Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443590 | KEH38098.1 | 65.789 | 76 | 6 | 1 | 1 | 76 | 63 | 118 | 9.91e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443590 | A0A072V9M6 | 65.789 | 76 | 6 | 1 | 1 | 76 | 63 | 118 | 4.73e-20 | 88.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196090 | Msa0443590 | 0.859078 | 5.305218e-63 | -8.615850e-47 |
| Msa0443590 | Msa0862410 | 0.821727 | 3.462742e-53 | -8.615850e-47 |
| Msa0443590 | Msa1359930 | 0.840832 | 6.858070e-58 | -8.615850e-47 |
| Msa0443590 | Msa1466190 | 0.828530 | 8.542305e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443590 | MtrunA17_Chr2g0305081 | 52.941 | 102 | 22 | 2 | 1 | 76 | 12 | 113 | 8.63e-23 | 85.5 |
| Msa0443590 | MtrunA17_Chr3g0115191 | 88.095 | 42 | 5 | 0 | 1 | 42 | 280 | 321 | 1.53e-17 | 77.0 |
| Msa0443590 | MtrunA17_Chr5g0424661 | 83.333 | 42 | 7 | 0 | 2 | 43 | 280 | 321 | 4.44e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443590 | AT1G36990.1 | 53.968 | 63 | 20 | 1 | 1 | 63 | 275 | 328 | 3.16e-13 | 65.1 |
Find 65 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGTAATTTGTGCATTAT+TGG | 0.225543 | 3_3:-14882544 | Msa0443590:three_prime_UTR |
| TGCATTATTGGTTCCTTCAT+TGG | 0.240192 | 3_3:-14882532 | Msa0443590:three_prime_UTR |
| AGAAAGCTTAATTGAAAGTA+TGG | 0.246651 | 3_3:-14888006 | Msa0443590:five_prime_UTR |
| ATTAGAAGCAAAGGAAATTA+AGG | 0.271373 | 3_3:-14888152 | Msa0443590:intron |
| ATAATTAAGATGAAACTAAT+TGG | 0.284724 | 3_3:+14882507 | None:intergenic |
| TAGCAAGTTCTTCAAGCCTT+TGG | 0.295788 | 3_3:+14884509 | None:intergenic |
| AAATGATGCCGCTGAGATTA+AGG | 0.307981 | 3_3:-14883326 | Msa0443590:intron |
| GAGGAAGAAACAAGAAGAAT+TGG | 0.332205 | 3_3:-14887965 | Msa0443590:five_prime_UTR |
| TTGTTGTTCTTAGAATAAAA+AGG | 0.336964 | 3_3:-14887801 | Msa0443590:intron |
| AGCAAGTTCTTCAAGCCTTT+GGG | 0.357377 | 3_3:+14884510 | None:intergenic |
| GGTTGGACTGAGGCAGGTTT+CGG | 0.378173 | 3_3:-14882615 | Msa0443590:exon |
| GTAGTCTTCTTTCAAATGTA+TGG | 0.378293 | 3_3:+14882912 | None:intergenic |
| TTTCGGCAAGATGGGTGTTT+CGG | 0.388400 | 3_3:-14882598 | Msa0443590:three_prime_UTR |
| GAGAGAGAGGGTCGCGGGAG+AGG | 0.406651 | 3_3:-14888248 | Msa0443590:five_prime_UTR |
| GCGGGAGAGGAGAGGATCGC+CGG | 0.430957 | 3_3:-14888235 | Msa0443590:five_prime_UTR |
| AGAGGATCGCCGGGAGAGAA+TGG | 0.442108 | 3_3:-14888225 | Msa0443590:five_prime_UTR |
| ACCGTCAATACCTAAGGCTT+TGG | 0.443243 | 3_3:-14884455 | Msa0443590:intron |
| TTAGGTATTGACGGTGTCAC+TGG | 0.459042 | 3_3:+14884463 | None:intergenic |
| TACACTGGTTGGACTGAGGC+AGG | 0.459434 | 3_3:-14882621 | Msa0443590:exon |
| AGTTTACTCACCAAAGCCTT+AGG | 0.461179 | 3_3:+14884445 | None:intergenic |
| CCTTTGCTTCTAATGCAAAT+CGG | 0.462785 | 3_3:+14888161 | None:intergenic |
| GAAAGCTTAATTGAAAGTAT+GGG | 0.474338 | 3_3:-14888005 | Msa0443590:five_prime_UTR |
| AAACTAATTGGAACCAATGA+AGG | 0.474797 | 3_3:+14882519 | None:intergenic |
| GGAGATTTAAGAAGATATGA+AGG | 0.474849 | 3_3:-14887780 | Msa0443590:intron |
| CTTTGATAAATACTTTAGAA+AGG | 0.476087 | 3_3:-14882436 | Msa0443590:three_prime_UTR |
| GAAGAAACAAGAAGAATTGG+AGG | 0.484939 | 3_3:-14887962 | Msa0443590:intron |
| TGAGGCAGGTTTCGGCAAGA+TGG | 0.486601 | 3_3:-14882607 | Msa0443590:three_prime_UTR |
| TGAAAGAGAGAGAGGGTCGC+GGG | 0.486825 | 3_3:-14888253 | Msa0443590:five_prime_UTR |
| AGGCACGCAGTCTGTTACAC+TGG | 0.491245 | 3_3:-14882636 | Msa0443590:CDS |
| GGGGCTGGGTTTGCAATTGG+AGG | 0.496777 | 3_3:-14887984 | Msa0443590:five_prime_UTR |
| GAGGATCGCCGGGAGAGAAT+GGG | 0.498115 | 3_3:-14888224 | Msa0443590:five_prime_UTR |
| CTGAAAGAGAGAGAGGGTCG+CGG | 0.505347 | 3_3:-14888254 | Msa0443590:five_prime_UTR |
| CAGACTGCGTGCCTCTTCAA+TGG | 0.510928 | 3_3:+14882645 | None:intergenic |
| ATCGGTGCAGATCGGAGTGT+TGG | 0.515737 | 3_3:+14888179 | None:intergenic |
| ACAAGGACAGCATGTGCTGC+AGG | 0.526864 | 3_3:-14882715 | Msa0443590:CDS |
| TCGATCTCAGTCAATTCCTC+AGG | 0.527039 | 3_3:-14884645 | Msa0443590:intron |
| ACCAAAGCCTTAGGTATTGA+CGG | 0.527928 | 3_3:+14884454 | None:intergenic |
| GAGGCAGGTTTCGGCAAGAT+GGG | 0.538244 | 3_3:-14882606 | Msa0443590:three_prime_UTR |
| TGCAGTCAATTCTCTGTACA+AGG | 0.540808 | 3_3:-14882732 | Msa0443590:intron |
| GTGTTGGACGGCGAGGTCGA+CGG | 0.546335 | 3_3:+14888195 | None:intergenic |
| GAAAGAAGACTACGTCTTGG+TGG | 0.549879 | 3_3:-14882902 | Msa0443590:intron |
| CCGATTTGCATTAGAAGCAA+AGG | 0.550622 | 3_3:-14888161 | Msa0443590:five_prime_UTR |
| CGGGAGAGGAGAGGATCGCC+GGG | 0.552488 | 3_3:-14888234 | Msa0443590:five_prime_UTR |
| AAAGCTTAATTGAAAGTATG+GGG | 0.553492 | 3_3:-14888004 | Msa0443590:five_prime_UTR |
| GGCGGCGACCCATTCTCTCC+CGG | 0.560415 | 3_3:+14888216 | None:intergenic |
| AGAGGGTCGCGGGAGAGGAG+AGG | 0.576954 | 3_3:-14888243 | Msa0443590:five_prime_UTR |
| AGAAGAGCTGAAAGAGAGAG+AGG | 0.580586 | 3_3:-14888261 | Msa0443590:five_prime_UTR |
