Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196090 | Msa0862410 | 0.849440 | 3.229081e-60 | -8.615850e-47 |
| Msa0443590 | Msa0862410 | 0.821727 | 3.462742e-53 | -8.615850e-47 |
| Msa0862410 | Msa1359930 | 0.808546 | 2.936545e-50 | -8.615850e-47 |
| Msa0862410 | Msa1366360 | 0.847847 | 8.926242e-60 | -8.615850e-47 |
| Msa0862410 | Msa1466190 | 0.820292 | 7.409083e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGTAATTTGTGCATTAT+TGG | 0.225543 | 5_4:+62030533 | Msa0862410:three_prime_UTR |
| TGCATTATTGGTTCCTTCAT+TGG | 0.240192 | 5_4:+62030545 | Msa0862410:three_prime_UTR |
| AGAAAGCTTAATTGAAAGTA+TGG | 0.246651 | 5_4:+62026572 | Msa0862410:exon |
| TTTCAAATGTTTGTGCAATA+TGG | 0.251188 | 5_4:+62030670 | Msa0862410:three_prime_UTR |
| ATTAGAAGCAAAGGAAATTA+AGG | 0.271373 | 5_4:+62026426 | Msa0862410:five_prime_UTR |
| ATAATTAAGATGAAACTAAT+TGG | 0.284724 | 5_4:-62030570 | None:intergenic |
| ACATTCAATCCAAAGAATTA+TGG | 0.303975 | 5_4:-62026984 | None:intergenic |
| GGTTTGGTTCCATAATTCTT+TGG | 0.308785 | 5_4:+62026975 | Msa0862410:CDS |
| AATTATTATGTTGTATTCCT+TGG | 0.326432 | 5_4:+62030587 | Msa0862410:three_prime_UTR |
| GAGGAAGAAACAAGAAGAAT+TGG | 0.332205 | 5_4:+62026613 | Msa0862410:CDS |
| GGTTGGACTGAGGCAGGTTT+CGG | 0.378173 | 5_4:+62030462 | Msa0862410:three_prime_UTR |
| GTAGTCTTCTTTCAAATGTA+TGG | 0.378293 | 5_4:-62030165 | None:intergenic |
| TTTCGGCAAGATGGGTGTTT+CGG | 0.388400 | 5_4:+62030479 | Msa0862410:three_prime_UTR |
| GCGGGAGAGGAGAGGGTCGC+CGG | 0.399149 | 5_4:+62026343 | Msa0862410:five_prime_UTR |
| AGAGGGTCGCCGGGAGAGAA+AGG | 0.399773 | 5_4:+62026353 | Msa0862410:five_prime_UTR |
| GAGAGAGAGGGTCGCGGGAG+AGG | 0.406651 | 5_4:+62026330 | Msa0862410:five_prime_UTR |
| TGTTGCAGGAAACATTGGTT+TGG | 0.423084 | 5_4:+62026959 | Msa0862410:intron |
| TACACTGGTTGGACTGAGGC+AGG | 0.459434 | 5_4:+62030456 | Msa0862410:three_prime_UTR |
| CCTTTGCTTCTAATGCAAAT+CGG | 0.462785 | 5_4:-62026417 | None:intergenic |
| CGGGAGAGGAGAGGGTCGCC+GGG | 0.471331 | 5_4:+62026344 | Msa0862410:five_prime_UTR |
| GAAAGCTTAATTGAAAGTAT+GGG | 0.474338 | 5_4:+62026573 | Msa0862410:exon |
| AAACTAATTGGAACCAATGA+AGG | 0.474797 | 5_4:-62030558 | None:intergenic |
| CTTTGATAAATACTTTAGAA+AGG | 0.476087 | 5_4:+62030641 | Msa0862410:three_prime_UTR |
| GAGGGTCGCGGGAGAGGAGA+GGG | 0.478831 | 5_4:+62026336 | Msa0862410:five_prime_UTR |
| GAGGGTCGCCGGGAGAGAAA+GGG | 0.483705 | 5_4:+62026354 | Msa0862410:five_prime_UTR |
| GAAGAAACAAGAAGAATTGG+AGG | 0.484939 | 5_4:+62026616 | Msa0862410:CDS |
| TGAGGCAGGTTTCGGCAAGA+TGG | 0.486601 | 5_4:+62030470 | Msa0862410:three_prime_UTR |
| TGAAAGAGAGAGAGGGTCGC+GGG | 0.486825 | 5_4:+62026325 | Msa0862410:five_prime_UTR |
| AGGCACGCAGTCTGTTACAC+TGG | 0.491245 | 5_4:+62030441 | Msa0862410:three_prime_UTR |
| GGGGCTGGGTTTGCAATTGG+AGG | 0.496777 | 5_4:+62026594 | Msa0862410:CDS |
| CTGAAAGAGAGAGAGGGTCG+CGG | 0.505347 | 5_4:+62026324 | Msa0862410:five_prime_UTR |
| CAGACTGCGTGCCTCTTCAA+TGG | 0.510928 | 5_4:-62030432 | None:intergenic |
| ATCGGTGCAGATCGGAGTGT+TGG | 0.515737 | 5_4:-62026399 | None:intergenic |
| ACTTCTGTTGCAGGAAACAT+TGG | 0.523691 | 5_4:+62026954 | Msa0862410:intron |
| AGAGGGTCGCGGGAGAGGAG+AGG | 0.525300 | 5_4:+62026335 | Msa0862410:five_prime_UTR |
| ACAAGGACAGCATGTGCTGC+AGG | 0.526864 | 5_4:+62030362 | Msa0862410:three_prime_UTR |
| GGCGGCGACCCTTTCTCTCC+CGG | 0.533339 | 5_4:-62026362 | None:intergenic |
| ACTACGTCTTGGTGGTCCAT+TGG | 0.537769 | 5_4:+62030183 | Msa0862410:three_prime_UTR |
| GAGGCAGGTTTCGGCAAGAT+GGG | 0.538244 | 5_4:+62030471 | Msa0862410:three_prime_UTR |
