AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0239110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239110 MtrunA17_Chr2g0289711 100.000 255 0 0 1 255 1 255 0.0 532
Msa0239110 MtrunA17_Chr4g0075661 83.137 255 43 0 1 255 1 255 5.50e-164 454
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239110 AT4G22330.1 83.922 255 41 0 1 255 1 255 5.97e-165 456

Find 86 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTACTATCTTCCCTTAT+TGG 0.119063 2_2:-13244196 None:intergenic
ATCCACAGGGTCATGCTTTA+TGG 0.141060 2_2:+13244036 Msa0239110:CDS
ATCTTAAACGACATTAATAT+TGG 0.207036 2_2:-13239363 None:intergenic
ACATTAATATTGGGTTAATT+AGG 0.211925 2_2:-13239353 None:intergenic
CCGAAATTCGTTCGTTTATT+CGG 0.222369 2_2:+13244137 Msa0239110:CDS
AGTTATCAATGTTTCGTTCT+TGG 0.238962 2_2:+13244255 Msa0239110:three_prime_UTR
ATGCCATATGGATGCTTTCT+TGG 0.243312 2_2:+13244369 Msa0239110:three_prime_UTR
CCGAATAAACGAACGAATTT+CGG 0.256613 2_2:-13244137 None:intergenic
CATGTTGTGTAGCCCTTTCT+AGG 0.261233 2_2:+13244491 Msa0239110:three_prime_UTR
ATGTAATACTTGTACATTCT+TGG 0.273154 2_2:-13243891 None:intergenic
ACCATTCTCCTGGCTTTCAT+TGG 0.316082 2_2:+13242281 Msa0239110:CDS
TTCTACTAGGAAGTTTGTTT+TGG 0.323549 2_2:+13243967 Msa0239110:CDS
CAGAAACGATATCTAGCTTC+TGG 0.333834 2_2:+13242165 Msa0239110:CDS
GCATCCATATGGCATAAATA+TGG 0.345257 2_2:-13244361 None:intergenic
CACTCAATAGTTGATGTAAC+TGG 0.360779 2_2:-13242191 None:intergenic
AAAGTAATGTTAACAGTCTA+AGG 0.377967 2_2:-13244392 None:intergenic
GCCGTGCTCAACAGCGTGGC+TGG 0.384130 2_2:+13244111 Msa0239110:CDS
TCTTAAACGACATTAATATT+GGG 0.386815 2_2:-13239362 None:intergenic
TCAAATATGACGCTTGCCTT+TGG 0.392633 2_2:+13242359 Msa0239110:CDS
CAGGAAAGTGTTTGCAAAGT+AGG 0.394936 2_2:-13244081 None:intergenic
ATTTCAAAATGAAAGTTTCC+AGG 0.400012 2_2:+13244572 Msa0239110:three_prime_UTR
GCATGACCCTGTGGATTAAC+CGG 0.418952 2_2:-13244029 None:intergenic
TACTCAAAACTCACCTAGAA+AGG 0.423500 2_2:-13244504 None:intergenic
CAACATTCCGACCATTCTCC+TGG 0.430879 2_2:+13242271 Msa0239110:CDS
TGTACCATATTTATGCCATA+TGG 0.442440 2_2:+13244357 Msa0239110:three_prime_UTR
GTACTACGGTAGTGCCAATC+TGG 0.453661 2_2:-13243756 None:intergenic
TCATTTGTCCGTTTCGACAT+TGG 0.453662 2_2:+13243828 Msa0239110:CDS
CATCAAATTCCCAACTGGCC+TGG 0.454091 2_2:-13244590 None:intergenic
CTGATTTAGATTGGTGTAAG+TGG 0.458286 2_2:+13244295 Msa0239110:three_prime_UTR
AGTAGATCGCATCCTGGGTT+GGG 0.461992 2_2:-13239491 None:intergenic
CTGTGGATTAACCGGCCATT+GGG 0.462085 2_2:-13244021 None:intergenic
AACCAGTACAGCAAAACCTT+TGG 0.474179 2_2:-13244421 None:intergenic
GGTCAGATTAACAGAACAAA+AGG 0.476863 2_2:-13239425 None:intergenic
GTTGAGCACGGCAAAACATC+AGG 0.477135 2_2:-13244100 None:intergenic
ATCTAGTTAAGCAAATCATC+TGG 0.486207 2_2:+13242126 Msa0239110:five_prime_UTR
TGTCGAAACGGACAAATGAA+TGG 0.488334 2_2:-13243824 None:intergenic
CCAATGGCCGGTTAATCCAC+AGG 0.505612 2_2:+13244022 Msa0239110:CDS
AACTTCAAAAGTGCTTTCAC+CGG 0.506122 2_2:+13244546 Msa0239110:three_prime_UTR
CATAACATCAAATTCCCAAC+TGG 0.507693 2_2:-13244595 None:intergenic
GGAGACAGAGAATGACATAA+TGG 0.509746 2_2:-13243860 None:intergenic
TGAAAGTTTCCAGGCCAGTT+GGG 0.511129 2_2:+13244581 Msa0239110:three_prime_UTR
CCTGTGGATTAACCGGCCAT+TGG 0.512230 2_2:-13244022 None:intergenic
AAGTAGATCGCATCCTGGGT+TGG 0.520586 2_2:-13239492 None:intergenic
ATGAAAGTTTCCAGGCCAGT+TGG 0.521820 2_2:+13244580 Msa0239110:three_prime_UTR
AGGCCAAGAAAGCATCCATA+TGG 0.522886 2_2:-13244372 None:intergenic
CGCAGGAGCGAACCCAACCC+AGG 0.528920 2_2:+13239479 Msa0239110:five_prime_UTR
AGTATGTTATTATTAACTTG+TGG 0.529421 2_2:+13244523 Msa0239110:three_prime_UTR
ACTCAAAACTCACCTAGAAA+GGG 0.533736 2_2:-13244503 None:intergenic
CAGGAGAATGGTCGGAATGT+TGG 0.537529 2_2:-13242270 None:intergenic
CAATACTTACACATGTTGTA+AGG 0.538998 2_2:-13242402 None:intergenic
TTATAAGACCAATGAAAGCC+AGG 0.540378 2_2:-13242289 None:intergenic
AAGATAGTAGAAGATGATGA+AGG 0.542905 2_2:+13244206 Msa0239110:three_prime_UTR
CTTTGAAGCCAATGTCGAAA+CGG 0.545401 2_2:-13243836 None:intergenic
ACCAATGAAAGCCAGGAGAA+TGG 0.545610 2_2:-13242282 None:intergenic
AGAAACGATATCTAGCTTCT+GGG 0.546726 2_2:+13242166 Msa0239110:CDS
ACCAGCCACGCTGTTGAGCA+CGG 0.551632 2_2:-13244112 None:intergenic
AGCAAATCATCTGGCTGTAG+AGG 0.552533 2_2:+13242135 Msa0239110:five_prime_UTR
