Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197490 | XP_003594201.1 | 100.000 | 255 | 0 | 0 | 1 | 255 | 1 | 255 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197490 | sp|Q94IB9|ACER_ARATH | 83.922 | 255 | 41 | 0 | 1 | 255 | 1 | 255 | 5.87e-164 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197490 | Q2HVG4 | 100.000 | 255 | 0 | 0 | 1 | 255 | 1 | 255 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0197490 | Msa0224110 | 0.801801 | 7.587250e-49 | -8.615850e-47 |
| Msa0197490 | Msa0239110 | 0.930125 | 2.579339e-93 | -8.615850e-47 |
| Msa0197490 | Msa0316870 | 0.995018 | 2.937836e-212 | -8.615850e-47 |
| Msa0197490 | Msa0570180 | 0.801484 | 8.810034e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197490 | MtrunA17_Chr2g0289711 | 100.000 | 255 | 0 | 0 | 1 | 255 | 1 | 255 | 0.0 | 532 |
| Msa0197490 | MtrunA17_Chr4g0075661 | 83.137 | 255 | 43 | 0 | 1 | 255 | 1 | 255 | 5.50e-164 | 454 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197490 | AT4G22330.1 | 83.922 | 255 | 41 | 0 | 1 | 255 | 1 | 255 | 5.97e-165 | 456 |
Find 84 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTAAACGACATTAATTT+TGG | 0.084584 | 2_1:+15495458 | None:intergenic |
| CTTCTACTATCTTCCCTTAT+TGG | 0.119063 | 2_1:+15491157 | None:intergenic |
| ATCCACAGGGTCATGCTTTA+TGG | 0.141060 | 2_1:-15491317 | Msa0197490:CDS |
| CCGAAATTCGTTCGTTTATT+CGG | 0.222369 | 2_1:-15491216 | Msa0197490:CDS |
| AGTTATCAATGTTTCGTTCT+TGG | 0.238962 | 2_1:-15491098 | Msa0197490:three_prime_UTR |
| ATGCCATATGGATGCTTTCT+TGG | 0.243312 | 2_1:-15490985 | Msa0197490:three_prime_UTR |
| CCGAATAAACGAACGAATTT+CGG | 0.256613 | 2_1:+15491216 | None:intergenic |
| TATGTTGTGTAGCCCTTTCT+AGG | 0.272782 | 2_1:-15490863 | Msa0197490:three_prime_UTR |
| ATGTAATACTTGTACATTCT+TGG | 0.273154 | 2_1:+15491462 | None:intergenic |
| ACCATTCTCCTGGCTTTCAT+TGG | 0.316082 | 2_1:-15493070 | Msa0197490:CDS |
| TTCTACTAGGAAGTTTGTTT+TGG | 0.323549 | 2_1:-15491386 | Msa0197490:CDS |
| CAGAAACGATATCTAGCTTC+TGG | 0.333834 | 2_1:-15493186 | Msa0197490:CDS |
| GCATCCATATGGCATAAATA+TGG | 0.345257 | 2_1:+15490993 | None:intergenic |
| CACTCAATAGTTGATGTAAC+TGG | 0.360779 | 2_1:+15493160 | None:intergenic |
| AAAGTAATGTTAACAGTCTA+AGG | 0.377967 | 2_1:+15490962 | None:intergenic |
| GCCGTGCTCAACAGCGTGGC+TGG | 0.384130 | 2_1:-15491242 | Msa0197490:CDS |
| TCAAATATGACGCTTGCCTT+TGG | 0.392633 | 2_1:-15492992 | Msa0197490:CDS |
| CAGGAAAGTGTTTGCAAAGT+AGG | 0.394936 | 2_1:+15491272 | None:intergenic |
| ATTTCAAAATGAAAGTTTCC+AGG | 0.400012 | 2_1:-15490782 | Msa0197490:three_prime_UTR |
| GCATGACCCTGTGGATTAAC+CGG | 0.418952 | 2_1:+15491324 | None:intergenic |
| TACTCAAAACTCACCTAGAA+AGG | 0.423500 | 2_1:+15490850 | None:intergenic |
| CAACATTCCGACCATTCTCC+TGG | 0.430879 | 2_1:-15493080 | Msa0197490:CDS |
| TGTACCATATTTATGCCATA+TGG | 0.442440 | 2_1:-15490997 | Msa0197490:three_prime_UTR |
| AACCAATACAGCAAAACCTT+TGG | 0.453134 | 2_1:+15490933 | None:intergenic |
| GTACTACGGTAGTGCCAATC+TGG | 0.453661 | 2_1:+15491597 | None:intergenic |
| TCATTTGTCCGTTTCGACAT+TGG | 0.453662 | 2_1:-15491525 | Msa0197490:CDS |
| CATCAAATTCCCAACTGGCC+TGG | 0.454091 | 2_1:+15490764 | None:intergenic |
| AACTTCAAAATTGCTTTCAC+CGG | 0.457416 | 2_1:-15490808 | Msa0197490:three_prime_UTR |
| CTGATTTAGATTGGTGTAAG+TGG | 0.458286 | 2_1:-15491058 | Msa0197490:three_prime_UTR |
| AGTAGATCGCATCCTGGGTT+GGG | 0.461992 | 2_1:+15495330 | None:intergenic |
| CTGTGGATTAACCGGCCATT+GGG | 0.462085 | 2_1:+15491332 | None:intergenic |
| GGTCAGATTAACAGAACAAA+AGG | 0.476863 | 2_1:+15495396 | None:intergenic |
| GTTGAGCACGGCAAAACATC+AGG | 0.477135 | 2_1:+15491253 | None:intergenic |
| ATCTAGTTAAGCAAATCATC+TGG | 0.486207 | 2_1:-15493225 | Msa0197490:five_prime_UTR |
| TGTCGAAACGGACAAATGAA+TGG | 0.488334 | 2_1:+15491529 | None:intergenic |
| CCAATGGCCGGTTAATCCAC+AGG | 0.505612 | 2_1:-15491331 | Msa0197490:CDS |
| CATAACATCAAATTCCCAAC+TGG | 0.507693 | 2_1:+15490759 | None:intergenic |
| GGAGACAGAGAATGACATAA+TGG | 0.509746 | 2_1:+15491493 | None:intergenic |
| TGAAAGTTTCCAGGCCAGTT+GGG | 0.511129 | 2_1:-15490773 | Msa0197490:three_prime_UTR |
| CCTGTGGATTAACCGGCCAT+TGG | 0.512230 | 2_1:+15491331 | None:intergenic |
| AAGTAGATCGCATCCTGGGT+TGG | 0.520586 | 2_1:+15495329 | None:intergenic |
| ATGAAAGTTTCCAGGCCAGT+TGG | 0.521820 | 2_1:-15490774 | Msa0197490:three_prime_UTR |
| AGGCCAAGAAAGCATCCATA+TGG | 0.522886 | 2_1:+15490982 | None:intergenic |
| CGCAGGAGCGAACCCAACCC+AGG | 0.528920 | 2_1:-15495342 | Msa0197490:five_prime_UTR |