| TGCAGTCAATTCTCTGTACA+AGG | 0.540808 | 5_4:+62030345 | Msa0862410:intron |
| GTGTTGGACGGCGAGGTCGA+CGG | 0.546335 | 5_4:-62026383 | None:intergenic |
| GAAAGAAGACTACGTCTTGG+TGG | 0.549879 | 5_4:+62030175 | Msa0862410:three_prime_UTR |
| CCGATTTGCATTAGAAGCAA+AGG | 0.550622 | 5_4:+62026417 | Msa0862410:five_prime_UTR |
| AAAGCTTAATTGAAAGTATG+GGG | 0.553492 | 5_4:+62026574 | Msa0862410:exon |
| AGAAGAGCTGAAAGAGAGAG+AGG | 0.580586 | 5_4:+62026317 | Msa0862410:five_prime_UTR |
| AGTATTTATCAAAGCATCAA+AGG | 0.582726 | 5_4:-62030632 | None:intergenic |
| AGAAAGAGCAACCATTGAAG+AGG | 0.585732 | 5_4:+62030421 | Msa0862410:three_prime_UTR |
| TTTGAAAGAAGACTACGTCT+TGG | 0.593120 | 5_4:+62030172 | Msa0862410:three_prime_UTR |
| ACGCAGTCTGTTACACTGGT+TGG | 0.593852 | 5_4:+62030445 | Msa0862410:three_prime_UTR |
| TCTTGGTGGTCCATTGGTGA+AGG | 0.608383 | 5_4:+62030189 | Msa0862410:three_prime_UTR |
| TAATGCAAATCGGTGCAGAT+CGG | 0.610433 | 5_4:-62026407 | None:intergenic |
| GATCGGAGTGTTGGACGGCG+AGG | 0.614383 | 5_4:-62026390 | None:intergenic |
| GAAGGAAAACATCGCAACCA+TGG | 0.618992 | 5_4:+62030207 | Msa0862410:three_prime_UTR |
| TCGCAACCATGGTTCTTGAG+AGG | 0.620117 | 5_4:+62030218 | Msa0862410:three_prime_UTR |
| GTGCAGATCGGAGTGTTGGA+CGG | 0.620791 | 5_4:-62026395 | None:intergenic |
| GAAGAGCTGAAAGAGAGAGA+GGG | 0.635681 | 5_4:+62026318 | Msa0862410:five_prime_UTR |
| CTCTAACCTCTCAAGAACCA+TGG | 0.655626 | 5_4:-62030224 | None:intergenic |
| CAAGGACAGCATGTGCTGCA+GGG | 0.666583 | 5_4:+62030363 | Msa0862410:three_prime_UTR |
| CTGTTACACTGGTTGGACTG+AGG | 0.672284 | 5_4:+62030452 | Msa0862410:three_prime_UTR |
| TTGGACGGCGAGGTCGACGG+CGG | 0.673722 | 5_4:-62026380 | None:intergenic |
| AAGCTTAATTGAAAGTATGG+GGG | 0.683305 | 5_4:+62026575 | Msa0862410:exon |
| GGACAGCATGTGCTGCAGGG+TGG | 0.776953 | 5_4:+62030366 | Msa0862410:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATAATTATGATCATTT+TGG | + | chr5_4:62027438-62027457 | Msa0862410:intron | 10.0% |
| !!! | TTTGATTATTGATTTTTTAT+CGG | + | chr5_4:62028767-62028786 | Msa0862410:intron | 10.0% |
| !!! | TTGAATATTTTTTTTTTGAA+TGG | + | chr5_4:62028865-62028884 | Msa0862410:intron | 10.0% |
| !!! | TTTTTTTTTTTTAAGTTTGT+TGG | - | chr5_4:62029400-62029419 | None:intergenic | 10.0% |
| !! | TTCATTAAGAAATTGAAATT+GGG | - | chr5_4:62026513-62026532 | None:intergenic | 15.0% |
| !! | AATTTCAATTTCTTAATGAA+GGG | + | chr5_4:62026513-62026532 | Msa0862410:intron | 15.0% |
| !!! | TTAAATGAGGTTTTATTATT+TGG | + | chr5_4:62027669-62027688 | Msa0862410:intron | 15.0% |
| !!! | TTCTGAATAATATTTGATTT+TGG | + | chr5_4:62027877-62027896 | Msa0862410:intron | 15.0% |
| !!! | ATAATATTTGATTTTGGTTT+TGG | + | chr5_4:62027883-62027902 | Msa0862410:intron | 15.0% |
| !! | ACAATTTCAAATTCAATATA+TGG | + | chr5_4:62028067-62028086 | Msa0862410:intron | 15.0% |
| !! | AATCAAACAAATTGATATTA+AGG | - | chr5_4:62028717-62028736 | None:intergenic | 15.0% |
| !! | AATAAATACTAAACAACATA+TGG | - | chr5_4:62029015-62029034 | None:intergenic | 15.0% |
| !! | AATGAAACAATAAAAAAAGA+GGG | - | chr5_4:62029089-62029108 | None:intergenic | 15.0% |
| !! | TAATGAAACAATAAAAAAAG+AGG | - | chr5_4:62029090-62029109 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATTCTAAATTTG+TGG | - | chr5_4:62029982-62030001 | None:intergenic | 15.0% |
| !! | TAAAACAAAATTAATCTTGT+AGG | - | chr5_4:62030068-62030087 | None:intergenic | 15.0% |
| !! | ATAATTAAGATGAAACTAAT+TGG | - | chr5_4:62030573-62030592 | None:intergenic | 15.0% |
| !! | TCATTAAGAAATTGAAATTG+GGG | - | chr5_4:62026512-62026531 | None:intergenic | 20.0% |
| !! | CTTCATTAAGAAATTGAAAT+TGG | - | chr5_4:62026514-62026533 | None:intergenic | 20.0% |