| AGTATTTATCAAAGCATCAA+AGG | 0.582726 | 3_3:+14882445 | None:intergenic |
| AGAAAGAGCAACCATTGAAG+AGG | 0.585732 | 3_3:-14882656 | Msa0443590:CDS |
| AGTGACACCGTCAATACCTA+AGG | 0.590553 | 3_3:-14884461 | Msa0443590:CDS |
| TTTGAAAGAAGACTACGTCT+TGG | 0.593120 | 3_3:-14882905 | Msa0443590:CDS |
| ACGCAGTCTGTTACACTGGT+TGG | 0.593852 | 3_3:-14882632 | Msa0443590:CDS |
| CTATTAAGCAGTCAAGACAA+TGG | 0.604644 | 3_3:-14884489 | Msa0443590:CDS |
| GGAATTGACTGAGATCGAGA+TGG | 0.610281 | 3_3:+14884650 | None:intergenic |
| TAATGCAAATCGGTGCAGAT+CGG | 0.610433 | 3_3:+14888171 | None:intergenic |
| GATCGGAGTGTTGGACGGCG+AGG | 0.614383 | 3_3:+14888188 | None:intergenic |
| AGGTTTCGGTCAAAACCCAA+AGG | 0.617561 | 3_3:-14884525 | Msa0443590:CDS |
| GTGCAGATCGGAGTGTTGGA+CGG | 0.620791 | 3_3:+14888183 | None:intergenic |
| GAAGAGCTGAAAGAGAGAGA+GGG | 0.635681 | 3_3:-14888260 | Msa0443590:five_prime_UTR |
| CAAGGACAGCATGTGCTGCA+GGG | 0.666583 | 3_3:-14882714 | Msa0443590:CDS |
| CTGTTACACTGGTTGGACTG+AGG | 0.672284 | 3_3:-14882625 | Msa0443590:exon |
| TTGGACGGCGAGGTCGACGG+CGG | 0.673722 | 3_3:+14888198 | None:intergenic |
| AAGCTTAATTGAAAGTATGG+GGG | 0.683305 | 3_3:-14888003 | Msa0443590:five_prime_UTR |
| TCAGCTTACCTTAATCTCAG+CGG | 0.688887 | 3_3:+14883318 | None:intergenic |
| GGACAGCATGTGCTGCAGGG+TGG | 0.776953 | 3_3:-14882711 | Msa0443590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAATTATGATCATTA+TGG | - | chr3_3:14883545-14883564 | Msa0443590:intron | 10.0% |
| !!! | TTTGATTATTGATTTTTTAT+CGG | - | chr3_3:14884875-14884894 | Msa0443590:intron | 10.0% |
| !!! | AATATGTTTTTTTTTTTGAA+TGG | - | chr3_3:14884976-14884995 | Msa0443590:intron | 10.0% |
| !!! | ATGAAGATAATTTTTTTTTT+TGG | - | chr3_3:14885148-14885167 | Msa0443590:intron | 10.0% |
| !!! | TATCATTCTTTTAAATATAA+TGG | - | chr3_3:14886088-14886107 | Msa0443590:intron | 10.0% |
| !!! | TTTTTTTTTTTTAAGTTTGT+TGG | + | chr3_3:14887112-14887131 | None:intergenic | 10.0% |
| !! | TTCATTAAGAAATTGAAATT+GGG | + | chr3_3:14882616-14882635 | None:intergenic | 15.0% |
| !! | AATTTCAATTTCTTAATGAA+GGG | - | chr3_3:14882616-14882635 | Msa0443590:exon | 15.0% |
| !!! | AATTTAATGTTGATGATAAT+TGG | - | chr3_3:14882944-14882963 | Msa0443590:intron | 15.0% |
| !!! | ACTGTACTATTTTATATATA+AGG | - | chr3_3:14883010-14883029 | Msa0443590:intron | 15.0% |
| !!! | TTAAATGAGGTTTTATTATT+TGG | - | chr3_3:14883776-14883795 | Msa0443590:intron | 15.0% |
| !!! | TTCTGAATAATATTTGATTT+TGG | - | chr3_3:14883984-14884003 | Msa0443590:intron | 15.0% |
| !!! | ATAATATTTGATTTTGGTTT+TGG | - | chr3_3:14883990-14884009 | Msa0443590:intron | 15.0% |
| !! | ACAATTTCAAATTCAATATA+TGG | - | chr3_3:14884174-14884193 | Msa0443590:intron | 15.0% |
| !! | AATCAAACAAATTGATATTA+AGG | + | chr3_3:14884825-14884844 | None:intergenic | 15.0% |
| !!! | ATATTTTGTTAATTGCTATA+TGG | - | chr3_3:14885446-14885465 | Msa0443590:intron | 15.0% |
| !!! | TACATTTGATTTTATTCTTT+AGG | - | chr3_3:14885791-14885810 | Msa0443590:intron | 15.0% |
| !!! | TAATTTTAAATTTATGTGCA+GGG | + | chr3_3:14885938-14885957 | None:intergenic | 15.0% |
| !! | AATAAATACTAAACAACATA+TGG | + | chr3_3:14886727-14886746 | None:intergenic | 15.0% |
| !! | AATGAAACAATAAAAAAAGA+GGG | + | chr3_3:14886801-14886820 | None:intergenic | 15.0% |
| !! | TAATGAAACAATAAAAAAAG+AGG | + | chr3_3:14886802-14886821 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATTCTAAATTTG+TGG | + | chr3_3:14887586-14887605 | None:intergenic | 15.0% |
| !! | TAAAACAAAATTAATCTTGT+AGG | + | chr3_3:14887672-14887691 | None:intergenic | 15.0% |
| !! | ATAATTAAGATGAAACTAAT+TGG | + | chr3_3:14888177-14888196 | None:intergenic | 15.0% |
| !! | TCATTAAGAAATTGAAATTG+GGG | + | chr3_3:14882615-14882634 | None:intergenic | 20.0% |
| !! | CTTCATTAAGAAATTGAAAT+TGG | + | chr3_3:14882617-14882636 | None:intergenic | 20.0% |
| !! | CAATTTCAATTTCTTAATGA+AGG | - | chr3_3:14882615-14882634 | Msa0443590:exon | 20.0% |
| !!! | TTGTTGTTCTTAGAATAAAA+AGG | - | chr3_3:14882880-14882899 | Msa0443590:intron | 20.0% |
| !!! | TGAGTAAATTTTTGTAAGTT+TGG | - | chr3_3:14883119-14883138 | Msa0443590:intron | 20.0% |
| !! | AAATGAAGTATACTTCATAT+TGG | + | chr3_3:14883398-14883417 | None:intergenic | 20.0% |
| !!! | GTTAAATTTTCTGGATAAAA+AGG | + | chr3_3:14883498-14883517 | None:intergenic | 20.0% |
| !! | TGAATTATATGCAATGATTA+TGG | - | chr3_3:14883950-14883969 | Msa0443590:intron | 20.0% |
| !! | ATAAATTCAAACAACAAAAG+AGG | + | chr3_3:14884025-14884044 | None:intergenic | 20.0% |
| !!! | GTCATTTATAATTTTCTTCA+AGG | + | chr3_3:14884251-14884270 | None:intergenic | 20.0% |
| !! | AATTATAAATGACCAAATCA+AGG | - | chr3_3:14884258-14884277 | Msa0443590:intron | 20.0% |
| !!! | GGTTAGTTATAGATTAATAT+TGG | - | chr3_3:14884279-14884298 | Msa0443590:intron | 20.0% |
| !! | ATATATTGAATGCATAATGA+TGG | + | chr3_3:14884595-14884614 | None:intergenic | 20.0% |
| !!! | AAAAGCATAAACTATTACAA+AGG | + | chr3_3:14884643-14884662 | None:intergenic | 20.0% |