| AGTATGTTATTATTAACTTG+TGG | 0.529421 | 2_1:-15490831 | Msa0197490:three_prime_UTR |
| ACTCAAAACTCACCTAGAAA+GGG | 0.533736 | 2_1:+15490851 | None:intergenic |
| CAGGAGAATGGTCGGAATGT+TGG | 0.537529 | 2_1:+15493081 | None:intergenic |
| CAATACTTACACATGTTGTA+AGG | 0.538998 | 2_1:+15492949 | None:intergenic |
| TTATAAGACCAATGAAAGCC+AGG | 0.540378 | 2_1:+15493062 | None:intergenic |
| AAGATAGTAGAAGATGATGA+AGG | 0.542905 | 2_1:-15491147 | Msa0197490:three_prime_UTR |
| CTTTGAAGCCAATGTCGAAA+CGG | 0.545401 | 2_1:+15491517 | None:intergenic |
| ACCAATGAAAGCCAGGAGAA+TGG | 0.545610 | 2_1:+15493069 | None:intergenic |
| AGAAACGATATCTAGCTTCT+GGG | 0.546726 | 2_1:-15493185 | Msa0197490:CDS |
| ACCAGCCACGCTGTTGAGCA+CGG | 0.551632 | 2_1:+15491241 | None:intergenic |
| AGCAAATCATCTGGCTGTAG+AGG | 0.552533 | 2_1:-15493216 | Msa0197490:five_prime_UTR |
| AACAGAACAAAAGGATGGGT+CGG | 0.561669 | 2_1:+15495405 | None:intergenic |
| CCGCAGATGTGTGCGCCAAG+TGG | 0.568975 | 2_1:-15491434 | Msa0197490:CDS |
| GTATAGCTTTGCTATCCACT+TGG | 0.575023 | 2_1:+15491419 | None:intergenic |
| AGATTAACAGAACAAAAGGA+TGG | 0.575396 | 2_1:+15495400 | None:intergenic |
| GAAACAAGTAGATCGCATCC+TGG | 0.579481 | 2_1:+15495324 | None:intergenic |
| ACATTCTCTACTCTCCAGAT+TGG | 0.579595 | 2_1:-15491611 | Msa0197490:CDS |
| CAAGGAGATATCCCAATGGC+CGG | 0.579972 | 2_1:-15491343 | Msa0197490:CDS |
| ACTTCAAAATTGCTTTCACC+GGG | 0.584000 | 2_1:-15490807 | Msa0197490:three_prime_UTR |
| GCAGAGTGATGAAACACCTA+TGG | 0.586255 | 2_1:-15491658 | Msa0197490:CDS |
| AAACAAGTAGATCGCATCCT+GGG | 0.599633 | 2_1:+15495325 | None:intergenic |
| ACACATGTTGTAAGGTAGCA+TGG | 0.603729 | 2_1:+15492957 | None:intergenic |
| AAGATCACTCACGCCGTACG+AGG | 0.604425 | 2_1:-15495440 | Msa0197490:five_prime_UTR |
| GGAAGATGGGCATTGTACTA+CGG | 0.605779 | 2_1:+15491583 | None:intergenic |
| ATGGTATAGCATGCTTCCAA+AGG | 0.607163 | 2_1:+15492976 | None:intergenic |
| TGTACATTCTTGGAATGCAG+AGG | 0.615036 | 2_1:+15491472 | None:intergenic |
| ATGAAAGCCAGGAGAATGGT+CGG | 0.616633 | 2_1:+15493073 | None:intergenic |
| CAAACTTCCTAGTAGAAGAG+TGG | 0.618523 | 2_1:+15491392 | None:intergenic |
| TACGTAGCCACTCTTCTACT+AGG | 0.620775 | 2_1:-15491399 | Msa0197490:CDS |
| CATCTGGCTGTAGAGGAGAA+TGG | 0.624178 | 2_1:-15493209 | Msa0197490:exon |
| GATTAACAGAACAAAAGGAT+GGG | 0.626782 | 2_1:+15495401 | None:intergenic |
| AGCAGAATCTCCCACACCAT+AGG | 0.634318 | 2_1:+15491642 | None:intergenic |
| CCACTTGGCGCACACATCTG+CGG | 0.634725 | 2_1:+15491434 | None:intergenic |
| CAATGGCCGGTTAATCCACA+GGG | 0.640873 | 2_1:-15491330 | Msa0197490:CDS |
| GAAACGATATCTAGCTTCTG+GGG | 0.664142 | 2_1:-15493184 | Msa0197490:CDS |
| TGCCATAAAGCATGACCCTG+TGG | 0.673570 | 2_1:+15491315 | None:intergenic |
| GTGATGAAACACCTATGGTG+TGG | 0.683307 | 2_1:-15491653 | Msa0197490:CDS |
| TGATGAAACACCTATGGTGT+GGG | 0.688402 | 2_1:-15491652 | Msa0197490:CDS |
| ACGGACAAATGAATGGACAA+CGG | 0.707160 | 2_1:+15491536 | None:intergenic |
| TCTGCAAGGAGATATCCCAA+TGG | 0.725537 | 2_1:-15491347 | Msa0197490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTTGAAAAAATTAATATT+CGG | + | chr2_1:15490867-15490886 | None:intergenic | 10.0% |
| !! | CAATAAAATACTATAATATT+GGG | + | chr2_1:15492121-15492140 | None:intergenic | 10.0% |
| !! | ATTATATATAAAATAAAGCA+TGG | + | chr2_1:15492758-15492777 | None:intergenic | 10.0% |
| !!! | TATAAATTTTTATTGATGTA+TGG | + | chr2_1:15493673-15493692 | None:intergenic | 10.0% |
| !!! | GTTTTTTTTTTTTGCTTATA+TGG | - | chr2_1:15491056-15491075 | Msa0197490:three_prime_UTR | 15.0% |
| !! | AAACAAAAAACATTGTAATT+TGG | + | chr2_1:15491319-15491338 | None:intergenic | 15.0% |
| !! | ACACATACATAAAAAAATAA+TGG | + | chr2_1:15491388-15491407 | None:intergenic | 15.0% |
| !!! | TTTTTTATGTATGTGTAATA+AGG | - | chr2_1:15491392-15491411 | Msa0197490:CDS | 15.0% |
| !! | CCAATAAAATACTATAATAT+TGG | + | chr2_1:15492122-15492141 | None:intergenic | 15.0% |
| !!! | CCAATATTATAGTATTTTAT+TGG | - | chr2_1:15492119-15492138 | Msa0197490:intron | 15.0% |
| !!! | TTGTTATTTTATAGAAAACA+AGG | - | chr2_1:15492277-15492296 | Msa0197490:intron | 15.0% |
| !!! | TTTTGTAACGAAAATATTAA+GGG | - | chr2_1:15493432-15493451 | Msa0197490:intron | 15.0% |
| !!! | AAGACAAAATTTTCTTTTAT+GGG | + | chr2_1:15493496-15493515 | None:intergenic | 15.0% |
| !! | AAAAAAATCAAGTTTATAAC+AGG | - | chr2_1:15494255-15494274 | Msa0197490:intron | 15.0% |
| !!! | TTTTCTTTAATGATACATTT+TGG | - | chr2_1:15495115-15495134 | Msa0197490:intron | 15.0% |
| !!! | ACATTAATTTTGGGTTAATT+AGG | + | chr2_1:15490774-15490793 | None:intergenic | 20.0% |