| !! | CAATTTCAATTTCTTAATGA+AGG | + | chr5_4:62026512-62026531 | Msa0862410:intron | 20.0% |
| !!! | TTGTTGTTCTTAGAATAAAA+AGG | + | chr5_4:62026777-62026796 | Msa0862410:intron | 20.0% |
| !!! | ACTGTACTGTTTTATATATA+AGG | + | chr5_4:62026904-62026923 | Msa0862410:intron | 20.0% |
| !!! | TGAGTAAATTTTTGTAAGTT+TGG | + | chr5_4:62027013-62027032 | Msa0862410:intron | 20.0% |
| !! | AAATGAAGTATACTTCATAT+TGG | - | chr5_4:62027291-62027310 | None:intergenic | 20.0% |
| !!! | GTTAAATTTTCTGGATAAAA+AGG | - | chr5_4:62027391-62027410 | None:intergenic | 20.0% |
| !! | TGAATTATATGCAATGATTA+TGG | + | chr5_4:62027843-62027862 | Msa0862410:intron | 20.0% |
| !! | ATAAATTCAAACAACAAAAG+AGG | - | chr5_4:62027918-62027937 | None:intergenic | 20.0% |
| !!! | GTCATTTATAATTTTCTTCA+AGG | - | chr5_4:62028144-62028163 | None:intergenic | 20.0% |
| !! | AATTATAAATGACCAAATCA+AGG | + | chr5_4:62028151-62028170 | Msa0862410:intron | 20.0% |
| !!! | GGTTAGTTATAGATTAATAT+TGG | + | chr5_4:62028172-62028191 | Msa0862410:intron | 20.0% |
| !! | ATATATTGAATGCATAATGA+TGG | - | chr5_4:62028487-62028506 | None:intergenic | 20.0% |
| !!! | AAAAGCATAAACTATTACAA+AGG | - | chr5_4:62028535-62028554 | None:intergenic | 20.0% |
| !!! | TTTGGATGATTTTGTATTAT+CGG | + | chr5_4:62028835-62028854 | Msa0862410:intron | 20.0% |
| !!! | TGAATATGAATTTGGTTTTA+TGG | + | chr5_4:62028902-62028921 | Msa0862410:intron | 20.0% |
| !!! | GAATATGAATTTGGTTTTAT+GGG | + | chr5_4:62028903-62028922 | Msa0862410:intron | 20.0% |
| !! | TCTTTATGCTTGAAAAATAT+TGG | + | chr5_4:62029333-62029352 | Msa0862410:intron | 20.0% |
| !!! | ATGACCTTGTTTAAATAAAT+AGG | - | chr5_4:62030291-62030310 | None:intergenic | 20.0% |
| !!! | AATTGTAATTTGTGCATTAT+TGG | + | chr5_4:62030533-62030552 | Msa0862410:three_prime_UTR | 20.0% |
| !! | AATTATTATGTTGTATTCCT+TGG | + | chr5_4:62030587-62030606 | Msa0862410:three_prime_UTR | 20.0% |
| !!! | CTTTGATAAATACTTTAGAA+AGG | + | chr5_4:62030641-62030660 | Msa0862410:three_prime_UTR | 20.0% |
| ! | ATTAGAAGCAAAGGAAATTA+AGG | + | chr5_4:62026426-62026445 | Msa0862410:five_prime_UTR | 25.0% |
| ! | AGAAAGCTTAATTGAAAGTA+TGG | + | chr5_4:62026572-62026591 | Msa0862410:exon | 25.0% |
| !! | GAAAGCTTAATTGAAAGTAT+GGG | + | chr5_4:62026573-62026592 | Msa0862410:exon | 25.0% |
| !! | AAAGCTTAATTGAAAGTATG+GGG | + | chr5_4:62026574-62026593 | Msa0862410:exon | 25.0% |
| !! | GTAAATTTTTGTACAAGTGA+TGG | + | chr5_4:62026638-62026657 | Msa0862410:intron | 25.0% |
| ! | ACACATGAGATATATCAATA+TGG | - | chr5_4:62026721-62026740 | None:intergenic | 25.0% |
| !!! | TATATAAGGTGATTTTGATC+TGG | + | chr5_4:62026918-62026937 | Msa0862410:intron | 25.0% |
| ! | ACATTCAATCCAAAGAATTA+TGG | - | chr5_4:62026987-62027006 | None:intergenic | 25.0% |
| ! | ATTTCTGTAAAATTTGAGTG+TGG | + | chr5_4:62027042-62027061 | Msa0862410:intron | 25.0% |
| !! | GTGTTTTATAAGGTTTTCTT+TGG | + | chr5_4:62027136-62027155 | Msa0862410:intron | 25.0% |
| !!! | CAAGTTTTGGTTAAATTTTC+TGG | - | chr5_4:62027400-62027419 | None:intergenic | 25.0% |
| !!! | AATCTGTTTGTTTTTGTGTT+TGG | + | chr5_4:62027946-62027965 | Msa0862410:intron | 25.0% |
| ! | TTGTTGAAATGTTGAAAACT+TGG | + | chr5_4:62027986-62028005 | Msa0862410:intron | 25.0% |
| !! | GGAGTTTTTACTTGAAAAAT+TGG | + | chr5_4:62028021-62028040 | Msa0862410:intron | 25.0% |
| !!! | TTCTGGTAATGATTTTGTAA+AGG | + | chr5_4:62028097-62028116 | Msa0862410:intron | 25.0% |
| ! | ATCTATAACTAACCTTGATT+TGG | - | chr5_4:62028166-62028185 | None:intergenic | 25.0% |
| ! | TTAGCTTATTCATGTCTTAA+AGG | + | chr5_4:62028208-62028227 | Msa0862410:intron | 25.0% |
