAACAGATTAG+AGG + tig0016833:16046-16065 Msa1359930:intron 35.0%
CAATATATGGAAAGAGCTTC+TGG + tig0016833:16127-16146 Msa1359930:five_prime_UTR 35.0%
TGAAAACAGAAGAGAATGGA+TGG + tig0016833:16341-16360 Msa1359930:CDS 35.0%
TTTCACACCATGTCTTACTT+TGG - tig0016833:16376-16395 None:intergenic 35.0%
AAAAGGGTGAAGCATATCAA+AGG + tig0016833:16460-16479 Msa1359930:CDS 35.0%
GAAAAATTTGCATCATGAGG+AGG + tig0016833:16494-16513 Msa1359930:CDS 35.0%
CGGTGGAAAAAATTGAGAAT+TGG + tig0016833:16834-16853 Msa1359930:intron 35.0%
TATGGGTTTCATGTGTTTGT+TGG + tig0016833:17001-17020 Msa1359930:intron 35.0%
GAAATTGGGTGTTCTTATTG+AGG + tig0016833:17043-17062 Msa1359930:intron 35.0%
!!! GATGTTATTTTTCATGGAGG+TGG - tig0016833:17481-17500 None:intergenic 35.0%
ACAAACCATGCCTATAAGAA+TGG - tig0016833:17618-17637 None:intergenic 35.0%
! CTGGTTATTACTTCTTTTCC+TGG + tig0016833:17649-17668 Msa1359930:intron 35.0%
!! CATATCAGTTGGTCTTAACA+TGG + tig0016833:17929-17948 Msa1359930:CDS 35.0%
TCTTAACATGGCTTAAGCTT+TGG + tig0016833:17941-17960 Msa1359930:CDS 35.0%
AAGAATGATACAGAAAGCGA+CGG - tig0016833:18019-18038 None:intergenic 35.0%
CTATTAAGCAGTCAAGACAA+TGG + tig0016833:18133-18152 Msa1359930:CDS 35.0%
!!! GTCTGTTTTAGCTTTTACCA+GGG + tig0016833:18300-18319 Msa1359930:intron 35.0%
!!! TTTAGCTTTTACCAGGGTAT+AGG + tig0016833:18306-18325 Msa1359930:intron 35.0%
GCCATAGCAAGAAAAAGAAA+TGG - tig0016833:18365-18384 None:intergenic 35.0%
TACTGCGTTTATAATGCATG+TGG + tig0016833:18550-18569 Msa1359930:three_prime_UTR 35.0%
! AAATATGTGCCACTGATAGA+GGG - tig0016833:18706-18725 None:intergenic 35.0%
AGTTCTGTTATGGTAAATGG+CGG + tig0016833:18886-18905 Msa1359930:three_prime_UTR 35.0%
TATTTAACTCTTTCGCAACG+TGG - tig0016833:19395-19414 None:intergenic 35.0%
!! GTATTTGTTTTTCCTTGTGC+AGG + tig0016833:19686-19705 Msa1359930:intron 35.0%
TTTGAAAGAAGACTACGTCT+TGG + tig0016833:19725-19744 Msa1359930:three_prime_UTR 35.0%
!! TGCATTATTGGTTCCTTCAT+TGG + tig0016833:20098-20117 Msa1359930:three_prime_UTR 35.0%
TAATGCAAATCGGTGCAGAT+CGG - tig0016833:14452-14471 None:intergenic 40.0%
! CCGATTTGCATTAGAAGCAA+AGG + tig0016833:14459-14478 Msa1359930:five_prime_UTR 40.0%
! TTAATTGAAAGTATGGGGGC+TGG + tig0016833:14621-14640 Msa1359930:intron 40.0%
! TAATTGAAAGTATGGGGGCT+GGG + tig0016833:14622-14641 Msa1359930:intron 40.0%
ACTTCTGTTGCAGGAAACAT+TGG + tig0016833:14999-15018 Msa1359930:intron 40.0%
! TGTTGCAGGAAACATTGGTT+TGG + tig0016833:15004-15023 Msa1359930:intron 40.0%