| !!! | TTTGGATGATTTTGTATTAT+CGG | - | chr3_3:14884943-14884962 | Msa0443590:intron | 20.0% |
| !!! | TGAATATGAATTTGGTTTTA+TGG | - | chr3_3:14885013-14885032 | Msa0443590:intron | 20.0% |
| !!! | GAATATGAATTTGGTTTTAT+GGG | - | chr3_3:14885014-14885033 | Msa0443590:intron | 20.0% |
| !!! | GTTTCTTTTTTTTTGATGTA+TGG | - | chr3_3:14885036-14885055 | Msa0443590:intron | 20.0% |
| !!! | TTTTTTGATGTATGGTTTTA+TGG | - | chr3_3:14885044-14885063 | Msa0443590:intron | 20.0% |
| !!! | TTTTTGATGTATGGTTTTAT+GGG | - | chr3_3:14885045-14885064 | Msa0443590:intron | 20.0% |
| !!! | TAATTTTTTTTTTTGGTAGC+TGG | - | chr3_3:14885155-14885174 | Msa0443590:intron | 20.0% |
| !!! | ATTTTGAATTCTGTGTTTTT+AGG | - | chr3_3:14885179-14885198 | Msa0443590:intron | 20.0% |
| !!! | TTTAGGATTTGTTTAGTTTT+AGG | - | chr3_3:14885196-14885215 | Msa0443590:intron | 20.0% |
| !! | TAGGTATCAATCATATAAAA+TGG | - | chr3_3:14885215-14885234 | Msa0443590:intron | 20.0% |
| !! | ATCAATCATATAAAATGGTT+AGG | - | chr3_3:14885220-14885239 | Msa0443590:intron | 20.0% |
| !! | TCAATCATATAAAATGGTTA+GGG | - | chr3_3:14885221-14885240 | Msa0443590:intron | 20.0% |
| !! | ATCATAAAGTAATTGAAATC+TGG | + | chr3_3:14885321-14885340 | None:intergenic | 20.0% |
| !! | TTCAATTACTTTATGATGAT+AGG | - | chr3_3:14885324-14885343 | Msa0443590:intron | 20.0% |
| !!! | ATATCTGAAATCATGATTTT+TGG | + | chr3_3:14885565-14885584 | None:intergenic | 20.0% |
| !!! | ACATGATTTTTTTAACACAA+TGG | - | chr3_3:14885619-14885638 | Msa0443590:intron | 20.0% |
| !! | AATTTCTATCATTATATACC+AGG | + | chr3_3:14885729-14885748 | None:intergenic | 20.0% |
| !!! | CTAATTTTAAATTTATGTGC+AGG | + | chr3_3:14885939-14885958 | None:intergenic | 20.0% |
| !! | TCTTTATGCTTGAAAAATAT+TGG | - | chr3_3:14887045-14887064 | Msa0443590:intron | 20.0% |
| !!! | ATGACCTTGTTTAAATAAAT+AGG | + | chr3_3:14887895-14887914 | None:intergenic | 20.0% |
| !!! | AATTGTAATTTGTGCATTAT+TGG | - | chr3_3:14888137-14888156 | Msa0443590:intron | 20.0% |
| !!! | AATTATTATGTTGTTTTCCT+TGG | - | chr3_3:14888191-14888210 | Msa0443590:five_prime_UTR | 20.0% |
| !!! | CTTTGATAAATACTTTAGAA+AGG | - | chr3_3:14888245-14888264 | Msa0443590:five_prime_UTR | 20.0% |
| ! | ATTAGAAGCAAAGGAAATTA+AGG | - | chr3_3:14882529-14882548 | Msa0443590:three_prime_UTR | 25.0% |
| ! | AGAAAGCTTAATTGAAAGTA+TGG | - | chr3_3:14882675-14882694 | Msa0443590:CDS | 25.0% |
| !! | GAAAGCTTAATTGAAAGTAT+GGG | - | chr3_3:14882676-14882695 | Msa0443590:CDS | 25.0% |
| !! | AAAGCTTAATTGAAAGTATG+GGG | - | chr3_3:14882677-14882696 | Msa0443590:CDS | 25.0% |
| !! | GTAAATTTTTGTACAAGTGA+TGG | - | chr3_3:14882741-14882760 | Msa0443590:intron | 25.0% |
| ! | ACACATGAGATATATCAATA+TGG | + | chr3_3:14882824-14882843 | None:intergenic | 25.0% |
| !!! | TATATAAGGTGATTTTGATC+TGG | - | chr3_3:14883024-14883043 | Msa0443590:intron | 25.0% |
| ! | ACATTCAATCCAAAGAATTA+TGG | + | chr3_3:14883093-14883112 | None:intergenic | 25.0% |
| ! | ATTTCTGTAAAATTTGAGTG+TGG | - | chr3_3:14883148-14883167 | Msa0443590:intron | 25.0% |
| !! | GTGTTTTATAAGGTTTTCTT+TGG | - | chr3_3:14883242-14883261 | Msa0443590:intron | 25.0% |
| !!! | CAAGTTTTGGTTAAATTTTC+TGG | + | chr3_3:14883507-14883526 | None:intergenic | 25.0% |
| !!! | AATCTGTTTGTTTTTGTGTT+TGG | - | chr3_3:14884053-14884072 | Msa0443590:intron | 25.0% |
| ! | TTGTTGAAATGTTGAAAACT+TGG | - | chr3_3:14884093-14884112 | Msa0443590:intron | 25.0% |
| !! | GGAGTTTTTACTTGAAAAAT+TGG | - | chr3_3:14884128-14884147 | Msa0443590:intron | 25.0% |
| !!! | TTCTGGTAATGATTTTGTAA+AGG | - | chr3_3:14884204-14884223 | Msa0443590:intron | 25.0% |
| ! | ATCTATAACTAACCTTGATT+TGG | + | chr3_3:14884273-14884292 | None:intergenic | 25.0% |
| ! | TTAGCTTATTCATGTCTTAA+AGG | - | chr3_3:14884315-14884334 | Msa0443590:intron | 25.0% |
| ! | AAGAACTAGAAGACATAAAA+TGG | - | chr3_3:14884454-14884473 | Msa0443590:intron | 25.0% |
| ! | ACAGAGAATCATAAGAAAAA+GGG | - | chr3_3:14884505-14884524 | Msa0443590:CDS | 25.0% |
| ! | ATTGAAAAATTTGCATCATG+AGG | - | chr3_3:14884552-14884571 | Msa0443590:intron | 25.0% |
| ! | GGAAAATGATAACTATTACA+CGG | + | chr3_3:14884622-14884641 | None:intergenic | 25.0% |
| ! | AGTCTATGTTAATTATACAC+TGG | - | chr3_3:14884690-14884709 | Msa0443590:intron | 25.0% |
| ! | TTGAAGTAATTAAGCAACTT+TGG | + | chr3_3:14884744-14884763 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGAAATTTTGCGC+TGG | - | chr3_3:14884850-14884869 | Msa0443590:intron | 25.0% |
| !!! | TTTTTTTGAAATTTTGCGCT+GGG | - | chr3_3:14884851-14884870 | Msa0443590:intron | 25.0% |
| !!! | GATTATTGATTTTTTATCGG+TGG | - | chr3_3:14884878-14884897 | Msa0443590:intron | 25.0% |
| !! | AAAATTGAGAATTGGTTTAG+TGG | - | chr3_3:14884903-14884922 | Msa0443590:intron | 25.0% |
| !! | AAATTGAGAATTGGTTTAGT+GGG | - | chr3_3:14884904-14884923 | Msa0443590:intron | 25.0% |