| !!! | TCTTAAACGACATTAATTTT+GGG | + | chr2_1:15490783-15490802 | None:intergenic | 20.0% |
| !!! | ATCTTAAACGACATTAATTT+TGG | + | chr2_1:15490784-15490803 | None:intergenic | 20.0% |
| !!! | CTTTTAAAATTTTAAGCTGT+GGG | - | chr2_1:15491236-15491255 | Msa0197490:CDS | 20.0% |
| !!! | TTACAATGTTTTTTGTTTTG+TGG | - | chr2_1:15491321-15491340 | Msa0197490:CDS | 20.0% |
| !!! | TCATTTTGAATTTCATAAGT+AGG | - | chr2_1:15491459-15491478 | Msa0197490:CDS | 20.0% |
| !! | AATCAAGTGTAAATCTTTAT+AGG | - | chr2_1:15491563-15491582 | Msa0197490:CDS | 20.0% |
| !! | CTTCAATATTTCCAAAATAT+CGG | - | chr2_1:15491978-15491997 | Msa0197490:intron | 20.0% |
| !! | AATATACAAGCTAAAAATTG+CGG | + | chr2_1:15492053-15492072 | None:intergenic | 20.0% |
| !!! | TTATTTTATAGAAAACAAGG+AGG | - | chr2_1:15492280-15492299 | Msa0197490:intron | 20.0% |
| !!! | TATTTTATAGAAAACAAGGA+GGG | - | chr2_1:15492281-15492300 | Msa0197490:intron | 20.0% |
| !! | TATTATATTATGGGAAATAC+TGG | + | chr2_1:15492373-15492392 | None:intergenic | 20.0% |
| !!! | GGTTTTTGGTATTATATTAT+GGG | + | chr2_1:15492382-15492401 | None:intergenic | 20.0% |
| !!! | AGGTTTTTGGTATTATATTA+TGG | + | chr2_1:15492383-15492402 | None:intergenic | 20.0% |
| !!! | TTATCACACTATTTAGATTT+TGG | - | chr2_1:15492580-15492599 | Msa0197490:intron | 20.0% |
| !!! | TATCACACTATTTAGATTTT+GGG | - | chr2_1:15492581-15492600 | Msa0197490:intron | 20.0% |
| !!! | TTATAAATGCTTTTAGACAA+CGG | - | chr2_1:15493194-15493213 | Msa0197490:exon | 20.0% |
| !!! | AATATTTTCGTTACAAAACA+AGG | + | chr2_1:15493430-15493449 | None:intergenic | 20.0% |
| !!! | GTTTTGTAACGAAAATATTA+AGG | - | chr2_1:15493431-15493450 | Msa0197490:intron | 20.0% |
| !!! | CAAGACAAAATTTTCTTTTA+TGG | + | chr2_1:15493497-15493516 | None:intergenic | 20.0% |
| !!! | CATAAAAGAAAATTTTGTCT+TGG | - | chr2_1:15493495-15493514 | Msa0197490:intron | 20.0% |
| !! | AATAAGCCAGAAATATTAAT+TGG | - | chr2_1:15493627-15493646 | Msa0197490:intron | 20.0% |
| !! | ATAAGCCAGAAATATTAATT+GGG | - | chr2_1:15493628-15493647 | Msa0197490:intron | 20.0% |
| !! | ATGGAAATAAAGAAATACAA+GGG | + | chr2_1:15493827-15493846 | None:intergenic | 20.0% |
| !! | TATGGAAATAAAGAAATACA+AGG | + | chr2_1:15493828-15493847 | None:intergenic | 20.0% |
| !! | AAATAAGTTTGTCTAACATA+TGG | + | chr2_1:15493846-15493865 | None:intergenic | 20.0% |
| !!! | TTTATAACAGGTTCTAATTT+AGG | - | chr2_1:15494267-15494286 | Msa0197490:intron | 20.0% |
| !!! | CAATCAATATCTATTGTTTT+TGG | - | chr2_1:15494514-15494533 | Msa0197490:intron | 20.0% |
| !!! | TTTGTTTTTCTGATTTAGAT+TGG | - | chr2_1:15495172-15495191 | Msa0197490:intron | 20.0% |
| !!! | ATATATTTTGTTGCAGTTTT+AGG | - | chr2_1:15495216-15495235 | Msa0197490:intron | 20.0% |
| !!! | AGTATGTTATTATTAACTTG+TGG | - | chr2_1:15495408-15495427 | Msa0197490:five_prime_UTR | 20.0% |
| !!! | GGGTTAATTAGGTTTTTTTT+CGG | + | chr2_1:15490763-15490782 | None:intergenic | 25.0% |
| !! | CTTATATATTTTCACCATCT+GGG | - | chr2_1:15490995-15491014 | Msa0197490:three_prime_UTR | 25.0% |
| !!! | ACCCTTTTGTTTAATTTGAA+CGG | - | chr2_1:15491133-15491152 | Msa0197490:three_prime_UTR | 25.0% |
| ! | TCCGTTCAAATTAAACAAAA+GGG | + | chr2_1:15491137-15491156 | None:intergenic | 25.0% |
| ! | TTCCGTTCAAATTAAACAAA+AGG | + | chr2_1:15491138-15491157 | None:intergenic | 25.0% |
| !!! | GCTTTTAAAATTTTAAGCTG+TGG | - | chr2_1:15491235-15491254 | Msa0197490:CDS | 25.0% |
| ! | TATCTTCGTTATGATGAATT+TGG | - | chr2_1:15491272-15491291 | Msa0197490:CDS | 25.0% |
| !!! | TTTGTTTTGTGGTTGTTATT+TGG | - | chr2_1:15491332-15491351 | Msa0197490:CDS | 25.0% |
| ! | GACAATTATTTGAACATTGT+TGG | - | chr2_1:15491436-15491455 | Msa0197490:CDS | 25.0% |
| !! | AGTATTTTATTGGAAACTGA+TGG | - | chr2_1:15492129-15492148 | Msa0197490:intron | 25.0% |
| !! | GTATTTTATTGGAAACTGAT+GGG | - | chr2_1:15492130-15492149 | Msa0197490:intron | 25.0% |
| !!! | TCACTTTTAATTTCTGCTTA+TGG | - | chr2_1:15492611-15492630 | Msa0197490:intron | 25.0% |
| !! | TATTTATTTGAACCGTTTTG+TGG | - | chr2_1:15492778-15492797 | Msa0197490:intron | 25.0% |
| !! | TATGTATCATATCGGATTTT+TGG | - | chr2_1:15492808-15492827 | Msa0197490:intron | 25.0% |
| ! | TTCCTTAAACAATGTTCTTA+GGG | + | chr2_1:15493473-15493492 | None:intergenic | 25.0% |
| !! | AATTTTGTCTTGGAAATACA+AGG | - | chr2_1:15493505-15493524 | Msa0197490:intron | 25.0% |
| ! | ATTGTTTAAGGAATCAAAAG+AGG | + | chr2_1:15493578-15493597 | None:intergenic | 25.0% |
| ! | CAAAACCCAATTAATATTTC+TGG | + | chr2_1:15493636-15493655 | None:intergenic | 25.0% |
