AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0281820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281820 MtrunA17_Chr2g0296621 94.767 344 17 1 1 344 1 343 0.0 660
Msa0281820 MtrunA17_Chr4g0076211 63.014 292 108 0 51 342 42 333 7.17e-141 402
Msa0281820 MtrunA17_Chr2g0292151 45.875 303 153 5 50 342 29 330 2.68e-83 256
Msa0281820 MtrunA17_Chr2g0292111 44.816 299 154 5 54 342 33 330 1.39e-81 252
Msa0281820 MtrunA17_Chr5g0402571 42.857 301 163 3 50 342 27 326 2.88e-81 250
Msa0281820 MtrunA17_Chr5g0402581 43.189 301 162 3 50 342 27 326 3.53e-81 250
Msa0281820 MtrunA17_Chr5g0404721 44.805 308 160 6 44 342 24 330 1.74e-80 248
Msa0281820 MtrunA17_Chr2g0291751 44.000 300 157 6 53 342 32 330 7.40e-80 248
Msa0281820 MtrunA17_Chr2g0292211 39.080 348 182 6 6 343 15 342 1.56e-78 244
Msa0281820 MtrunA17_Chr2g0292251 42.997 307 164 5 47 343 25 330 6.35e-78 243
Msa0281820 MtrunA17_Chr2g0292181 42.345 307 166 5 47 343 35 340 8.98e-78 242
Msa0281820 MtrunA17_Chr6g0460711 43.624 298 159 5 50 342 21 314 9.25e-78 241
Msa0281820 MtrunA17_Chr2g0292091 42.434 304 164 5 50 343 24 326 1.09e-77 241
Msa0281820 MtrunA17_Chr8g0372601 44.333 300 157 6 54 344 34 332 1.43e-77 241
Msa0281820 MtrunA17_Chr1g0194151 43.279 305 160 6 50 342 30 333 2.77e-77 240
Msa0281820 MtrunA17_Chr4g0046131 42.532 308 165 4 44 339 36 343 4.55e-77 240
Msa0281820 MtrunA17_Chr4g0063671 43.189 301 162 3 50 342 21 320 1.17e-76 238
Msa0281820 MtrunA17_Chr3g0128061 42.434 304 163 6 50 343 26 327 6.37e-76 236
Msa0281820 MtrunA17_Chr2g0292101 42.763 304 163 5 50 343 25 327 8.60e-76 237
Msa0281820 MtrunA17_Chr2g0322861 43.522 301 161 6 50 342 87 386 9.77e-76 238
Msa0281820 MtrunA17_Chr1g0194271 41.667 312 162 6 50 342 30 340 1.12e-75 236
Msa0281820 MtrunA17_Chr2g0292261 41.772 316 169 6 38 343 21 331 2.13e-75 236
Msa0281820 MtrunA17_Chr2g0279041 41.077 297 167 3 53 342 30 325 2.17e-75 235
Msa0281820 MtrunA17_Chr2g0292241 42.667 300 161 5 54 343 33 331 3.18e-75 236
Msa0281820 MtrunA17_Chr3g0106921 41.776 304 158 5 50 342 25 320 7.69e-75 233
Msa0281820 MtrunA17_Chr1g0188431 40.878 296 165 3 50 342 39 327 1.05e-74 233
Msa0281820 MtrunA17_Chr1g0175561 40.532 301 167 5 54 343 28 327 1.21e-74 233
Msa0281820 MtrunA17_Chr4g0024121 42.667 300 159 6 53 342 30 326 3.02e-74 232
Msa0281820 MtrunA17_Chr7g0268501 43.581 296 156 6 54 342 29 320 8.65e-74 231
Msa0281820 MtrunA17_Chr7g0268521 43.581 296 156 6 54 342 29 320 8.65e-74 231
Msa0281820 MtrunA17_Chr3g0114451 42.222 315 166 7 36 342 12 318 1.14e-73 230
Msa0281820 MtrunA17_Chr2g0320091 39.937 318 174 6 34 342 9 318 1.44e-73 230
Msa0281820 MtrunA17_Chr4g0038151 38.941 321 178 6 33 342 8 321 1.80e-73 230
Msa0281820 MtrunA17_Chr8g0371381 40.789 304 163 5 48 342 24 319 2.72e-73 229
Msa0281820 MtrunA17_Chr1g0164891 42.384 302 161 6 53 342 92 392 4.71e-73 231
Msa0281820 MtrunA17_Chr4g0038161 40.717 307 164 7 47 342 21 320 6.95e-73 228
Msa0281820 MtrunA17_Chr5g0432441 40.000 305 163 5 50 342 30 326 2.85e-72 227
Msa0281820 MtrunA17_Chr2g0292271 41.333 300 165 5 54 343 33 331 5.00e-72 227
Msa0281820 MtrunA17_Chr7g0258811 40.850 306 167 8 50 343 69 372 5.22e-72 228
Msa0281820 MtrunA17_Chr1g0157051 40.984 305 168 4 44 341 18 317 6.05e-72 226
Msa0281820 MtrunA17_Chr5g0400331 44.805 308 155 7 49 342 25 331 6.42e-72 226
Msa0281820 MtrunA17_Chr7g0254201 39.867 301 165 6 50 342 20 312 6.72e-72 226
Msa0281820 MtrunA17_Chr4g0013821 41.137 299 164 5 53 343 31 325 1.80e-71 226
Msa0281820 MtrunA17_Chr4g0043391 39.286 308 168 6 47 342 24 324 5.56e-71 224
Msa0281820 MtrunA17_Chr4g0013191 42.140 299 155 5 54 342 50 340 1.05e-70 223
Msa0281820 MtrunA17_Chr2g0320101 38.291 316 179 5 35 342 10 317 1.08e-70 223
Msa0281820 MtrunA17_Chr2g0320071 39.731 297 163 5 54 342 29 317 1.23e-70 223
Msa0281820 MtrunA17_Chr4g0038171 38.961 308 169 6 47 342 21 321 1.74e-70 222
Msa0281820 MtrunA17_Chr1g0155611 42.671 307 161 8 50 342 42 347 3.88e-70 222