| !! | TTTTTGAATGGCAAATATGT+TGG | - | chr3_3:14884988-14885007 | Msa0443590:intron | 25.0% |
| !!! | TGTTGGTTTGAATATGAATT+TGG | - | chr3_3:14885005-14885024 | Msa0443590:intron | 25.0% |
| ! | CAATCATATAAAATGGTTAG+GGG | - | chr3_3:14885222-14885241 | Msa0443590:intron | 25.0% |
| ! | AAGAAAGATATAGAGATTAG+TGG | - | chr3_3:14885388-14885407 | Msa0443590:intron | 25.0% |
| ! | TATCTTCCAAAACTATAGAA+AGG | - | chr3_3:14885479-14885498 | Msa0443590:intron | 25.0% |
| !! | TGTTGTTGTTGAGTTTAAAA+CGG | + | chr3_3:14885516-14885535 | None:intergenic | 25.0% |
| !!! | TTGGTTGATGTTATTTTTCA+TGG | + | chr3_3:14885546-14885565 | None:intergenic | 25.0% |
| ! | AAGAAGTAATAACCAGTATA+TGG | + | chr3_3:14885704-14885723 | None:intergenic | 25.0% |
| !!! | TTTTCCATAAAAAGCATCTA+AGG | + | chr3_3:14885756-14885775 | None:intergenic | 25.0% |
| ! | ATATAGCAATGATATAAGCA+AGG | + | chr3_3:14885842-14885861 | None:intergenic | 25.0% |
| ! | ATAATGTGTATATCCATTGT+AGG | - | chr3_3:14886136-14886155 | Msa0443590:intron | 25.0% |
| ! | TTGCTTCTTGCTTAAATTTA+TGG | - | chr3_3:14886687-14886706 | Msa0443590:intron | 25.0% |
| ! | AACAATAAAAAAAGAGGGAT+GGG | + | chr3_3:14886796-14886815 | None:intergenic | 25.0% |
| ! | AAACAATAAAAAAAGAGGGA+TGG | + | chr3_3:14886797-14886816 | None:intergenic | 25.0% |
| ! | TTAAGTTCTGTTATGGTAAA+TGG | - | chr3_3:14886942-14886961 | Msa0443590:intron | 25.0% |
| ! | TGACATAATTATAGCAGAAA+TGG | + | chr3_3:14886982-14887001 | None:intergenic | 25.0% |
| ! | CATGCAAAGAATAAATCATA+TGG | + | chr3_3:14887555-14887574 | None:intergenic | 25.0% |
| !! | AAAAAAGTATGTTGAAAGCT+TGG | - | chr3_3:14887599-14887618 | Msa0443590:intron | 25.0% |
| !! | CCTTGTTTAAATAAATAGGT+TGG | + | chr3_3:14887891-14887910 | None:intergenic | 25.0% |
| ! | CCAACCTATTTATTTAAACA+AGG | - | chr3_3:14887888-14887907 | Msa0443590:intron | 25.0% |
| !! | AGTATTTATCAAAGCATCAA+AGG | + | chr3_3:14888239-14888258 | None:intergenic | 25.0% |
| ! | AAGCTTAATTGAAAGTATGG+GGG | - | chr3_3:14882678-14882697 | Msa0443590:CDS | 30.0% |
| GGTAAATCATTTCTGTTGAA+TGG | - | chr3_3:14882762-14882781 | Msa0443590:intron | 30.0% | |
| GGAGATTTAAGAAGATATGA+AGG | - | chr3_3:14882901-14882920 | Msa0443590:intron | 30.0% | |
| GTTGTTTAAGCACCTTAAAA+TGG | - | chr3_3:14882975-14882994 | Msa0443590:intron | 30.0% | |
| ! | GTCACGAAAAATCCATTTTA+AGG | + | chr3_3:14882990-14883009 | None:intergenic | 30.0% |
| TTCTTTGGATTGAATGTTAG+AGG | - | chr3_3:14883096-14883115 | Msa0443590:intron | 30.0% | |
| !! | TAATCATGAAACTAGCTCTA+TGG | - | chr3_3:14883186-14883205 | Msa0443590:intron | 30.0% |
| !! | AATCATGAAACTAGCTCTAT+GGG | - | chr3_3:14883187-14883206 | Msa0443590:intron | 30.0% |
| ! | TCTCTGTTGTGTGTTTTATA+AGG | - | chr3_3:14883232-14883251 | Msa0443590:intron | 30.0% |
| CAGCATTGTATATGCATAAA+AGG | + | chr3_3:14883731-14883750 | None:intergenic | 30.0% | |
| TTAGTTGTGTGTCTTAAATG+AGG | - | chr3_3:14883763-14883782 | Msa0443590:intron | 30.0% | |
| !!! | TGGAATTGTTTTGAAACCAT+CGG | + | chr3_3:14883836-14883855 | None:intergenic | 30.0% |
| ATTCCTACAAGTTTGAAGAA+TGG | + | chr3_3:14883872-14883891 | None:intergenic | 30.0% | |
| !!! | ATTTGATTTTGGTTTTGGCT+TGG | - | chr3_3:14883995-14884014 | Msa0443590:intron | 30.0% |
| AAAACTTGGAACAGATTAGA+GGG | - | chr3_3:14884107-14884126 | Msa0443590:intron | 30.0% | |
| TTTCTTCAAGGATTCATAGT+TGG | + | chr3_3:14884239-14884258 | None:intergenic | 30.0% | |
| !! | CTTTTGAAAAGAGAAGAGAA+TGG | - | chr3_3:14884397-14884416 | Msa0443590:intron | 30.0% |
| GACAGAGAATCATAAGAAAA+AGG | - | chr3_3:14884504-14884523 | Msa0443590:CDS | 30.0% | |
| TTAACATAGACTCATAGCTA+TGG | + | chr3_3:14884682-14884701 | None:intergenic | 30.0% | |
| TTATACACTGGAGACTATAT+AGG | - | chr3_3:14884702-14884721 | Msa0443590:intron | 30.0% | |
| ! | TGATTTTGTATTATCGGTGT+TGG | - | chr3_3:14884949-14884968 | Msa0443590:intron | 30.0% |
| TTCGTCAGATTTGATGAAAT+TGG | - | chr3_3:14885089-14885108 | Msa0443590:intron | 30.0% | |
| TCGTCAGATTTGATGAAATT+GGG | - | chr3_3:14885090-14885109 | Msa0443590:intron | 30.0% | |
| ! | TCTCTATGAATCAGTTGATA+TGG | - | chr3_3:14885273-14885292 | Msa0443590:intron | 30.0% |
| ! | GGAATTTGTTCAGATTTGTT+TGG | - | chr3_3:14885409-14885428 | Msa0443590:intron | 30.0% |
| ! | GAAGTTCCTTTCTATAGTTT+TGG | + | chr3_3:14885488-14885507 | None:intergenic | 30.0% |
| ! | GTTGTTGTTGAGTTTAAAAC+GGG | + | chr3_3:14885515-14885534 | None:intergenic | 30.0% |
| !!! | GTTGATGTTATTTTTCATGG+AGG | + | chr3_3:14885543-14885562 | None:intergenic | 30.0% |
| TGGCAGACAAAAAATAGAAT+TGG | + | chr3_3:14885657-14885676 | None:intergenic | 30.0% | |
| ! | TTTTTGTCTGCCATTCTTAT+AGG | - | chr3_3:14885664-14885683 | Msa0443590:intron | 30.0% |
| ! | TGGTTTGTAAATCCATATAC+TGG | - | chr3_3:14885689-14885708 | Msa0443590:intron | 30.0% |
| !! | ATGTCCTTAGATGCTTTTTA+TGG | - | chr3_3:14885749-14885768 | Msa0443590:intron | 30.0% |