GAAAATTATGCAGCTGCAAG+TGG + tig0016833:15545-15564 Msa1359930:intron 40.0%
! TGAGAATTGGTTTAGTGGGT+CGG + tig0016833:16847-16866 Msa1359930:intron 40.0%
!! GGTCGGTGAAAGTTTGTTTT+TGG + tig0016833:16864-16883 Msa1359930:intron 40.0%
GTACTTTCAGGCATATCAGT+TGG + tig0016833:17918-17937 Msa1359930:intron 40.0%
!! GTTTTGACCGAAACCTACAA+TGG - tig0016833:18093-18112 None:intergenic 40.0%
AGCAAGTTCTTCAAGCCTTT+GGG - tig0016833:18115-18134 None:intergenic 40.0%
TAGCAAGTTCTTCAAGCCTT+TGG - tig0016833:18116-18135 None:intergenic 40.0%
!! ACCAAAGCCTTAGGTATTGA+CGG - tig0016833:18171-18190 None:intergenic 40.0%
AGTTTACTCACCAAAGCCTT+AGG - tig0016833:18180-18199 None:intergenic 40.0%
!!! GGTCTGTTTTAGCTTTTACC+AGG + tig0016833:18299-18318 Msa1359930:intron 40.0%
TGCTATGGCGCGTTATTTAA+TGG + tig0016833:18376-18395 Msa1359930:intron 40.0%
! CAAATATGTGCCACTGATAG+AGG - tig0016833:18707-18726 None:intergenic 40.0%
CTCTATCAGTGGCACATATT+TGG + tig0016833:18705-18724 Msa1359930:three_prime_UTR 40.0%
TCATTTGACGTAAGAACAGC+AGG - tig0016833:19290-19309 None:intergenic 40.0%
AAATGATGCCGCTGAGATTA+AGG + tig0016833:19304-19323 Msa1359930:three_prime_UTR 40.0%
TCAGCTTACCTTAATCTCAG+CGG - tig0016833:19315-19334 None:intergenic 40.0%
TGAATTATGATCACAGCCAC+AGG + tig0016833:19362-19381 Msa1359930:intron 40.0%
! TGTTTTTCCTTGTGCAGGAA+CGG + tig0016833:19691-19710 Msa1359930:intron 40.0%
TGCAGTCAATTCTCTGTACA+AGG + tig0016833:19898-19917 Msa1359930:intron 40.0%
AGAAAGAGCAACCATTGAAG+AGG + tig0016833:19974-19993 Msa1359930:three_prime_UTR 40.0%
AGAAGAGCTGAAAGAGAGAG+AGG + tig0016833:14359-14378 Msa1359930:five_prime_UTR 45.0%
GAAGAGCTGAAAGAGAGAGA+GGG + tig0016833:14360-14379 Msa1359930:five_prime_UTR 45.0%
ATTGGGGCTGAAAAGGGTTA+GGG - tig0016833:14538-14557 None:intergenic 45.0%
AATTGGGGCTGAAAAGGGTT+AGG - tig0016833:14539-14558 None:intergenic 45.0%
TGCAATAGCAGATGTGTTGC+AGG + tig0016833:15211-15230 Msa1359930:intron 45.0%
ATAGCAGATGTGTTGCAGGA+AGG + tig0016833:15215-15234 Msa1359930:intron 45.0%
TCTGCAGTCGAAATTGTGAC+TGG + tig0016833:15619-15638 Msa1359930:intron 45.0%
TGTGCCACCAAAGTAAGACA+TGG + tig0016833:16366-16385 Msa1359930:CDS 45.0%
CACACCATGTCTTACTTTGG+TGG - tig0016833:16373-16392 None:intergenic 45.0%
GTCTGCCATTCTTATAGGCA+TGG + tig0016833:17610-17629 Msa1359930:intron 45.0%
GGAATTGACTGAGATCGAGA+TGG - tig0016833:17975-17994 None:intergenic 45.0%
TCGATCTCAGTCAATTCCTC+AGG + tig0016833:17977-17996 Msa1359930:CDS 45.0%