Msa0281820 MtrunA17_Chr3g0129051 39.365 315 173 5 34 338 12 318 5.10e-70 221
Msa0281820 MtrunA17_Chr4g0070951 40.132 304 171 5 50 343 28 330 6.59e-70 221
Msa0281820 MtrunA17_Chr2g0292291 40.333 300 167 5 54 342 34 332 9.89e-70 221
Msa0281820 MtrunA17_Chr4g0013201 40.864 301 162 5 50 342 46 338 1.13e-69 221
Msa0281820 MtrunA17_Chr5g0405991 40.728 302 162 5 50 342 23 316 1.59e-69 219
Msa0281820 MtrunA17_Chr4g0068621 38.150 346 193 8 6 342 3 336 2.83e-69 219
Msa0281820 MtrunA17_Chr1g0213061 39.803 304 165 6 50 343 27 322 3.21e-69 219
Msa0281820 MtrunA17_Chr8g0364291 39.333 300 169 6 54 342 27 324 5.77e-69 219
Msa0281820 MtrunA17_Chr7g0224371 40.404 297 162 5 54 343 35 323 6.99e-69 218
Msa0281820 MtrunA17_Chr4g0013171 42.904 303 155 7 50 342 27 321 7.83e-69 218
Msa0281820 MtrunA17_Chr7g0244461 37.874 301 171 5 50 342 20 312 2.05e-68 217
Msa0281820 MtrunA17_Chr3g0129061 41.137 299 158 5 50 338 28 318 4.42e-68 216
Msa0281820 MtrunA17_Chr7g0254231 39.404 302 164 6 50 343 22 312 5.97e-68 216
Msa0281820 MtrunA17_Chr4g0072091 37.710 297 176 5 50 338 24 319 7.72e-68 216
Msa0281820 MtrunA17_Chr2g0320031 39.735 302 165 7 50 342 26 319 1.06e-67 215
Msa0281820 MtrunA17_Chr4g0013721 39.933 298 167 6 53 342 103 396 2.32e-67 217
Msa0281820 MtrunA17_Chr1g0197411 37.171 304 179 5 50 342 28 330 3.86e-67 214
Msa0281820 MtrunA17_Chr1g0181431 39.803 304 167 5 50 343 27 324 4.12e-67 214
Msa0281820 MtrunA17_Chr2g0320051 39.130 299 163 7 54 342 29 318 4.84e-67 213
Msa0281820 MtrunA17_Chr7g0244451 38.538 301 169 5 50 342 24 316 7.10e-67 213
Msa0281820 MtrunA17_Chr1g0204011 38.926 298 167 4 54 342 31 322 1.01e-66 213
Msa0281820 MtrunA17_Chr5g0401431 37.954 303 176 6 50 341 27 328 1.13e-66 213
Msa0281820 MtrunA17_Chr2g0299691 40.532 301 167 5 54 343 60 359 1.41e-66 213
Msa0281820 MtrunA17_Chr5g0438021 40.924 303 161 6 50 342 31 325 1.45e-66 212
Msa0281820 MtrunA17_Chr1g0181511 39.474 304 168 5 50 343 27 324 5.45e-66 211
Msa0281820 MtrunA17_Chr6g0467161 37.458 299 174 4 50 342 45 336 7.40e-66 211
Msa0281820 MtrunA17_Chr6g0477071 37.374 297 174 5 50 342 54 342 2.25e-65 210
Msa0281820 MtrunA17_Chr1g0148021 37.255 306 175 7 50 342 27 328 2.48e-65 209
Msa0281820 MtrunA17_Chr2g0320061 36.909 317 183 6 35 342 10 318 4.50e-65 208
Msa0281820 MtrunA17_Chr6g0467121 38.255 298 173 4 50 343 74 364 6.45e-65 210
Msa0281820 MtrunA17_Chr6g0467251 38.514 296 168 5 50 338 36 324 7.15e-65 209
Msa0281820 MtrunA17_Chr3g0106901 41.860 301 159 5 50 342 31 323 2.53e-64 206
Msa0281820 MtrunA17_Chr1g0181481 38.487 304 171 5 50 343 27 324 4.24e-64 206
Msa0281820 MtrunA17_Chr6g0451571 37.171 304 177 7 50 342 34 334 8.32e-64 206
Msa0281820 MtrunA17_Chr2g0278671 40.066 302 170 5 50 342 24 323 3.12e-63 204
Msa0281820 MtrunA17_Chr3g0129041 40.594 303 162 6 50 342 28 322 9.18e-63 202
Msa0281820 MtrunA17_Chr4g0013181 41.472 299 157 7 54 342 63 353 1.72e-62 202
Msa0281820 MtrunA17_Chr2g0316481 36.585 328 168 6 50 338 76 402 5.79e-62 203
Msa0281820 MtrunA17_Chr2g0316791 37.386 329 166 7 50 339 76 403 1.16e-61 202
Msa0281820 MtrunA17_Chr2g0316191 36.364 330 169 6 50 339 76 404 1.38e-61 202
Msa0281820 MtrunA17_Chr2g0316831 36.280 328 169 6 50 338 112 438 2.32e-61 202
Msa0281820 MtrunA17_Chr5g0421411 41.091 275 148 6 81 342 12 285 1.26e-60 196
Msa0281820 MtrunA17_Chr5g0432331 40.984 305 160 9 50 342 56 352 1.31e-60 198
Msa0281820 MtrunA17_Chr3g0107881 41.060 302 157 10 54 342 31 324 1.75e-60 197
Msa0281820 MtrunA17_Chr4g0074851 36.928 306 177 5 47 342 29 328 2.70e-60 196
Msa0281820 MtrunA17_Chr5g0413051 36.808 307 178 6 50 342 73 377 1.90e-59 196
Msa0281820 MtrunA17_Chr5g0432351 40.328 305 162 9 50 342 25 321 5.38e-59 193
Msa0281820 MtrunA17_Chr4g0075241 36.721 305 179 6 48 342 27 327 6.98e-59 192
Msa0281820 MtrunA17_Chr2g0311251 35.435 333 170 8 50 341 11 339 1.17e-58 192
Msa0281820 MtrunA17_Chr4g0053871 35.333 300 177 6 50 338 27 320 4.25e-58 191
