AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0197570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197570 MtrunA17_Chr2g0296621 95.349 344 15 1 1 344 1 343 0.0 666
Msa0197570 MtrunA17_Chr4g0076211 63.356 292 107 0 51 342 42 333 2.56e-142 406
Msa0197570 MtrunA17_Chr2g0292151 45.875 303 153 5 50 342 29 330 9.30e-83 255
Msa0197570 MtrunA17_Chr5g0402581 43.854 301 160 3 50 342 27 326 3.26e-82 253
Msa0197570 MtrunA17_Chr5g0404721 45.130 308 159 6 44 342 24 330 1.24e-81 251
Msa0197570 MtrunA17_Chr5g0402571 42.857 301 163 3 50 342 27 326 1.30e-81 251
Msa0197570 MtrunA17_Chr2g0292111 44.816 299 154 5 54 342 33 330 4.86e-81 251
Msa0197570 MtrunA17_Chr2g0291751 44.000 300 157 6 53 342 32 330 2.07e-79 246
Msa0197570 MtrunA17_Chr2g0292211 39.368 348 181 6 6 343 15 342 5.58e-79 245
Msa0197570 MtrunA17_Chr8g0372601 44.667 300 156 6 54 344 34 332 1.40e-78 243
Msa0197570 MtrunA17_Chr2g0292251 43.322 307 163 5 47 343 25 330 3.18e-78 243
Msa0197570 MtrunA17_Chr4g0046131 42.857 308 164 4 44 339 36 343 6.50e-78 242
Msa0197570 MtrunA17_Chr6g0460711 43.624 298 159 5 50 342 21 314 1.68e-77 240
Msa0197570 MtrunA17_Chr2g0292091 42.434 304 164 5 50 343 24 326 1.75e-77 241
Msa0197570 MtrunA17_Chr2g0292181 42.345 307 166 5 47 343 35 340 2.91e-77 241
Msa0197570 MtrunA17_Chr2g0322861 44.186 301 159 6 50 342 87 386 3.98e-77 241
Msa0197570 MtrunA17_Chr1g0194151 43.279 305 160 6 50 342 30 333 6.09e-77 239
Msa0197570 MtrunA17_Chr4g0063671 43.522 301 161 3 50 342 21 320 6.33e-77 239
Msa0197570 MtrunA17_Chr2g0292101 42.763 304 163 5 50 343 25 327 1.18e-76 239
Msa0197570 MtrunA17_Chr2g0292241 43.333 300 159 5 54 343 33 331 1.65e-76 239
Msa0197570 MtrunA17_Chr2g0279041 41.751 297 165 3 53 342 30 325 3.77e-76 237
Msa0197570 MtrunA17_Chr1g0194271 41.667 312 162 6 50 342 30 340 7.87e-76 237
Msa0197570 MtrunA17_Chr4g0024121 43.333 300 157 6 53 342 30 326 1.18e-75 236
Msa0197570 MtrunA17_Chr3g0128061 42.434 304 163 6 50 343 26 327 1.21e-75 236
Msa0197570 MtrunA17_Chr7g0268501 43.919 296 155 6 54 342 29 320 4.34e-75 234
Msa0197570 MtrunA17_Chr7g0268521 43.919 296 155 6 54 342 29 320 4.34e-75 234
Msa0197570 MtrunA17_Chr1g0175561 40.532 301 167 5 54 343 28 327 4.74e-75 234
Msa0197570 MtrunA17_Chr3g0106921 42.105 304 157 5 50 342 25 320 4.94e-75 234
Msa0197570 MtrunA17_Chr2g0292261 41.456 316 170 6 38 343 21 331 1.33e-74 234
Msa0197570 MtrunA17_Chr1g0188431 40.878 296 165 3 50 342 39 327 1.53e-74 233
Msa0197570 MtrunA17_Chr3g0114451 42.222 315 166 7 36 342 12 318 1.79e-73 230
Msa0197570 MtrunA17_Chr2g0320091 39.937 318 174 6 34 342 9 318 2.42e-73 229
Msa0197570 MtrunA17_Chr8g0371381 40.461 304 164 4 48 342 24 319 2.69e-73 229
Msa0197570 MtrunA17_Chr1g0164891 42.715 302 160 6 53 342 92 392 2.87e-73 232
Msa0197570 MtrunA17_Chr7g0258811 40.328 305 170 6 50 343 69 372 5.68e-73 230
Msa0197570 MtrunA17_Chr4g0038151 38.629 321 179 6 33 342 8 321 5.84e-73 229
Msa0197570 MtrunA17_Chr4g0038161 40.065 307 166 6 47 342 21 320 1.37e-72 228
Msa0197570 MtrunA17_Chr4g0013821 41.472 299 163 5 53 343 31 325 2.28e-72 228
Msa0197570 MtrunA17_Chr2g0292271 41.667 300 164 5 54 343 33 331 4.30e-72 228
Msa0197570 MtrunA17_Chr1g0157051 40.984 305 168 4 44 341 18 317 5.80e-72 226
Msa0197570 MtrunA17_Chr5g0432441 39.672 305 164 5 50 342 30 326 6.89e-72 226
Msa0197570 MtrunA17_Chr7g0254201 39.535 301 166 6 50 342 20 312 2.18e-71 224
Msa0197570 MtrunA17_Chr1g0155611 42.997 307 160 8 50 342 42 347 2.23e-71 225
Msa0197570 MtrunA17_Chr5g0400331 44.805 308 155 7 49 342 25 331 2.84e-71 224
Msa0197570 MtrunA17_Chr4g0070951 40.789 304 169 5 50 343 28 330 4.13e-71 224
Msa0197570 MtrunA17_Chr2g0320071 40.067 297 162 5 54 342 29 317 4.28e-71 224
Msa0197570 MtrunA17_Chr2g0320101 38.608 316 178 5 35 342 10 317 5.31e-71 223
Msa0197570 MtrunA17_Chr4g0013191 42.140 299 155 5 54 342 50 340 1.73e-70 223
Msa0197570 MtrunA17_Chr4g0043391 38.961 308 169 6 47 342 24 324 2.77e-70 222
Msa0197570 MtrunA17_Chr2g0292291 40.667 300 166 5 54 342 34 332 5.41e-70 222
Msa0197570 MtrunA17_Chr4g0038171 38.636 308 170 6 47 342 21 321 6.42e-70 221
Msa0197570 MtrunA17_Chr3g0129051 39.048 315 174 5 34 338 12 318 1.78e-69 220
Msa0197570 MtrunA17_Chr4g0013201 40.864 301 162 5 50 342 46 338 1.95e-69 220
Msa0197570 MtrunA17_Chr5g0405991 39.799 299 169 3 50 342 23 316 2.27e-69 219
Msa0197570 MtrunA17_Chr7g0224371 40.741 297 161 5 54 343 35 323 3.99e-69 219
Msa0197570 MtrunA17_Chr4g0068621 38.150 346 193 8 6 342 3 336 6.48e-69 219
Msa0197570 MtrunA17_Chr1g0213061 39.803 304 165 6 50 343 27 322 6.76e-69 218
Msa0197570 MtrunA17_Chr8g0364291 39.667 300 168 6 54 342 27 324 1.31e-68 218
Msa0197570 MtrunA17_Chr4g0013721 40.268 298 166 6 53 342 103 396 2.64e-68 219
Msa0197570 MtrunA17_Chr4g0013171 42.574 303 156 7 50 342 27 321 3.08e-68 216
Msa0197570 MtrunA17_Chr2g0320031 39.735 302 165 7 50 342 26 319 4.37e-68 216
Msa0197570 MtrunA17_Chr4g0072091 37.710 297 176 5 50 338 24 319 4.76e-68 216