AGGTTTCGGTCAAAACCCAA+AGG + tig0016833:18097-18116 Msa1359930:intron 45.0%
!! TTAGGTATTGACGGTGTCAC+TGG - tig0016833:18162-18181 None:intergenic 45.0%
AGTGACACCGTCAATACCTA+AGG + tig0016833:18161-18180 Msa1359930:exon 45.0%
ACCGTCAATACCTAAGGCTT+TGG + tig0016833:18167-18186 Msa1359930:three_prime_UTR 45.0%
! AATTAGCCGACTCCACTTAG+TGG + tig0016833:18238-18257 Msa1359930:intron 45.0%
! ATTAGCCGACTCCACTTAGT+GGG + tig0016833:18239-18258 Msa1359930:intron 45.0%
CTTATCCCACTAAGTGGAGT+CGG - tig0016833:18247-18266 None:intergenic 45.0%
! CCAAGTCTTATCCCACTAAG+TGG - tig0016833:18253-18272 None:intergenic 45.0%
CCACTTAGTGGGATAAGACT+TGG + tig0016833:18250-18269 Msa1359930:intron 45.0%
CTTCAGGAAATCCTATACCC+TGG - tig0016833:18320-18339 None:intergenic 45.0%
GGGTATAGGATTTCCTGAAG+TGG + tig0016833:18320-18339 Msa1359930:intron 45.0%
!! TCCTGAAGTGGTTTTGCACT+TGG + tig0016833:18332-18351 Msa1359930:intron 45.0%
!! CCTGAAGTGGTTTTGCACTT+GGG + tig0016833:18333-18352 Msa1359930:intron 45.0%
AATCGATGCTTTACTGAGGG+TGG + tig0016833:18448-18467 Msa1359930:three_prime_UTR 45.0%
ATCGATGCTTTACTGAGGGT+GGG + tig0016833:18449-18468 Msa1359930:three_prime_UTR 45.0%
! TTTACTGAGGGTGGGTTTCT+AGG + tig0016833:18457-18476 Msa1359930:three_prime_UTR 45.0%
! TTACTGAGGGTGGGTTTCTA+GGG + tig0016833:18458-18477 Msa1359930:three_prime_UTR 45.0%
CAAACCTGAAATCTAGGCGT+TGG + tig0016833:18812-18831 Msa1359930:three_prime_UTR 45.0%
GAAACCAACGCCTAGATTTC+AGG - tig0016833:18819-18838 None:intergenic 45.0%
! GTTTTTCCTTGTGCAGGAAC+GGG + tig0016833:19692-19711 Msa1359930:intron 45.0%
! TTTTTCCTTGTGCAGGAACG+GGG + tig0016833:19693-19712 Msa1359930:intron 45.0%
GAAAGAAGACTACGTCTTGG+TGG + tig0016833:19728-19747 Msa1359930:three_prime_UTR 45.0%
! GCGATGTTTTCCTTCACCAA+TGG - tig0016833:19755-19774 None:intergenic 45.0%
GAAGGAAAACATCGCAACCA+TGG + tig0016833:19760-19779 Msa1359930:three_prime_UTR 45.0%
CTCTAACCTCTCAAGAACCA+TGG - tig0016833:19780-19799 None:intergenic 45.0%
TTTCGGCAAGATGGGTGTTT+CGG + tig0016833:20032-20051 Msa1359930:three_prime_UTR 45.0%
!!! ATATTTTTTATTTTTTTGAA+TGG + tig0016833:16916-16935 Msa1359930:intron 5.0%
GGCTGAAAAGGGTTAGGGTT+TGG - tig0016833:14533-14552 None:intergenic 50.0%
GCAGGAAGGAGAAGCTATTG+AGG + tig0016833:15229-15248 Msa1359930:intron 50.0%
GCGATTCGTCATAGTTCCGA+TGG + tig0016833:15757-15776 Msa1359930:intron 50.0%
! CCTGAAAGTACAGACCCAGA+GGG - tig0016833:17909-17928 None:intergenic 50.0%