Msa0281820 MtrunA17_Chr5g0432341 40.000 305 163 9 50 342 25 321 1.60e-57 189
Msa0281820 MtrunA17_Chr2g0279061 39.844 256 146 3 94 342 12 266 2.78e-57 186
Msa0281820 MtrunA17_Chr7g0225221 36.027 297 177 5 54 342 29 320 1.21e-55 184
Msa0281820 MtrunA17_Chr2g0311241 32.345 371 171 7 50 341 60 429 4.96e-55 186
Msa0281820 MtrunA17_Chr2g0329641 38.284 303 174 5 50 342 36 335 6.62e-55 182
Msa0281820 MtrunA17_Chr3g0136751 37.333 300 179 5 50 342 25 322 1.34e-50 171
Msa0281820 MtrunA17_Chr2g0316811 38.565 223 116 4 50 251 50 272 2.01e-44 155
Msa0281820 MtrunA17_Chr2g0292281 42.029 207 109 4 139 342 18 216 4.44e-44 151
Msa0281820 MtrunA17_Chr4g0004591 30.284 317 160 5 49 341 76 355 3.71e-39 142
Msa0281820 MtrunA17_Chr5g0432401 34.323 303 144 11 49 341 28 285 4.12e-38 137
Msa0281820 MtrunA17_Chr2g0316141 31.338 284 136 8 96 339 11 275 8.06e-35 128
Msa0281820 MtrunA17_Chr2g0316181 31.338 284 136 8 96 339 11 275 8.06e-35 128
Msa0281820 MtrunA17_Chr3g0114491 46.457 127 64 1 34 156 2 128 8.46e-33 119
Msa0281820 MtrunA17_Chr3g0114461 38.542 192 105 7 156 342 9 192 1.74e-28 109
Msa0281820 MtrunA17_Chr1g0181501 36.041 197 112 5 154 343 1 190 2.52e-28 108
Msa0281820 MtrunA17_Chr6g0468731 53.030 66 31 0 89 154 22 87 1.91e-19 82.0
Msa0281820 MtrunA17_Chr1g0181491 44.340 106 55 3 50 152 12 116 5.87e-19 82.4
Msa0281820 MtrunA17_Chr7g0254181 41.748 103 58 2 109 211 22 122 1.21e-18 81.6
Msa0281820 MtrunA17_Chr7g0254171 34.058 138 82 3 95 228 3 135 3.88e-16 74.3
Msa0281820 MtrunA17_Chr4g0013811 44.737 76 41 1 154 228 3 78 1.98e-14 67.8
Msa0281820 MtrunA17_Chr1g0196191 50.000 64 29 1 92 152 27 90 4.87e-14 68.9
Msa0281820 MtrunA17_Chr5g0432321 36.585 123 68 3 167 286 17 132 7.24e-14 67.8
Msa0281820 MtrunA17_Chr3g0104101 35.211 142 83 4 209 342 9 149 7.89e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281820 AT1G30870.1 61.000 300 115 2 46 343 47 346 9.76e-133 382
Msa0281820 AT3G03670.1 42.333 300 165 4 50 342 23 321 5.58e-87 265
Msa0281820 AT5G17820.1 41.638 293 168 3 50 342 24 313 6.11e-86 262
Msa0281820 AT5G17820.2 41.638 293 168 3 50 342 77 366 2.16e-84 260
Msa0281820 AT1G49570.1 44.702 302 155 6 50 340 48 348 2.06e-83 257
Msa0281820 AT4G36430.1 44.000 300 158 7 53 343 33 331 4.94e-81 250
Msa0281820 AT2G18150.1 43.144 299 160 6 53 342 39 336 5.73e-81 250
Msa0281820 AT1G05240.1 42.384 302 165 5 49 342 25 325 1.17e-80 249
Msa0281820 AT1G05250.1 42.384 302 165 5 49 342 25 325 1.17e-80 249
Msa0281820 AT2G41480.1 43.894 303 161 3 48 342 27 328 6.12e-80 247
Msa0281820 AT5G15180.1 45.151 299 157 5 50 342 32 329 1.78e-79 246
Msa0281820 AT2G18140.1 42.675 314 161 7 47 342 23 335 1.49e-78 244
Msa0281820 AT5G64120.1 42.034 295 164 4 52 342 37 328 1.64e-78 243
Msa0281820 AT4G11290.1 43.607 305 157 7 50 342 25 326 2.54e-77 240
Msa0281820 AT3G21770.1 43.771 297 158 6 50 338 29 324 3.07e-77 240
Msa0281820 AT1G05260.1 43.709 302 161 6 50 343 26 326 3.63e-77 240
Msa0281820 AT2G39040.1 43.791 306 158 6 50 342 46 350 3.90e-77 241
Msa0281820 AT3G01190.1 44.816 299 156 6 50 342 26 321 4.32e-77 239
Msa0281820 AT4G08770.1 43.137 306 161 6 50 343 24 328 4.59e-77 240
Msa0281820 AT5G66390.1 43.289 298 159 6 54 342 37 333 5.07e-76 237
Msa0281820 AT4G08780.1 42.810 306 162 6 50 343 24 328 7.05e-76 237
Msa0281820 AT2G38390.1 43.000 300 159 6 54 342 35 333 8.96e-76 237
Msa0281820 AT4G16270.1 44.300 307 157 7 46 342 46 348 1.89e-75 236
Msa0281820 AT5G06720.1 39.667 300 170 5 54 343 36 334 3.43e-74 233
Msa0281820 AT5G19880.1 40.196 306 169 6 50 342 25 329 1.31e-73 231
Msa0281820 AT3G50990.1 41.722 302 166 6 50 342 41 341 1.96e-73 231
Msa0281820 AT2G34060.1 44.040 302 157 5 50 339 42 343 2.94e-73 231
Msa0281820 AT5G64100.1 37.572 346 197 7 1 342 1 331 3.24e-73 230
Msa0281820 AT3G49110.1 41.424 309 168 6 47 343 30 337 5.64e-73 230
Msa0281820 AT5G06730.1 39.000 300 172 6 54 343 37 335 6.54e-73 230