Msa0197570 MtrunA17_Chr7g0244461 37.874 301 171 5 50 342 20 312 7.56e-68 215
Msa0197570 MtrunA17_Chr7g0254231 39.404 302 164 6 50 343 22 312 9.80e-68 215
Msa0197570 MtrunA17_Chr2g0320051 38.365 318 177 7 35 342 10 318 1.11e-67 215
Msa0197570 MtrunA17_Chr2g0299691 40.864 301 166 5 54 343 60 359 1.19e-67 216
Msa0197570 MtrunA17_Chr3g0129061 40.803 299 159 5 50 338 28 318 1.26e-67 215
Msa0197570 MtrunA17_Chr1g0181431 39.803 304 167 5 50 343 27 324 2.59e-67 214
Msa0197570 MtrunA17_Chr1g0204011 39.262 298 166 4 54 342 31 322 3.69e-67 214
Msa0197570 MtrunA17_Chr1g0197411 37.829 304 177 5 50 342 28 330 6.07e-67 214
Msa0197570 MtrunA17_Chr7g0244451 38.538 301 169 5 50 342 24 316 1.74e-66 212
Msa0197570 MtrunA17_Chr5g0401431 37.954 303 176 6 50 341 27 328 2.14e-66 212
Msa0197570 MtrunA17_Chr5g0438021 40.594 303 162 6 50 342 31 325 2.86e-66 211
Msa0197570 MtrunA17_Chr1g0181511 39.474 304 168 5 50 343 27 324 3.66e-66 211
Msa0197570 MtrunA17_Chr6g0467161 37.124 299 175 4 50 342 45 336 2.60e-65 209
Msa0197570 MtrunA17_Chr1g0148021 36.964 303 180 6 50 342 27 328 3.58e-65 209
Msa0197570 MtrunA17_Chr2g0320061 36.909 317 183 6 35 342 10 318 7.07e-65 208
Msa0197570 MtrunA17_Chr6g0477071 37.374 297 174 5 50 342 54 342 1.15e-64 208
Msa0197570 MtrunA17_Chr6g0451571 38.033 305 173 8 50 342 34 334 1.77e-64 207
Msa0197570 MtrunA17_Chr6g0467251 38.514 296 168 5 50 338 36 324 1.82e-64 207
Msa0197570 MtrunA17_Chr1g0181481 38.487 304 171 5 50 343 27 324 2.88e-64 206
Msa0197570 MtrunA17_Chr6g0467121 38.591 298 172 4 50 343 74 364 4.29e-64 208
Msa0197570 MtrunA17_Chr3g0106901 41.528 301 160 5 50 342 31 323 4.87e-64 206
Msa0197570 MtrunA17_Chr2g0316481 36.474 329 169 6 50 339 76 403 6.09e-63 206
Msa0197570 MtrunA17_Chr2g0278671 40.066 302 170 5 50 342 24 323 6.77e-63 203
Msa0197570 MtrunA17_Chr2g0316791 37.994 329 164 8 50 339 76 403 1.18e-62 205
Msa0197570 MtrunA17_Chr3g0129041 40.264 303 163 6 50 342 28 322 1.87e-62 202
Msa0197570 MtrunA17_Chr2g0316191 36.970 330 167 7 50 339 76 404 2.67e-62 204
Msa0197570 MtrunA17_Chr2g0316831 36.280 328 169 6 50 338 112 438 3.12e-62 204
Msa0197570 MtrunA17_Chr4g0013181 41.137 299 158 7 54 342 63 353 1.33e-61 200
Msa0197570 MtrunA17_Chr4g0074851 36.928 306 177 5 47 342 29 328 1.29e-60 197
Msa0197570 MtrunA17_Chr5g0421411 41.091 275 148 6 81 342 12 285 1.83e-60 195
Msa0197570 MtrunA17_Chr5g0432331 40.984 305 160 9 50 342 56 352 3.04e-60 197
Msa0197570 MtrunA17_Chr3g0107881 41.060 302 157 10 54 342 31 324 3.19e-60 196
Msa0197570 MtrunA17_Chr2g0311251 35.435 333 170 8 50 341 11 339 4.61e-60 196
Msa0197570 MtrunA17_Chr5g0413051 37.134 307 177 6 50 342 73 377 6.75e-60 197
Msa0197570 MtrunA17_Chr4g0075241 36.721 305 179 6 48 342 27 327 8.19e-59 192
Msa0197570 MtrunA17_Chr5g0432351 40.328 305 162 9 50 342 25 321 1.90e-58 191
Msa0197570 MtrunA17_Chr4g0053871 35.333 300 177 6 50 338 27 320 4.58e-58 190
Msa0197570 MtrunA17_Chr2g0279061 40.625 256 144 3 94 342 12 266 5.49e-58 188
Msa0197570 MtrunA17_Chr5g0432341 40.000 305 163 9 50 342 25 321 5.67e-57 187
Msa0197570 MtrunA17_Chr2g0329641 38.944 303 172 5 50 342 36 335 1.01e-56 187
Msa0197570 MtrunA17_Chr2g0311241 32.345 371 171 7 50 341 60 429 2.07e-56 189
Msa0197570 MtrunA17_Chr7g0225221 36.027 297 177 5 54 342 29 320 1.55e-55 184
Msa0197570 MtrunA17_Chr3g0136751 36.455 299 183 5 50 342 25 322 8.74e-49 166
Msa0197570 MtrunA17_Chr2g0316811 39.013 223 115 4 50 251 50 272 1.03e-45 159
Msa0197570 MtrunA17_Chr2g0292281 42.029 207 109 4 139 342 18 216 4.21e-44 152
Msa0197570 MtrunA17_Chr4g0004591 30.599 317 159 5 49 341 76 355 2.08e-40 145
Msa0197570 MtrunA17_Chr5g0432401 33.663 303 146 10 49 341 28 285 5.74e-37 134
Msa0197570 MtrunA17_Chr2g0316141 32.042 284 134 9 96 339 11 275 1.06e-35 130
Msa0197570 MtrunA17_Chr2g0316181 32.042 284 134 9 96 339 11 275 1.06e-35 130
Msa0197570 MtrunA17_Chr3g0114491 46.457 127 64 1 34 156 2 128 1.01e-32 119
Msa0197570 MtrunA17_Chr1g0181501 36.041 197 112 5 154 343 1 190 1.61e-28 109
Msa0197570 MtrunA17_Chr3g0114461 38.542 192 105 7 156 342 9 192 1.82e-28 109
Msa0197570 MtrunA17_Chr6g0468731 53.030 66 31 0 89 154 22 87 1.91e-19 82.0
Msa0197570 MtrunA17_Chr1g0181491 44.340 106 55 3 50 152 12 116 6.76e-19 82.4
Msa0197570 MtrunA17_Chr7g0254181 41.748 103 58 2 109 211 22 122 1.56e-18 81.6
Msa0197570 MtrunA17_Chr7g0254171 34.058 138 82 3 95 228 3 135 3.88e-16 74.3
Msa0197570 MtrunA17_Chr4g0013811 44.737 76 41 1 154 228 3 78 1.84e-14 67.8
Msa0197570 MtrunA17_Chr1g0196191 50.000 64 29 1 92 152 27 90 5.59e-14 68.9
Msa0197570 MtrunA17_Chr5g0432321 36.585 123 68 3 167 286 17 132 1.25e-13 67.4
Msa0197570 MtrunA17_Chr3g0104101 35.211 142 83 4 209 342 9 149 1.07e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197570 AT1G30870.1 60.667 300 116 2 46 343 47 346 4.26e-133 383
Msa0197570 AT3G03670.1 42.667 300 164 4 50 342 23 321 8.18e-88 267
Msa0197570 AT5G17820.1 41.638 293 168 3 50 342 24 313 1.04e-86 264
Msa0197570 AT5G17820.2 41.638 293 168 3 50 342 77 366 4.26e-85 261