| !! | CAGAAATATTAATTGGGTTT+TGG | - | chr2_1:15493634-15493653 | Msa0197490:intron | 25.0% |
| ! | TGGAAATAAAGAAATACAAG+GGG | + | chr2_1:15493826-15493845 | None:intergenic | 25.0% |
| !! | GGTTGATTATTGAACTATTT+TGG | - | chr2_1:15493960-15493979 | Msa0197490:intron | 25.0% |
| !! | AGCTAACTTTTTACAATCAT+TGG | - | chr2_1:15493990-15494009 | Msa0197490:intron | 25.0% |
| !! | GCTAACTTTTTACAATCATT+GGG | - | chr2_1:15493991-15494010 | Msa0197490:intron | 25.0% |
| ! | AATATTGTATGAGAAATGCT+AGG | - | chr2_1:15494032-15494051 | Msa0197490:intron | 25.0% |
| ! | ATATTGTATGAGAAATGCTA+GGG | - | chr2_1:15494033-15494052 | Msa0197490:intron | 25.0% |
| ! | AACTAACTGAATACAATATG+AGG | + | chr2_1:15494213-15494232 | None:intergenic | 25.0% |
| ! | ATATCATTCTCATATCTCAT+TGG | + | chr2_1:15494336-15494355 | None:intergenic | 25.0% |
| ! | ATGTAATACTTGTACATTCT+TGG | + | chr2_1:15494780-15494799 | None:intergenic | 25.0% |
| ! | AAAGTAATGTTAACAGTCTA+AGG | + | chr2_1:15495280-15495299 | None:intergenic | 25.0% |
| !!! | ACTTTCATTTTGAAATTTCC+CGG | + | chr2_1:15495453-15495472 | None:intergenic | 25.0% |
| ! | ATTTCAAAATGAAAGTTTCC+AGG | - | chr2_1:15495457-15495476 | Msa0197490:five_prime_UTR | 25.0% |
| !!! | TAGGTTTTTTTTCGGTACAA+AGG | + | chr2_1:15490755-15490774 | None:intergenic | 30.0% |
| GATTAACAGAACAAAAGGAT+GGG | + | chr2_1:15490841-15490860 | None:intergenic | 30.0% | |
| AGATTAACAGAACAAAAGGA+TGG | + | chr2_1:15490842-15490861 | None:intergenic | 30.0% | |
| GTGAAAAAGATACATACTTG+AGG | + | chr2_1:15490952-15490971 | None:intergenic | 30.0% | |
| CCAGATGGTGAAAATATATA+AGG | + | chr2_1:15490997-15491016 | None:intergenic | 30.0% | |
| ! | CCTTATATATTTTCACCATC+TGG | - | chr2_1:15490994-15491013 | Msa0197490:three_prime_UTR | 30.0% |
| AAAAAAAACGCTTCATGCTT+GGG | + | chr2_1:15491045-15491064 | None:intergenic | 30.0% | |
| AAAAAAAAACGCTTCATGCT+TGG | + | chr2_1:15491046-15491065 | None:intergenic | 30.0% | |
| !! | TCTGCAAATTTTGGTAGAAT+TGG | - | chr2_1:15491179-15491198 | Msa0197490:CDS | 30.0% |
| !! | AATTGGAGTGCATTATTTTG+AGG | - | chr2_1:15491196-15491215 | Msa0197490:CDS | 30.0% |
| !! | TATTTGGTAGTGACTTATTG+TGG | - | chr2_1:15491348-15491367 | Msa0197490:CDS | 30.0% |
| !! | TGGACGTTGTTATTCTTTTA+AGG | - | chr2_1:15491535-15491554 | Msa0197490:CDS | 30.0% |
| !!! | TGAACCCTTGTTTTAAATAG+AGG | - | chr2_1:15491618-15491637 | Msa0197490:CDS | 30.0% |
| !!! | ACAGTTTTAGATAGTGGTAA+GGG | + | chr2_1:15491772-15491791 | None:intergenic | 30.0% |
| !!! | ATGTTGTGTTGTTTTAGCAT+AGG | - | chr2_1:15491835-15491854 | Msa0197490:intron | 30.0% |
| AACACTGATGTTAATTCACA+AGG | + | chr2_1:15491872-15491891 | None:intergenic | 30.0% | |
| ! | CATCAGTGTTGTTAAATATC+CGG | - | chr2_1:15491882-15491901 | Msa0197490:intron | 30.0% |
| TTGAAGTTGCTAAATCGTAT+CGG | + | chr2_1:15491964-15491983 | None:intergenic | 30.0% | |
| CAAATATGGTATATCAGTCA+TGG | - | chr2_1:15492011-15492030 | Msa0197490:intron | 30.0% | |
| GATTCAATTGAAGAAGTTGA+CGG | - | chr2_1:15492459-15492478 | Msa0197490:intron | 30.0% | |
| AATGAGGACAATGATTATGT+TGG | - | chr2_1:15492501-15492520 | Msa0197490:intron | 30.0% | |
| ATGAGGACAATGATTATGTT+GGG | - | chr2_1:15492502-15492521 | Msa0197490:intron | 30.0% | |
| AGAGTTATTAAATCGTATCG+CGG | + | chr2_1:15492848-15492867 | None:intergenic | 30.0% | |
| TTATAGGGATGGAAACAATA+AGG | + | chr2_1:15492911-15492930 | None:intergenic | 30.0% | |
| ATCTAGTTAAGCAAATCATC+TGG | - | chr2_1:15493014-15493033 | Msa0197490:CDS | 30.0% | |
| CAATACTTACACATGTTGTA+AGG | + | chr2_1:15493293-15493312 | None:intergenic | 30.0% | |
| TTCCCTAAGAACATTGTTTA+AGG | - | chr2_1:15493468-15493487 | Msa0197490:intron | 30.0% | |
| GTTCCTTAAACAATGTTCTT+AGG | + | chr2_1:15493474-15493493 | None:intergenic | 30.0% | |
| AATGTTAACAAGTTCCCTTA+GGG | + | chr2_1:15493602-15493621 | None:intergenic | 30.0% | |
| AAATGTTAACAAGTTCCCTT+AGG | + | chr2_1:15493603-15493622 | None:intergenic | 30.0% | |
| !! | TTAGTTTAGTTGTTTTCCAC+CGG | - | chr2_1:15493699-15493718 | Msa0197490:intron | 30.0% |
| ! | ACATTTGTGCATTTGAGTTA+GGG | - | chr2_1:15493768-15493787 | Msa0197490:intron | 30.0% |
| !!! | AACTTATTTTTGCTACTGAG+AGG | - | chr2_1:15493857-15493876 | Msa0197490:intron | 30.0% |
| !!! | AGGAAGGTTTTATTTCGATT+GGG | - | chr2_1:15493877-15493896 | Msa0197490:intron | 30.0% |
| ! | GATTGTAAAAAGTTAGCTCT+TGG | + | chr2_1:15493988-15494007 | None:intergenic | 30.0% |
| ATATTGGGTGAAATCTATGT+GGG | + | chr2_1:15494160-15494179 | None:intergenic | 30.0% | |
| CTAATACTCACTCTCATATT+GGG | + | chr2_1:15494175-15494194 | None:intergenic | 30.0% | |