| ! | AAAGAACTAGAAGACATAAA+TGG | + | chr5_4:62028346-62028365 | Msa0862410:intron | 25.0% |
| ! | ACAGAGAATCATAAGAAAAA+GGG | + | chr5_4:62028397-62028416 | Msa0862410:intron | 25.0% |
| ! | ATTGAAAAATTTGCATCATG+AGG | + | chr5_4:62028444-62028463 | Msa0862410:intron | 25.0% |
| ! | GGAAAATGATAACTATTACA+CGG | - | chr5_4:62028514-62028533 | None:intergenic | 25.0% |
| ! | AGTCTATGTTAATTATACAC+TGG | + | chr5_4:62028582-62028601 | Msa0862410:intron | 25.0% |
| ! | TTGAAGTAATTAAGCAACTT+TGG | - | chr5_4:62028636-62028655 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGAAATTTTGCGC+TGG | + | chr5_4:62028742-62028761 | Msa0862410:intron | 25.0% |
| !!! | TTTTTTTGAAATTTTGCGCT+GGG | + | chr5_4:62028743-62028762 | Msa0862410:intron | 25.0% |
| !!! | GATTATTGATTTTTTATCGG+TGG | + | chr5_4:62028770-62028789 | Msa0862410:intron | 25.0% |
| !! | AAAATTGAGAATTGGTTTAG+TGG | + | chr5_4:62028795-62028814 | Msa0862410:intron | 25.0% |
| !! | AAATTGAGAATTGGTTTAGT+GGG | + | chr5_4:62028796-62028815 | Msa0862410:intron | 25.0% |
| !! | TTTTTGAATGGCAAATATGT+TGG | + | chr5_4:62028877-62028896 | Msa0862410:intron | 25.0% |
| !!! | TGTTGGTTTGAATATGAATT+TGG | + | chr5_4:62028894-62028913 | Msa0862410:intron | 25.0% |
| ! | TTGCTTCTTGCTTAAATTTA+TGG | + | chr5_4:62028975-62028994 | Msa0862410:intron | 25.0% |
| ! | AACAATAAAAAAAGAGGGAT+GGG | - | chr5_4:62029084-62029103 | None:intergenic | 25.0% |
| ! | AAACAATAAAAAAAGAGGGA+TGG | - | chr5_4:62029085-62029104 | None:intergenic | 25.0% |
| ! | TTAAGTTCTGTTATGGTAAA+TGG | + | chr5_4:62029230-62029249 | Msa0862410:intron | 25.0% |
| ! | TGACATAATTATAGCAGAAA+TGG | - | chr5_4:62029270-62029289 | None:intergenic | 25.0% |
| ! | ACATTGCTACTAATAAGAAA+GGG | - | chr5_4:62029500-62029519 | None:intergenic | 25.0% |
| ! | AACATTGCTACTAATAAGAA+AGG | - | chr5_4:62029501-62029520 | None:intergenic | 25.0% |
| ! | ATCATAATTCAAAACCATGA+CGG | - | chr5_4:62029799-62029818 | None:intergenic | 25.0% |
| ! | CATGCAAAGAATAAATCATA+TGG | - | chr5_4:62029951-62029970 | None:intergenic | 25.0% |
| !! | AAAAAAGTATGTTGAAAGCT+TGG | + | chr5_4:62029995-62030014 | Msa0862410:intron | 25.0% |
| !! | CCTTGTTTAAATAAATAGGT+TGG | - | chr5_4:62030287-62030306 | None:intergenic | 25.0% |
| ! | CCAACCTATTTATTTAAACA+AGG | + | chr5_4:62030284-62030303 | Msa0862410:intron | 25.0% |
| !! | AGTATTTATCAAAGCATCAA+AGG | - | chr5_4:62030635-62030654 | None:intergenic | 25.0% |
| ! | AAGCTTAATTGAAAGTATGG+GGG | + | chr5_4:62026575-62026594 | Msa0862410:exon | 30.0% |
| GGTAAATCATTTCTGTTTGA+TGG | + | chr5_4:62026659-62026678 | Msa0862410:intron | 30.0% | |
| GGAGATTTAAGAAGATATGA+AGG | + | chr5_4:62026798-62026817 | Msa0862410:intron | 30.0% | |
| GTTGTTTAAGCACCTTAAAA+TGG | + | chr5_4:62026869-62026888 | Msa0862410:intron | 30.0% | |
| ! | GTCACGAAAAATCCATTTTA+AGG | - | chr5_4:62026884-62026903 | None:intergenic | 30.0% |
| TTCTTTGGATTGAATGTTAG+AGG | + | chr5_4:62026990-62027009 | Msa0862410:intron | 30.0% | |
| !! | TAATCATGAAACTAGCTCTA+TGG | + | chr5_4:62027080-62027099 | Msa0862410:intron | 30.0% |
| !! | AATCATGAAACTAGCTCTAT+GGG | + | chr5_4:62027081-62027100 | Msa0862410:intron | 30.0% |
| ! | TCTCTGTTGTGTGTTTTATA+AGG | + | chr5_4:62027126-62027145 | Msa0862410:intron | 30.0% |
| CAGCATTGTATATGCATAAA+AGG | - | chr5_4:62027624-62027643 | None:intergenic | 30.0% | |
| TTAGTTGTGTGTCTTAAATG+AGG | + | chr5_4:62027656-62027675 | Msa0862410:intron | 30.0% | |
| !!! | TGGAATTGTTTTGAAACCAT+CGG | - | chr5_4:62027729-62027748 | None:intergenic | 30.0% |
| ! | AGAATGGTGATGATAAGTAT+TGG | - | chr5_4:62027749-62027768 | None:intergenic | 30.0% |