ACTTCAAAAGTGCTTTCACC+GGG 0.560367 2_2:+13244547 Msa0239110:three_prime_UTR
AACAGAACAAAAGGATGGGT+CGG 0.561669 2_2:-13239416 None:intergenic
CCGCAGATGTGTGCGCCAAG+TGG 0.568975 2_2:+13243919 Msa0239110:CDS
GTATAGCTTTGCTATCCACT+TGG 0.575023 2_2:-13243934 None:intergenic
AGATTAACAGAACAAAAGGA+TGG 0.575396 2_2:-13239421 None:intergenic
GAAACAAGTAGATCGCATCC+TGG 0.579481 2_2:-13239497 None:intergenic
ACATTCTCTACTCTCCAGAT+TGG 0.579595 2_2:+13243742 Msa0239110:CDS
CAAGGAGATATCCCAATGGC+CGG 0.579972 2_2:+13244010 Msa0239110:CDS
GCAGAGTGATGAAACACCTA+TGG 0.586255 2_2:+13243695 Msa0239110:CDS
AAACAAGTAGATCGCATCCT+GGG 0.599633 2_2:-13239496 None:intergenic
ACACATGTTGTAAGGTAGCA+TGG 0.603729 2_2:-13242394 None:intergenic
AAGATCACTCACGCCGTACG+AGG 0.604425 2_2:+13239381 Msa0239110:five_prime_UTR
GGAAGATGGGCATTGTACTA+CGG 0.605779 2_2:-13243770 None:intergenic
ATGGTATAGCATGCTTCCAA+AGG 0.607163 2_2:-13242375 None:intergenic
TGTACATTCTTGGAATGCAG+AGG 0.615036 2_2:-13243881 None:intergenic
ATGAAAGCCAGGAGAATGGT+CGG 0.616633 2_2:-13242278 None:intergenic
CAAACTTCCTAGTAGAAGAG+TGG 0.618523 2_2:-13243961 None:intergenic
TACGTAGCCACTCTTCTACT+AGG 0.620775 2_2:+13243954 Msa0239110:CDS
CATCTGGCTGTAGAGGAGAA+TGG 0.624178 2_2:+13242142 Msa0239110:exon
GATTAACAGAACAAAAGGAT+GGG 0.626782 2_2:-13239420 None:intergenic
AGCAGAATCTCCCACACCAT+AGG 0.634318 2_2:-13243711 None:intergenic
CCACTTGGCGCACACATCTG+CGG 0.634725 2_2:-13243919 None:intergenic
CAATGGCCGGTTAATCCACA+GGG 0.640873 2_2:+13244023 Msa0239110:CDS
GAAACGATATCTAGCTTCTG+GGG 0.664142 2_2:+13242167 Msa0239110:CDS
TGCCATAAAGCATGACCCTG+TGG 0.673570 2_2:-13244038 None:intergenic
GTGATGAAACACCTATGGTG+TGG 0.683307 2_2:+13243700 Msa0239110:CDS
TGATGAAACACCTATGGTGT+GGG 0.688402 2_2:+13243701 Msa0239110:CDS
ACGGACAAATGAATGGACAA+CGG 0.707160 2_2:-13243817 None:intergenic
TCTGCAAGGAGATATCCCAA+TGG 0.725537 2_2:+13244006 Msa0239110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTGAAAAAATTAATATT+CGG - chr2_2:13239449-13239468 None:intergenic 10.0%
!! CATACATAAAAAAATAATAA+TGG - chr2_2:13239985-13240004 None:intergenic 10.0%
!! CAATAAAATACTATAATATT+GGG - chr2_2:13240703-13240722 None:intergenic 10.0%
!! TTAAATTAAAAGGAAAAAAA+TGG + chr2_2:13241385-13241404 Msa0239110:intron 10.0%
!!! TATAAATTTTTATTGATGTA+TGG - chr2_2:13242786-13242805 None:intergenic 10.0%
!!! TTTTTAAATTTTAATCCATG+TGG + chr2_2:13239820-13239839 Msa0239110:intron 15.0%
!!! TTTTAAATTTTAATCCATGT+GGG + chr2_2:13239821-13239840 Msa0239110:intron 15.0%
!! AACAAAAAAACATTGTAATT+TGG - chr2_2:13239905-13239924 None:intergenic 15.0%
!!! TTTTTTATGTATGTGTAATA+AGG + chr2_2:13239992-13240011 Msa0239110:intron 15.0%
!! CCAATAAAATACTATAATAT+TGG - chr2_2:13240704-13240723 None:intergenic 15.0%
!!! CCAATATTATAGTATTTTAT+TGG + chr2_2:13240701-13240720 Msa0239110:intron 15.0%
!!! TTGTTATTTTATAGAAAACA+AGG + chr2_2:13240859-13240878 Msa0239110:intron 15.0%
!!! TTCATTTTTATTTTCAAAGT+AGG - chr2_2:13241669-13241688 None:intergenic 15.0%
!!! TACTTTGAAAATAAAAATGA+AGG + chr2_2:13241668-13241687 Msa0239110:intron 15.0%
!!! ACTTTGAAAATAAAAATGAA+GGG + chr2_2:13241669-13241688 Msa0239110:intron 15.0%
!!! TTTTGTAACGAAAATATTAA+GGG + chr2_2:13242544-13242563 Msa0239110:intron 15.0%
!! AAAAAAATCAAGTTTATAAC+AGG + chr2_2:13243369-13243388 Msa0239110:intron 15.0%
!!! TTTTCTTTAATGATACATTT+TGG + chr2_2:13244229-13244248 Msa0239110:three_prime_UTR 15.0%
!! ACATTAATATTGGGTTAATT+AGG - chr2_2:13239356-13239375 None:intergenic 20.0%
!! TCTTAAACGACATTAATATT+GGG - chr2_2:13239365-13239384 None:intergenic 20.0%
!! ATCTTAAACGACATTAATAT+TGG - chr2_2:13239366-13239385 None:intergenic 20.0%
!!! TCATTTTGAATATCATAAGT+AGG + chr2_2:13240059-13240078 Msa0239110:intron 20.0%
!! CTTCAATATTTCCAAAATAT+CGG + chr2_2:13240578-13240597 Msa0239110:intron 20.0%
!! AATATACAAGCTAAAAATTG+CGG - chr2_2:13240653-13240672 None:intergenic 20.0%
!!! TTATTTTATAGAAAACAAGG+AGG + chr2_2:13240862-13240881 Msa0239110:intron 20.0%
!!! TATTTTATAGAAAACAAGGA+GGG + chr2_2:13240863-13240882 Msa0239110:intron 20.0%
!! TATTATATTATGGGAAATAC+TGG - chr2_2:13240956-13240975 None:intergenic 20.0%
!!! GGTTTTTGGTATTATATTAT+GGG - chr2_2:13240965-13240984 None:intergenic 20.0%
!!! AGGTTTTTGGTATTATATTA+TGG - chr2_2:13240966-13240985 None:intergenic 20.0%
!!! TTATCACACTATTTAGATTT+TGG + chr2_2:13241161-13241180 Msa0239110:intron 20.0%