| TCTAATACTCACTCTCATAT+TGG | + | chr2_1:15494176-15494195 | None:intergenic | 30.0% | |
| ! | GATGTCCTTTTAATATAAGC+AGG | - | chr2_1:15494289-15494308 | Msa0197490:intron | 30.0% |
| AGACACCTGCTTATATTAAA+AGG | + | chr2_1:15494297-15494316 | None:intergenic | 30.0% | |
| ! | GAAGAAAAGTGTAACTGAAA+AGG | + | chr2_1:15494397-15494416 | None:intergenic | 30.0% |
| ! | CATTTGTTGCTCTTGAATTT+AGG | - | chr2_1:15494553-15494572 | Msa0197490:intron | 30.0% |
| CCATAGAAAAATAGGAAGAT+GGG | + | chr2_1:15494672-15494691 | None:intergenic | 30.0% | |
| ACCATAGAAAAATAGGAAGA+TGG | + | chr2_1:15494673-15494692 | None:intergenic | 30.0% | |
| !! | TTCTACTAGGAAGTTTGTTT+TGG | - | chr2_1:15494853-15494872 | Msa0197490:intron | 30.0% |
| AAAAGCCAAAAAGCCAATAA+GGG | - | chr2_1:15495069-15495088 | Msa0197490:intron | 30.0% | |
| AAGATAGTAGAAGATGATGA+AGG | - | chr2_1:15495092-15495111 | Msa0197490:intron | 30.0% | |
| AGTTATCAATGTTTCGTTCT+TGG | - | chr2_1:15495141-15495160 | Msa0197490:intron | 30.0% | |
| TGTACCATATTTATGCCATA+TGG | - | chr2_1:15495242-15495261 | Msa0197490:intron | 30.0% | |
| !! | ACATTACTTTTGACAACCAA+AGG | - | chr2_1:15495290-15495309 | Msa0197490:intron | 30.0% |
| TACAAGTAAAAATGAGCTAC+TGG | + | chr2_1:15495352-15495371 | None:intergenic | 30.0% | |
| AACTTCAAAATTGCTTTCAC+CGG | - | chr2_1:15495431-15495450 | Msa0197490:five_prime_UTR | 30.0% | |
| GGTCAGATTAACAGAACAAA+AGG | + | chr2_1:15490846-15490865 | None:intergenic | 35.0% | |
| TCAAACACAAAAACAAACGC+AGG | - | chr2_1:15490880-15490899 | Msa0197490:three_prime_UTR | 35.0% | |
| ! | TGGATCTTCTCTGCAAATTT+TGG | - | chr2_1:15491170-15491189 | Msa0197490:exon | 35.0% |
| ! | CGGACCTCTATTTAAAACAA+GGG | + | chr2_1:15491625-15491644 | None:intergenic | 35.0% |
| !!! | CACAGTTTTAGATAGTGGTA+AGG | + | chr2_1:15491773-15491792 | None:intergenic | 35.0% |
| !! | TGACAATTCATTCTAGTTCC+AGG | + | chr2_1:15491796-15491815 | None:intergenic | 35.0% |
| ! | TTTATTGGAAACTGATGGGT+CGG | - | chr2_1:15492134-15492153 | Msa0197490:intron | 35.0% |
| ! | CACATTTTTCGCTTTCGTTT+GGG | + | chr2_1:15492219-15492238 | None:intergenic | 35.0% |
| ! | ACACATTTTTCGCTTTCGTT+TGG | + | chr2_1:15492220-15492239 | None:intergenic | 35.0% |
| AGAATCAGAAGCAGAGTTTA+AGG | - | chr2_1:15492422-15492441 | Msa0197490:intron | 35.0% | |
| TGAGGACAATGATTATGTTG+GGG | - | chr2_1:15492503-15492522 | Msa0197490:intron | 35.0% | |
| TTCAAACAACTAGTAGAACC+TGG | + | chr2_1:15492666-15492685 | None:intergenic | 35.0% | |
| GCTTACGCTATGTATCATAT+CGG | - | chr2_1:15492800-15492819 | Msa0197490:intron | 35.0% | |
| ! | AGTCCTGCAACTTGTTTATA+GGG | + | chr2_1:15492926-15492945 | None:intergenic | 35.0% |
| ! | TTGCAGGACTGATTGTATTT+TGG | - | chr2_1:15492936-15492955 | Msa0197490:intron | 35.0% |
| ACAAATTCCTGCAAATCATG+TGG | + | chr2_1:15492969-15492988 | None:intergenic | 35.0% | |
| ! | AGAAACGATATCTAGCTTCT+GGG | - | chr2_1:15493054-15493073 | Msa0197490:CDS | 35.0% |
| ! | CACTCAATAGTTGATGTAAC+TGG | + | chr2_1:15493082-15493101 | None:intergenic | 35.0% |
| TTATAAGACCAATGAAAGCC+AGG | + | chr2_1:15493180-15493199 | None:intergenic | 35.0% | |
| ATTCCTTAAACAATGCCCTA+AGG | - | chr2_1:15493584-15493603 | Msa0197490:intron | 35.0% | |
| TTCCTTAAACAATGCCCTAA+GGG | - | chr2_1:15493585-15493604 | Msa0197490:intron | 35.0% | |
| ! | GACATTTGTGCATTTGAGTT+AGG | - | chr2_1:15493767-15493786 | Msa0197490:intron | 35.0% |
| ! | CATTTGTGCATTTGAGTTAG+GGG | - | chr2_1:15493769-15493788 | Msa0197490:intron | 35.0% |
| ! | ATTTGTGCATTTGAGTTAGG+GGG | - | chr2_1:15493770-15493789 | Msa0197490:intron | 35.0% |
| AGAAATACAAGGGGAGAAAA+GGG | + | chr2_1:15493817-15493836 | None:intergenic | 35.0% | |
| AAGAAATACAAGGGGAGAAA+AGG | + | chr2_1:15493818-15493837 | None:intergenic | 35.0% | |
| !! | TATTTTTGCTACTGAGAGGA+AGG | - | chr2_1:15493861-15493880 | Msa0197490:intron | 35.0% |
| !!! | GAGGAAGGTTTTATTTCGAT+TGG | - | chr2_1:15493876-15493895 | Msa0197490:intron | 35.0% |
| TAGCTGTTTGATTATGCTTG+AGG | - | chr2_1:15493938-15493957 | Msa0197490:intron | 35.0% | |
| AGCTGTTTGATTATGCTTGA+GGG | - | chr2_1:15493939-15493958 | Msa0197490:intron | 35.0% | |
| TCTAACACTCACTCTCTTAT+TGG | - | chr2_1:15494078-15494097 | Msa0197490:intron | 35.0% | |
| CTAACACTCACTCTCTTATT+GGG | - | chr2_1:15494079-15494098 | Msa0197490:intron | 35.0% | |
| TAAAATGGTGAAACCCACTT+GGG | + | chr2_1:15494110-15494129 | None:intergenic | 35.0% | |
| ATAAAATGGTGAAACCCACT+TGG | + | chr2_1:15494111-15494130 | None:intergenic | 35.0% | |
| ! | GAAATGGGTTCCACATAAAA+TGG | + | chr2_1:15494125-15494144 | None:intergenic | 35.0% |