! CATGGCTTAAGCTTTGGTGC+AGG + tig0016833:17947-17966 Msa1359930:CDS 50.0%
ACAGCTAGCTCAACTACCTG+AGG - tig0016833:17996-18015 None:intergenic 50.0%
CCCAAGTGCAAAACCACTTC+AGG - tig0016833:18336-18355 None:intergenic 50.0%
GATAGAGGGTGGCTAAGAGA+GGG - tig0016833:18692-18711 None:intergenic 50.0%
TGATAGAGGGTGGCTAAGAG+AGG - tig0016833:18693-18712 None:intergenic 50.0%
TCTTAGCCACCCTCTATCAG+TGG + tig0016833:18694-18713 Msa1359930:three_prime_UTR 50.0%
! TATGTGCCACTGATAGAGGG+TGG - tig0016833:18703-18722 None:intergenic 50.0%
AGTAGTCCCCAACGACACTA+TGG + tig0016833:18841-18860 Msa1359930:three_prime_UTR 50.0%
ATGATCACAGCCACAGGTAC+TGG + tig0016833:19368-19387 Msa1359930:intron 50.0%
! TTTTCCTTGTGCAGGAACGG+GGG + tig0016833:19694-19713 Msa1359930:intron 50.0%
! ACTACGTCTTGGTGGTCCAT+TGG + tig0016833:19736-19755 Msa1359930:three_prime_UTR 50.0%
! TCTTGGTGGTCCATTGGTGA+AGG + tig0016833:19742-19761 Msa1359930:three_prime_UTR 50.0%
TCGCAACCATGGTTCTTGAG+AGG + tig0016833:19771-19790 Msa1359930:three_prime_UTR 50.0%
ACGCAGTCTGTTACACTGGT+TGG + tig0016833:19998-20017 Msa1359930:three_prime_UTR 50.0%
! CTGTTACACTGGTTGGACTG+AGG + tig0016833:20005-20024 Msa1359930:three_prime_UTR 50.0%
CTGAAAGAGAGAGAGGGTCG+CGG + tig0016833:14366-14385 Msa1359930:five_prime_UTR 55.0%
TGAAAGAGAGAGAGGGTCGC+GGG + tig0016833:14367-14386 Msa1359930:five_prime_UTR 55.0%
!! GTGCAGATCGGAGTGTTGGA+CGG - tig0016833:14440-14459 None:intergenic 55.0%
ATCGGTGCAGATCGGAGTGT+TGG - tig0016833:14444-14463 None:intergenic 55.0%
ATGGGGGCTGGGTTTGCAAT+TGG + tig0016833:14633-14652 Msa1359930:five_prime_UTR 55.0%
CCCTCTGGGTCTGTACTTTC+AGG + tig0016833:17906-17925 Msa1359930:intron 55.0%
! GCCTGAAAGTACAGACCCAG+AGG - tig0016833:17910-17929 None:intergenic 55.0%
AGTCCCCAACGACACTATGG+CGG + tig0016833:18844-18863 Msa1359930:three_prime_UTR 55.0%
! AACCCGCCATAGTGTCGTTG+GGG - tig0016833:18850-18869 None:intergenic 55.0%
! CAACCCGCCATAGTGTCGTT+GGG - tig0016833:18851-18870 None:intergenic 55.0%
ACAACCCGCCATAGTGTCGT+TGG - tig0016833:18852-18871 None:intergenic 55.0%
!! AACGACACTATGGCGGGTTG+TGG + tig0016833:18851-18870 Msa1359930:three_prime_UTR 55.0%
ACAAGGACAGCATGTGCTGC+AGG + tig0016833:19915-19934 Msa1359930:three_prime_UTR 55.0%
CAAGGACAGCATGTGCTGCA+GGG + tig0016833:19916-19935 Msa1359930:three_prime_UTR 55.0%
CAGACTGCGTGCCTCTTCAA+TGG - tig0016833:19988-20007 None:intergenic 55.0%
AGGCACGCAGTCTGTTACAC+TGG + tig0016833:19994-20013 Msa1359930:three_prime_UTR 55.0%