| ATTCCTACAAGTTTGAAGAA+TGG | - | chr5_4:62027765-62027784 | None:intergenic | 30.0% | |
| !!! | ATTTGATTTTGGTTTTGGCT+TGG | + | chr5_4:62027888-62027907 | Msa0862410:intron | 30.0% |
| AAAACTTGGAACAGATTAGA+GGG | + | chr5_4:62028000-62028019 | Msa0862410:intron | 30.0% | |
| TTTCTTCAAGGATTCATAGT+TGG | - | chr5_4:62028132-62028151 | None:intergenic | 30.0% | |
| !! | CTTTTGAAAAGAGAAGAGAA+TGG | + | chr5_4:62028290-62028309 | Msa0862410:intron | 30.0% |
| GACAGAGAATCATAAGAAAA+AGG | + | chr5_4:62028396-62028415 | Msa0862410:intron | 30.0% | |
| TTAACATAGACTCATAGCTA+TGG | - | chr5_4:62028574-62028593 | None:intergenic | 30.0% | |
| TTATACACTGGAGACTATAT+AGG | + | chr5_4:62028594-62028613 | Msa0862410:intron | 30.0% | |
| ! | TGATTTTGTATTATCGGTGT+TGG | + | chr5_4:62028841-62028860 | Msa0862410:intron | 30.0% |
| TAGTATTTATTACCCTCTCT+TGG | + | chr5_4:62029024-62029043 | Msa0862410:intron | 30.0% | |
| CATAATCAAACCTGAAATCT+AGG | + | chr5_4:62029153-62029172 | Msa0862410:intron | 30.0% | |
| !!! | GCAGATTTTAAGTTCTGTTA+TGG | + | chr5_4:62029223-62029242 | Msa0862410:intron | 30.0% |
| ATAATTATAGCAGAAATGGC+AGG | - | chr5_4:62029266-62029285 | None:intergenic | 30.0% | |
| TGTAATTGCGTCATATAATG+AGG | + | chr5_4:62029298-62029317 | Msa0862410:intron | 30.0% | |
| TATTTGACATGACTGCTATT+TGG | + | chr5_4:62029364-62029383 | Msa0862410:intron | 30.0% | |
| GTTCTTGATCTTGGATAAAT+AGG | + | chr5_4:62029532-62029551 | Msa0862410:intron | 30.0% | |
| CGACTAATTAGAATCATTCA+AGG | - | chr5_4:62029570-62029589 | None:intergenic | 30.0% | |
| GTTGCGAAAGAGTTAAATAA+TGG | + | chr5_4:62029842-62029861 | Msa0862410:intron | 30.0% | |
| ! | TAAGCTTTGATTATGTCTCT+TGG | + | chr5_4:62030086-62030105 | Msa0862410:intron | 30.0% |
| GTAGTCTTCTTTCAAATGTA+TGG | - | chr5_4:62030168-62030187 | None:intergenic | 30.0% | |
| ! | GCAACGTGCTTTTATAATTT+TGG | + | chr5_4:62030501-62030520 | Msa0862410:three_prime_UTR | 30.0% |
| AAACTAATTGGAACCAATGA+AGG | - | chr5_4:62030561-62030580 | None:intergenic | 30.0% | |
| ! | ATATTTTGTTCATGAGACCA+AGG | - | chr5_4:62030607-62030626 | None:intergenic | 30.0% |
| CCTTTGCTTCTAATGCAAAT+CGG | - | chr5_4:62026420-62026439 | None:intergenic | 35.0% | |
| TTGGTTGAGTAAGAAAAGAG+AGG | - | chr5_4:62026472-62026491 | None:intergenic | 35.0% | |
| ATTGAAATTGGGGCTGAAAA+GGG | - | chr5_4:62026502-62026521 | None:intergenic | 35.0% | |
| AATTGAAATTGGGGCTGAAA+AGG | - | chr5_4:62026503-62026522 | None:intergenic | 35.0% | |
| GAGGAAGAAACAAGAAGAAT+TGG | + | chr5_4:62026613-62026632 | Msa0862410:CDS | 35.0% | |
| GAAGAAACAAGAAGAATTGG+AGG | + | chr5_4:62026616-62026635 | Msa0862410:CDS | 35.0% | |
| ATGATTACTACTTCTGTTGC+AGG | + | chr5_4:62026945-62026964 | Msa0862410:intron | 35.0% | |
| ! | GGTTTGGTTCCATAATTCTT+TGG | + | chr5_4:62026975-62026994 | Msa0862410:CDS | 35.0% |
| !! | TCAACTACAGCTTCAAGTTT+TGG | - | chr5_4:62027413-62027432 | None:intergenic | 35.0% |
| AAAATTATGCAGCTGCAAGT+GGG | + | chr5_4:62027499-62027518 | Msa0862410:intron | 35.0% | |
| TCACCATTCTTCAAACTTGT+AGG | + | chr5_4:62027759-62027778 | Msa0862410:intron | 35.0% | |
| AAACTTGTAGGAATGATGAG+TGG | + | chr5_4:62027771-62027790 | Msa0862410:intron | 35.0% | |
| TGATGAGTGGATCATAAAGA+AGG | + | chr5_4:62027784-62027803 | Msa0862410:intron | 35.0% | |
| GAAAACTTGGAACAGATTAG+AGG | + | chr5_4:62027999-62028018 | Msa0862410:intron | 35.0% | |
| CAATATATGGAAAGAGCTTC+TGG | + | chr5_4:62028080-62028099 | Msa0862410:intron | 35.0% | |
| TGAAAAGAGAAGAGAATGGA+TGG | + | chr5_4:62028294-62028313 | Msa0862410:intron | 35.0% | |