!!! TATCACACTATTTAGATTTT+GGG + chr2_2:13241162-13241181 Msa0239110:intron 20.0%
!!! TTCCTTTTAATTTAATTCGA+GGG - chr2_2:13241380-13241399 None:intergenic 20.0%
!!! TTTCCTTTTAATTTAATTCG+AGG - chr2_2:13241381-13241400 None:intergenic 20.0%
!!! ATAAAAATGAAGGGTATTTT+TGG + chr2_2:13241678-13241697 Msa0239110:intron 20.0%
!!! AATTTGCTTATAAAACGTAA+CGG + chr2_2:13241770-13241789 Msa0239110:intron 20.0%
!!! TTATAAATGCTTTTAGACAA+CGG + chr2_2:13242306-13242325 Msa0239110:CDS 20.0%
!!! AATATTTTCGTTACAAAACA+AGG - chr2_2:13242542-13242561 None:intergenic 20.0%
!!! GTTTTGTAACGAAAATATTA+AGG + chr2_2:13242543-13242562 Msa0239110:intron 20.0%
!!! AAGACAAAATTTCCTTTTAT+GGG - chr2_2:13242608-13242627 None:intergenic 20.0%
!! AATAAGCCAGAAATATTAAT+TGG + chr2_2:13242740-13242759 Msa0239110:intron 20.0%
!! ATAAGCCAGAAATATTAATT+GGG + chr2_2:13242741-13242760 Msa0239110:intron 20.0%
!! ATGGAAATAAAGAAATACAA+GGG - chr2_2:13242940-13242959 None:intergenic 20.0%
!! TATGGAAATAAAGAAATACA+AGG - chr2_2:13242941-13242960 None:intergenic 20.0%
!! AAATAAGTTTGTCTAACATA+TGG - chr2_2:13242959-13242978 None:intergenic 20.0%
!!! TTTATAACAGGTTCTAATTT+AGG + chr2_2:13243381-13243400 Msa0239110:intron 20.0%
!!! TTTGTTTTTCTGATTTAGAT+TGG + chr2_2:13244286-13244305 Msa0239110:three_prime_UTR 20.0%
!!! ATATATTTTGTTGCAGTTTT+AGG + chr2_2:13244331-13244350 Msa0239110:three_prime_UTR 20.0%
!!! AGTATGTTATTATTAACTTG+TGG + chr2_2:13244523-13244542 Msa0239110:three_prime_UTR 20.0%
!!! GGGTTAATTAGGTTTTTTTT+GGG - chr2_2:13239345-13239364 None:intergenic 25.0%
!!! TGGGTTAATTAGGTTTTTTT+TGG - chr2_2:13239346-13239365 None:intergenic 25.0%
!! CTTATATATTTTCACCATCT+GGG + chr2_2:13239577-13239596 Msa0239110:intron 25.0%
!!! AGCGTTTTTTTTTGCTTATA+TGG + chr2_2:13239635-13239654 Msa0239110:intron 25.0%
!!! ACCCTTTTGTTTAATTTGAA+CGG + chr2_2:13239712-13239731 Msa0239110:intron 25.0%
! TCCGTTCAAATTAAACAAAA+GGG - chr2_2:13239716-13239735 None:intergenic 25.0%
! TTCCGTTCAAATTAAACAAA+AGG - chr2_2:13239717-13239736 None:intergenic 25.0%
! GATCTGATTATATCTATCTT+CGG + chr2_2:13239843-13239862 Msa0239110:intron 25.0%
!!! TGTGTTTTGTAGTTGTTATT+TGG + chr2_2:13239929-13239948 Msa0239110:intron 25.0%
! GACAATTATTTGAACATTGT+TGG + chr2_2:13240036-13240055 Msa0239110:intron 25.0%
! AATTTACAGCTTCAATTGTT+AGG + chr2_2:13240083-13240102 Msa0239110:intron 25.0%
!!! TGGACATTGTTATTCTTTTA+AGG + chr2_2:13240135-13240154 Msa0239110:intron 25.0%
! AATCAAGTGTAAATCCTTAT+AGG + chr2_2:13240163-13240182 Msa0239110:intron 25.0%
!! AGTATTTTATTGGAAACTGA+TGG + chr2_2:13240711-13240730 Msa0239110:intron 25.0%
!! GTATTTTATTGGAAACTGAT+GGG + chr2_2:13240712-13240731 Msa0239110:intron 25.0%
!!! TCACTTTTAATTTCTGCTTA+TGG + chr2_2:13241192-13241211 Msa0239110:intron 25.0%
!! CTTTTGCTTATAAAACGTAA+CGG - chr2_2:13241279-13241298 None:intergenic 25.0%
!!! AATTTAATTCGAGGGTATTT+TGG - chr2_2:13241372-13241391 None:intergenic 25.0%
! TACCCTCGAATTAAATTAAA+AGG + chr2_2:13241375-13241394 Msa0239110:intron 25.0%
!!! TTCCTTTGTTATTCTTATTG+TGG - chr2_2:13241585-13241604 None:intergenic 25.0%
! TGATACAATCAAGTAGTAAT+GGG - chr2_2:13241620-13241639 None:intergenic 25.0%
! TTGATACAATCAAGTAGTAA+TGG - chr2_2:13241621-13241640 None:intergenic 25.0%
!! TATTTATTTGAACCGTTTTG+TGG + chr2_2:13241890-13241909 Msa0239110:intron 25.0%
!! TATGTATCATATCGGATTTT+TGG + chr2_2:13241920-13241939 Msa0239110:intron 25.0%
! TTCCTTAAACAATGTTCTTA+GGG - chr2_2:13242585-13242604 None:intergenic 25.0%
!! CAAGACAAAATTTCCTTTTA+TGG - chr2_2:13242609-13242628 None:intergenic 25.0%
!! CATAAAAGGAAATTTTGTCT+TGG + chr2_2:13242607-13242626 Msa0239110:intron 25.0%
!! AATTTTGTCTTGGAAATACA+AGG + chr2_2:13242617-13242636 Msa0239110:intron 25.0%
! ATTGTTTAAGGAATCAAAAG+AGG - chr2_2:13242691-13242710 None:intergenic 25.0%
! CAAAACCCAATTAATATTTC+TGG - chr2_2:13242749-13242768 None:intergenic 25.0%
!! CAGAAATATTAATTGGGTTT+TGG + chr2_2:13242747-13242766 Msa0239110:intron 25.0%
!!! ATATTAATTGGGTTTTGGTA+TGG + chr2_2:13242752-13242771 Msa0239110:intron 25.0%
! TGGAAATAAAGAAATACAAG+GGG - chr2_2:13242939-13242958 None:intergenic 25.0%
!! GGTTGATTATTGAACTATTT+TGG + chr2_2:13243073-13243092 Msa0239110:intron 25.0%
!! AGCTAACTTTTTACAATCAT+TGG + chr2_2:13243103-13243122 Msa0239110:intron 25.0%
!! GCTAACTTTTTACAATCATT+GGG + chr2_2:13243104-13243123 Msa0239110:intron 25.0%