| ! | CTTTTTATGGAAAATGTCGT+CGG | - | chr3_3:14885762-14885781 | Msa0443590:intron | 30.0% |
| GAATTTGATGCAGAAATAGT+GGG | + | chr3_3:14885904-14885923 | None:intergenic | 30.0% | |
| AGAATTTGATGCAGAAATAG+TGG | + | chr3_3:14885905-14885924 | None:intergenic | 30.0% | |
| TAAAATTAGTTACTTCCCTC+TGG | - | chr3_3:14885950-14885969 | Msa0443590:intron | 30.0% | |
| AAAATTAGTTACTTCCCTCT+GGG | - | chr3_3:14885951-14885970 | Msa0443590:intron | 30.0% | |
| TGGATATACACATTATTAGC+TGG | + | chr3_3:14886132-14886151 | None:intergenic | 30.0% | |
| TGTATATCCATTGTAGGTTT+CGG | - | chr3_3:14886142-14886161 | Msa0443590:intron | 30.0% | |
| GTTGTTTGAATTGCGAAAAT+TGG | - | chr3_3:14886337-14886356 | Msa0443590:intron | 30.0% | |
| ! | TCCATTTCTTTTTCTTGCTA+TGG | - | chr3_3:14886420-14886439 | Msa0443590:intron | 30.0% |
| TTAAAATCGATGCTTTACTG+AGG | - | chr3_3:14886503-14886522 | Msa0443590:intron | 30.0% | |
| TAAAATCGATGCTTTACTGA+GGG | - | chr3_3:14886504-14886523 | Msa0443590:intron | 30.0% | |
| CATAATCAAACCTGAAATCT+AGG | - | chr3_3:14886865-14886884 | Msa0443590:intron | 30.0% | |
| !!! | GCAGATTTTAAGTTCTGTTA+TGG | - | chr3_3:14886935-14886954 | Msa0443590:intron | 30.0% |
| ATAATTATAGCAGAAATGGC+AGG | + | chr3_3:14886978-14886997 | None:intergenic | 30.0% | |
| TGTAATTGCGTCATATAATG+AGG | - | chr3_3:14887010-14887029 | Msa0443590:intron | 30.0% | |
| TATTTGACATGACTGCTATT+TGG | - | chr3_3:14887076-14887095 | Msa0443590:intron | 30.0% | |
| GAATGAAAACTTAAGCAACT+TGG | - | chr3_3:14887133-14887152 | Msa0443590:intron | 30.0% | |
| ACATTGCTACTAATGAGAAA+GGG | + | chr3_3:14887213-14887232 | None:intergenic | 30.0% | |
| AACATTGCTACTAATGAGAA+AGG | + | chr3_3:14887214-14887233 | None:intergenic | 30.0% | |
| GTTCTTGATCTTGGATAAAT+AGG | - | chr3_3:14887245-14887264 | Msa0443590:intron | 30.0% | |
| CGACTAATTAGAATCATTCA+AGG | + | chr3_3:14887283-14887302 | None:intergenic | 30.0% | |
| GTTGCGAAAGAGTTAAATAA+TGG | - | chr3_3:14887447-14887466 | Msa0443590:intron | 30.0% | |
| ! | TAAGCTTTGATTATGTCTCT+TGG | - | chr3_3:14887690-14887709 | Msa0443590:intron | 30.0% |
| GTAGTCTTCTTTCAAATGTA+TGG | + | chr3_3:14887772-14887791 | None:intergenic | 30.0% | |
| ! | GCAACGTGCTTTTATAATTT+TGG | - | chr3_3:14888105-14888124 | Msa0443590:intron | 30.0% |
| AAACTAATTGGAACCAATGA+AGG | + | chr3_3:14888165-14888184 | None:intergenic | 30.0% | |
| ! | ATATTTTGTTCATGAGACCA+AGG | + | chr3_3:14888211-14888230 | None:intergenic | 30.0% |
| CCTTTGCTTCTAATGCAAAT+CGG | + | chr3_3:14882523-14882542 | None:intergenic | 35.0% | |
| TTGGTTGAGTAAGAAAAGAG+AGG | + | chr3_3:14882575-14882594 | None:intergenic | 35.0% | |
| ATTGAAATTGGGGCTGAAAA+GGG | + | chr3_3:14882605-14882624 | None:intergenic | 35.0% | |
| AATTGAAATTGGGGCTGAAA+AGG | + | chr3_3:14882606-14882625 | None:intergenic | 35.0% | |
| GAGGAAGAAACAAGAAGAAT+TGG | - | chr3_3:14882716-14882735 | Msa0443590:CDS | 35.0% | |
| GAAGAAACAAGAAGAATTGG+AGG | - | chr3_3:14882719-14882738 | Msa0443590:CDS | 35.0% | |
| ATGATTACTACTTCTGTTGC+AGG | - | chr3_3:14883051-14883070 | Msa0443590:intron | 35.0% | |
| ! | GGTTTGGTTCCATAATTCTT+TGG | - | chr3_3:14883081-14883100 | Msa0443590:intron | 35.0% |
| !! | TCAACTACAGCTTCAAGTTT+TGG | + | chr3_3:14883520-14883539 | None:intergenic | 35.0% |
| AAAATTATGCAGCTGCAAGT+GGG | - | chr3_3:14883606-14883625 | Msa0443590:intron | 35.0% | |
| ! | AGAATGGTGATGATAAGCAT+TGG | + | chr3_3:14883856-14883875 | None:intergenic | 35.0% |
| TCACCATTCTTCAAACTTGT+AGG | - | chr3_3:14883866-14883885 | Msa0443590:intron | 35.0% | |
| AAACTTGTAGGAATGATGAG+TGG | - | chr3_3:14883878-14883897 | Msa0443590:intron | 35.0% | |
| TGATGAGTGGATCATAAAGA+AGG | - | chr3_3:14883891-14883910 | Msa0443590:intron | 35.0% | |
| GAAAACTTGGAACAGATTAG+AGG | - | chr3_3:14884106-14884125 | Msa0443590:intron | 35.0% | |
| CAATATATGGAAAGAGCTTC+TGG | - | chr3_3:14884187-14884206 | Msa0443590:intron | 35.0% | |
| TGAAAAGAGAAGAGAATGGA+TGG | - | chr3_3:14884401-14884420 | Msa0443590:intron | 35.0% | |
| TTTCACACCATGTCTTACTT+TGG | + | chr3_3:14884436-14884455 | None:intergenic | 35.0% | |
| AAAAGGGTGAAGCATATCAA+AGG | - | chr3_3:14884521-14884540 | Msa0443590:CDS | 35.0% | |
| GAAAAATTTGCATCATGAGG+AGG | - | chr3_3:14884555-14884574 | Msa0443590:intron | 35.0% | |
| CGGTGGAAAAAATTGAGAAT+TGG | - | chr3_3:14884895-14884914 | Msa0443590:intron | 35.0% | |
| TATGGGTTTCATGTGTTTGT+TGG | - | chr3_3:14885062-14885081 | Msa0443590:intron | 35.0% | |
| GAAATTGGGTGTTCTTATTG+AGG | - | chr3_3:14885104-14885123 | Msa0443590:intron | 35.0% | |
| !!! | GATGTTATTTTTCATGGAGG+TGG | + | chr3_3:14885540-14885559 | None:intergenic | 35.0% |
| ACAAACCATGCCTATAAGAA+TGG | + | chr3_3:14885677-14885696 | None:intergenic | 35.0% | |
| ! | CTGGTTATTACTTCTTTTCC+TGG | - | chr3_3:14885708-14885727 | Msa0443590:intron | 35.0% |
| !! | CATATCAGTTGGTCTTAACA+TGG | - | chr3_3:14885988-14886007 | Msa0443590:intron | 35.0% |