Msa0281820 AT5G19890.1 41.196 301 166 4 50 342 30 327 7.66e-73 229
Msa0281820 AT3G49120.1 41.391 302 164 6 54 343 36 336 8.08e-73 229
Msa0281820 AT2G38380.1 43.000 300 159 6 54 342 35 333 2.00e-72 229
Msa0281820 AT5G05340.1 39.274 303 166 5 50 342 30 324 3.18e-72 227
Msa0281820 AT3G32980.1 42.715 302 160 7 54 343 35 335 3.29e-72 228
Msa0281820 AT4G33420.1 41.216 296 164 3 50 342 37 325 1.25e-71 226
Msa0281820 AT4G33420.2 41.216 296 164 3 50 342 84 372 7.38e-71 225
Msa0281820 AT2G22420.1 41.077 297 163 6 54 342 27 319 2.61e-70 223
Msa0281820 AT1G71695.1 37.119 361 186 9 1 342 1 339 8.52e-70 222
Msa0281820 AT1G68850.1 40.391 307 168 6 50 342 30 335 1.05e-69 221
Msa0281820 AT5G51890.1 40.333 300 161 5 54 342 30 322 2.31e-69 220
Msa0281820 AT5G39580.1 40.000 295 171 4 52 342 27 319 2.71e-69 219
Msa0281820 AT1G44970.1 42.140 299 162 6 54 342 49 346 2.94e-69 220
Msa0281820 AT5G42180.1 40.199 301 164 5 50 341 23 316 3.13e-69 219
Msa0281820 AT5G64110.1 39.865 296 170 4 53 342 37 330 1.98e-68 218
Msa0281820 AT4G30170.1 36.545 301 181 6 50 342 27 325 3.42e-67 214
Msa0281820 AT1G14550.1 42.295 305 155 8 50 342 26 321 5.06e-67 214
Msa0281820 AT2G35380.1 41.776 304 162 8 53 342 33 335 5.23e-67 214
Msa0281820 AT2G18980.1 37.874 301 177 6 50 342 25 323 1.91e-66 212
Msa0281820 AT4G25980.1 39.735 302 172 4 50 342 26 326 5.25e-66 211
Msa0281820 AT5G22410.1 39.189 296 171 5 50 338 28 321 6.68e-66 211
Msa0281820 AT1G77100.1 39.274 303 167 7 50 342 24 319 8.73e-66 211
Msa0281820 AT2G24800.1 41.528 301 166 5 50 342 31 329 1.18e-65 211
Msa0281820 AT4G17690.1 36.789 299 173 6 54 342 30 322 5.20e-65 209
Msa0281820 AT4G31760.1 39.735 302 169 5 50 342 29 326 1.75e-64 207
Msa0281820 AT4G26010.1 37.919 298 170 6 50 342 22 309 4.77e-64 206
Msa0281820 AT5G40150.1 37.954 303 172 6 50 342 32 328 7.26e-64 206
Msa0281820 AT4G26010.2 37.919 298 170 6 50 342 50 337 9.52e-64 206
Msa0281820 AT5G47000.1 37.255 306 173 7 49 342 32 330 1.50e-63 205
Msa0281820 AT5G58390.1 39.189 296 161 5 54 338 25 312 1.74e-63 204
Msa0281820 AT3G28200.1 37.294 303 173 6 50 342 21 316 2.97e-63 204
Msa0281820 AT3G49960.1 35.855 304 183 5 50 342 27 329 3.90e-63 204
Msa0281820 AT5G14130.1 37.000 300 181 5 50 342 32 330 9.48e-63 203
Msa0281820 AT5G24070.1 36.842 304 180 4 50 343 35 336 2.44e-62 202
Msa0281820 AT5G14130.2 37.000 300 181 5 50 342 73 371 4.51e-62 202
Msa0281820 AT1G14540.1 38.411 302 170 7 50 342 21 315 8.00e-62 200
Msa0281820 AT5G58400.1 35.758 330 192 6 25 342 4 325 7.56e-61 198
Msa0281820 AT2G37130.1 38.158 304 171 6 50 342 30 327 7.66e-61 198
Msa0281820 AT2G43480.1 35.294 323 191 5 30 342 21 335 1.11e-60 198
Msa0281820 AT2G37130.2 38.079 302 170 6 52 342 1 296 1.27e-60 196
Msa0281820 AT4G37530.1 34.333 300 185 5 54 342 31 329 7.77e-60 196
Msa0281820 AT4G37520.1 34.539 304 187 6 50 342 27 329 9.03e-60 195
Msa0281820 AT5G67400.1 34.375 320 197 6 34 342 12 329 9.13e-60 195
Msa0281820 AT4G33870.1 31.781 365 199 7 17 339 42 398 1.27e-59 197
Msa0281820 AT4G37520.2 34.539 304 184 7 50 342 27 326 1.03e-58 192
Msa0281820 AT1G34510.1 38.255 298 169 6 50 342 22 309 1.51e-57 189
Msa0281820 AT4G21960.1 36.246 309 181 5 44 342 25 327 1.80e-57 189
Msa0281820 AT1G24110.1 39.216 306 172 7 50 344 22 324 7.46e-57 187
Msa0281820 AT3G17070.1 36.482 307 176 7 50 342 38 339 9.87e-56 185
Msa0281820 AT4G37530.2 34.127 252 155 4 54 294 31 282 9.85e-51 171
Msa0281820 AT2G35380.2 40.928 237 129 6 116 342 12 247 3.27e-47 160
Msa0281820 AT2G24800.2 45.679 162 87 1 50 210 31 192 6.03e-42 146
Msa0281820 AT4G25980.2 45.732 164 88 1 50 212 71 234 9.85e-42 147
Msa0281820 AT5G39580.2 41.071 168 99 0 52 219 27 194 8.38e-41 143
Msa0281820 AT3G17070.2 34.483 261 152 7 96 342 21 276 1.80e-38 138

Find 66 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAGAAGTTAAGGTATTT+TGG 0.131323 2_3:+17408818 None:intergenic
CCTCCGATTGTTGCTTCTTT+TGG 0.213392 2_3:-17410260 Msa0281820:CDS