! AATATTGTATGAGAAATGCT+AGG + chr2_2:13243145-13243164 Msa0239110:intron 25.0%
! ATATTGTATGAGAAATGCTA+GGG + chr2_2:13243146-13243165 Msa0239110:intron 25.0%
! AACTAACTGAATACAATATG+AGG - chr2_2:13243326-13243345 None:intergenic 25.0%
! ATATCATTCTCATATCTCAT+TGG - chr2_2:13243450-13243469 None:intergenic 25.0%
!! CAATCAATCTCTATTGTTTT+TGG + chr2_2:13243628-13243647 Msa0239110:intron 25.0%
! ATGTAATACTTGTACATTCT+TGG - chr2_2:13243894-13243913 None:intergenic 25.0%
! AAAGTAATGTTAACAGTCTA+AGG - chr2_2:13244395-13244414 None:intergenic 25.0%
!!! ACTTTCATTTTGAAATTTCC+CGG - chr2_2:13244568-13244587 None:intergenic 25.0%
! ATTTCAAAATGAAAGTTTCC+AGG + chr2_2:13244572-13244591 Msa0239110:three_prime_UTR 25.0%
!!! TAGGTTTTTTTTGGGTACAA+AGG - chr2_2:13239337-13239356 None:intergenic 30.0%
GATTAACAGAACAAAAGGAT+GGG - chr2_2:13239423-13239442 None:intergenic 30.0%
AGATTAACAGAACAAAAGGA+TGG - chr2_2:13239424-13239443 None:intergenic 30.0%
GTGAAAAAGATACATACTTG+AGG - chr2_2:13239534-13239553 None:intergenic 30.0%
CCAGATGGTGAAAATATATA+AGG - chr2_2:13239579-13239598 None:intergenic 30.0%
! CCTTATATATTTTCACCATC+TGG + chr2_2:13239576-13239595 Msa0239110:intron 30.0%
AAAAAAAACGCTTCATGCTT+GGG - chr2_2:13239627-13239646 None:intergenic 30.0%
AAAAAAAAACGCTTCATGCT+TGG - chr2_2:13239628-13239647 None:intergenic 30.0%
!! TCTGCAAATTTTGGTAGAAT+TGG + chr2_2:13239758-13239777 Msa0239110:intron 30.0%
!! TATTTGGTAGTGACTTATTG+TGG + chr2_2:13239945-13239964 Msa0239110:intron 30.0%
CTATTGAAAGAGAACCTATA+AGG - chr2_2:13240180-13240199 None:intergenic 30.0%
!!! TGAACCCTTGTTTTAAATAG+AGG + chr2_2:13240218-13240237 Msa0239110:intron 30.0%
!!! ACAGTTTTAGATAGTGGTAA+GGG - chr2_2:13240372-13240391 None:intergenic 30.0%
!!! ATGTTGTGTTGTTTTAGCAT+AGG + chr2_2:13240435-13240454 Msa0239110:intron 30.0%
AACACTGATGTTAATTCACA+AGG - chr2_2:13240472-13240491 None:intergenic 30.0%
! CATCAGTGTTGTTAAATATC+CGG + chr2_2:13240482-13240501 Msa0239110:intron 30.0%
TTGAAGTTGCTAAATCGTAT+CGG - chr2_2:13240564-13240583 None:intergenic 30.0%
CAAATATGGTATATCAGTCA+TGG + chr2_2:13240611-13240630 Msa0239110:intron 30.0%
GATTCAATTGAAGAAGTTGA+CGG + chr2_2:13241042-13241061 Msa0239110:intron 30.0%
AATGAGGACAATGATTATGT+TGG + chr2_2:13241084-13241103 Msa0239110:intron 30.0%
ATGAGGACAATGATTATGTT+GGG + chr2_2:13241085-13241104 Msa0239110:intron 30.0%
CCTTAATAAGTGTGAAATGA+CGG - chr2_2:13241302-13241321 None:intergenic 30.0%
TACAATTATCAAAACAAGCG+AGG + chr2_2:13241525-13241544 Msa0239110:intron 30.0%
ACAATTATCAAAACAAGCGA+GGG + chr2_2:13241526-13241545 Msa0239110:intron 30.0%
TGCCACAATAAGAATAACAA+AGG + chr2_2:13241580-13241599 Msa0239110:intron 30.0%
! AGTGTTATTAAATCGTATCG+CGG - chr2_2:13241960-13241979 None:intergenic 30.0%
TTATAGGGATGGAAACAATA+AGG - chr2_2:13242023-13242042 None:intergenic 30.0%
ATCTAGTTAAGCAAATCATC+TGG + chr2_2:13242126-13242145 Msa0239110:five_prime_UTR 30.0%
CAATACTTACACATGTTGTA+AGG - chr2_2:13242405-13242424 None:intergenic 30.0%
TTCCCTAAGAACATTGTTTA+AGG + chr2_2:13242580-13242599 Msa0239110:intron 30.0%
GTTCCTTAAACAATGTTCTT+AGG - chr2_2:13242586-13242605 None:intergenic 30.0%
TTGTTTAAGGAACCCATAAA+AGG + chr2_2:13242593-13242612 Msa0239110:intron 30.0%
AATGTTAACAAGTTCCCTTA+GGG - chr2_2:13242715-13242734 None:intergenic 30.0%
AAATGTTAACAAGTTCCCTT+AGG - chr2_2:13242716-13242735 None:intergenic 30.0%
! ACATTTGTGCATTTGAGTTA+GGG + chr2_2:13242881-13242900 Msa0239110:intron 30.0%
!!! AACTTATTTTTGCTACTGAG+AGG + chr2_2:13242970-13242989 Msa0239110:intron 30.0%
!!! AGGAAGGTTTTATTTCGATT+GGG + chr2_2:13242990-13243009 Msa0239110:intron 30.0%
! GATTGTAAAAAGTTAGCTCT+TGG - chr2_2:13243101-13243120 None:intergenic 30.0%
ATATTGGGTGAAATCTATGT+GGG - chr2_2:13243273-13243292 None:intergenic 30.0%
CTAATACTCACTCTCATATT+GGG - chr2_2:13243288-13243307 None:intergenic 30.0%
TCTAATACTCACTCTCATAT+TGG - chr2_2:13243289-13243308 None:intergenic 30.0%
! GATGTCCTTTTAATATAAGC+AGG + chr2_2:13243403-13243422 Msa0239110:intron 30.0%
AGACACCTGCTTATATTAAA+AGG - chr2_2:13243411-13243430 None:intergenic 30.0%
! GAAGAAAAGTGTAACTGAAA+AGG - chr2_2:13243511-13243530 None:intergenic 30.0%
! CATTTGTTGCTCTTGAATTT+AGG + chr2_2:13243667-13243686 Msa0239110:intron 30.0%
CCATAGAAAAATAGGAAGAT+GGG - chr2_2:13243786-13243805 None:intergenic 30.0%