Msa0197570 AT1G49570.1 45.033 302 154 6 50 340 48 348 1.32e-84 260
Msa0197570 AT2G18150.1 43.478 299 159 6 53 342 39 336 3.51e-82 253
Msa0197570 AT4G36430.1 44.333 300 157 7 53 343 33 331 4.51e-82 253
Msa0197570 AT1G05240.1 42.904 303 162 6 49 342 25 325 5.36e-82 252
Msa0197570 AT1G05250.1 42.904 303 162 6 49 342 25 325 5.36e-82 252
Msa0197570 AT5G15180.1 45.819 299 155 5 50 342 32 329 7.40e-81 249
Msa0197570 AT2G18140.1 42.994 314 160 7 47 342 23 335 9.07e-80 247
Msa0197570 AT2G41480.1 43.564 303 162 3 48 342 27 328 3.10e-79 245
Msa0197570 AT4G11290.1 44.590 305 154 7 50 342 25 326 5.47e-79 244
Msa0197570 AT5G64120.1 41.497 294 167 3 52 342 37 328 1.49e-78 244
Msa0197570 AT3G01190.1 45.485 299 154 6 50 342 26 321 2.35e-78 243
Msa0197570 AT1G05260.1 44.040 302 160 6 50 343 26 326 3.79e-78 243
Msa0197570 AT2G39040.1 43.791 306 158 6 50 342 46 350 1.79e-77 241
Msa0197570 AT2G38390.1 43.667 300 157 6 54 342 35 333 2.62e-77 241
Msa0197570 AT5G66390.1 43.624 298 158 6 54 342 37 333 6.16e-77 239
Msa0197570 AT3G21770.1 43.434 297 159 6 50 338 29 324 7.86e-77 239
Msa0197570 AT4G08770.1 43.137 306 161 7 50 343 24 328 1.93e-76 239
Msa0197570 AT4G16270.1 44.300 307 157 7 46 342 46 348 2.88e-75 236
Msa0197570 AT3G50990.1 42.384 302 164 6 50 342 41 341 3.43e-75 236
Msa0197570 AT4G08780.1 42.810 306 162 7 50 343 24 328 5.42e-75 235
Msa0197570 AT5G06720.1 39.667 300 170 5 54 343 36 334 6.36e-75 234
Msa0197570 AT5G19880.1 40.850 306 167 6 50 342 25 329 1.41e-74 233
Msa0197570 AT5G64100.1 41.497 294 166 5 53 342 40 331 1.49e-74 233
Msa0197570 AT5G06730.1 39.667 300 170 6 54 343 37 335 2.87e-74 234
Msa0197570 AT2G34060.1 44.371 302 156 5 50 339 42 343 4.74e-74 233
Msa0197570 AT2G38380.1 43.667 300 157 6 54 342 35 333 5.12e-74 233
Msa0197570 AT5G19890.1 41.528 301 165 4 50 342 30 327 1.06e-73 231
Msa0197570 AT3G49110.1 41.424 309 168 7 47 343 30 337 1.66e-72 229
Msa0197570 AT3G32980.1 42.715 302 160 6 54 343 35 335 2.74e-72 228
Msa0197570 AT3G49120.1 41.060 302 165 6 54 343 36 336 3.32e-72 228
Msa0197570 AT5G05340.1 38.944 303 167 5 50 342 30 324 1.56e-71 225
Msa0197570 AT4G33420.1 41.216 296 164 3 50 342 37 325 2.60e-71 225
Msa0197570 AT2G22420.1 41.751 297 161 6 54 342 27 319 5.02e-71 224
Msa0197570 AT4G33420.2 41.216 296 164 3 50 342 84 372 1.49e-70 224
Msa0197570 AT1G44970.1 42.475 299 161 6 54 342 49 346 1.54e-70 224
Msa0197570 AT5G39580.1 40.000 295 171 4 52 342 27 319 3.52e-70 222
Msa0197570 AT5G42180.1 36.416 346 182 6 3 341 2 316 2.01e-69 220
Msa0197570 AT1G71695.1 39.375 320 171 8 39 342 27 339 3.80e-69 220
Msa0197570 AT5G64110.1 40.741 297 166 5 53 342 37 330 5.87e-69 219
Msa0197570 AT1G68850.1 40.065 307 169 6 50 342 30 335 6.55e-69 219
Msa0197570 AT5G51890.1 40.000 300 162 5 54 342 30 322 3.68e-68 217
Msa0197570 AT4G30170.1 36.545 301 181 6 50 342 27 325 1.66e-67 215
Msa0197570 AT1G14550.1 42.295 305 155 8 50 342 26 321 5.57e-67 214
Msa0197570 AT2G18980.1 37.874 301 177 6 50 342 25 323 9.49e-67 213
Msa0197570 AT2G35380.1 41.447 304 163 8 53 342 33 335 3.67e-66 212
Msa0197570 AT4G25980.1 39.735 302 172 4 50 342 26 326 1.28e-65 210
Msa0197570 AT2G24800.1 41.528 301 166 5 50 342 31 329 1.79e-65 210
Msa0197570 AT5G22410.1 38.851 296 172 5 50 338 28 321 3.32e-65 209
Msa0197570 AT4G17690.1 37.124 299 172 6 54 342 30 322 4.37e-65 209
Msa0197570 AT1G77100.1 39.604 303 166 7 50 342 24 319 9.32e-65 208
Msa0197570 AT3G49960.1 36.184 304 182 5 50 342 27 329 1.75e-64 207
Msa0197570 AT5G40150.1 38.284 303 171 6 50 342 32 328 5.04e-64 206
Msa0197570 AT4G26010.1 37.919 298 170 6 50 342 22 309 1.23e-63 205
Msa0197570 AT5G47000.1 37.582 306 172 7 49 342 32 330 2.05e-63 205
Msa0197570 AT4G26010.2 37.919 298 170 6 50 342 50 337 2.32e-63 205
Msa0197570 AT4G31760.1 39.404 302 170 5 50 342 29 326 2.86e-63 204
Msa0197570 AT3G28200.1 37.624 303 172 6 50 342 21 316 4.06e-63 204
Msa0197570 AT1G14540.1 39.073 302 168 7 50 342 21 315 5.87e-63 203
Msa0197570 AT5G58390.1 38.851 296 162 5 54 338 25 312 7.66e-63 203
Msa0197570 AT5G24070.1 37.171 304 179 4 50 343 35 336 1.35e-62 203
Msa0197570 AT5G14130.1 37.000 300 181 5 50 342 32 330 1.37e-62 202
Msa0197570 AT5G14130.2 37.000 300 181 5 50 342 73 371 7.62e-62 202
Msa0197570 AT5G58400.1 36.061 330 191 6 25 342 4 325 1.87e-61 199
Msa0197570 AT2G37130.1 38.158 304 171 6 50 342 30 327 2.25e-61 199
Msa0197570 AT2G37130.2 38.079 302 170 6 52 342 1 296 4.15e-61 197
Msa0197570 AT2G43480.1 35.604 323 190 5 30 342 21 335 1.53e-60 197
Msa0197570 AT4G33870.1 31.781 365 199 7 17 339 42 398 5.25e-60 198
Msa0197570 AT4G37530.1 34.333 300 185 5 54 342 31 329 1.89e-59 194
Msa0197570 AT5G67400.1 34.375 320 197 6 34 342 12 329 2.27e-59 194
Msa0197570 AT4G37520.1 34.539 304 187 6 50 342 27 329 2.50e-59 194
Msa0197570 AT4G37520.2 34.539 304 184 7 50 342 27 326 2.76e-58 191
Msa0197570 AT4G21960.1 36.246 309 181 5 44 342 25 327 8.70e-58 190
Msa0197570 AT1G34510.1 38.255 298 169 6 50 342 22 309 2.42e-57 188