| TCTTAACATGGCTTAAGCTT+TGG | - | chr3_3:14886000-14886019 | Msa0443590:intron | 35.0% | |
| AAGAATGATACAGAAAGCGA+CGG | + | chr3_3:14886078-14886097 | None:intergenic | 35.0% | |
| CTATTAAGCAGTCAAGACAA+TGG | - | chr3_3:14886192-14886211 | Msa0443590:intron | 35.0% | |
| !!! | GTCTGTTTTAGCTTTTACCA+GGG | - | chr3_3:14886359-14886378 | Msa0443590:intron | 35.0% |
| !!! | TTTAGCTTTTACCAGGGTAT+AGG | - | chr3_3:14886365-14886384 | Msa0443590:intron | 35.0% |
| GCCATAGCAAGAAAAAGAAA+TGG | + | chr3_3:14886424-14886443 | None:intergenic | 35.0% | |
| TACTGCGTTTATAATGCATG+TGG | - | chr3_3:14886609-14886628 | Msa0443590:intron | 35.0% | |
| ! | AAATATGTGCCACTGATAGA+GGG | + | chr3_3:14886765-14886784 | None:intergenic | 35.0% |
| AGTTCTGTTATGGTAAATGG+CGG | - | chr3_3:14886945-14886964 | Msa0443590:intron | 35.0% | |
| GCATATTGAGTTCTTGATCT+TGG | - | chr3_3:14887236-14887255 | Msa0443590:intron | 35.0% | |
| AGGTAAGCTGAATCATGTTT+AGG | - | chr3_3:14887375-14887394 | Msa0443590:intron | 35.0% | |
| GGTAAGCTGAATCATGTTTA+GGG | - | chr3_3:14887376-14887395 | Msa0443590:intron | 35.0% | |
| TATTTAACTCTTTCGCAACG+TGG | + | chr3_3:14887446-14887465 | None:intergenic | 35.0% | |
| !! | GTATTTGTTTTTCCTTGTGC+AGG | - | chr3_3:14887737-14887756 | Msa0443590:intron | 35.0% |
| TTTGAAAGAAGACTACGTCT+TGG | - | chr3_3:14887776-14887795 | Msa0443590:intron | 35.0% | |
| !! | TGCATTATTGGTTCCTTCAT+TGG | - | chr3_3:14888149-14888168 | Msa0443590:intron | 35.0% |
| TAATGCAAATCGGTGCAGAT+CGG | + | chr3_3:14882513-14882532 | None:intergenic | 40.0% | |
| ! | CCGATTTGCATTAGAAGCAA+AGG | - | chr3_3:14882520-14882539 | Msa0443590:three_prime_UTR | 40.0% |
| ! | TTAATTGAAAGTATGGGGGC+TGG | - | chr3_3:14882682-14882701 | Msa0443590:CDS | 40.0% |
| ! | TAATTGAAAGTATGGGGGCT+GGG | - | chr3_3:14882683-14882702 | Msa0443590:CDS | 40.0% |
| ACTTCTGTTGCAGGAAACAT+TGG | - | chr3_3:14883060-14883079 | Msa0443590:intron | 40.0% | |
| ! | TGTTGCAGGAAACATTGGTT+TGG | - | chr3_3:14883065-14883084 | Msa0443590:intron | 40.0% |
| GAAAATTATGCAGCTGCAAG+TGG | - | chr3_3:14883605-14883624 | Msa0443590:intron | 40.0% | |
| ! | TGAGAATTGGTTTAGTGGGT+CGG | - | chr3_3:14884908-14884927 | Msa0443590:intron | 40.0% |
| !! | GGTCGGTGAAAGTTTGTTTT+TGG | - | chr3_3:14884925-14884944 | Msa0443590:intron | 40.0% |
| GTACTTTCAGGCATATCAGT+TGG | - | chr3_3:14885977-14885996 | Msa0443590:intron | 40.0% | |
| !! | GTTTTGACCGAAACCTACAA+TGG | + | chr3_3:14886152-14886171 | None:intergenic | 40.0% |
| AGCAAGTTCTTCAAGCCTTT+GGG | + | chr3_3:14886174-14886193 | None:intergenic | 40.0% | |
| TAGCAAGTTCTTCAAGCCTT+TGG | + | chr3_3:14886175-14886194 | None:intergenic | 40.0% | |
| !! | ACCAAAGCCTTAGGTATTGA+CGG | + | chr3_3:14886230-14886249 | None:intergenic | 40.0% |
| AGTTTACTCACCAAAGCCTT+AGG | + | chr3_3:14886239-14886258 | None:intergenic | 40.0% | |
| !!! | GGTCTGTTTTAGCTTTTACC+AGG | - | chr3_3:14886358-14886377 | Msa0443590:intron | 40.0% |
| TGCTATGGCGCGTTATTTAA+TGG | - | chr3_3:14886435-14886454 | Msa0443590:intron | 40.0% | |
| ! | CAAATATGTGCCACTGATAG+AGG | + | chr3_3:14886766-14886785 | None:intergenic | 40.0% |
| CTCTATCAGTGGCACATATT+TGG | - | chr3_3:14886764-14886783 | Msa0443590:intron | 40.0% | |
| AAATGATGCCGCTGAGATTA+AGG | - | chr3_3:14887355-14887374 | Msa0443590:intron | 40.0% | |
| TCAGCTTACCTTAATCTCAG+CGG | + | chr3_3:14887366-14887385 | None:intergenic | 40.0% | |
| TGAATTATGATCACAGCCAC+AGG | - | chr3_3:14887413-14887432 | Msa0443590:intron | 40.0% | |
| ! | TGTTTTTCCTTGTGCAGGAA+CGG | - | chr3_3:14887742-14887761 | Msa0443590:intron | 40.0% |
| TGCAGTCAATTCTCTGTACA+AGG | - | chr3_3:14887949-14887968 | Msa0443590:intron | 40.0% | |
| AGAAAGAGCAACCATTGAAG+AGG | - | chr3_3:14888025-14888044 | Msa0443590:five_prime_UTR | 40.0% | |
| AGAAGAGCTGAAAGAGAGAG+AGG | - | chr3_3:14882420-14882439 | Msa0443590:three_prime_UTR | 45.0% | |
| GAAGAGCTGAAAGAGAGAGA+GGG | - | chr3_3:14882421-14882440 | Msa0443590:three_prime_UTR | 45.0% | |
| ATTGGGGCTGAAAAGGGTTA+GGG | + | chr3_3:14882599-14882618 | None:intergenic | 45.0% | |
| AATTGGGGCTGAAAAGGGTT+AGG | + | chr3_3:14882600-14882619 | None:intergenic | 45.0% | |
| GCAAATAGCAGATGTGTTGC+AGG | - | chr3_3:14883273-14883292 | Msa0443590:intron | 45.0% | |
| ATAGCAGATGTGTTGCAGGA+AGG | - | chr3_3:14883277-14883296 | Msa0443590:intron | 45.0% | |
| TCTGCAGTCGAAATTGTGAC+TGG | - | chr3_3:14883679-14883698 | Msa0443590:intron | 45.0% | |
| TGTGCCACCAAAGTAAGACA+TGG | - | chr3_3:14884426-14884445 | Msa0443590:intron | 45.0% | |
| CACACCATGTCTTACTTTGG+TGG | + | chr3_3:14884433-14884452 | None:intergenic | 45.0% | |
| GTCTGCCATTCTTATAGGCA+TGG | - | chr3_3:14885669-14885688 | Msa0443590:intron | 45.0% | |
| GGAATTGACTGAGATCGAGA+TGG | + | chr3_3:14886034-14886053 | None:intergenic | 45.0% | |
| TCGATCTCAGTCAATTCCTC+AGG | - | chr3_3:14886036-14886055 | Msa0443590:intron | 45.0% | |
| AGGTTTCGGTCAAAACCCAA+AGG | - | chr3_3:14886156-14886175 | Msa0443590:intron | 45.0% | |