ACTTCCATGATTGCTCTGTT+AGG 0.266056 2_3:-17410012 Msa0281820:CDS
TGAAGTTATTGATGATATTA+AGG 0.280197 2_3:-17409341 Msa0281820:CDS
CCATATTGGTCAGTCCCTTA+TGG 0.281860 2_3:-17409229 Msa0281820:CDS
GGTGTCATTGATGTTCTTAC+TGG 0.290141 2_3:-17408578 Msa0281820:CDS
CTTGACTTGGTTGTTCTCTC+AGG 0.329021 2_3:-17409097 Msa0281820:intron
GGTCTGGTTTGCCTGTTCTT+TGG 0.332830 2_3:+17408852 None:intergenic
AACATTAGAGGATACAGATT+TGG 0.336587 2_3:-17410158 Msa0281820:CDS
TATTCAGGGGCACATACTAT+TGG 0.363846 2_3:-17408917 Msa0281820:intron
TCTTGCAAAGAAAATGTAGA+TGG 0.363928 2_3:-17408802 Msa0281820:CDS
TTGGATAATCTCTTATCCTT+TGG 0.369990 2_3:-17410139 Msa0281820:CDS
TCTACAAGTCCCAACATTAG+AGG 0.388107 2_3:-17410170 Msa0281820:CDS
TTTCCATCTTTCCTCCCATA+AGG 0.389130 2_3:+17409214 None:intergenic
GCTGTTTCAATGTCAAAGTT+TGG 0.390316 2_3:-17408599 Msa0281820:CDS
TTCCATCTTTCCTCCCATAA+GGG 0.402901 2_3:+17409215 None:intergenic
TTTGGATCTAATGATGGGTC+TGG 0.404975 2_3:+17408836 None:intergenic
CATATTGGTCAGTCCCTTAT+GGG 0.409021 2_3:-17409228 Msa0281820:CDS
AGCATTGACAAAATTGCAAT+TGG 0.413153 2_3:+17408532 None:intergenic
TATTGACAAAGAAGCTGAAA+TGG 0.416623 2_3:-17409185 Msa0281820:CDS
GTCAAGGACAGTCAAGCCTT+TGG 0.417326 2_3:+17409114 None:intergenic
ATATTCTTACAACTGCTTCA+AGG 0.425738 2_3:-17409276 Msa0281820:CDS
GAAACAAGTGGAGAAGTTCT+TGG 0.427170 2_3:+17408662 None:intergenic
CTTCCATGATTGCTCTGTTA+GGG 0.430268 2_3:-17410011 Msa0281820:intron
CCATAAGGGACTGACCAATA+TGG 0.445922 2_3:+17409229 None:intergenic
TTCTCCACTTGTTTCAGCAT+TGG 0.449242 2_3:-17408654 Msa0281820:CDS
CCACCCTAACAGAGCAATCA+TGG 0.454699 2_3:+17410008 None:intergenic
CTTGTGGCTCTATTCAATAC+AGG 0.457006 2_3:-17408886 Msa0281820:CDS
AGGGATGCCACTGTTGAGTT+GGG 0.457543 2_3:-17409256 Msa0281820:CDS
GTCCCTTATGGGAGGAAAGA+TGG 0.458270 2_3:-17409217 Msa0281820:CDS
AAATCTGTATCCTCTAATGT+TGG 0.458659 2_3:+17410160 None:intergenic
AGGCTTGACTGTCCTTGACT+TGG 0.463179 2_3:-17409110 Msa0281820:CDS
TTTGACTTTGCTATGCAAGA+TGG 0.467791 2_3:+17410084 None:intergenic
TTATACAACTACCAAAGAAC+AGG 0.469093 2_3:-17408863 Msa0281820:CDS
TGCATAGCAAAGTCAAAGAA+TGG 0.476889 2_3:-17410078 Msa0281820:CDS
AAGGGATGCCACTGTTGAGT+TGG 0.488094 2_3:-17409257 Msa0281820:CDS
AATCTGTATCCTCTAATGTT+GGG 0.489759 2_3:+17410161 None:intergenic
TGCAAGATGGATTCAAATTG+AGG 0.491467 2_3:+17410097 None:intergenic
TTGAGTTGGGTGGACCATAT+TGG 0.502726 2_3:-17409243 Msa0281820:CDS
AATCATGGAAGTGCAACCTT+AGG 0.505171 2_3:+17410023 None:intergenic
TATTCTTACAACTGCTTCAA+GGG 0.505713 2_3:-17409275 Msa0281820:CDS
CTTTAGCAGCTAGTCTCCTA+AGG 0.506408 2_3:-17410039 Msa0281820:CDS
AGAAGCTGAAATGGTACCAA+TGG 0.515929 2_3:-17409176 Msa0281820:CDS
GGATTGAAAATATTCAATCA+AGG 0.521519 2_3:+17409135 None:intergenic
GAAGCTGAAATGGTACCAAT+GGG 0.535263 2_3:-17409175 Msa0281820:CDS
GAGATGAAGAAGGAGAAATC+AGG 0.536319 2_3:-17408556 Msa0281820:CDS
GAACCAAAAGAAGCAACAAT+CGG 0.537109 2_3:+17410257 None:intergenic
GCAAGATGGATTCAAATTGA+GGG 0.538287 2_3:+17410098 None:intergenic
ACCTTATGATGAAAACTATG+AGG 0.539825 2_3:-17410206 Msa0281820:CDS
AGTCAAAGAATGGATTAAGA+AGG 0.547241 2_3:-17410068 Msa0281820:CDS
TAGATGGGCCTCAGAATATG+TGG 0.552895 2_3:-17408786 Msa0281820:CDS
GTTCTTACTGGAGATGAAGA+AGG 0.559691 2_3:-17408566 Msa0281820:CDS
TCAAGGAAGTAATGTTCTCA+TGG 0.568582 2_3:+17409152 None:intergenic
GTAATGTTCTCATGGCCCAT+TGG 0.578787 2_3:+17409160 None:intergenic
CTTGCAAAGAAAATGTAGAT+GGG 0.583573 2_3:-17408801 Msa0281820:CDS
CAAGTAAGCAAGACATTGAG+AGG 0.601262 2_3:-17409367 Msa0281820:CDS
TGAATCATGAAGGAAGTGAA+AGG 0.602756 2_3:-17409396 Msa0281820:CDS
CAGGGGCACATACTATTGGA+AGG 0.617965 2_3:-17408913 Msa0281820:CDS
ATCAAGATCCACATATTCTG+AGG 0.649365 2_3:+17408778 None:intergenic
CTGAGAGAACAACCAAGTCA+AGG 0.658347 2_3:+17409098 None:intergenic
ACTATTGGAAGGACTACTTG+TGG 0.665121 2_3:-17408902 Msa0281820:CDS
CCAAAAGAAGCAACAATCGG+AGG 0.665472 2_3:+17410260 None:intergenic