Msa0197570 AT1G24110.1 39.542 306 171 7 50 344 22 324 4.42e-57 188
Msa0197570 AT3G17070.1 36.482 307 176 7 50 342 38 339 9.87e-56 185
Msa0197570 AT4G37530.2 34.127 252 155 4 54 294 31 282 3.19e-50 169
Msa0197570 AT2G35380.2 40.506 237 130 6 116 342 12 247 1.88e-46 158
Msa0197570 AT2G24800.2 45.679 162 87 1 50 210 31 192 8.12e-42 146
Msa0197570 AT4G25980.2 45.732 164 88 1 50 212 71 234 1.19e-41 147
Msa0197570 AT5G39580.2 41.071 168 99 0 52 219 27 194 1.07e-40 143
Msa0197570 AT3G17070.2 34.483 261 152 7 96 342 21 276 1.39e-38 139

Find 66 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAGAAGTTAAGGTATTT+TGG 0.131323 2_1:+15746375 None:intergenic
CCTCCGATTGTTGCTTCTTT+TGG 0.213392 2_1:-15747814 Msa0197570:CDS
ACTTCCATGATTGCTCTGTT+AGG 0.266056 2_1:-15747566 Msa0197570:CDS
TGAAGTTATTGATGATATTA+AGG 0.280197 2_1:-15746898 Msa0197570:CDS
CCATATTGGTCAGTCCCTTA+TGG 0.281860 2_1:-15746786 Msa0197570:CDS
GGTGTCATTGATGTTCTTAC+TGG 0.290141 2_1:-15746135 Msa0197570:CDS
AACATTAGAGGATACAGATT+TGG 0.336587 2_1:-15747712 Msa0197570:CDS
TATTCAGGGGCACATACTAT+TGG 0.363846 2_1:-15746474 Msa0197570:intron
TCTTGCAAAGAAAATGTAGA+TGG 0.363928 2_1:-15746359 Msa0197570:CDS
TTGGATAATCTCTTATCCTT+TGG 0.369990 2_1:-15747693 Msa0197570:CDS
TCTACAAGTCCCAACATTAG+AGG 0.388107 2_1:-15747724 Msa0197570:CDS
GCTGTTTCAATGTCAAAGTT+TGG 0.390316 2_1:-15746156 Msa0197570:CDS
TTTCCATCTTTCCTCCCATA+AGG 0.401746 2_1:+15746771 None:intergenic
TTCCATCTTTCCTCCCATAA+GGG 0.402901 2_1:+15746772 None:intergenic
TTTGGATCTAATGATGGGTC+TGG 0.404975 2_1:+15746393 None:intergenic
CTTGACTTAGTTGTTCTCTC+AGG 0.406767 2_1:-15746654 Msa0197570:intron
CATATTGGTCAGTCCCTTAT+GGG 0.409021 2_1:-15746785 Msa0197570:CDS
AGCATTGACAAAATTGCAAT+TGG 0.413153 2_1:+15746089 None:intergenic
GTCAAGGACAGTCAAGCCTT+TGG 0.419581 2_1:+15746671 None:intergenic
TATTGACAAAGAAGCTGAAA+TGG 0.421889 2_1:-15746742 Msa0197570:CDS
ATATTCTTACAACTGCTTCA+AGG 0.425738 2_1:-15746833 Msa0197570:CDS
GAAACAAGTGGAGAAGTTCT+TGG 0.427170 2_1:+15746219 None:intergenic
CTTCCATGATTGCTCTGTTA+GGG 0.430268 2_1:-15747565 Msa0197570:intron
CCATAAGGGACTGACCAATA+TGG 0.445922 2_1:+15746786 None:intergenic
TTCTCCACTTGTTTCAGCAT+TGG 0.449242 2_1:-15746211 Msa0197570:CDS
GGTCTGGTTTGCCTGTTCCT+TGG 0.453569 2_1:+15746409 None:intergenic
CCACCCTAACAGAGCAATCA+TGG 0.454699 2_1:+15747562 None:intergenic
CTTGTGGCTCTATTCAATAC+AGG 0.457006 2_1:-15746443 Msa0197570:CDS
AGGGATGCCACTGTTGAGTT+GGG 0.457543 2_1:-15746813 Msa0197570:CDS
GTCCCTTATGGGAGGAAAGA+TGG 0.458270 2_1:-15746774 Msa0197570:CDS
AAATCTGTATCCTCTAATGT+TGG 0.458659 2_1:+15747714 None:intergenic
TTTGACTTTGCTATGCAAGA+TGG 0.467791 2_1:+15747638 None:intergenic
TGCATAGCAAAGTCAAAGAA+TGG 0.476889 2_1:-15747632 Msa0197570:CDS
AAGGGATGCCACTGTTGAGT+TGG 0.488094 2_1:-15746814 Msa0197570:CDS
AATCTGTATCCTCTAATGTT+GGG 0.489759 2_1:+15747715 None:intergenic
TGCAAGATGGATTCAAATTG+AGG 0.491467 2_1:+15747651 None:intergenic
TTGAGTTGGGTGGACCATAT+TGG 0.502726 2_1:-15746800 Msa0197570:CDS
AATCATGGAAGTGCAACCTT+AGG 0.505171 2_1:+15747577 None:intergenic
TTATACAACTACCAAGGAAC+AGG 0.505330 2_1:-15746420 Msa0197570:CDS
TATTCTTACAACTGCTTCAA+GGG 0.505713 2_1:-15746832 Msa0197570:CDS
CTTTAGCAGCTAGTCTCCTA+AGG 0.506408 2_1:-15747593 Msa0197570:CDS
AGAAGCTGAAATGGTACCAA+TGG 0.515929 2_1:-15746733 Msa0197570:CDS
GGATTGAAAATATTCGATCA+AGG 0.518413 2_1:+15746692 None:intergenic
GAGATGATGAAGGAGAAATC+AGG 0.533880 2_1:-15746113 Msa0197570:CDS
GAAGCTGAAATGGTACCAAT+GGG 0.535263 2_1:-15746732 Msa0197570:CDS
GAACCAAAAGAAGCAACAAT+CGG 0.537109 2_1:+15747811 None:intergenic
GCAAGATGGATTCAAATTGA+GGG 0.538287 2_1:+15747652 None:intergenic
ACCTTATGATGAAAACTATG+AGG 0.539825 2_1:-15747760 Msa0197570:CDS
TAGATGGGCCACAGAATATG+TGG 0.542434 2_1:-15746343 Msa0197570:CDS
AGTCAAAGAATGGATTAAGA+AGG 0.547241 2_1:-15747622 Msa0197570:CDS
GTAATGTTCTCATGGCCCAT+TGG 0.578787 2_1:+15746717 None:intergenic
TCAAGGAAGTAATGTTCTCA+TGG 0.582299 2_1:+15746709 None:intergenic
CTTGCAAAGAAAATGTAGAT+GGG 0.598148 2_1:-15746358 Msa0197570:CDS
CAAGTAAGCAAGACATTGAG+AGG 0.601262 2_1:-15746924 Msa0197570:CDS
TGAATCATGAAGGAAGTGAA+AGG 0.602756 2_1:-15746953 Msa0197570:CDS
GTTCTTACTGGAGATGATGA+AGG 0.609230 2_1:-15746123 Msa0197570:CDS
CAGGGGCACATACTATTGGA+AGG 0.617965 2_1:-15746470 Msa0197570:CDS
CTGAGAGAACAACTAAGTCA+AGG 0.638471 2_1:+15746655 None:intergenic
ATCAAGATCCACATATTCTG+TGG 0.652227 2_1:+15746335 None:intergenic
ACTATTGGAAGGACTACTTG+TGG 0.665121 2_1:-15746459 Msa0197570:CDS
CCAAAAGAAGCAACAATCGG+AGG 0.665472 2_1:+15747814 None:intergenic
GATGCCACTGTTGAGTTGGG+TGG 0.668142 2_1:-15746810 Msa0197570:CDS
GTGGCCAATGCTGAAACAAG+TGG 0.669223 2_1:+15746207 None:intergenic
ATTGGTCAGTCCCTTATGGG+AGG 0.681509 2_1:-15746782 Msa0197570:CDS
TACAGGTTATACAACTACCA+AGG 0.683064 2_1:-15746426 Msa0197570:CDS
TGGTCCACCCAACTCAACAG+TGG 0.695362 2_1:+15746806 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAGTAAAAAATGAATA+TGG + chr2_1:15746884-15746903 None:intergenic 10.0%