ACCATAGAAAAATAGGAAGA+TGG - chr2_2:13243787-13243806 None:intergenic 30.0%
!! TTCTACTAGGAAGTTTGTTT+TGG + chr2_2:13243967-13243986 Msa0239110:CDS 30.0%
AAAAGCCAAAAAGCCAATAA+GGG + chr2_2:13244183-13244202 Msa0239110:CDS 30.0%
AAGATAGTAGAAGATGATGA+AGG + chr2_2:13244206-13244225 Msa0239110:three_prime_UTR 30.0%
AGTTATCAATGTTTCGTTCT+TGG + chr2_2:13244255-13244274 Msa0239110:three_prime_UTR 30.0%
TGTACCATATTTATGCCATA+TGG + chr2_2:13244357-13244376 Msa0239110:three_prime_UTR 30.0%
!! ACATTACTTTTGACAACCAA+AGG + chr2_2:13244405-13244424 Msa0239110:three_prime_UTR 30.0%
TACAAGTAAAAATGAGCTAC+TGG - chr2_2:13244467-13244486 None:intergenic 30.0%
GGTCAGATTAACAGAACAAA+AGG - chr2_2:13239428-13239447 None:intergenic 35.0%
TCAAACACAAAAACAAACGC+AGG + chr2_2:13239462-13239481 Msa0239110:five_prime_UTR 35.0%
! TGGATCTTCTCTGCAAATTT+TGG + chr2_2:13239749-13239768 Msa0239110:intron 35.0%
AGATATAATCAGATCCCACA+TGG - chr2_2:13239838-13239857 None:intergenic 35.0%
! CGGACCTCTATTTAAAACAA+GGG - chr2_2:13240225-13240244 None:intergenic 35.0%
!!! CACAGTTTTAGATAGTGGTA+AGG - chr2_2:13240373-13240392 None:intergenic 35.0%
!! TGACAATTCATTCTAGTTCC+AGG - chr2_2:13240396-13240415 None:intergenic 35.0%
! TTTATTGGAAACTGATGGGT+CGG + chr2_2:13240716-13240735 Msa0239110:intron 35.0%
! CACATTTTTCGCTTTCGTTT+GGG - chr2_2:13240801-13240820 None:intergenic 35.0%
! ACACATTTTTCGCTTTCGTT+TGG - chr2_2:13240802-13240821 None:intergenic 35.0%
AGAATCAGAAGCAGAGTTTA+AGG + chr2_2:13241005-13241024 Msa0239110:intron 35.0%
TGAGGACAATGATTATGTTG+GGG + chr2_2:13241086-13241105 Msa0239110:intron 35.0%
TTCAAACAACTAGTAGAACC+TGG - chr2_2:13241247-13241266 None:intergenic 35.0%
! TGCTTATAAAACGTAACGGA+GGG - chr2_2:13241774-13241793 None:intergenic 35.0%
TTGCTTATAAAACGTAACGG+AGG - chr2_2:13241773-13241792 None:intergenic 35.0%
CCGTCATTTCACACTTATTA+AGG + chr2_2:13241299-13241318 Msa0239110:intron 35.0%
TGTTATTCTTATTGTGGCAC+TGG - chr2_2:13241579-13241598 None:intergenic 35.0%
TTGCTTATAAAACGTAACGG+AGG + chr2_2:13241773-13241792 Msa0239110:intron 35.0%
! TGCTTATAAAACGTAACGGA+GGG + chr2_2:13241774-13241793 Msa0239110:intron 35.0%
GCTTACGCTATGTATCATAT+CGG + chr2_2:13241912-13241931 Msa0239110:intron 35.0%
! AGTCCTGCAACTTGTTTATA+GGG - chr2_2:13242038-13242057 None:intergenic 35.0%
! TTGCAGGACTGATTGTATTT+TGG + chr2_2:13242048-13242067 Msa0239110:intron 35.0%
ACAAATTCCTGCAAATCATG+TGG - chr2_2:13242081-13242100 None:intergenic 35.0%
! AGAAACGATATCTAGCTTCT+GGG + chr2_2:13242166-13242185 Msa0239110:CDS 35.0%
! CACTCAATAGTTGATGTAAC+TGG - chr2_2:13242194-13242213 None:intergenic 35.0%
TTATAAGACCAATGAAAGCC+AGG - chr2_2:13242292-13242311 None:intergenic 35.0%
ATTCCTTAAACAATGCCCTA+AGG + chr2_2:13242697-13242716 Msa0239110:intron 35.0%
TTCCTTAAACAATGCCCTAA+GGG + chr2_2:13242698-13242717 Msa0239110:intron 35.0%
! GACATTTGTGCATTTGAGTT+AGG + chr2_2:13242880-13242899 Msa0239110:intron 35.0%
! CATTTGTGCATTTGAGTTAG+GGG + chr2_2:13242882-13242901 Msa0239110:intron 35.0%
! ATTTGTGCATTTGAGTTAGG+GGG + chr2_2:13242883-13242902 Msa0239110:intron 35.0%
AGAAATACAAGGGGAGAAAA+GGG - chr2_2:13242930-13242949 None:intergenic 35.0%
AAGAAATACAAGGGGAGAAA+AGG - chr2_2:13242931-13242950 None:intergenic 35.0%
!! TATTTTTGCTACTGAGAGGA+AGG + chr2_2:13242974-13242993 Msa0239110:intron 35.0%
!!! GAGGAAGGTTTTATTTCGAT+TGG + chr2_2:13242989-13243008 Msa0239110:intron 35.0%
TAGCTGTTTGATTATGCTTG+AGG + chr2_2:13243051-13243070 Msa0239110:intron 35.0%
AGCTGTTTGATTATGCTTGA+GGG + chr2_2:13243052-13243071 Msa0239110:intron 35.0%
TCTAACACTCACTCTCTTAT+TGG + chr2_2:13243191-13243210 Msa0239110:intron 35.0%
CTAACACTCACTCTCTTATT+GGG + chr2_2:13243192-13243211 Msa0239110:intron 35.0%
! GAAATGGGTTCCACATAAAA+TGG - chr2_2:13243238-13243257 None:intergenic 35.0%
CATATTGGGTGAAATCTATG+TGG - chr2_2:13243274-13243293 None:intergenic 35.0%
!! AATACAATATGAGGAGTGCT+AGG - chr2_2:13243317-13243336 None:intergenic 35.0%
!! CCCATCTTCCTATTTTTCTA+TGG + chr2_2:13243783-13243802 Msa0239110:CDS 35.0%
AAGCAGCACCATAGAAAAAT+AGG - chr2_2:13243794-13243813 None:intergenic 35.0%
! TGCTTTATGGCATGTTTTCA+TGG + chr2_2:13244049-13244068 Msa0239110:CDS 35.0%
! GCTTTATGGCATGTTTTCAT+GGG + chr2_2:13244050-13244069 Msa0239110:CDS 35.0%
CCGAATAAACGAACGAATTT+CGG - chr2_2:13244140-13244159 None:intergenic 35.0%
CCGAAATTCGTTCGTTTATT+CGG + chr2_2:13244137-13244156 Msa0239110:CDS 35.0%