GATGCCACTGTTGAGTTGGG+TGG 0.668142 2_3:-17409253 Msa0281820:CDS
GTGGCCAATGCTGAAACAAG+TGG 0.669223 2_3:+17408650 None:intergenic
ATTGGTCAGTCCCTTATGGG+AGG 0.681509 2_3:-17409225 Msa0281820:CDS
TGGTCCACCCAACTCAACAG+TGG 0.695362 2_3:+17409249 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAGTAAAAAATGAATA+TGG + chr2_3:17409330-17409349 None:intergenic 10.0%
!! ATATTAATATAGAAAACAAT+TGG + chr2_3:17409866-17409885 None:intergenic 10.0%
!! TATATAGTAAAAAATGAATA+TGG + chr2_3:17409330-17409349 None:intergenic 10.0%
!! ATATTAATATAGAAAACAAT+TGG + chr2_3:17409866-17409885 None:intergenic 10.0%
!!! ATATACTTATTTGAACTTTT+TGG - chr2_3:17409345-17409364 Msa0281820:CDS 15.0%
!!! TGTTTTCTATATTAATATTC+AGG - chr2_3:17409868-17409887 Msa0281820:intron 15.0%
!!! GTTTTCTATATTAATATTCA+GGG - chr2_3:17409869-17409888 Msa0281820:intron 15.0%
!!! TTTTCTATATTAATATTCAG+GGG - chr2_3:17409870-17409889 Msa0281820:intron 15.0%
!! ATAAATCTCAAAAAGAAAAT+GGG - chr2_3:17410081-17410100 Msa0281820:CDS 15.0%
!!! ATATACTTATTTGAACTTTT+TGG - chr2_3:17409345-17409364 Msa0281820:CDS 15.0%
!!! TGTTTTCTATATTAATATTC+AGG - chr2_3:17409868-17409887 Msa0281820:intron 15.0%
!!! GTTTTCTATATTAATATTCA+GGG - chr2_3:17409869-17409888 Msa0281820:intron 15.0%
!!! TTTTCTATATTAATATTCAG+GGG - chr2_3:17409870-17409889 Msa0281820:intron 15.0%
!! ATAAATCTCAAAAAGAAAAT+GGG - chr2_3:17410081-17410100 Msa0281820:CDS 15.0%
!! ATGCAAAACATATAAATACA+CGG + chr2_3:17409029-17409048 None:intergenic 20.0%
!!! ATGTTTTGCATTATTTTTCA+TGG - chr2_3:17409038-17409057 Msa0281820:intron 20.0%
!!! TTCAATTTTCAACAAAATCA+CGG - chr2_3:17409232-17409251 Msa0281820:CDS 20.0%
!! TATTAGATTAAGTGCATATT+TGG + chr2_3:17409269-17409288 None:intergenic 20.0%
!!! ACAATAGATTCATAATTTGT+AGG - chr2_3:17409301-17409320 Msa0281820:CDS 20.0%
!!! TTTTTGGCTGTATTTTTAAA+GGG - chr2_3:17409361-17409380 Msa0281820:CDS 20.0%
!!! TCTATTTTATTGAATCATGA+AGG - chr2_3:17409394-17409413 Msa0281820:CDS 20.0%
!!! TGAAGTTATTGATGATATTA+AGG - chr2_3:17409459-17409478 Msa0281820:intron 20.0%
!!! ATTGAATATTTTCAATCCAA+AGG - chr2_3:17409670-17409689 Msa0281820:intron 20.0%
!!! TACATTCTGTCAAATTTTTT+TGG + chr2_3:17410057-17410076 None:intergenic 20.0%
!! CATAAATCTCAAAAAGAAAA+TGG - chr2_3:17410080-17410099 Msa0281820:CDS 20.0%
!! ATGCAAAACATATAAATACA+CGG + chr2_3:17409029-17409048 None:intergenic 20.0%
!!! ATGTTTTGCATTATTTTTCA+TGG - chr2_3:17409038-17409057 Msa0281820:intron 20.0%
!!! TTCAATTTTCAACAAAATCA+CGG - chr2_3:17409232-17409251 Msa0281820:CDS 20.0%
!! TATTAGATTAAGTGCATATT+TGG + chr2_3:17409269-17409288 None:intergenic 20.0%
!!! ACAATAGATTCATAATTTGT+AGG - chr2_3:17409301-17409320 Msa0281820:CDS 20.0%
!!! TTTTTGGCTGTATTTTTAAA+GGG - chr2_3:17409361-17409380 Msa0281820:CDS 20.0%
!!! TCTATTTTATTGAATCATGA+AGG - chr2_3:17409394-17409413 Msa0281820:CDS 20.0%
!!! TGAAGTTATTGATGATATTA+AGG - chr2_3:17409459-17409478 Msa0281820:intron 20.0%
!!! ATTGAATATTTTCAATCCAA+AGG - chr2_3:17409670-17409689 Msa0281820:intron 20.0%
!!! TACATTCTGTCAAATTTTTT+TGG + chr2_3:17410057-17410076 None:intergenic 20.0%
!! CATAAATCTCAAAAAGAAAA+TGG - chr2_3:17410080-17410099 Msa0281820:CDS 20.0%
!! ATAGTTTTCATCATAAGGTT+GGG + chr2_3:17408593-17408612 None:intergenic 25.0%
! AGAAATCATCTCATCAAAAT+CGG + chr2_3:17408889-17408908 None:intergenic 25.0%
! ACATATAAATACACGGATAA+TGG + chr2_3:17409022-17409041 None:intergenic 25.0%
!!! TGCATTATTTTTCATGGATT+TGG - chr2_3:17409044-17409063 Msa0281820:intron 25.0%
!! TTCATGTTTGGTAATTTGAT+TGG + chr2_3:17409117-17409136 None:intergenic 25.0%
!!! CTTTTTGGCTGTATTTTTAA+AGG - chr2_3:17409360-17409379 Msa0281820:CDS 25.0%
! GGATTGAAAATATTCAATCA+AGG + chr2_3:17409668-17409687 None:intergenic 25.0%
!! ATTTTCTTTGCAAGAAGTTA+AGG + chr2_3:17409993-17410012 None:intergenic 25.0%
! AATTGATGTTCAAAAACAGA+TGG + chr2_3:17410180-17410199 None:intergenic 25.0%
!! ATAGTTTTCATCATAAGGTT+GGG + chr2_3:17408593-17408612 None:intergenic 25.0%