!! ATATTAATATAGAAAACAAT+TGG + chr2_1:15747420-15747439 None:intergenic 10.0%
!! TATATAGTAAAAAATGAATA+TGG + chr2_1:15746884-15746903 None:intergenic 10.0%
!! ATATTAATATAGAAAACAAT+TGG + chr2_1:15747420-15747439 None:intergenic 10.0%
!!! ATATACTTATTTGAACTTTT+TGG - chr2_1:15746899-15746918 Msa0197570:CDS 15.0%
!!! TGTTTTCTATATTAATATTC+AGG - chr2_1:15747422-15747441 Msa0197570:intron 15.0%
!!! GTTTTCTATATTAATATTCA+GGG - chr2_1:15747423-15747442 Msa0197570:intron 15.0%
!!! TTTTCTATATTAATATTCAG+GGG - chr2_1:15747424-15747443 Msa0197570:intron 15.0%
!! ATAAATCTCAAAAAGAAAAT+GGG - chr2_1:15747635-15747654 Msa0197570:CDS 15.0%
!!! ATATACTTATTTGAACTTTT+TGG - chr2_1:15746899-15746918 Msa0197570:CDS 15.0%
!!! TGTTTTCTATATTAATATTC+AGG - chr2_1:15747422-15747441 Msa0197570:intron 15.0%
!!! GTTTTCTATATTAATATTCA+GGG - chr2_1:15747423-15747442 Msa0197570:intron 15.0%
!!! TTTTCTATATTAATATTCAG+GGG - chr2_1:15747424-15747443 Msa0197570:intron 15.0%
!! ATAAATCTCAAAAAGAAAAT+GGG - chr2_1:15747635-15747654 Msa0197570:CDS 15.0%
!! ATGCAAAACATATAAATACA+CGG + chr2_1:15746583-15746602 None:intergenic 20.0%
!!! ATGTTTTGCATTATTTTTCA+TGG - chr2_1:15746592-15746611 Msa0197570:intron 20.0%
!!! TTCAATTTTCAACAAAATCA+CGG - chr2_1:15746786-15746805 Msa0197570:CDS 20.0%
!! TATTAGATTAAGTGCATATT+TGG + chr2_1:15746823-15746842 None:intergenic 20.0%
!!! ACAATAGATTCATAATTTGT+AGG - chr2_1:15746855-15746874 Msa0197570:CDS 20.0%
!!! TTTTTGGCTGTATTTTTAAA+GGG - chr2_1:15746915-15746934 Msa0197570:CDS 20.0%
!!! TCTATTTTATTGAATCATGA+AGG - chr2_1:15746948-15746967 Msa0197570:CDS 20.0%
!!! TGAAGTTATTGATGATATTA+AGG - chr2_1:15747013-15747032 Msa0197570:intron 20.0%
!!! TACATTCTGTCAAATTTTTT+TGG + chr2_1:15747611-15747630 None:intergenic 20.0%
!! CATAAATCTCAAAAAGAAAA+TGG - chr2_1:15747634-15747653 Msa0197570:CDS 20.0%
!! ATGCAAAACATATAAATACA+CGG + chr2_1:15746583-15746602 None:intergenic 20.0%
!!! ATGTTTTGCATTATTTTTCA+TGG - chr2_1:15746592-15746611 Msa0197570:intron 20.0%
!!! TTCAATTTTCAACAAAATCA+CGG - chr2_1:15746786-15746805 Msa0197570:CDS 20.0%
!! TATTAGATTAAGTGCATATT+TGG + chr2_1:15746823-15746842 None:intergenic 20.0%
!!! ACAATAGATTCATAATTTGT+AGG - chr2_1:15746855-15746874 Msa0197570:CDS 20.0%
!!! TTTTTGGCTGTATTTTTAAA+GGG - chr2_1:15746915-15746934 Msa0197570:CDS 20.0%
!!! TCTATTTTATTGAATCATGA+AGG - chr2_1:15746948-15746967 Msa0197570:CDS 20.0%
!!! TGAAGTTATTGATGATATTA+AGG - chr2_1:15747013-15747032 Msa0197570:intron 20.0%
!!! TACATTCTGTCAAATTTTTT+TGG + chr2_1:15747611-15747630 None:intergenic 20.0%
!! CATAAATCTCAAAAAGAAAA+TGG - chr2_1:15747634-15747653 Msa0197570:CDS 20.0%
!! ATAGTTTTCATCATAAGGTT+GGG + chr2_1:15746150-15746169 None:intergenic 25.0%
! AGATATCATCTCATCAAAAT+CGG + chr2_1:15746443-15746462 None:intergenic 25.0%
! ACATATAAATACACGGATAA+TGG + chr2_1:15746576-15746595 None:intergenic 25.0%
!!! TGCATTATTTTTCATGGATT+TGG - chr2_1:15746598-15746617 Msa0197570:intron 25.0%
!! TTCATGTTTGGTAATTTGAT+TGG + chr2_1:15746671-15746690 None:intergenic 25.0%
!!! CTTTTTGGCTGTATTTTTAA+AGG - chr2_1:15746914-15746933 Msa0197570:CDS 25.0%
!! ATCGAATATTTTCAATCCAA+AGG - chr2_1:15747224-15747243 Msa0197570:intron 25.0%
! AAAGATATGGACCAATTTAA+TGG - chr2_1:15747386-15747405 Msa0197570:intron 25.0%
! TGGTTAGTAAACCATTAAAT+TGG + chr2_1:15747400-15747419 None:intergenic 25.0%
!! ATTTTCTTTGCAAGAAGTTA+AGG + chr2_1:15747547-15747566 None:intergenic 25.0%
! AATTGATGTTCAAAAACAGA+TGG + chr2_1:15747734-15747753 None:intergenic 25.0%
!! ATAGTTTTCATCATAAGGTT+GGG + chr2_1:15746150-15746169 None:intergenic 25.0%
! AGATATCATCTCATCAAAAT+CGG + chr2_1:15746443-15746462 None:intergenic 25.0%
! ACATATAAATACACGGATAA+TGG + chr2_1:15746576-15746595 None:intergenic 25.0%
!!! TGCATTATTTTTCATGGATT+TGG - chr2_1:15746598-15746617 Msa0197570:intron 25.0%
!! TTCATGTTTGGTAATTTGAT+TGG + chr2_1:15746671-15746690 None:intergenic 25.0%
!!! CTTTTTGGCTGTATTTTTAA+AGG - chr2_1:15746914-15746933 Msa0197570:CDS 25.0%
!! ATCGAATATTTTCAATCCAA+AGG - chr2_1:15747224-15747243 Msa0197570:intron 25.0%
! AAAGATATGGACCAATTTAA+TGG - chr2_1:15747386-15747405 Msa0197570:intron 25.0%
! TGGTTAGTAAACCATTAAAT+TGG + chr2_1:15747400-15747419 None:intergenic 25.0%
!! ATTTTCTTTGCAAGAAGTTA+AGG + chr2_1:15747547-15747566 None:intergenic 25.0%
! AATTGATGTTCAAAAACAGA+TGG + chr2_1:15747734-15747753 None:intergenic 25.0%
! CATAGTTTTCATCATAAGGT+TGG + chr2_1:15746151-15746170 None:intergenic 30.0%
ACCTTATGATGAAAACTATG+AGG - chr2_1:15746151-15746170 Msa0197570:CDS 30.0%
! TCCTCATAGTTTTCATCATA+AGG + chr2_1:15746155-15746174 None:intergenic 30.0%
AATCTGTATCCTCTAATGTT+GGG + chr2_1:15746199-15746218 None:intergenic 30.0%
AAATCTGTATCCTCTAATGT+TGG + chr2_1:15746200-15746219 None:intergenic 30.0%
AACATTAGAGGATACAGATT+TGG - chr2_1:15746199-15746218 Msa0197570:CDS 30.0%
TTGGATAATCTCTTATCCTT+TGG - chr2_1:15746218-15746237 Msa0197570:CDS 30.0%
!! AGTCAAAGAATGGATTAAGA+AGG - chr2_1:15746289-15746308 Msa0197570:CDS 30.0%