| TTTCACACCATGTCTTACTT+TGG | - | chr5_4:62028329-62028348 | None:intergenic | 35.0% | |
| AAAAGGGTGAAGCATATCAA+AGG | + | chr5_4:62028413-62028432 | Msa0862410:intron | 35.0% | |
| GAAAAATTTGCATCATGAGG+AGG | + | chr5_4:62028447-62028466 | Msa0862410:intron | 35.0% | |
| CGGTGGAAAAAATTGAGAAT+TGG | + | chr5_4:62028787-62028806 | Msa0862410:intron | 35.0% | |
| ! | AAATATGTGCCACTGATAGA+GGG | - | chr5_4:62029053-62029072 | None:intergenic | 35.0% |
| AGTTCTGTTATGGTAAATGG+CGG | + | chr5_4:62029233-62029252 | Msa0862410:intron | 35.0% | |
| CGATGAAAACTTAAGCAACT+TGG | + | chr5_4:62029420-62029439 | Msa0862410:intron | 35.0% | |
| GCATATTGAGTTCTTGATCT+TGG | + | chr5_4:62029523-62029542 | Msa0862410:intron | 35.0% | |
| AGGTAAGCTGAATCATGTTT+AGG | + | chr5_4:62029770-62029789 | Msa0862410:intron | 35.0% | |
| GGTAAGCTGAATCATGTTTA+GGG | + | chr5_4:62029771-62029790 | Msa0862410:intron | 35.0% | |
| TATTTAACTCTTTCGCAACG+TGG | - | chr5_4:62029841-62029860 | None:intergenic | 35.0% | |
| !! | GTATTTGTTTTTCCTTGTGC+AGG | + | chr5_4:62030133-62030152 | Msa0862410:intron | 35.0% |
| TTTGAAAGAAGACTACGTCT+TGG | + | chr5_4:62030172-62030191 | Msa0862410:three_prime_UTR | 35.0% | |
| !! | TGCATTATTGGTTCCTTCAT+TGG | + | chr5_4:62030545-62030564 | Msa0862410:three_prime_UTR | 35.0% |
| TAATGCAAATCGGTGCAGAT+CGG | - | chr5_4:62026410-62026429 | None:intergenic | 40.0% | |
| ! | CCGATTTGCATTAGAAGCAA+AGG | + | chr5_4:62026417-62026436 | Msa0862410:five_prime_UTR | 40.0% |
| ! | TTAATTGAAAGTATGGGGGC+TGG | + | chr5_4:62026579-62026598 | Msa0862410:exon | 40.0% |
| ! | TAATTGAAAGTATGGGGGCT+GGG | + | chr5_4:62026580-62026599 | Msa0862410:exon | 40.0% |
| ACTTCTGTTGCAGGAAACAT+TGG | + | chr5_4:62026954-62026973 | Msa0862410:intron | 40.0% | |
| ! | TGTTGCAGGAAACATTGGTT+TGG | + | chr5_4:62026959-62026978 | Msa0862410:intron | 40.0% |
| GAAAATTATGCAGCTGCAAG+TGG | + | chr5_4:62027498-62027517 | Msa0862410:intron | 40.0% | |
| ! | TGAGAATTGGTTTAGTGGGT+CGG | + | chr5_4:62028800-62028819 | Msa0862410:intron | 40.0% |
| !! | GGTCGGTGAAAGTTTGTTTT+TGG | + | chr5_4:62028817-62028836 | Msa0862410:intron | 40.0% |
| ! | CAAATATGTGCCACTGATAG+AGG | - | chr5_4:62029054-62029073 | None:intergenic | 40.0% |
| CTCTATCAGTGGCACATATT+TGG | + | chr5_4:62029052-62029071 | Msa0862410:intron | 40.0% | |
| TCAGCTTACCTTAATCTCAG+CGG | - | chr5_4:62029761-62029780 | None:intergenic | 40.0% | |
| TGAATTATGATCACAGCCAC+AGG | + | chr5_4:62029808-62029827 | Msa0862410:intron | 40.0% | |
| ! | TGTTTTTCCTTGTGCAGGAA+CGG | + | chr5_4:62030138-62030157 | Msa0862410:intron | 40.0% |
| TGCAGTCAATTCTCTGTACA+AGG | + | chr5_4:62030345-62030364 | Msa0862410:intron | 40.0% | |
| AGAAAGAGCAACCATTGAAG+AGG | + | chr5_4:62030421-62030440 | Msa0862410:three_prime_UTR | 40.0% | |
| AGAAGAGCTGAAAGAGAGAG+AGG | + | chr5_4:62026317-62026336 | Msa0862410:five_prime_UTR | 45.0% | |
| GAAGAGCTGAAAGAGAGAGA+GGG | + | chr5_4:62026318-62026337 | Msa0862410:five_prime_UTR | 45.0% | |
| ATTGGGGCTGAAAAGGGTTA+GGG | - | chr5_4:62026496-62026515 | None:intergenic | 45.0% | |
| AATTGGGGCTGAAAAGGGTT+AGG | - | chr5_4:62026497-62026516 | None:intergenic | 45.0% | |
| TGCAATAGCAGATGTGTTGC+AGG | + | chr5_4:62027166-62027185 | Msa0862410:intron | 45.0% | |
| ATAGCAGATGTGTTGCAGGA+AGG | + | chr5_4:62027170-62027189 | Msa0862410:intron | 45.0% | |
| TCTGCAGTCGAAATTGTGAC+TGG | + | chr5_4:62027572-62027591 | Msa0862410:intron | 45.0% | |
| TGTGCCACCAAAGTAAGACA+TGG | + | chr5_4:62028319-62028338 | Msa0862410:intron | 45.0% | |
| CACACCATGTCTTACTTTGG+TGG | - | chr5_4:62028326-62028345 | None:intergenic | 45.0% | |