| CATATTGGGTGAAATCTATG+TGG | + | chr2_1:15494161-15494180 | None:intergenic | 35.0% | |
| !! | AATACAATATGAGGAGTGCT+AGG | + | chr2_1:15494204-15494223 | None:intergenic | 35.0% |
| CTATCGTAATCATAATGCGT+AGG | - | chr2_1:15494451-15494470 | Msa0197490:intron | 35.0% | |
| !! | CCCATCTTCCTATTTTTCTA+TGG | - | chr2_1:15494669-15494688 | Msa0197490:intron | 35.0% |
| AAGCAGCACCATAGAAAAAT+AGG | + | chr2_1:15494680-15494699 | None:intergenic | 35.0% | |
| ! | TGCTTTATGGCATGTTTTCA+TGG | - | chr2_1:15494935-15494954 | Msa0197490:intron | 35.0% |
| ! | GCTTTATGGCATGTTTTCAT+GGG | - | chr2_1:15494936-15494955 | Msa0197490:intron | 35.0% |
| CCGAATAAACGAACGAATTT+CGG | + | chr2_1:15495026-15495045 | None:intergenic | 35.0% | |
| CCGAAATTCGTTCGTTTATT+CGG | - | chr2_1:15495023-15495042 | Msa0197490:intron | 35.0% | |
| ! | GGCTTTTCAATCTTCACATA+TGG | + | chr2_1:15495056-15495075 | None:intergenic | 35.0% |
| GAAAAGCCAAAAAGCCAATA+AGG | - | chr2_1:15495068-15495087 | Msa0197490:intron | 35.0% | |
| !!! | ATCTTCCCTTATTGGCTTTT+TGG | + | chr2_1:15495077-15495096 | None:intergenic | 35.0% |
| CTTCTACTATCTTCCCTTAT+TGG | + | chr2_1:15495085-15495104 | None:intergenic | 35.0% | |
| CTGATTTAGATTGGTGTAAG+TGG | - | chr2_1:15495181-15495200 | Msa0197490:intron | 35.0% | |
| GCATCCATATGGCATAAATA+TGG | + | chr2_1:15495249-15495268 | None:intergenic | 35.0% | |
| !! | AACCAAAGGTTTTGCTGTAT+TGG | - | chr2_1:15495304-15495323 | Msa0197490:intron | 35.0% |
| AACCAATACAGCAAAACCTT+TGG | + | chr2_1:15495309-15495328 | None:intergenic | 35.0% | |
| ACTCAAAACTCACCTAGAAA+GGG | + | chr2_1:15495391-15495410 | None:intergenic | 35.0% | |
| TACTCAAAACTCACCTAGAA+AGG | + | chr2_1:15495392-15495411 | None:intergenic | 35.0% | |
| ACTTCAAAATTGCTTTCACC+GGG | - | chr2_1:15495432-15495451 | Msa0197490:five_prime_UTR | 35.0% | |
| CATAACATCAAATTCCCAAC+TGG | + | chr2_1:15495483-15495502 | None:intergenic | 35.0% | |
| ! | GATGATCTCTTTTCCTCGTA+CGG | + | chr2_1:15490815-15490834 | None:intergenic | 40.0% |
| AACAGAACAAAAGGATGGGT+CGG | + | chr2_1:15490837-15490856 | None:intergenic | 40.0% | |
| AAACAAGTAGATCGCATCCT+GGG | + | chr2_1:15490917-15490936 | None:intergenic | 40.0% | |
| CATAAAAACAACGACCCAGA+TGG | + | chr2_1:15491012-15491031 | None:intergenic | 40.0% | |
| GAACGGAAAACGATTCAGAT+TGG | - | chr2_1:15491150-15491169 | Msa0197490:three_prime_UTR | 40.0% | |
| GTTTGTGTCTTGCGTTTGTA+TGG | - | chr2_1:15491515-15491534 | Msa0197490:CDS | 40.0% | |
| ! | GCGGACCTCTATTTAAAACA+AGG | + | chr2_1:15491626-15491645 | None:intergenic | 40.0% |
| CATTGCAGTTCTTGACATTG+CGG | + | chr2_1:15491740-15491759 | None:intergenic | 40.0% | |
| !! | GCAGTATAGCACTGATATAC+CGG | + | chr2_1:15491904-15491923 | None:intergenic | 40.0% |
| CTCTTCCGTATCGAAAGTTA+GGG | - | chr2_1:15491923-15491942 | Msa0197490:intron | 40.0% | |
| GTCTACCCTAACTTTCGATA+CGG | + | chr2_1:15491931-15491950 | None:intergenic | 40.0% | |
| ! | GTGCAATCTCTCCGATATTT+TGG | + | chr2_1:15491992-15492011 | None:intergenic | 40.0% |
| TCGGAGAGATTGCACAAATA+TGG | - | chr2_1:15491997-15492016 | Msa0197490:intron | 40.0% | |
| ATCAGTCATGGCATGCATAT+CGG | - | chr2_1:15492023-15492042 | Msa0197490:intron | 40.0% | |
| CGAAAGCGAAAAATGTGTAG+TGG | - | chr2_1:15492222-15492241 | Msa0197490:intron | 40.0% | |
| TAGAAAACAAGGAGGGATAG+TGG | - | chr2_1:15492288-15492307 | Msa0197490:intron | 40.0% | |
| TGCCTCACTATCTGAAAATG+AGG | - | chr2_1:15492485-15492504 | Msa0197490:intron | 40.0% | |
| ! | GTCCTCATTTTCAGATAGTG+AGG | + | chr2_1:15492490-15492509 | None:intergenic | 40.0% |
| CAATGATTATGTTGGGGAAG+AGG | - | chr2_1:15492509-15492528 | Msa0197490:intron | 40.0% | |
| ACATAGCGTAAGCCACAAAA+CGG | + | chr2_1:15492793-15492812 | None:intergenic | 40.0% | |
| ! | CTGCAACTTGTTTATAGGGA+TGG | + | chr2_1:15492922-15492941 | None:intergenic | 40.0% |
| CATCCCTATAAACAAGTTGC+AGG | - | chr2_1:15492920-15492939 | Msa0197490:intron | 40.0% | |
| ! | CAGTCCTGCAACTTGTTTAT+AGG | + | chr2_1:15492927-15492946 | None:intergenic | 40.0% |
| ! | CAGAAACGATATCTAGCTTC+TGG | - | chr2_1:15493053-15493072 | Msa0197490:CDS | 40.0% |
| ! | GAAACGATATCTAGCTTCTG+GGG | - | chr2_1:15493055-15493074 | Msa0197490:CDS | 40.0% |
| TCAAATATGACGCTTGCCTT+TGG | - | chr2_1:15493247-15493266 | Msa0197490:five_prime_UTR | 40.0% | |
| ATGGTATAGCATGCTTCCAA+AGG | + | chr2_1:15493266-15493285 | None:intergenic | 40.0% | |
| ACACATGTTGTAAGGTAGCA+TGG | + | chr2_1:15493285-15493304 | None:intergenic | 40.0% | |
| !! | TTCCCTTAGGGCATTGTTTA+AGG | + | chr2_1:15493590-15493609 | None:intergenic | 40.0% |