! TACACTGGTTGGACTGAGGC+AGG + tig0016833:20009-20028 Msa1359930:three_prime_UTR 55.0%
GGTTGGACTGAGGCAGGTTT+CGG + tig0016833:20015-20034 Msa1359930:three_prime_UTR 55.0%
TGAGGCAGGTTTCGGCAAGA+TGG + tig0016833:20023-20042 Msa1359930:three_prime_UTR 55.0%
GAGGCAGGTTTCGGCAAGAT+GGG + tig0016833:20024-20043 Msa1359930:three_prime_UTR 55.0%
GGGGCTGGGTTTGCAATTGG+AGG + tig0016833:14636-14655 Msa1359930:five_prime_UTR 60.0%
! CTGAGGGTGGGTTTCTAGGG+AGG + tig0016833:18461-18480 Msa1359930:three_prime_UTR 60.0%
GTCCCCAACGACACTATGGC+GGG + tig0016833:18845-18864 Msa1359930:three_prime_UTR 60.0%
!! GACACTATGGCGGGTTGTGG+TGG + tig0016833:18854-18873 Msa1359930:three_prime_UTR 60.0%
GCAACGTGGACCAGTACCTG+TGG - tig0016833:19381-19400 None:intergenic 60.0%
AGAGGGTCGCCGGGAGAGAA+AGG + tig0016833:14395-14414 Msa1359930:five_prime_UTR 65.0%
GAGGGTCGCCGGGAGAGAAA+GGG + tig0016833:14396-14415 Msa1359930:five_prime_UTR 65.0%
GTGTTGGACGGCGAGGTCGA+CGG - tig0016833:14428-14447 None:intergenic 65.0%
!! GATCGGAGTGTTGGACGGCG+AGG - tig0016833:14435-14454 None:intergenic 65.0%
TGGTCCCCCGTTCCTGCACA+AGG - tig0016833:19701-19720 None:intergenic 65.0%
GGACAGCATGTGCTGCAGGG+TGG + tig0016833:19919-19938 Msa1359930:three_prime_UTR 65.0%
GAGAGAGAGGGTCGCGGGAG+AGG + tig0016833:14372-14391 Msa1359930:five_prime_UTR 70.0%
AGAGGGTCGCGGGAGAGGAG+AGG + tig0016833:14377-14396 Msa1359930:five_prime_UTR 70.0%
GAGGGTCGCGGGAGAGGAGA+GGG + tig0016833:14378-14397 Msa1359930:five_prime_UTR 70.0%
GGCGGCGACCCTTTCTCTCC+CGG - tig0016833:14407-14426 None:intergenic 70.0%
TTGGACGGCGAGGTCGACGG+CGG - tig0016833:14425-14444 None:intergenic 70.0%
GCGGGAGAGGAGAGGGTCGC+CGG + tig0016833:14385-14404 Msa1359930:five_prime_UTR 75.0%
CGGGAGAGGAGAGGGTCGCC+GGG + tig0016833:14386-14405 Msa1359930:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
tig0016833 gene 14346 20245 14346 ID=Msa1359930;Name=Msa1359930
tig0016833 mRNA 14346 20245 14346 ID=Msa1359930-mRNA-1;Parent=Msa1359930;Name=Msa1359930-mRNA-1;_AED=0.26;_eAED=0.26;_QI=412|0.9|0.90|1|0.1|0|11|1368|114
tig0016833 exon 14346 14489 14346 ID=Msa1359930-mRNA-1:exon:11606;Parent=Msa1359930-mRNA-1
tig0016833 exon 14632 14679 14632 ID=Msa1359930-mRNA-1:exon:11607;Parent=Msa1359930-mRNA-1
tig0016833 exon 14832 14861 14832 ID=Msa1359930-mRNA-1:exon:11608;Parent=Msa1359930-mRNA-1
tig0016833 exon 15012 15056 15012 ID=Msa1359930-mRNA-1:exon:11609;Parent=Msa1359930-mRNA-1