| !! | TTAGGTATTGACGGTGTCAC+TGG | + | chr3_3:14886221-14886240 | None:intergenic | 45.0% |
| AGTGACACCGTCAATACCTA+AGG | - | chr3_3:14886220-14886239 | Msa0443590:intron | 45.0% | |
| ACCGTCAATACCTAAGGCTT+TGG | - | chr3_3:14886226-14886245 | Msa0443590:intron | 45.0% | |
| ! | AATTAGCCGACTCCACTTAG+TGG | - | chr3_3:14886297-14886316 | Msa0443590:intron | 45.0% |
| ! | ATTAGCCGACTCCACTTAGT+GGG | - | chr3_3:14886298-14886317 | Msa0443590:intron | 45.0% |
| CTTATCCCACTAAGTGGAGT+CGG | + | chr3_3:14886306-14886325 | None:intergenic | 45.0% | |
| ! | CCAAGTCTTATCCCACTAAG+TGG | + | chr3_3:14886312-14886331 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAGACT+TGG | - | chr3_3:14886309-14886328 | Msa0443590:intron | 45.0% | |
| CTTCAGGAAATCCTATACCC+TGG | + | chr3_3:14886379-14886398 | None:intergenic | 45.0% | |
| GGGTATAGGATTTCCTGAAG+TGG | - | chr3_3:14886379-14886398 | Msa0443590:intron | 45.0% | |
| !! | TCCTGAAGTGGTTTTGCACT+TGG | - | chr3_3:14886391-14886410 | Msa0443590:intron | 45.0% |
| !! | CCTGAAGTGGTTTTGCACTT+GGG | - | chr3_3:14886392-14886411 | Msa0443590:intron | 45.0% |
| AATCGATGCTTTACTGAGGG+TGG | - | chr3_3:14886507-14886526 | Msa0443590:intron | 45.0% | |
| ATCGATGCTTTACTGAGGGT+GGG | - | chr3_3:14886508-14886527 | Msa0443590:intron | 45.0% | |
| ! | TTTACTGAGGGTGGGTTTCT+AGG | - | chr3_3:14886516-14886535 | Msa0443590:intron | 45.0% |
| ! | TTACTGAGGGTGGGTTTCTA+GGG | - | chr3_3:14886517-14886536 | Msa0443590:intron | 45.0% |
| GAAAGCAACGCCTAGATTTC+AGG | + | chr3_3:14886878-14886897 | None:intergenic | 45.0% | |
| ! | GTTTTTCCTTGTGCAGGAAC+GGG | - | chr3_3:14887743-14887762 | Msa0443590:intron | 45.0% |
| ! | TTTTTCCTTGTGCAGGAACG+GGG | - | chr3_3:14887744-14887763 | Msa0443590:intron | 45.0% |
| GAAAGAAGACTACGTCTTGG+TGG | - | chr3_3:14887779-14887798 | Msa0443590:intron | 45.0% | |
| ! | GCGATGTTTTCCTTCACCAA+TGG | + | chr3_3:14887806-14887825 | None:intergenic | 45.0% |
| GAAGGAAAACATCGCAACCA+TGG | - | chr3_3:14887811-14887830 | Msa0443590:intron | 45.0% | |
| CTCTAACCTCTCAAGAACCA+TGG | + | chr3_3:14887831-14887850 | None:intergenic | 45.0% | |
| TTTCGGCAAGATGGGTGTTT+CGG | - | chr3_3:14888083-14888102 | Msa0443590:intron | 45.0% | |
| GGCTGAAAAGGGTTAGGGTT+TGG | + | chr3_3:14882594-14882613 | None:intergenic | 50.0% | |
| GCAGGAAGGAGAAGCTATTG+AGG | - | chr3_3:14883291-14883310 | Msa0443590:intron | 50.0% | |
| GCGATTCGTCATAGTTCCGA+TGG | - | chr3_3:14883817-14883836 | Msa0443590:intron | 50.0% | |
| ! | CCTGAAAGTACAGACCCAGA+GGG | + | chr3_3:14885968-14885987 | None:intergenic | 50.0% |
| ! | CATGGCTTAAGCTTTGGTGC+AGG | - | chr3_3:14886006-14886025 | Msa0443590:intron | 50.0% |
| ACAGCTAGCTCAACTACCTG+AGG | + | chr3_3:14886055-14886074 | None:intergenic | 50.0% | |
| CCCAAGTGCAAAACCACTTC+AGG | + | chr3_3:14886395-14886414 | None:intergenic | 50.0% | |
| GATAGAGGGTGGCTAAGAGA+GGG | + | chr3_3:14886751-14886770 | None:intergenic | 50.0% | |
| TGATAGAGGGTGGCTAAGAG+AGG | + | chr3_3:14886752-14886771 | None:intergenic | 50.0% | |
| TCTTAGCCACCCTCTATCAG+TGG | - | chr3_3:14886753-14886772 | Msa0443590:intron | 50.0% | |
| ! | TATGTGCCACTGATAGAGGG+TGG | + | chr3_3:14886762-14886781 | None:intergenic | 50.0% |
| AGTAGTCCCCAACGACACTA+TGG | - | chr3_3:14886900-14886919 | Msa0443590:intron | 50.0% | |
| ! | TTTTCCTTGTGCAGGAACGG+GGG | - | chr3_3:14887745-14887764 | Msa0443590:intron | 50.0% |
| ! | ACTACGTCTTGGTGGTCCAT+TGG | - | chr3_3:14887787-14887806 | Msa0443590:five_prime_UTR | 50.0% |
| ! | TCTTGGTGGTCCATTGGTGA+AGG | - | chr3_3:14887793-14887812 | Msa0443590:intron | 50.0% |
| TCGCAACCATGGTTCTTGAG+AGG | - | chr3_3:14887822-14887841 | Msa0443590:intron | 50.0% | |
| ACGCAGTCTGTTACACTGGT+TGG | - | chr3_3:14888049-14888068 | Msa0443590:intron | 50.0% | |
| ! | CTGTTACACTGGTTGGACTG+AGG | - | chr3_3:14888056-14888075 | Msa0443590:intron | 50.0% |
| CTGAAAGAGAGAGAGGGTCG+CGG | - | chr3_3:14882427-14882446 | Msa0443590:three_prime_UTR | 55.0% | |
| TGAAAGAGAGAGAGGGTCGC+GGG | - | chr3_3:14882428-14882447 | Msa0443590:three_prime_UTR | 55.0% | |
| !! | GTGCAGATCGGAGTGTTGGA+CGG | + | chr3_3:14882501-14882520 | None:intergenic | 55.0% |
| ATCGGTGCAGATCGGAGTGT+TGG | + | chr3_3:14882505-14882524 | None:intergenic | 55.0% | |
| ATGGGGGCTGGGTTTGCAAT+TGG | - | chr3_3:14882694-14882713 | Msa0443590:CDS | 55.0% | |
| CCCTCTGGGTCTGTACTTTC+AGG | - | chr3_3:14885965-14885984 | Msa0443590:intron | 55.0% | |
| ! | GCCTGAAAGTACAGACCCAG+AGG | + | chr3_3:14885969-14885988 | None:intergenic | 55.0% |
| AGTCCCCAACGACACTATGG+CGG | - | chr3_3:14886903-14886922 | Msa0443590:intron | 55.0% | |
| ! | AACCCGCCATAGTGTCGTTG+GGG | + | chr3_3:14886909-14886928 | None:intergenic | 55.0% |
| ! | CAACCCGCCATAGTGTCGTT+GGG | + | chr3_3:14886910-14886929 | None:intergenic | 55.0% |
| ACAACCCGCCATAGTGTCGT+TGG | + | chr3_3:14886911-14886930 | None:intergenic | 55.0% | |