| TTATTGGGTGAAACCCAAGT+GGG | - | chr2_1:15494094-15494113 | Msa0197490:intron | 40.0% | |
| ! | GTGGGTTTCACCATTTTATG+TGG | - | chr2_1:15494112-15494131 | Msa0197490:intron | 40.0% |
| TTTCTTCTGCTGAAGCTCTT+AGG | - | chr2_1:15494410-15494429 | Msa0197490:intron | 40.0% | |
| TGATGAAACACCTATGGTGT+GGG | - | chr2_1:15494587-15494606 | Msa0197490:intron | 40.0% | |
| ACATTCTCTACTCTCCAGAT+TGG | - | chr2_1:15494628-15494647 | Msa0197490:intron | 40.0% | |
| ACGGACAAATGAATGGACAA+CGG | + | chr2_1:15494706-15494725 | None:intergenic | 40.0% | |
| TGTCGAAACGGACAAATGAA+TGG | + | chr2_1:15494713-15494732 | None:intergenic | 40.0% | |
| TCATTTGTCCGTTTCGACAT+TGG | - | chr2_1:15494714-15494733 | Msa0197490:intron | 40.0% | |
| !! | CTTTGAAGCCAATGTCGAAA+CGG | + | chr2_1:15494725-15494744 | None:intergenic | 40.0% |
| GGAGACAGAGAATGACATAA+TGG | + | chr2_1:15494749-15494768 | None:intergenic | 40.0% | |
| TGTACATTCTTGGAATGCAG+AGG | + | chr2_1:15494770-15494789 | None:intergenic | 40.0% | |
| ! | GTATAGCTTTGCTATCCACT+TGG | + | chr2_1:15494823-15494842 | None:intergenic | 40.0% |
| CAAACTTCCTAGTAGAAGAG+TGG | + | chr2_1:15494850-15494869 | None:intergenic | 40.0% | |
| ! | ATGTGATCGAGTTTTCTGCA+AGG | - | chr2_1:15494878-15494897 | Msa0197490:intron | 40.0% |
| !! | CAGGAAAGTGTTTGCAAAGT+AGG | + | chr2_1:15494970-15494989 | None:intergenic | 40.0% |
| ATGCCATATGGATGCTTTCT+TGG | - | chr2_1:15495254-15495273 | Msa0197490:intron | 40.0% | |
| TATGTTGTGTAGCCCTTTCT+AGG | - | chr2_1:15495376-15495395 | Msa0197490:five_prime_UTR | 40.0% | |
| GAAACAAGTAGATCGCATCC+TGG | + | chr2_1:15490918-15490937 | None:intergenic | 45.0% | |
| ! | CGATCTAGGATGTGACATGT+CGG | - | chr2_1:15491651-15491670 | Msa0197490:CDS | 45.0% |
| AGAGGACGCAATCACAATCA+TGG | + | chr2_1:15491699-15491718 | None:intergenic | 45.0% | |
| AAAACCACAGTCAGATGCAG+AGG | + | chr2_1:15491717-15491736 | None:intergenic | 45.0% | |
| ! | GATAGTGGTAAGGGTTGTTG+TGG | + | chr2_1:15491763-15491782 | None:intergenic | 45.0% |
| !!! | CCAGGCACAGTTTTAGATAG+TGG | + | chr2_1:15491778-15491797 | None:intergenic | 45.0% |
| ! | CCACTATCTAAAACTGTGCC+TGG | - | chr2_1:15491775-15491794 | Msa0197490:intron | 45.0% |
| GCTCTTCCGTATCGAAAGTT+AGG | - | chr2_1:15491922-15491941 | Msa0197490:intron | 45.0% | |
| ! | AACTGATGGGTCGGTCAAAT+AGG | - | chr2_1:15492143-15492162 | Msa0197490:intron | 45.0% |
| ! | GCAGGGTCATCATAGGTTTT+TGG | + | chr2_1:15492396-15492415 | None:intergenic | 45.0% |
| CTTCTGATTCTACCAAGGCA+GGG | + | chr2_1:15492413-15492432 | None:intergenic | 45.0% | |
| CTCTGCTTCTGATTCTACCA+AGG | + | chr2_1:15492418-15492437 | None:intergenic | 45.0% | |
| AGGGATGGAAACAATAAGGC+AGG | + | chr2_1:15492907-15492926 | None:intergenic | 45.0% | |
| AGCAAATCATCTGGCTGTAG+AGG | - | chr2_1:15493023-15493042 | Msa0197490:CDS | 45.0% | |
| ATGAAAGCCAGGAGAATGGT+CGG | + | chr2_1:15493169-15493188 | None:intergenic | 45.0% | |
| ! | ACCATTCTCCTGGCTTTCAT+TGG | - | chr2_1:15493169-15493188 | Msa0197490:CDS | 45.0% |
| ACCAATGAAAGCCAGGAGAA+TGG | + | chr2_1:15493173-15493192 | None:intergenic | 45.0% | |
| CATTAGTGAGACAGCTATGC+CGG | + | chr2_1:15493721-15493740 | None:intergenic | 45.0% | |
| CTTATTGGGTGAAACCCAAG+TGG | - | chr2_1:15494093-15494112 | Msa0197490:intron | 45.0% | |
| TGGAACCCATTTCCAAAGAG+TGG | - | chr2_1:15494132-15494151 | Msa0197490:intron | 45.0% | |
| ! | GGGTACCACTCTTTGGAAAT+GGG | + | chr2_1:15494140-15494159 | None:intergenic | 45.0% |
| ! | TGGGTACCACTCTTTGGAAA+TGG | + | chr2_1:15494141-15494160 | None:intergenic | 45.0% |
| TCTATGTGGGTACCACTCTT+TGG | + | chr2_1:15494147-15494166 | None:intergenic | 45.0% | |
| GCTGAAGCTCTTAGGCAATT+AGG | - | chr2_1:15494418-15494437 | Msa0197490:intron | 45.0% | |
| GCAGAGTGATGAAACACCTA+TGG | - | chr2_1:15494581-15494600 | Msa0197490:intron | 45.0% | |
| GTGATGAAACACCTATGGTG+TGG | - | chr2_1:15494586-15494605 | Msa0197490:intron | 45.0% | |
| ! | GGAAGATGGGCATTGTACTA+CGG | + | chr2_1:15494659-15494678 | None:intergenic | 45.0% |
| TACGTAGCCACTCTTCTACT+AGG | - | chr2_1:15494840-15494859 | Msa0197490:intron | 45.0% | |
| TCTGCAAGGAGATATCCCAA+TGG | - | chr2_1:15494892-15494911 | Msa0197490:intron | 45.0% | |
| ATCCACAGGGTCATGCTTTA+TGG | - | chr2_1:15494922-15494941 | Msa0197490:intron | 45.0% | |
| !! | AGGCCAAGAAAGCATCCATA+TGG | + | chr2_1:15495260-15495279 | None:intergenic | 45.0% |
| ATGAAAGTTTCCAGGCCAGT+TGG | - | chr2_1:15495465-15495484 | Msa0197490:five_prime_UTR | 45.0% | |
| TGAAAGTTTCCAGGCCAGTT+GGG | - | chr2_1:15495466-15495485 | Msa0197490:five_prime_UTR | 45.0% | |