tig0016833 exon 16061 16219 16061 ID=Msa1359930-mRNA-1:exon:11610;Parent=Msa1359930-mRNA-1
tig0016833 exon 16323 16515 16323 ID=Msa1359930-mRNA-1:exon:11611;Parent=Msa1359930-mRNA-1
tig0016833 exon 17928 17998 17928 ID=Msa1359930-mRNA-1:exon:11612;Parent=Msa1359930-mRNA-1
tig0016833 exon 18099 18209 18099 ID=Msa1359930-mRNA-1:exon:11613;Parent=Msa1359930-mRNA-1
tig0016833 exon 18430 19325 18430 ID=Msa1359930-mRNA-1:exon:11614;Parent=Msa1359930-mRNA-1
tig0016833 exon 19708 19792 19708 ID=Msa1359930-mRNA-1:exon:11615;Parent=Msa1359930-mRNA-1
tig0016833 exon 19903 20245 19903 ID=Msa1359930-mRNA-1:exon:11616;Parent=Msa1359930-mRNA-1
tig0016833 five_prime_UTR 14346 14489 14346 ID=Msa1359930-mRNA-1:five_prime_utr;Parent=Msa1359930-mRNA-1
tig0016833 five_prime_UTR 14632 14679 14632 ID=Msa1359930-mRNA-1:five_prime_utr;Parent=Msa1359930-mRNA-1
tig0016833 five_prime_UTR 14832 14861 14832 ID=Msa1359930-mRNA-1:five_prime_utr;Parent=Msa1359930-mRNA-1
tig0016833 five_prime_UTR 15012 15056 15012 ID=Msa1359930-mRNA-1:five_prime_utr;Parent=Msa1359930-mRNA-1
tig0016833 five_prime_UTR 16061 16205 16061 ID=Msa1359930-mRNA-1:five_prime_utr;Parent=Msa1359930-mRNA-1
tig0016833 CDS 16206 16219 16206 ID=Msa1359930-mRNA-1:cds;Parent=Msa1359930-mRNA-1
tig0016833 CDS 16323 16515 16323 ID=Msa1359930-mRNA-1:cds;Parent=Msa1359930-mRNA-1
tig0016833 CDS 17928 17998 17928 ID=Msa1359930-mRNA-1:cds;Parent=Msa1359930-mRNA-1
tig0016833 CDS 18099 18165 18099 ID=Msa1359930-mRNA-1:cds;Parent=Msa1359930-mRNA-1
tig0016833 three_prime_UTR 18166 18209 18166 ID=Msa1359930-mRNA-1:three_prime_utr;Parent=Msa1359930-mRNA-1
tig0016833 three_prime_UTR 18430 19325 18430 ID=Msa1359930-mRNA-1:three_prime_utr;Parent=Msa1359930-mRNA-1
tig0016833 three_prime_UTR 19708 19792 19708 ID=Msa1359930-mRNA-1:three_prime_utr;Parent=Msa1359930-mRNA-1
tig0016833 three_prime_UTR 19903 20245 19903 ID=Msa1359930-mRNA-1:three_prime_utr;Parent=Msa1359930-mRNA-1
Gene Sequence

>Msa1359930

ATGACCAAATCAAGCTTATGTGATGAATCTTTTGAAAACAGAAGAGAATGGATGGAATGTGCCACCAAAGTAAGACATGGTGTGAAAGAACTAGAAGACATAAATGGAGAACTATATTATTTGAGAGAAAAGTTGACAGAGAATCATAAGAAAAAGGGTGAAGCATATCAAAGGATTTTAAAATTGAAAAATTTGCATCATGAGGAGGCATATCAGTTGGTCTTAACATGGCTTAAGCTTTGGTGCAGGCTCCATCTCGATCTCAGTCAATTCCTCAGGTTTCGGTCAAAACCCAAAGGCTTGAAGAACTTGCTATTAAGCAGTCAAGACAATGGATTCCAGTGA
Protein sequence

>Msa1359930

MTKSSLCDESFENRREWMECATKVRHGVKELEDINGELYYLREKLTENHKKKGEAYQRILKLKNLHHEEAYQLVLTWLKLWCRLHLDLSQFLRFRSKPKGLKNLLLSSQDNGFQ*