TTTGGATTTCCTATAGTAGT+CGG - chr2_1:15746616-15746635 Msa0197570:intron 30.0%
CAAACATACACTAGAGTAAA+TGG + chr2_1:15746701-15746720 None:intergenic 30.0%
CATTTACTCTAGTGTATGTT+TGG - chr2_1:15746699-15746718 Msa0197570:CDS 30.0%
! ATTTTCAACAAAATCACGGT+CGG - chr2_1:15746790-15746809 Msa0197570:CDS 30.0%
!! GTATTTTTAAAGGGATGTGA+TGG - chr2_1:15746924-15746943 Msa0197570:CDS 30.0%
ATATTCTTACAACTGCTTCA+AGG - chr2_1:15747078-15747097 Msa0197570:intron 30.0%
TATTCTTACAACTGCTTCAA+GGG - chr2_1:15747079-15747098 Msa0197570:intron 30.0%
TATTGACAAAGAAGCTGAAA+TGG - chr2_1:15747169-15747188 Msa0197570:intron 30.0%
GGATTGAAAATATTCGATCA+AGG + chr2_1:15747222-15747241 None:intergenic 30.0%
GAGAATGACTTACAAAGATA+TGG - chr2_1:15747373-15747392 Msa0197570:intron 30.0%
!! GGTATTTTGGATCTAATGAT+GGG + chr2_1:15747526-15747545 None:intergenic 30.0%
!! AGGTATTTTGGATCTAATGA+TGG + chr2_1:15747527-15747546 None:intergenic 30.0%
!! TGCAAGAAGTTAAGGTATTT+TGG + chr2_1:15747539-15747558 None:intergenic 30.0%
TCTTGCAAAGAAAATGTAGA+TGG - chr2_1:15747552-15747571 Msa0197570:intron 30.0%
CTTGCAAAGAAAATGTAGAT+GGG - chr2_1:15747553-15747572 Msa0197570:intron 30.0%
!! AGCATTGACAAAATTGCAAT+TGG + chr2_1:15747825-15747844 None:intergenic 30.0%
! CATAGTTTTCATCATAAGGT+TGG + chr2_1:15746151-15746170 None:intergenic 30.0%
ACCTTATGATGAAAACTATG+AGG - chr2_1:15746151-15746170 Msa0197570:CDS 30.0%
! TCCTCATAGTTTTCATCATA+AGG + chr2_1:15746155-15746174 None:intergenic 30.0%
AATCTGTATCCTCTAATGTT+GGG + chr2_1:15746199-15746218 None:intergenic 30.0%
AAATCTGTATCCTCTAATGT+TGG + chr2_1:15746200-15746219 None:intergenic 30.0%
AACATTAGAGGATACAGATT+TGG - chr2_1:15746199-15746218 Msa0197570:CDS 30.0%
TTGGATAATCTCTTATCCTT+TGG - chr2_1:15746218-15746237 Msa0197570:CDS 30.0%
!! AGTCAAAGAATGGATTAAGA+AGG - chr2_1:15746289-15746308 Msa0197570:CDS 30.0%
TTTGGATTTCCTATAGTAGT+CGG - chr2_1:15746616-15746635 Msa0197570:intron 30.0%
CAAACATACACTAGAGTAAA+TGG + chr2_1:15746701-15746720 None:intergenic 30.0%
CATTTACTCTAGTGTATGTT+TGG - chr2_1:15746699-15746718 Msa0197570:CDS 30.0%
! ATTTTCAACAAAATCACGGT+CGG - chr2_1:15746790-15746809 Msa0197570:CDS 30.0%
!! GTATTTTTAAAGGGATGTGA+TGG - chr2_1:15746924-15746943 Msa0197570:CDS 30.0%
ATATTCTTACAACTGCTTCA+AGG - chr2_1:15747078-15747097 Msa0197570:intron 30.0%
TATTCTTACAACTGCTTCAA+GGG - chr2_1:15747079-15747098 Msa0197570:intron 30.0%
TATTGACAAAGAAGCTGAAA+TGG - chr2_1:15747169-15747188 Msa0197570:intron 30.0%
GGATTGAAAATATTCGATCA+AGG + chr2_1:15747222-15747241 None:intergenic 30.0%
GAGAATGACTTACAAAGATA+TGG - chr2_1:15747373-15747392 Msa0197570:intron 30.0%
!! GGTATTTTGGATCTAATGAT+GGG + chr2_1:15747526-15747545 None:intergenic 30.0%
!! AGGTATTTTGGATCTAATGA+TGG + chr2_1:15747527-15747546 None:intergenic 30.0%
!! TGCAAGAAGTTAAGGTATTT+TGG + chr2_1:15747539-15747558 None:intergenic 30.0%
TCTTGCAAAGAAAATGTAGA+TGG - chr2_1:15747552-15747571 Msa0197570:intron 30.0%
CTTGCAAAGAAAATGTAGAT+GGG - chr2_1:15747553-15747572 Msa0197570:intron 30.0%
!! AGCATTGACAAAATTGCAAT+TGG + chr2_1:15747825-15747844 None:intergenic 30.0%
GAACCAAAAGAAGCAACAAT+CGG + chr2_1:15746103-15746122 None:intergenic 35.0%
! GCAAGATGGATTCAAATTGA+GGG + chr2_1:15746262-15746281 None:intergenic 35.0%
! TGCAAGATGGATTCAAATTG+AGG + chr2_1:15746263-15746282 None:intergenic 35.0%
! TTTGACTTTGCTATGCAAGA+TGG + chr2_1:15746276-15746295 None:intergenic 35.0%
TGCATAGCAAAGTCAAAGAA+TGG - chr2_1:15746279-15746298 Msa0197570:CDS 35.0%
TTGGATTTCCTATAGTAGTC+GGG - chr2_1:15746617-15746636 Msa0197570:intron 35.0%
AATGGTCTAGACTTCATGTT+TGG + chr2_1:15746683-15746702 None:intergenic 35.0%
TCTAGTGTATGTTTGGATTG+TGG - chr2_1:15746706-15746725 Msa0197570:CDS 35.0%
TGTTTGGATTGTGGTAAGTT+TGG - chr2_1:15746715-15746734 Msa0197570:CDS 35.0%
TGAATCATGAAGGAAGTGAA+AGG - chr2_1:15746958-15746977 Msa0197570:CDS 35.0%
TCAAGGAAGTAATGTTCTCA+TGG + chr2_1:15747205-15747224 None:intergenic 35.0%
TACAGGTTATACAACTACCA+AGG - chr2_1:15747485-15747504 Msa0197570:intron 35.0%
TTATACAACTACCAAGGAAC+AGG - chr2_1:15747491-15747510 Msa0197570:intron 35.0%
ATCAAGATCCACATATTCTG+TGG + chr2_1:15747579-15747598 None:intergenic 35.0%
! TTCAAAAACAGATGGTGTTG+TGG + chr2_1:15747726-15747745 None:intergenic 35.0%
! GCTGTTTCAATGTCAAAGTT+TGG - chr2_1:15747755-15747774 Msa0197570:CDS 35.0%
GAACCAAAAGAAGCAACAAT+CGG + chr2_1:15746103-15746122 None:intergenic 35.0%
! GCAAGATGGATTCAAATTGA+GGG + chr2_1:15746262-15746281 None:intergenic 35.0%
! TGCAAGATGGATTCAAATTG+AGG + chr2_1:15746263-15746282 None:intergenic 35.0%
! TTTGACTTTGCTATGCAAGA+TGG + chr2_1:15746276-15746295 None:intergenic 35.0%
TGCATAGCAAAGTCAAAGAA+TGG - chr2_1:15746279-15746298 Msa0197570:CDS 35.0%
TTGGATTTCCTATAGTAGTC+GGG - chr2_1:15746617-15746636 Msa0197570:intron 35.0%
AATGGTCTAGACTTCATGTT+TGG + chr2_1:15746683-15746702 None:intergenic 35.0%
TCTAGTGTATGTTTGGATTG+TGG - chr2_1:15746706-15746725 Msa0197570:CDS 35.0%
TGTTTGGATTGTGGTAAGTT+TGG - chr2_1:15746715-15746734 Msa0197570:CDS 35.0%