| !! | AACGACACTATGGCGGGTTG+TGG | - | chr3_3:14886910-14886929 | Msa0443590:intron | 55.0% |
| ATGATCACAGCCACAGGTGC+TGG | - | chr3_3:14887419-14887438 | Msa0443590:intron | 55.0% | |
| ACAAGGACAGCATGTGCTGC+AGG | - | chr3_3:14887966-14887985 | Msa0443590:five_prime_UTR | 55.0% | |
| CAAGGACAGCATGTGCTGCA+GGG | - | chr3_3:14887967-14887986 | Msa0443590:five_prime_UTR | 55.0% | |
| CAGACTGCGTGCCTCTTCAA+TGG | + | chr3_3:14888039-14888058 | None:intergenic | 55.0% | |
| AGGCACGCAGTCTGTTACAC+TGG | - | chr3_3:14888045-14888064 | Msa0443590:five_prime_UTR | 55.0% | |
| ! | TACACTGGTTGGACTGAGGC+AGG | - | chr3_3:14888060-14888079 | Msa0443590:intron | 55.0% |
| GGTTGGACTGAGGCAGGTTT+CGG | - | chr3_3:14888066-14888085 | Msa0443590:intron | 55.0% | |
| TGAGGCAGGTTTCGGCAAGA+TGG | - | chr3_3:14888074-14888093 | Msa0443590:intron | 55.0% | |
| GAGGCAGGTTTCGGCAAGAT+GGG | - | chr3_3:14888075-14888094 | Msa0443590:intron | 55.0% | |
| AGAGGATCGCCGGGAGAGAA+TGG | - | chr3_3:14882456-14882475 | Msa0443590:three_prime_UTR | 60.0% | |
| GAGGATCGCCGGGAGAGAAT+GGG | - | chr3_3:14882457-14882476 | Msa0443590:three_prime_UTR | 60.0% | |
| GGGGCTGGGTTTGCAATTGG+AGG | - | chr3_3:14882697-14882716 | Msa0443590:CDS | 60.0% | |
| ! | CTGAGGGTGGGTTTCTAGGG+AGG | - | chr3_3:14886520-14886539 | Msa0443590:intron | 60.0% |
| GTCCCCAACGACACTATGGC+GGG | - | chr3_3:14886904-14886923 | Msa0443590:intron | 60.0% | |
| !! | GACACTATGGCGGGTTGTGG+TGG | - | chr3_3:14886913-14886932 | Msa0443590:intron | 60.0% |
| GTGTTGGACGGCGAGGTCGA+CGG | + | chr3_3:14882489-14882508 | None:intergenic | 65.0% | |
| !! | GATCGGAGTGTTGGACGGCG+AGG | + | chr3_3:14882496-14882515 | None:intergenic | 65.0% |
| GCAACGTGGACCAGCACCTG+TGG | + | chr3_3:14887432-14887451 | None:intergenic | 65.0% | |
| TGGTCCCCCGTTCCTGCACA+AGG | + | chr3_3:14887752-14887771 | None:intergenic | 65.0% | |
| GGACAGCATGTGCTGCAGGG+TGG | - | chr3_3:14887970-14887989 | Msa0443590:five_prime_UTR | 65.0% | |
| GAGAGAGAGGGTCGCGGGAG+AGG | - | chr3_3:14882433-14882452 | Msa0443590:three_prime_UTR | 70.0% | |
| AGAGGGTCGCGGGAGAGGAG+AGG | - | chr3_3:14882438-14882457 | Msa0443590:three_prime_UTR | 70.0% | |
| GCGGGAGAGGAGAGGATCGC+CGG | - | chr3_3:14882446-14882465 | Msa0443590:three_prime_UTR | 70.0% | |
| CGGGAGAGGAGAGGATCGCC+GGG | - | chr3_3:14882447-14882466 | Msa0443590:three_prime_UTR | 70.0% | |
| GGCGGCGACCCATTCTCTCC+CGG | + | chr3_3:14882468-14882487 | None:intergenic | 70.0% | |
| TTGGACGGCGAGGTCGACGG+CGG | + | chr3_3:14882486-14882505 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 14882407 | 14888296 | 14882407 | ID=Msa0443590;Name=Msa0443590 |
| chr3_3 | mRNA | 14882407 | 14888296 | 14882407 | ID=Msa0443590-mRNA-1;Parent=Msa0443590;Name=Msa0443590-mRNA-1;_AED=0.40;_eAED=0.40;_QI=272|0.57|0.62|1|0.57|0.62|8|220|116 |
| chr3_3 | exon | 14882407 | 14882749 | 14882407 | ID=Msa0443590-mRNA-1:exon:3248;Parent=Msa0443590-mRNA-1 |
| chr3_3 | exon | 14882903 | 14882944 | 14882903 | ID=Msa0443590-mRNA-1:exon:3247;Parent=Msa0443590-mRNA-1 |
| chr3_3 | exon | 14883327 | 14883386 | 14883327 | ID=Msa0443590-mRNA-1:exon:3246;Parent=Msa0443590-mRNA-1 |
| chr3_3 | exon | 14884456 | 14884545 | 14884456 | ID=Msa0443590-mRNA-1:exon:3245;Parent=Msa0443590-mRNA-1 |
| chr3_3 | exon | 14884646 | 14884675 | 14884646 | ID=Msa0443590-mRNA-1:exon:3244;Parent=Msa0443590-mRNA-1 |
| chr3_3 | exon | 14887781 | 14887810 | 14887781 | ID=Msa0443590-mRNA-1:exon:3243;Parent=Msa0443590-mRNA-1 |
| chr3_3 | exon | 14887963 | 14888066 | 14887963 | ID=Msa0443590-mRNA-1:exon:3242;Parent=Msa0443590-mRNA-1 |
| chr3_3 | exon | 14888153 | 14888296 | 14888153 | ID=Msa0443590-mRNA-1:exon:3241;Parent=Msa0443590-mRNA-1 |
| chr3_3 | five_prime_UTR | 14888153 | 14888296 | 14888153 | ID=Msa0443590-mRNA-1:five_prime_utr;Parent=Msa0443590-mRNA-1 |
| chr3_3 | five_prime_UTR | 14887963 | 14888066 | 14887963 | ID=Msa0443590-mRNA-1:five_prime_utr;Parent=Msa0443590-mRNA-1 |
| chr3_3 | five_prime_UTR | 14887787 | 14887810 | 14887787 | ID=Msa0443590-mRNA-1:five_prime_utr;Parent=Msa0443590-mRNA-1 |
| chr3_3 | CDS | 14887781 | 14887786 | 14887781 | ID=Msa0443590-mRNA-1:cds;Parent=Msa0443590-mRNA-1 |
| chr3_3 | CDS | 14884646 | 14884675 | 14884646 | ID=Msa0443590-mRNA-1:cds;Parent=Msa0443590-mRNA-1 |
| chr3_3 | CDS | 14884456 | 14884545 | 14884456 | ID=Msa0443590-mRNA-1:cds;Parent=Msa0443590-mRNA-1 |
| chr3_3 | CDS | 14883327 | 14883386 | 14883327 | ID=Msa0443590-mRNA-1:cds;Parent=Msa0443590-mRNA-1 |
| chr3_3 | CDS | 14882903 | 14882944 | 14882903 | ID=Msa0443590-mRNA-1:cds;Parent=Msa0443590-mRNA-1 |
| chr3_3 | CDS | 14882627 | 14882749 | 14882627 | ID=Msa0443590-mRNA-1:cds;Parent=Msa0443590-mRNA-1 |
| chr3_3 | three_prime_UTR | 14882407 | 14882626 | 14882407 | ID=Msa0443590-mRNA-1:three_prime_utr;Parent=Msa0443590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