! GGCTTTTCAATCTTCACATA+TGG - chr2_2:13244170-13244189 None:intergenic 35.0%
GAAAAGCCAAAAAGCCAATA+AGG + chr2_2:13244182-13244201 Msa0239110:CDS 35.0%
!!! ATCTTCCCTTATTGGCTTTT+TGG - chr2_2:13244191-13244210 None:intergenic 35.0%
CTTCTACTATCTTCCCTTAT+TGG - chr2_2:13244199-13244218 None:intergenic 35.0%
CTGATTTAGATTGGTGTAAG+TGG + chr2_2:13244295-13244314 Msa0239110:three_prime_UTR 35.0%
GCATCCATATGGCATAAATA+TGG - chr2_2:13244364-13244383 None:intergenic 35.0%
ACTCAAAACTCACCTAGAAA+GGG - chr2_2:13244506-13244525 None:intergenic 35.0%
TACTCAAAACTCACCTAGAA+AGG - chr2_2:13244507-13244526 None:intergenic 35.0%
!! AACTTCAAAAGTGCTTTCAC+CGG + chr2_2:13244546-13244565 Msa0239110:three_prime_UTR 35.0%
CATAACATCAAATTCCCAAC+TGG - chr2_2:13244598-13244617 None:intergenic 35.0%
! GATGATCTCTTTTCCTCGTA+CGG - chr2_2:13239397-13239416 None:intergenic 40.0%
AACAGAACAAAAGGATGGGT+CGG - chr2_2:13239419-13239438 None:intergenic 40.0%
AAACAAGTAGATCGCATCCT+GGG - chr2_2:13239499-13239518 None:intergenic 40.0%
CATAAAAACAACGACCCAGA+TGG - chr2_2:13239594-13239613 None:intergenic 40.0%
GAACGGAAAACGATTCAGAT+TGG + chr2_2:13239729-13239748 Msa0239110:intron 40.0%
GTTTGTGTCTTGCGTTTGTA+TGG + chr2_2:13240115-13240134 Msa0239110:intron 40.0%
! GCGGACCTCTATTTAAAACA+AGG - chr2_2:13240226-13240245 None:intergenic 40.0%
CATTGCAGTTCTTGACATTG+CGG - chr2_2:13240340-13240359 None:intergenic 40.0%
!! GCAGTATAGCACTGATATAC+CGG - chr2_2:13240504-13240523 None:intergenic 40.0%
CTCTTCCGTATCGAAAGTTA+GGG + chr2_2:13240523-13240542 Msa0239110:intron 40.0%
GTCTACCCTAACTTTCGATA+CGG - chr2_2:13240531-13240550 None:intergenic 40.0%
! GTGCAATCTCTCCGATATTT+TGG - chr2_2:13240592-13240611 None:intergenic 40.0%
TCGGAGAGATTGCACAAATA+TGG + chr2_2:13240597-13240616 Msa0239110:intron 40.0%
ATCAGTCATGGCATGCATAT+CGG + chr2_2:13240623-13240642 Msa0239110:intron 40.0%
CGAAAGCGAAAAATGTGTAG+TGG + chr2_2:13240804-13240823 Msa0239110:intron 40.0%
TAGAAAACAAGGAGGGATAG+TGG + chr2_2:13240870-13240889 Msa0239110:intron 40.0%
TGCCTCAGTATCTGAAAATG+AGG + chr2_2:13241068-13241087 Msa0239110:intron 40.0%
! GTCCTCATTTTCAGATACTG+AGG - chr2_2:13241073-13241092 None:intergenic 40.0%
CAATGATTATGTTGGGGAAG+AGG + chr2_2:13241092-13241111 Msa0239110:intron 40.0%
AAAACCAAAACCAAAACGCG+TGG + chr2_2:13241438-13241457 Msa0239110:intron 40.0%
TTAGTCTCCTTGCATGGTAT+TGG - chr2_2:13241552-13241571 None:intergenic 40.0%
ACATAGCGTAAGCCACAAAA+CGG - chr2_2:13241905-13241924 None:intergenic 40.0%
! CTGCAACTTGTTTATAGGGA+TGG - chr2_2:13242034-13242053 None:intergenic 40.0%
CATCCCTATAAACAAGTTGC+AGG + chr2_2:13242032-13242051 Msa0239110:intron 40.0%
! CAGTCCTGCAACTTGTTTAT+AGG - chr2_2:13242039-13242058 None:intergenic 40.0%
! CAGAAACGATATCTAGCTTC+TGG + chr2_2:13242165-13242184 Msa0239110:CDS 40.0%
! GAAACGATATCTAGCTTCTG+GGG + chr2_2:13242167-13242186 Msa0239110:CDS 40.0%
TCAAATATGACGCTTGCCTT+TGG + chr2_2:13242359-13242378 Msa0239110:CDS 40.0%
ATGGTATAGCATGCTTCCAA+AGG - chr2_2:13242378-13242397 None:intergenic 40.0%
ACACATGTTGTAAGGTAGCA+TGG - chr2_2:13242397-13242416 None:intergenic 40.0%
!! TTCCCTTAGGGCATTGTTTA+AGG - chr2_2:13242703-13242722 None:intergenic 40.0%
TTATTGGGTGAAACCCAAGT+GGG + chr2_2:13243207-13243226 Msa0239110:intron 40.0%
TAAAATGGTGAGACCCACTT+GGG - chr2_2:13243223-13243242 None:intergenic 40.0%
ATAAAATGGTGAGACCCACT+TGG - chr2_2:13243224-13243243 None:intergenic 40.0%
TTTCTTCTGCTGAAGCTCTT+AGG + chr2_2:13243524-13243543 Msa0239110:intron 40.0%
CTATCGTAATCGTAATGCGT+AGG + chr2_2:13243565-13243584 Msa0239110:intron 40.0%
TGATGAAACACCTATGGTGT+GGG + chr2_2:13243701-13243720 Msa0239110:CDS 40.0%
ACATTCTCTACTCTCCAGAT+TGG + chr2_2:13243742-13243761 Msa0239110:CDS 40.0%
ACGGACAAATGAATGGACAA+CGG - chr2_2:13243820-13243839 None:intergenic 40.0%
TGTCGAAACGGACAAATGAA+TGG - chr2_2:13243827-13243846 None:intergenic 40.0%
TCATTTGTCCGTTTCGACAT+TGG + chr2_2:13243828-13243847 Msa0239110:CDS 40.0%
!! CTTTGAAGCCAATGTCGAAA+CGG - chr2_2:13243839-13243858 None:intergenic 40.0%
GGAGACAGAGAATGACATAA+TGG - chr2_2:13243863-13243882 None:intergenic 40.0%
TGTACATTCTTGGAATGCAG+AGG - chr2_2:13243884-13243903 None:intergenic 40.0%
! GTATAGCTTTGCTATCCACT+TGG - chr2_2:13243937-13243956 None:intergenic 40.0%
CAAACTTCCTAGTAGAAGAG+TGG - chr2_2:13243964-13243983 None:intergenic 40.0%