TGAATCATGAAGGAAGTGAA+AGG - chr2_1:15746958-15746977 Msa0197570:CDS 35.0%
TCAAGGAAGTAATGTTCTCA+TGG + chr2_1:15747205-15747224 None:intergenic 35.0%
TACAGGTTATACAACTACCA+AGG - chr2_1:15747485-15747504 Msa0197570:intron 35.0%
TTATACAACTACCAAGGAAC+AGG - chr2_1:15747491-15747510 Msa0197570:intron 35.0%
ATCAAGATCCACATATTCTG+TGG + chr2_1:15747579-15747598 None:intergenic 35.0%
! TTCAAAAACAGATGGTGTTG+TGG + chr2_1:15747726-15747745 None:intergenic 35.0%
! GCTGTTTCAATGTCAAAGTT+TGG - chr2_1:15747755-15747774 Msa0197570:CDS 35.0%
TCTACAAGTCCCAACATTAG+AGG - chr2_1:15746187-15746206 Msa0197570:CDS 40.0%
! GCTTTTACGGTAGTAACCAA+AGG + chr2_1:15746237-15746256 None:intergenic 40.0%
! CAAATTGAGGGCAGCTTTTA+CGG + chr2_1:15746250-15746269 None:intergenic 40.0%
! AATCATGGAAGTGCAACCTT+AGG + chr2_1:15746337-15746356 None:intergenic 40.0%
ACTTCCATGATTGCTCTGTT+AGG - chr2_1:15746345-15746364 Msa0197570:CDS 40.0%
CTTCCATGATTGCTCTGTTA+GGG - chr2_1:15746346-15746365 Msa0197570:CDS 40.0%
! AACACTGATTGCTAGACTAC+AGG + chr2_1:15746646-15746665 None:intergenic 40.0%
CAAGTAAGCAAGACATTGAG+AGG - chr2_1:15746987-15747006 Msa0197570:intron 40.0%
! TCAGCACAAGAGACTGTTTT+AGG + chr2_1:15747059-15747078 None:intergenic 40.0%
CATATTGGTCAGTCCCTTAT+GGG - chr2_1:15747126-15747145 Msa0197570:intron 40.0%
TTCCATCTTTCCTCCCATAA+GGG + chr2_1:15747142-15747161 None:intergenic 40.0%
TTTCCATCTTTCCTCCCATA+AGG + chr2_1:15747143-15747162 None:intergenic 40.0%
AGAAGCTGAAATGGTACCAA+TGG - chr2_1:15747178-15747197 Msa0197570:intron 40.0%
GAAGCTGAAATGGTACCAAT+GGG - chr2_1:15747179-15747198 Msa0197570:intron 40.0%
CTGAGAGAACAACTAAGTCA+AGG + chr2_1:15747259-15747278 None:intergenic 40.0%
CTTGACTTAGTTGTTCTCTC+AGG - chr2_1:15747257-15747276 Msa0197570:intron 40.0%
! TATTCAGGGGCACATACTAT+TGG - chr2_1:15747437-15747456 Msa0197570:intron 40.0%
ACTATTGGAAGGACTACTTG+TGG - chr2_1:15747452-15747471 Msa0197570:intron 40.0%
! CTTGTGGCTCTATTCAATAC+AGG - chr2_1:15747468-15747487 Msa0197570:intron 40.0%
!! TTTGGATCTAATGATGGGTC+TGG + chr2_1:15747521-15747540 None:intergenic 40.0%
GAAACAAGTGGAGAAGTTCT+TGG + chr2_1:15747695-15747714 None:intergenic 40.0%
TTCTCCACTTGTTTCAGCAT+TGG - chr2_1:15747700-15747719 Msa0197570:CDS 40.0%
!! GGTGTCATTGATGTTCTTAC+TGG - chr2_1:15747776-15747795 Msa0197570:CDS 40.0%
GTTCTTACTGGAGATGATGA+AGG - chr2_1:15747788-15747807 Msa0197570:CDS 40.0%
GAGATGATGAAGGAGAAATC+AGG - chr2_1:15747798-15747817 Msa0197570:CDS 40.0%
TCTACAAGTCCCAACATTAG+AGG - chr2_1:15746187-15746206 Msa0197570:CDS 40.0%
! GCTTTTACGGTAGTAACCAA+AGG + chr2_1:15746237-15746256 None:intergenic 40.0%
! CAAATTGAGGGCAGCTTTTA+CGG + chr2_1:15746250-15746269 None:intergenic 40.0%
! AATCATGGAAGTGCAACCTT+AGG + chr2_1:15746337-15746356 None:intergenic 40.0%
ACTTCCATGATTGCTCTGTT+AGG - chr2_1:15746345-15746364 Msa0197570:CDS 40.0%
CTTCCATGATTGCTCTGTTA+GGG - chr2_1:15746346-15746365 Msa0197570:CDS 40.0%
! AACACTGATTGCTAGACTAC+AGG + chr2_1:15746646-15746665 None:intergenic 40.0%
CAAGTAAGCAAGACATTGAG+AGG - chr2_1:15746987-15747006 Msa0197570:intron 40.0%
! TCAGCACAAGAGACTGTTTT+AGG + chr2_1:15747059-15747078 None:intergenic 40.0%
CATATTGGTCAGTCCCTTAT+GGG - chr2_1:15747126-15747145 Msa0197570:intron 40.0%
TTCCATCTTTCCTCCCATAA+GGG + chr2_1:15747142-15747161 None:intergenic 40.0%
TTTCCATCTTTCCTCCCATA+AGG + chr2_1:15747143-15747162 None:intergenic 40.0%
AGAAGCTGAAATGGTACCAA+TGG - chr2_1:15747178-15747197 Msa0197570:intron 40.0%
GAAGCTGAAATGGTACCAAT+GGG - chr2_1:15747179-15747198 Msa0197570:intron 40.0%
CTGAGAGAACAACTAAGTCA+AGG + chr2_1:15747259-15747278 None:intergenic 40.0%
CTTGACTTAGTTGTTCTCTC+AGG - chr2_1:15747257-15747276 Msa0197570:intron 40.0%
! TATTCAGGGGCACATACTAT+TGG - chr2_1:15747437-15747456 Msa0197570:intron 40.0%
ACTATTGGAAGGACTACTTG+TGG - chr2_1:15747452-15747471 Msa0197570:intron 40.0%
! CTTGTGGCTCTATTCAATAC+AGG - chr2_1:15747468-15747487 Msa0197570:intron 40.0%
!! TTTGGATCTAATGATGGGTC+TGG + chr2_1:15747521-15747540 None:intergenic 40.0%
GAAACAAGTGGAGAAGTTCT+TGG + chr2_1:15747695-15747714 None:intergenic 40.0%
TTCTCCACTTGTTTCAGCAT+TGG - chr2_1:15747700-15747719 Msa0197570:CDS 40.0%
!! GGTGTCATTGATGTTCTTAC+TGG - chr2_1:15747776-15747795 Msa0197570:CDS 40.0%
GTTCTTACTGGAGATGATGA+AGG - chr2_1:15747788-15747807 Msa0197570:CDS 40.0%
GAGATGATGAAGGAGAAATC+AGG - chr2_1:15747798-15747817 Msa0197570:CDS 40.0%
CCAAAAGAAGCAACAATCGG+AGG + chr2_1:15746100-15746119 None:intergenic 45.0%
!! CCTCCGATTGTTGCTTCTTT+TGG - chr2_1:15746097-15746116 Msa0197570:CDS 45.0%
! CTTTAGCAGCTAGTCTCCTA+AGG - chr2_1:15746318-15746337 Msa0197570:CDS 45.0%
CATGATTGCTCTGTTAGGGT+GGG - chr2_1:15746350-15746369 Msa0197570:CDS 45.0%
ACAGGATTCCCGACTACTAT+AGG + chr2_1:15746628-15746647 None:intergenic 45.0%
!! TTGAGTTGGGTGGACCATAT+TGG - chr2_1:15747111-15747130 Msa0197570:intron 45.0%
CCATAAGGGACTGACCAATA+TGG + chr2_1:15747128-15747147 None:intergenic 45.0%
CCATATTGGTCAGTCCCTTA+TGG - chr2_1:15747125-15747144 Msa0197570:intron 45.0%
GTAATGTTCTCATGGCCCAT+TGG + chr2_1:15747197-15747216 None:intergenic 45.0%