| !! | TTCTATTATATTATTATATT+GGG | + | chr2_1:15492173-15492192 | None:intergenic | 5.0% |
| !! | ATTCTATTATATTATTATAT+TGG | + | chr2_1:15492174-15492193 | None:intergenic | 5.0% |
| AGTAGATCGCATCCTGGGTT+GGG | + | chr2_1:15490912-15490931 | None:intergenic | 50.0% | |
| AAGTAGATCGCATCCTGGGT+TGG | + | chr2_1:15490913-15490932 | None:intergenic | 50.0% | |
| CACATCCTAGATCGCAGTTG+CGG | + | chr2_1:15491645-15491664 | None:intergenic | 50.0% | |
| GATGGGTCGGTCAAATAGGT+AGG | - | chr2_1:15492147-15492166 | Msa0197490:intron | 50.0% | |
| AACCTATGATGACCCTGCCT+TGG | - | chr2_1:15492398-15492417 | Msa0197490:intron | 50.0% | |
| TACCAAGGCAGGGTCATCAT+AGG | + | chr2_1:15492403-15492422 | None:intergenic | 50.0% | |
| GCTTCTGATTCTACCAAGGC+AGG | + | chr2_1:15492414-15492433 | None:intergenic | 50.0% | |
| AACGTGTGCAACTATGCACC+AGG | - | chr2_1:15492645-15492664 | Msa0197490:intron | 50.0% | |
| ! | CACGTTGCCACATGATTTGC+AGG | - | chr2_1:15492959-15492978 | Msa0197490:CDS | 50.0% |
| CATCTGGCTGTAGAGGAGAA+TGG | - | chr2_1:15493030-15493049 | Msa0197490:CDS | 50.0% | |
| CAGGAGAATGGTCGGAATGT+TGG | + | chr2_1:15493161-15493180 | None:intergenic | 50.0% | |
| CAACATTCCGACCATTCTCC+TGG | - | chr2_1:15493159-15493178 | Msa0197490:CDS | 50.0% | |
| AGCAGAATCTCCCACACCAT+AGG | + | chr2_1:15494600-15494619 | None:intergenic | 50.0% | |
| GTACTACGGTAGTGCCAATC+TGG | + | chr2_1:15494645-15494664 | None:intergenic | 50.0% | |
| CAAGGAGATATCCCAATGGC+CGG | - | chr2_1:15494896-15494915 | Msa0197490:intron | 50.0% | |
| ! | CTGTGGATTAACCGGCCATT+GGG | + | chr2_1:15494910-15494929 | None:intergenic | 50.0% |
| CAATGGCCGGTTAATCCACA+GGG | - | chr2_1:15494909-15494928 | Msa0197490:intron | 50.0% | |
| ! | GCATGACCCTGTGGATTAAC+CGG | + | chr2_1:15494918-15494937 | None:intergenic | 50.0% |
| TGCCATAAAGCATGACCCTG+TGG | + | chr2_1:15494927-15494946 | None:intergenic | 50.0% | |
| GTTGAGCACGGCAAAACATC+AGG | + | chr2_1:15494989-15495008 | None:intergenic | 50.0% | |
| CATCAAATTCCCAACTGGCC+TGG | + | chr2_1:15495478-15495497 | None:intergenic | 50.0% | |
| AAGATCACTCACGCCGTACG+AGG | - | chr2_1:15490799-15490818 | Msa0197490:three_prime_UTR | 55.0% | |
| !! | GGAGGGATAGTGGATGTAGC+TGG | - | chr2_1:15492298-15492317 | Msa0197490:intron | 55.0% |
| TAGTGAGACAGCTATGCCGG+TGG | + | chr2_1:15493718-15493737 | None:intergenic | 55.0% | |
| ! | CCTGTGGATTAACCGGCCAT+TGG | + | chr2_1:15494911-15494930 | None:intergenic | 55.0% |
| CCAATGGCCGGTTAATCCAC+AGG | - | chr2_1:15494908-15494927 | Msa0197490:intron | 55.0% | |
| ! | TTTTGCCGTGCTCAACAGCG+TGG | - | chr2_1:15494993-15495012 | Msa0197490:intron | 55.0% |
| GAGGTCCGCAACTGCGATCT+AGG | - | chr2_1:15491637-15491656 | Msa0197490:CDS | 60.0% | |
| GCGTCCTCTGCATCTGACTG+TGG | - | chr2_1:15491710-15491729 | Msa0197490:intron | 60.0% | |
| CCACTTGGCGCACACATCTG+CGG | + | chr2_1:15494808-15494827 | None:intergenic | 60.0% | |
| ACCAGCCACGCTGTTGAGCA+CGG | + | chr2_1:15495001-15495020 | None:intergenic | 60.0% | |
| CCGCAGATGTGTGCGCCAAG+TGG | - | chr2_1:15494805-15494824 | Msa0197490:intron | 65.0% | |
| CGCAGGAGCGAACCCAACCC+AGG | - | chr2_1:15490897-15490916 | Msa0197490:three_prime_UTR | 70.0% | |
| GCCGTGCTCAACAGCGTGGC+TGG | - | chr2_1:15494997-15495016 | Msa0197490:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 15490737 | 15495524 | 15490737 | ID=Msa0197490;Name=Msa0197490 |
| chr2_1 | mRNA | 15490737 | 15495524 | 15490737 | ID=Msa0197490-mRNA-1;Parent=Msa0197490;Name=Msa0197490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=286|1|1|1|0.5|0.33|3|436|255 |
| chr2_1 | exon | 15490737 | 15491686 | 15490737 | ID=Msa0197490-mRNA-1:exon:6547;Parent=Msa0197490-mRNA-1 |
| chr2_1 | exon | 15492959 | 15493280 | 15492959 | ID=Msa0197490-mRNA-1:exon:6546;Parent=Msa0197490-mRNA-1 |
| chr2_1 | exon | 15495307 | 15495524 | 15495307 | ID=Msa0197490-mRNA-1:exon:6545;Parent=Msa0197490-mRNA-1 |
| chr2_1 | five_prime_UTR | 15495307 | 15495524 | 15495307 | ID=Msa0197490-mRNA-1:five_prime_utr;Parent=Msa0197490-mRNA-1 |
| chr2_1 | five_prime_UTR | 15493213 | 15493280 | 15493213 | ID=Msa0197490-mRNA-1:five_prime_utr;Parent=Msa0197490-mRNA-1 |
| chr2_1 | CDS | 15492959 | 15493212 | 15492959 | ID=Msa0197490-mRNA-1:cds;Parent=Msa0197490-mRNA-1 |
| chr2_1 | CDS | 15491173 | 15491686 | 15491173 | ID=Msa0197490-mRNA-1:cds;Parent=Msa0197490-mRNA-1 |
| chr2_1 | three_prime_UTR | 15490737 | 15491172 | 15490737 | ID=Msa0197490-mRNA-1:three_prime_utr;Parent=Msa0197490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