! ATGTGATCGAGTTTTCTGCA+AGG + chr2_2:13243992-13244011 Msa0239110:CDS 40.0%
!! CAGGAAAGTGTTTGCAAAGT+AGG - chr2_2:13244084-13244103 None:intergenic 40.0%
ATGCCATATGGATGCTTTCT+TGG + chr2_2:13244369-13244388 Msa0239110:three_prime_UTR 40.0%
!! AACCAAAGGTTTTGCTGTAC+TGG + chr2_2:13244419-13244438 Msa0239110:three_prime_UTR 40.0%
AACCAGTACAGCAAAACCTT+TGG - chr2_2:13244424-13244443 None:intergenic 40.0%
!! ACTTCAAAAGTGCTTTCACC+GGG + chr2_2:13244547-13244566 Msa0239110:three_prime_UTR 40.0%
GAAACAAGTAGATCGCATCC+TGG - chr2_2:13239500-13239519 None:intergenic 45.0%
! CGATCTAGGATGTGACATGT+CGG + chr2_2:13240251-13240270 Msa0239110:intron 45.0%
AGAGGACGCAATCACAATCA+TGG - chr2_2:13240299-13240318 None:intergenic 45.0%
AAAACCACAGTCAGATGCAG+AGG - chr2_2:13240317-13240336 None:intergenic 45.0%
! GATAGTGGTAAGGGTTGTTG+TGG - chr2_2:13240363-13240382 None:intergenic 45.0%
!!! CCAGGCACAGTTTTAGATAG+TGG - chr2_2:13240378-13240397 None:intergenic 45.0%
! CCACTATCTAAAACTGTGCC+TGG + chr2_2:13240375-13240394 Msa0239110:intron 45.0%
GCTCTTCCGTATCGAAAGTT+AGG + chr2_2:13240522-13240541 Msa0239110:intron 45.0%
! AACTGATGGGTCGGTCAAAT+AGG + chr2_2:13240725-13240744 Msa0239110:intron 45.0%
! GCAGGGTCATCATAGGTTTT+TGG - chr2_2:13240979-13240998 None:intergenic 45.0%
CTTCTGATTCTACCAAGGCA+GGG - chr2_2:13240996-13241015 None:intergenic 45.0%
CTCTGCTTCTGATTCTACCA+AGG - chr2_2:13241001-13241020 None:intergenic 45.0%
!!! CTTTCCACGCGTTTTGGTTT+TGG - chr2_2:13241445-13241464 None:intergenic 45.0%
AGGGATGGAAACAATAAGGC+AGG - chr2_2:13242019-13242038 None:intergenic 45.0%
AGCAAATCATCTGGCTGTAG+AGG + chr2_2:13242135-13242154 Msa0239110:five_prime_UTR 45.0%
ATGAAAGCCAGGAGAATGGT+CGG - chr2_2:13242281-13242300 None:intergenic 45.0%
! ACCATTCTCCTGGCTTTCAT+TGG + chr2_2:13242281-13242300 Msa0239110:CDS 45.0%
ACCAATGAAAGCCAGGAGAA+TGG - chr2_2:13242285-13242304 None:intergenic 45.0%
CATTAGTGAGACAGCTATGC+CGG - chr2_2:13242834-13242853 None:intergenic 45.0%
CTTATTGGGTGAAACCCAAG+TGG + chr2_2:13243206-13243225 Msa0239110:intron 45.0%
! GTGGGTCTCACCATTTTATG+TGG + chr2_2:13243225-13243244 Msa0239110:intron 45.0%
TGGAACCCATTTCCAAAGAG+TGG + chr2_2:13243245-13243264 Msa0239110:intron 45.0%
! GGGTACCACTCTTTGGAAAT+GGG - chr2_2:13243253-13243272 None:intergenic 45.0%
! TGGGTACCACTCTTTGGAAA+TGG - chr2_2:13243254-13243273 None:intergenic 45.0%
TCTATGTGGGTACCACTCTT+TGG - chr2_2:13243260-13243279 None:intergenic 45.0%
GCTGAAGCTCTTAGGCAATT+AGG + chr2_2:13243532-13243551 Msa0239110:intron 45.0%
GCAGAGTGATGAAACACCTA+TGG + chr2_2:13243695-13243714 Msa0239110:CDS 45.0%
GTGATGAAACACCTATGGTG+TGG + chr2_2:13243700-13243719 Msa0239110:CDS 45.0%
! GGAAGATGGGCATTGTACTA+CGG - chr2_2:13243773-13243792 None:intergenic 45.0%
TACGTAGCCACTCTTCTACT+AGG + chr2_2:13243954-13243973 Msa0239110:CDS 45.0%
TCTGCAAGGAGATATCCCAA+TGG + chr2_2:13244006-13244025 Msa0239110:CDS 45.0%
ATCCACAGGGTCATGCTTTA+TGG + chr2_2:13244036-13244055 Msa0239110:CDS 45.0%
!! AGGCCAAGAAAGCATCCATA+TGG - chr2_2:13244375-13244394 None:intergenic 45.0%
CATGTTGTGTAGCCCTTTCT+AGG + chr2_2:13244491-13244510 Msa0239110:three_prime_UTR 45.0%
ATGAAAGTTTCCAGGCCAGT+TGG + chr2_2:13244580-13244599 Msa0239110:three_prime_UTR 45.0%
TGAAAGTTTCCAGGCCAGTT+GGG + chr2_2:13244581-13244600 Msa0239110:three_prime_UTR 45.0%
!! TTCTATTATATTATTATATT+GGG - chr2_2:13240755-13240774 None:intergenic 5.0%
!! ATTCTATTATATTATTATAT+TGG - chr2_2:13240756-13240775 None:intergenic 5.0%
!! ATTATATATAAAATAAAGTA+TGG - chr2_2:13241870-13241889 None:intergenic 5.0%
AGTAGATCGCATCCTGGGTT+GGG - chr2_2:13239494-13239513 None:intergenic 50.0%
AAGTAGATCGCATCCTGGGT+TGG - chr2_2:13239495-13239514 None:intergenic 50.0%
CACATCCTAGATCGCAGTTG+CGG - chr2_2:13240245-13240264 None:intergenic 50.0%
GATGGGTCGGTCAAATAGGT+AGG + chr2_2:13240729-13240748 Msa0239110:intron 50.0%
AACCTATGATGACCCTGCCT+TGG + chr2_2:13240981-13241000 Msa0239110:intron 50.0%
TACCAAGGCAGGGTCATCAT+AGG - chr2_2:13240986-13241005 None:intergenic 50.0%
GCTTCTGATTCTACCAAGGC+AGG - chr2_2:13240997-13241016 None:intergenic 50.0%
AACGTGTGCAACTATGCACC+AGG + chr2_2:13241226-13241245 Msa0239110:intron 50.0%
! CTGCAACTTTCCACGCGTTT+TGG - chr2_2:13241451-13241470 None:intergenic 50.0%
! CACGTTGCCACATGATTTGC+AGG + chr2_2:13242071-13242090 Msa0239110:intron 50.0%