| GAAAGCAACGCCTAGATTTC+AGG | - | chr5_4:62029166-62029185 | None:intergenic | 45.0% | |
| TCATGTTTAGGGATCCGTCA+TGG | + | chr5_4:62029782-62029801 | Msa0862410:intron | 45.0% | |
| ! | GTTTTTCCTTGTGCAGGAAC+GGG | + | chr5_4:62030139-62030158 | Msa0862410:intron | 45.0% |
| ! | TTTTTCCTTGTGCAGGAACG+GGG | + | chr5_4:62030140-62030159 | Msa0862410:intron | 45.0% |
| GAAAGAAGACTACGTCTTGG+TGG | + | chr5_4:62030175-62030194 | Msa0862410:three_prime_UTR | 45.0% | |
| ! | GCGATGTTTTCCTTCACCAA+TGG | - | chr5_4:62030202-62030221 | None:intergenic | 45.0% |
| GAAGGAAAACATCGCAACCA+TGG | + | chr5_4:62030207-62030226 | Msa0862410:three_prime_UTR | 45.0% | |
| CTCTAACCTCTCAAGAACCA+TGG | - | chr5_4:62030227-62030246 | None:intergenic | 45.0% | |
| TTTCGGCAAGATGGGTGTTT+CGG | + | chr5_4:62030479-62030498 | Msa0862410:three_prime_UTR | 45.0% | |
| GGCTGAAAAGGGTTAGGGTT+TGG | - | chr5_4:62026491-62026510 | None:intergenic | 50.0% | |
| GCAGGAAGGAGAAGCTATTG+AGG | + | chr5_4:62027184-62027203 | Msa0862410:intron | 50.0% | |
| GCGATTCGTCATAGTTCCGA+TGG | + | chr5_4:62027710-62027729 | Msa0862410:intron | 50.0% | |
| ! | TATGTGCCACTGATAGAGGG+TGG | - | chr5_4:62029050-62029069 | None:intergenic | 50.0% |
| AGTAGTCCCCAACGACACTA+TGG | + | chr5_4:62029188-62029207 | Msa0862410:intron | 50.0% | |
| ! | TTTTCCTTGTGCAGGAACGG+GGG | + | chr5_4:62030141-62030160 | Msa0862410:intron | 50.0% |
| ! | ACTACGTCTTGGTGGTCCAT+TGG | + | chr5_4:62030183-62030202 | Msa0862410:three_prime_UTR | 50.0% |
| ! | TCTTGGTGGTCCATTGGTGA+AGG | + | chr5_4:62030189-62030208 | Msa0862410:three_prime_UTR | 50.0% |
| TCGCAACCATGGTTCTTGAG+AGG | + | chr5_4:62030218-62030237 | Msa0862410:three_prime_UTR | 50.0% | |
| ACGCAGTCTGTTACACTGGT+TGG | + | chr5_4:62030445-62030464 | Msa0862410:three_prime_UTR | 50.0% | |
| ! | CTGTTACACTGGTTGGACTG+AGG | + | chr5_4:62030452-62030471 | Msa0862410:three_prime_UTR | 50.0% |
| CTGAAAGAGAGAGAGGGTCG+CGG | + | chr5_4:62026324-62026343 | Msa0862410:five_prime_UTR | 55.0% | |
| TGAAAGAGAGAGAGGGTCGC+GGG | + | chr5_4:62026325-62026344 | Msa0862410:five_prime_UTR | 55.0% | |
| !! | GTGCAGATCGGAGTGTTGGA+CGG | - | chr5_4:62026398-62026417 | None:intergenic | 55.0% |
| ATCGGTGCAGATCGGAGTGT+TGG | - | chr5_4:62026402-62026421 | None:intergenic | 55.0% | |
| ATGGGGGCTGGGTTTGCAAT+TGG | + | chr5_4:62026591-62026610 | Msa0862410:CDS | 55.0% | |
| GATAGAGGGTGGCCAAGAGA+GGG | - | chr5_4:62029039-62029058 | None:intergenic | 55.0% | |
| TGATAGAGGGTGGCCAAGAG+AGG | - | chr5_4:62029040-62029059 | None:intergenic | 55.0% | |
| TCTTGGCCACCCTCTATCAG+TGG | + | chr5_4:62029041-62029060 | Msa0862410:intron | 55.0% | |
| AGTCCCCAACGACACTATGG+CGG | + | chr5_4:62029191-62029210 | Msa0862410:intron | 55.0% | |
| ! | AACCCGCCATAGTGTCGTTG+GGG | - | chr5_4:62029197-62029216 | None:intergenic | 55.0% |
| ! | CAACCCGCCATAGTGTCGTT+GGG | - | chr5_4:62029198-62029217 | None:intergenic | 55.0% |
| ACAACCCGCCATAGTGTCGT+TGG | - | chr5_4:62029199-62029218 | None:intergenic | 55.0% | |
| !! | AACGACACTATGGCGGGTTG+TGG | + | chr5_4:62029198-62029217 | Msa0862410:intron | 55.0% |
| ATGATCACAGCCACAGGTGC+TGG | + | chr5_4:62029814-62029833 | Msa0862410:intron | 55.0% | |
| ACAAGGACAGCATGTGCTGC+AGG | + | chr5_4:62030362-62030381 | Msa0862410:three_prime_UTR | 55.0% | |
| CAAGGACAGCATGTGCTGCA+GGG | + | chr5_4:62030363-62030382 | Msa0862410:three_prime_UTR | 55.0% | |
| CAGACTGCGTGCCTCTTCAA+TGG | - | chr5_4:62030435-62030454 | None:intergenic | 55.0% | |
| AGGCACGCAGTCTGTTACAC+TGG | + | chr5_4:62030441-62030460 | Msa0862410:three_prime_UTR | 55.0% | |
| ! | TACACTGGTTGGACTGAGGC+AGG | + | chr5_4:62030456-62030475 | Msa0862410:three_prime_UTR | 55.0% |