! AGAAATCATCTCATCAAAAT+CGG + chr2_3:17408889-17408908 None:intergenic 25.0%
! ACATATAAATACACGGATAA+TGG + chr2_3:17409022-17409041 None:intergenic 25.0%
!!! TGCATTATTTTTCATGGATT+TGG - chr2_3:17409044-17409063 Msa0281820:intron 25.0%
!! TTCATGTTTGGTAATTTGAT+TGG + chr2_3:17409117-17409136 None:intergenic 25.0%
!!! CTTTTTGGCTGTATTTTTAA+AGG - chr2_3:17409360-17409379 Msa0281820:CDS 25.0%
! GGATTGAAAATATTCAATCA+AGG + chr2_3:17409668-17409687 None:intergenic 25.0%
!! ATTTTCTTTGCAAGAAGTTA+AGG + chr2_3:17409993-17410012 None:intergenic 25.0%
! AATTGATGTTCAAAAACAGA+TGG + chr2_3:17410180-17410199 None:intergenic 25.0%
! CATAGTTTTCATCATAAGGT+TGG + chr2_3:17408594-17408613 None:intergenic 30.0%
ACCTTATGATGAAAACTATG+AGG - chr2_3:17408594-17408613 Msa0281820:CDS 30.0%
! TCCTCATAGTTTTCATCATA+AGG + chr2_3:17408598-17408617 None:intergenic 30.0%
AATCTGTATCCTCTAATGTT+GGG + chr2_3:17408642-17408661 None:intergenic 30.0%
AAATCTGTATCCTCTAATGT+TGG + chr2_3:17408643-17408662 None:intergenic 30.0%
AACATTAGAGGATACAGATT+TGG - chr2_3:17408642-17408661 Msa0281820:CDS 30.0%
TTGGATAATCTCTTATCCTT+TGG - chr2_3:17408661-17408680 Msa0281820:CDS 30.0%
!! AGTCAAAGAATGGATTAAGA+AGG - chr2_3:17408732-17408751 Msa0281820:CDS 30.0%
TTTGGATTTCCTATAGTAGT+CGG - chr2_3:17409062-17409081 Msa0281820:intron 30.0%
CAAACATACACTAGAGTAAA+TGG + chr2_3:17409147-17409166 None:intergenic 30.0%
CATTTACTCTAGTGTATGTT+TGG - chr2_3:17409145-17409164 Msa0281820:CDS 30.0%
! ATTTTCAACAAAATCACGGT+CGG - chr2_3:17409236-17409255 Msa0281820:CDS 30.0%
!! GTATTTTTAAAGGGATGTGA+TGG - chr2_3:17409370-17409389 Msa0281820:CDS 30.0%
ATATTCTTACAACTGCTTCA+AGG - chr2_3:17409524-17409543 Msa0281820:intron 30.0%
TATTCTTACAACTGCTTCAA+GGG - chr2_3:17409525-17409544 Msa0281820:intron 30.0%
TATTGACAAAGAAGCTGAAA+TGG - chr2_3:17409615-17409634 Msa0281820:intron 30.0%
TGAGAATGACTTACAAAGAT+AGG - chr2_3:17409818-17409837 Msa0281820:intron 30.0%
GAGAATGACTTACAAAGATA+GGG - chr2_3:17409819-17409838 Msa0281820:intron 30.0%
TGGTTAGTAAACCATCAAAT+TGG + chr2_3:17409846-17409865 None:intergenic 30.0%
TTATACAACTACCAAAGAAC+AGG - chr2_3:17409937-17409956 Msa0281820:intron 30.0%
!! GGTATTTTGGATCTAATGAT+GGG + chr2_3:17409972-17409991 None:intergenic 30.0%
!! AGGTATTTTGGATCTAATGA+TGG + chr2_3:17409973-17409992 None:intergenic 30.0%
!! TGCAAGAAGTTAAGGTATTT+TGG + chr2_3:17409985-17410004 None:intergenic 30.0%
TCTTGCAAAGAAAATGTAGA+TGG - chr2_3:17409998-17410017 Msa0281820:intron 30.0%
CTTGCAAAGAAAATGTAGAT+GGG - chr2_3:17409999-17410018 Msa0281820:intron 30.0%
!! AGCATTGACAAAATTGCAAT+TGG + chr2_3:17410271-17410290 None:intergenic 30.0%
! CATAGTTTTCATCATAAGGT+TGG + chr2_3:17408594-17408613 None:intergenic 30.0%
ACCTTATGATGAAAACTATG+AGG - chr2_3:17408594-17408613 Msa0281820:CDS 30.0%
! TCCTCATAGTTTTCATCATA+AGG + chr2_3:17408598-17408617 None:intergenic 30.0%
AATCTGTATCCTCTAATGTT+GGG + chr2_3:17408642-17408661 None:intergenic 30.0%
AAATCTGTATCCTCTAATGT+TGG + chr2_3:17408643-17408662 None:intergenic 30.0%
AACATTAGAGGATACAGATT+TGG - chr2_3:17408642-17408661 Msa0281820:CDS 30.0%
TTGGATAATCTCTTATCCTT+TGG - chr2_3:17408661-17408680 Msa0281820:CDS 30.0%
!! AGTCAAAGAATGGATTAAGA+AGG - chr2_3:17408732-17408751 Msa0281820:CDS 30.0%
TTTGGATTTCCTATAGTAGT+CGG - chr2_3:17409062-17409081 Msa0281820:intron 30.0%
CAAACATACACTAGAGTAAA+TGG + chr2_3:17409147-17409166 None:intergenic 30.0%
CATTTACTCTAGTGTATGTT+TGG - chr2_3:17409145-17409164 Msa0281820:CDS 30.0%
! ATTTTCAACAAAATCACGGT+CGG - chr2_3:17409236-17409255 Msa0281820:CDS 30.0%
!! GTATTTTTAAAGGGATGTGA+TGG - chr2_3:17409370-17409389 Msa0281820:CDS 30.0%
ATATTCTTACAACTGCTTCA+AGG - chr2_3:17409524-17409543 Msa0281820:intron 30.0%
TATTCTTACAACTGCTTCAA+GGG - chr2_3:17409525-17409544 Msa0281820:intron 30.0%
TATTGACAAAGAAGCTGAAA+TGG - chr2_3:17409615-17409634 Msa0281820:intron 30.0%
TGAGAATGACTTACAAAGAT+AGG - chr2_3:17409818-17409837 Msa0281820:intron 30.0%