CATCTGGCTGTAGAGGAGAA+TGG + chr2_2:13242142-13242161 Msa0239110:exon 50.0%
CAGGAGAATGGTCGGAATGT+TGG - chr2_2:13242273-13242292 None:intergenic 50.0%
CAACATTCCGACCATTCTCC+TGG + chr2_2:13242271-13242290 Msa0239110:CDS 50.0%
AGCAGAATCTCCCACACCAT+AGG - chr2_2:13243714-13243733 None:intergenic 50.0%
GTACTACGGTAGTGCCAATC+TGG - chr2_2:13243759-13243778 None:intergenic 50.0%
CAAGGAGATATCCCAATGGC+CGG + chr2_2:13244010-13244029 Msa0239110:CDS 50.0%
! CTGTGGATTAACCGGCCATT+GGG - chr2_2:13244024-13244043 None:intergenic 50.0%
CAATGGCCGGTTAATCCACA+GGG + chr2_2:13244023-13244042 Msa0239110:CDS 50.0%
! GCATGACCCTGTGGATTAAC+CGG - chr2_2:13244032-13244051 None:intergenic 50.0%
TGCCATAAAGCATGACCCTG+TGG - chr2_2:13244041-13244060 None:intergenic 50.0%
GTTGAGCACGGCAAAACATC+AGG - chr2_2:13244103-13244122 None:intergenic 50.0%
CATCAAATTCCCAACTGGCC+TGG - chr2_2:13244593-13244612 None:intergenic 50.0%
AAGATCACTCACGCCGTACG+AGG + chr2_2:13239381-13239400 Msa0239110:five_prime_UTR 55.0%
!! GGAGGGATAGTGGATGTAGC+TGG + chr2_2:13240880-13240899 Msa0239110:intron 55.0%
CGTGGAAAGTTGCAGCTCGT+TGG + chr2_2:13241456-13241475 Msa0239110:intron 55.0%
! GGCACGTTAGTCTCCTTGCA+TGG - chr2_2:13241558-13241577 None:intergenic 55.0%
TAGTGAGACAGCTATGCCGG+TGG - chr2_2:13242831-13242850 None:intergenic 55.0%
! CCTGTGGATTAACCGGCCAT+TGG - chr2_2:13244025-13244044 None:intergenic 55.0%
CCAATGGCCGGTTAATCCAC+AGG + chr2_2:13244022-13244041 Msa0239110:CDS 55.0%
! TTTTGCCGTGCTCAACAGCG+TGG + chr2_2:13244107-13244126 Msa0239110:CDS 55.0%
GAGGTCCGCAACTGCGATCT+AGG + chr2_2:13240237-13240256 Msa0239110:intron 60.0%
GCGTCCTCTGCATCTGACTG+TGG + chr2_2:13240310-13240329 Msa0239110:intron 60.0%
GCGAGGGCCAATACCATGCA+AGG + chr2_2:13241542-13241561 Msa0239110:intron 60.0%
CCACTTGGCGCACACATCTG+CGG - chr2_2:13243922-13243941 None:intergenic 60.0%
ACCAGCCACGCTGTTGAGCA+CGG - chr2_2:13244115-13244134 None:intergenic 60.0%
CCGCAGATGTGTGCGCCAAG+TGG + chr2_2:13243919-13243938 Msa0239110:CDS 65.0%
CGCAGGAGCGAACCCAACCC+AGG + chr2_2:13239479-13239498 Msa0239110:five_prime_UTR 70.0%
GCCGTGCTCAACAGCGTGGC+TGG + chr2_2:13244111-13244130 Msa0239110:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 13239319 13244639 13239319 ID=Msa0239110;Name=Msa0239110
chr2_2 mRNA 13239319 13244639 13239319 ID=Msa0239110-mRNA-1;Parent=Msa0239110;Name=Msa0239110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=286|1|1|1|0.5|0.33|3|437|255
chr2_2 exon 13239319 13239536 13239319 ID=Msa0239110-mRNA-1:exon:5548;Parent=Msa0239110-mRNA-1
chr2_2 exon 13242093 13242414 13242093 ID=Msa0239110-mRNA-1:exon:5549;Parent=Msa0239110-mRNA-1
chr2_2 exon 13243689 13244639 13243689 ID=Msa0239110-mRNA-1:exon:5550;Parent=Msa0239110-mRNA-1
chr2_2 five_prime_UTR 13239319 13239536 13239319 ID=Msa0239110-mRNA-1:five_prime_utr;Parent=Msa0239110-mRNA-1
chr2_2 five_prime_UTR 13242093 13242160 13242093 ID=Msa0239110-mRNA-1:five_prime_utr;Parent=Msa0239110-mRNA-1
chr2_2 CDS 13242161 13242414 13242161 ID=Msa0239110-mRNA-1:cds;Parent=Msa0239110-mRNA-1
chr2_2 CDS 13243689 13244202 13243689 ID=Msa0239110-mRNA-1:cds;Parent=Msa0239110-mRNA-1
chr2_2 three_prime_UTR 13244203 13244639 13244203 ID=Msa0239110-mRNA-1:three_prime_utr;Parent=Msa0239110-mRNA-1
Gene Sequence

>Msa0239110

ATGGCAGAAACGATATCTAGCTTCTGGGGTCCAGTTACATCAACTATTGAGTGTTGTGAAAAAAATTATGCATACTCTTCTTATATTGCAGAATTCTACAACACAATATCCAACATTCCGACCATTCTCCTGGCTTTCATTGGTCTTATAAATGCTTTTAGACAACGGTTTGAGAAAAGATTTAGTGTTCTTCATGTATCAAATATGACGCTTGCCTTTGGAAGCATGCTATACCATGCTACCTTACAACATGTGCAACAGCAGAGTGATGAAACACCTATGGTGTGGGAGATTCTGCTGTACATGTACATTCTCTACTCTCCAGATTGGCACTACCGTAGTACAATGCCCATCTTCCTATTTTTCTATGGTGCTGCTTTTGCCGTTGTCCATTCATTTGTCCGTTTCGACATTGGCTTCAAAGTCCATTATGTCATTCTCTGTCTCCTCTGCATTCCAAGAATGTACAAGTATTACATCTATACCGCAGATGTGTGCGCCAAGTGGATAGCAAAGCTATACGTAGCCACTCTTCTACTAGGAAGTTTGTTTTGGTTATGTGATCGAGTTTTCTGCAAGGAGATATCCCAATGGCCGGTTAATCCACAGGGTCATGCTTTATGGCATGTTTTCATGGGACTCAATTCCTACTTTGCAAACACTTTCCTGATGTTTTGCCGTGCTCAACAGCGTGGCTGGTCTCCGAAATTCGTTCGTTTATTCGGTGTTTTGCCATATGTGAAGATTGAAAAGCCAAAAAGCCAATAA
Protein sequence

>Msa0239110

MAETISSFWGPVTSTIECCEKNYAYSSYIAEFYNTISNIPTILLAFIGLINAFRQRFEKRFSVLHVSNMTLAFGSMLYHATLQHVQQQSDETPMVWEILLYMYILYSPDWHYRSTMPIFLFFYGAAFAVVHSFVRFDIGFKVHYVILCLLCIPRMYKYYIYTADVCAKWIAKLYVATLLLGSLFWLCDRVFCKEISQWPVNPQGHALWHVFMGLNSYFANTFLMFCRAQQRGWSPKFVRLFGVLPYVKIEKPKSQ*