| GGTTGGACTGAGGCAGGTTT+CGG | + | chr5_4:62030462-62030481 | Msa0862410:three_prime_UTR | 55.0% | |
| TGAGGCAGGTTTCGGCAAGA+TGG | + | chr5_4:62030470-62030489 | Msa0862410:three_prime_UTR | 55.0% | |
| GAGGCAGGTTTCGGCAAGAT+GGG | + | chr5_4:62030471-62030490 | Msa0862410:three_prime_UTR | 55.0% | |
| GGGGCTGGGTTTGCAATTGG+AGG | + | chr5_4:62026594-62026613 | Msa0862410:CDS | 60.0% | |
| GTCCCCAACGACACTATGGC+GGG | + | chr5_4:62029192-62029211 | Msa0862410:intron | 60.0% | |
| !! | GACACTATGGCGGGTTGTGG+TGG | + | chr5_4:62029201-62029220 | Msa0862410:intron | 60.0% |
| AGAGGGTCGCCGGGAGAGAA+AGG | + | chr5_4:62026353-62026372 | Msa0862410:five_prime_UTR | 65.0% | |
| GAGGGTCGCCGGGAGAGAAA+GGG | + | chr5_4:62026354-62026373 | Msa0862410:five_prime_UTR | 65.0% | |
| GTGTTGGACGGCGAGGTCGA+CGG | - | chr5_4:62026386-62026405 | None:intergenic | 65.0% | |
| !! | GATCGGAGTGTTGGACGGCG+AGG | - | chr5_4:62026393-62026412 | None:intergenic | 65.0% |
| GCAACGTGGACCAGCACCTG+TGG | - | chr5_4:62029827-62029846 | None:intergenic | 65.0% | |
| TGGTCCCCCGTTCCTGCACA+AGG | - | chr5_4:62030148-62030167 | None:intergenic | 65.0% | |
| GGACAGCATGTGCTGCAGGG+TGG | + | chr5_4:62030366-62030385 | Msa0862410:three_prime_UTR | 65.0% | |
| GAGAGAGAGGGTCGCGGGAG+AGG | + | chr5_4:62026330-62026349 | Msa0862410:five_prime_UTR | 70.0% | |
| AGAGGGTCGCGGGAGAGGAG+AGG | + | chr5_4:62026335-62026354 | Msa0862410:five_prime_UTR | 70.0% | |
| GAGGGTCGCGGGAGAGGAGA+GGG | + | chr5_4:62026336-62026355 | Msa0862410:five_prime_UTR | 70.0% | |
| GGCGGCGACCCTTTCTCTCC+CGG | - | chr5_4:62026365-62026384 | None:intergenic | 70.0% | |
| TTGGACGGCGAGGTCGACGG+CGG | - | chr5_4:62026383-62026402 | None:intergenic | 70.0% | |
| GCGGGAGAGGAGAGGGTCGC+CGG | + | chr5_4:62026343-62026362 | Msa0862410:five_prime_UTR | 75.0% | |
| CGGGAGAGGAGAGGGTCGCC+GGG | + | chr5_4:62026344-62026363 | Msa0862410:five_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 62026316 | 62030692 | 62026316 | ID=Msa0862410;Name=Msa0862410 |
| chr5_4 | mRNA | 62026316 | 62030692 | 62026316 | ID=Msa0862410-mRNA-1;Parent=Msa0862410;Name=Msa0862410-mRNA-1;_AED=0.36;_eAED=0.36;_QI=189|0.75|0.8|1|0|0.2|5|426|28 |
| chr5_4 | exon | 62026316 | 62026447 | 62026316 | ID=Msa0862410-mRNA-1:exon:19305;Parent=Msa0862410-mRNA-1 |
| chr5_4 | exon | 62026534 | 62026637 | 62026534 | ID=Msa0862410-mRNA-1:exon:19306;Parent=Msa0862410-mRNA-1 |
| chr5_4 | exon | 62026967 | 62027004 | 62026967 | ID=Msa0862410-mRNA-1:exon:19307;Parent=Msa0862410-mRNA-1 |
| chr5_4 | exon | 62030155 | 62030239 | 62030155 | ID=Msa0862410-mRNA-1:exon:19308;Parent=Msa0862410-mRNA-1 |
| chr5_4 | exon | 62030350 | 62030692 | 62030350 | ID=Msa0862410-mRNA-1:exon:19309;Parent=Msa0862410-mRNA-1 |
| chr5_4 | five_prime_UTR | 62026316 | 62026447 | 62026316 | ID=Msa0862410-mRNA-1:five_prime_utr;Parent=Msa0862410-mRNA-1 |
| chr5_4 | five_prime_UTR | 62026534 | 62026590 | 62026534 | ID=Msa0862410-mRNA-1:five_prime_utr;Parent=Msa0862410-mRNA-1 |
| chr5_4 | CDS | 62026591 | 62026637 | 62026591 | ID=Msa0862410-mRNA-1:cds;Parent=Msa0862410-mRNA-1 |
| chr5_4 | CDS | 62026967 | 62027004 | 62026967 | ID=Msa0862410-mRNA-1:cds;Parent=Msa0862410-mRNA-1 |
| chr5_4 | CDS | 62030155 | 62030156 | 62030155 | ID=Msa0862410-mRNA-1:cds;Parent=Msa0862410-mRNA-1 |
| chr5_4 | three_prime_UTR | 62030157 | 62030239 | 62030157 | ID=Msa0862410-mRNA-1:three_prime_utr;Parent=Msa0862410-mRNA-1 |
| chr5_4 | three_prime_UTR | 62030350 | 62030692 | 62030350 | ID=Msa0862410-mRNA-1:three_prime_utr;Parent=Msa0862410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