TAGATGGGCCACAGAATATG+TGG - chr2_1:15747568-15747587 Msa0197570:CDS 45.0%
CCAAAAGAAGCAACAATCGG+AGG + chr2_1:15746100-15746119 None:intergenic 45.0%
!! CCTCCGATTGTTGCTTCTTT+TGG - chr2_1:15746097-15746116 Msa0197570:CDS 45.0%
! CTTTAGCAGCTAGTCTCCTA+AGG - chr2_1:15746318-15746337 Msa0197570:CDS 45.0%
CATGATTGCTCTGTTAGGGT+GGG - chr2_1:15746350-15746369 Msa0197570:CDS 45.0%
ACAGGATTCCCGACTACTAT+AGG + chr2_1:15746628-15746647 None:intergenic 45.0%
!! TTGAGTTGGGTGGACCATAT+TGG - chr2_1:15747111-15747130 Msa0197570:intron 45.0%
CCATAAGGGACTGACCAATA+TGG + chr2_1:15747128-15747147 None:intergenic 45.0%
CCATATTGGTCAGTCCCTTA+TGG - chr2_1:15747125-15747144 Msa0197570:intron 45.0%
GTAATGTTCTCATGGCCCAT+TGG + chr2_1:15747197-15747216 None:intergenic 45.0%
TAGATGGGCCACAGAATATG+TGG - chr2_1:15747568-15747587 Msa0197570:CDS 45.0%
CCACCCTAACAGAGCAATCA+TGG + chr2_1:15746352-15746371 None:intergenic 50.0%
CCATGATTGCTCTGTTAGGG+TGG - chr2_1:15746349-15746368 Msa0197570:CDS 50.0%
AAGGGATGCCACTGTTGAGT+TGG - chr2_1:15747097-15747116 Msa0197570:intron 50.0%
AGGGATGCCACTGTTGAGTT+GGG - chr2_1:15747098-15747117 Msa0197570:intron 50.0%
ATTGGTCAGTCCCTTATGGG+AGG - chr2_1:15747129-15747148 Msa0197570:intron 50.0%
GTCCCTTATGGGAGGAAAGA+TGG - chr2_1:15747137-15747156 Msa0197570:intron 50.0%
GTCAAGGACAGTCAAGCCTT+TGG + chr2_1:15747243-15747262 None:intergenic 50.0%
! CAGGGGCACATACTATTGGA+AGG - chr2_1:15747441-15747460 Msa0197570:intron 50.0%
GTGGCCAATGCTGAAACAAG+TGG + chr2_1:15747707-15747726 None:intergenic 50.0%
CCACCCTAACAGAGCAATCA+TGG + chr2_1:15746352-15746371 None:intergenic 50.0%
CCATGATTGCTCTGTTAGGG+TGG - chr2_1:15746349-15746368 Msa0197570:CDS 50.0%
AAGGGATGCCACTGTTGAGT+TGG - chr2_1:15747097-15747116 Msa0197570:intron 50.0%
AGGGATGCCACTGTTGAGTT+GGG - chr2_1:15747098-15747117 Msa0197570:intron 50.0%
ATTGGTCAGTCCCTTATGGG+AGG - chr2_1:15747129-15747148 Msa0197570:intron 50.0%
GTCCCTTATGGGAGGAAAGA+TGG - chr2_1:15747137-15747156 Msa0197570:intron 50.0%
GTCAAGGACAGTCAAGCCTT+TGG + chr2_1:15747243-15747262 None:intergenic 50.0%
! CAGGGGCACATACTATTGGA+AGG - chr2_1:15747441-15747460 Msa0197570:intron 50.0%
GTGGCCAATGCTGAAACAAG+TGG + chr2_1:15747707-15747726 None:intergenic 50.0%
!! GATGCCACTGTTGAGTTGGG+TGG - chr2_1:15747101-15747120 Msa0197570:intron 55.0%
TGGTCCACCCAACTCAACAG+TGG + chr2_1:15747108-15747127 None:intergenic 55.0%
! GGTCTGGTTTGCCTGTTCCT+TGG + chr2_1:15747505-15747524 None:intergenic 55.0%
!! GATGCCACTGTTGAGTTGGG+TGG - chr2_1:15747101-15747120 Msa0197570:intron 55.0%
TGGTCCACCCAACTCAACAG+TGG + chr2_1:15747108-15747127 None:intergenic 55.0%
! GGTCTGGTTTGCCTGTTCCT+TGG + chr2_1:15747505-15747524 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 15746083 15747850 15746083 ID=Msa0197570;Name=Msa0197570
chr2_1 mRNA 15746083 15747850 15746083 ID=Msa0197570-mRNA-1;Parent=Msa0197570;Name=Msa0197570-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|344
chr2_1 exon 15747566 15747850 15747566 ID=Msa0197570-mRNA-1:exon:6588;Parent=Msa0197570-mRNA-1
chr2_1 exon 15746655 15746997 15746655 ID=Msa0197570-mRNA-1:exon:6587;Parent=Msa0197570-mRNA-1
chr2_1 exon 15746083 15746489 15746083 ID=Msa0197570-mRNA-1:exon:6586;Parent=Msa0197570-mRNA-1
chr2_1 CDS 15747566 15747850 15747566 ID=Msa0197570-mRNA-1:cds;Parent=Msa0197570-mRNA-1
chr2_1 CDS 15746655 15746997 15746655 ID=Msa0197570-mRNA-1:cds;Parent=Msa0197570-mRNA-1
chr2_1 CDS 15746083 15746489 15746083 ID=Msa0197570-mRNA-1:cds;Parent=Msa0197570-mRNA-1
Gene Sequence

>Msa0197570

ATGTCAAATTCTTACCTCCGATTGTTGCTTCTTTTGGTTCTTTACATAATTTCAGTTAATTCAACCCAACCTTATGATGAAAACTATGAGGATGCTGAGTTCACTCTACAAGTCCCAACATTAGAGGATACAGATTTGGATAATCTCTTATCCTTTGGTTACTACCGTAAAAGCTGCCCTCAATTTGAATCCATCTTGCATAGCAAAGTCAAAGAATGGATTAAGAAGGATTACACTTTAGCAGCTAGTCTCCTAAGGTTGCACTTCCATGATTGCTCTGTTAGGGGATGTGATGGCTCTATTTTATTGAATCATGAAGGAAGTGAAAGGAAATCACAAGTAAGCAAGACATTGAGAGGTTATGAAGTTATTGATGATATTAAGGCAGAGATAGAGAAACAATGTCCTAAAACAGTCTCTTGTGCTGATATTCTTACAACTGCTTCAAGGGATGCCACTGTTGAGTTGGGTGGACCATATTGGTCAGTCCCTTATGGGAGGAAAGATGGAAAAGTCTCTATTGACAAAGAAGCTGAAATGGTACCAATGGGCCATGAGAACATTACTTCCTTGATCGAATATTTTCAATCCAAAGGCTTGACTGTCCTTGACTTAGTTGTTCTCTCAGGGGCACATACTATTGGAAGGACTACTTGTGGCTCTATTCAATACAGGTTATACAACTACCAAGGAACAGGCAAACCAGACCCATCATTAGATCCAAAATACCTTAACTTCTTGCAAAGAAAATGTAGATGGGCCACAGAATATGTGGATCTTGATGCAACAACACCAAAAAAATTTGACAGAATGTACTACATAAATCTCAAAAAGAAAATGGGATTGTTAACAACAGATCAATTGTTATATTCTGATCCAAGAACTTCTCCACTTGTTTCAGCATTGGCCACAACACCATCTGTTTTTGAACATCAATTTGCTGTTTCAATGTCAAAGTTTGGTGTCATTGATGTTCTTACTGGAGATGATGAAGGAGAAATCAGGACCAATTGCAATTTTGTCAATGCTTATTGA
Protein sequence

>Msa0197570

MSNSYLRLLLLLVLYIISVNSTQPYDENYEDAEFTLQVPTLEDTDLDNLLSFGYYRKSCPQFESILHSKVKEWIKKDYTLAASLLRLHFHDCSVRGCDGSILLNHEGSERKSQVSKTLRGYEVIDDIKAEIEKQCPKTVSCADILTTASRDATVELGGPYWSVPYGRKDGKVSIDKEAEMVPMGHENITSLIEYFQSKGLTVLDLVVLSGAHTIGRTTCGSIQYRLYNYQGTGKPDPSLDPKYLNFLQRKCRWATEYVDLDATTPKKFDRMYYINLKKKMGLLTTDQLLYSDPRTSPLVSALATTPSVFEHQFAVSMSKFGVIDVLTGDDEGEIRTNCNFVNAY*