GAGAATGACTTACAAAGATA+GGG - chr2_3:17409819-17409838 Msa0281820:intron 30.0%
TGGTTAGTAAACCATCAAAT+TGG + chr2_3:17409846-17409865 None:intergenic 30.0%
TTATACAACTACCAAAGAAC+AGG - chr2_3:17409937-17409956 Msa0281820:intron 30.0%
!! GGTATTTTGGATCTAATGAT+GGG + chr2_3:17409972-17409991 None:intergenic 30.0%
!! AGGTATTTTGGATCTAATGA+TGG + chr2_3:17409973-17409992 None:intergenic 30.0%
!! TGCAAGAAGTTAAGGTATTT+TGG + chr2_3:17409985-17410004 None:intergenic 30.0%
TCTTGCAAAGAAAATGTAGA+TGG - chr2_3:17409998-17410017 Msa0281820:intron 30.0%
CTTGCAAAGAAAATGTAGAT+GGG - chr2_3:17409999-17410018 Msa0281820:intron 30.0%
!! AGCATTGACAAAATTGCAAT+TGG + chr2_3:17410271-17410290 None:intergenic 30.0%
GAACCAAAAGAAGCAACAAT+CGG + chr2_3:17408546-17408565 None:intergenic 35.0%
! GCAAGATGGATTCAAATTGA+GGG + chr2_3:17408705-17408724 None:intergenic 35.0%
! TGCAAGATGGATTCAAATTG+AGG + chr2_3:17408706-17408725 None:intergenic 35.0%
! TTTGACTTTGCTATGCAAGA+TGG + chr2_3:17408719-17408738 None:intergenic 35.0%
TGCATAGCAAAGTCAAAGAA+TGG - chr2_3:17408722-17408741 Msa0281820:CDS 35.0%
TTGGATTTCCTATAGTAGTC+GGG - chr2_3:17409063-17409082 Msa0281820:intron 35.0%
AATGGTCTAGACTTCATGTT+TGG + chr2_3:17409129-17409148 None:intergenic 35.0%
TCTAGTGTATGTTTGGATTG+TGG - chr2_3:17409152-17409171 Msa0281820:CDS 35.0%
TGTTTGGATTGTGGTAAGTT+TGG - chr2_3:17409161-17409180 Msa0281820:CDS 35.0%
TGAATCATGAAGGAAGTGAA+AGG - chr2_3:17409404-17409423 Msa0281820:CDS 35.0%
TCAAGGAAGTAATGTTCTCA+TGG + chr2_3:17409651-17409670 None:intergenic 35.0%
AAAGATAGGGACCAATTTGA+TGG - chr2_3:17409832-17409851 Msa0281820:intron 35.0%
ATCAAGATCCACATATTCTG+AGG + chr2_3:17410025-17410044 None:intergenic 35.0%
! TTCAAAAACAGATGGTGTTG+TGG + chr2_3:17410172-17410191 None:intergenic 35.0%
! GCTGTTTCAATGTCAAAGTT+TGG - chr2_3:17410201-17410220 Msa0281820:CDS 35.0%
GAACCAAAAGAAGCAACAAT+CGG + chr2_3:17408546-17408565 None:intergenic 35.0%
! GCAAGATGGATTCAAATTGA+GGG + chr2_3:17408705-17408724 None:intergenic 35.0%
! TGCAAGATGGATTCAAATTG+AGG + chr2_3:17408706-17408725 None:intergenic 35.0%
! TTTGACTTTGCTATGCAAGA+TGG + chr2_3:17408719-17408738 None:intergenic 35.0%
TGCATAGCAAAGTCAAAGAA+TGG - chr2_3:17408722-17408741 Msa0281820:CDS 35.0%
TTGGATTTCCTATAGTAGTC+GGG - chr2_3:17409063-17409082 Msa0281820:intron 35.0%
AATGGTCTAGACTTCATGTT+TGG + chr2_3:17409129-17409148 None:intergenic 35.0%
TCTAGTGTATGTTTGGATTG+TGG - chr2_3:17409152-17409171 Msa0281820:CDS 35.0%
TGTTTGGATTGTGGTAAGTT+TGG - chr2_3:17409161-17409180 Msa0281820:CDS 35.0%
TGAATCATGAAGGAAGTGAA+AGG - chr2_3:17409404-17409423 Msa0281820:CDS 35.0%
TCAAGGAAGTAATGTTCTCA+TGG + chr2_3:17409651-17409670 None:intergenic 35.0%
AAAGATAGGGACCAATTTGA+TGG - chr2_3:17409832-17409851 Msa0281820:intron 35.0%
ATCAAGATCCACATATTCTG+AGG + chr2_3:17410025-17410044 None:intergenic 35.0%
! TTCAAAAACAGATGGTGTTG+TGG + chr2_3:17410172-17410191 None:intergenic 35.0%
! GCTGTTTCAATGTCAAAGTT+TGG - chr2_3:17410201-17410220 Msa0281820:CDS 35.0%
TCTACAAGTCCCAACATTAG+AGG - chr2_3:17408630-17408649 Msa0281820:CDS 40.0%
! GCTTTTACGGTAGTAACCAA+AGG + chr2_3:17408680-17408699 None:intergenic 40.0%
! CAAATTGAGGGCAGCTTTTA+CGG + chr2_3:17408693-17408712 None:intergenic 40.0%
! AATCATGGAAGTGCAACCTT+AGG + chr2_3:17408780-17408799 None:intergenic 40.0%
ACTTCCATGATTGCTCTGTT+AGG - chr2_3:17408788-17408807 Msa0281820:CDS 40.0%
CTTCCATGATTGCTCTGTTA+GGG - chr2_3:17408789-17408808 Msa0281820:CDS 40.0%
! AACACTGATTGCTAGACTAC+AGG + chr2_3:17409092-17409111 None:intergenic 40.0%
CAAGTAAGCAAGACATTGAG+AGG - chr2_3:17409433-17409452 Msa0281820:intron 40.0%
! TCAGCACAAGAGACTGTTTT+AGG + chr2_3:17409505-17409524 None:intergenic 40.0%
CATATTGGTCAGTCCCTTAT+GGG - chr2_3:17409572-17409591 Msa0281820:intron 40.0%
TTCCATCTTTCCTCCCATAA+GGG + chr2_3:17409588-17409607 None:intergenic 40.0%
TTTCCATCTTTCCTCCCATA+AGG + chr2_3:17409589-17409608 None:intergenic 40.0%
AGAAGCTGAAATGGTACCAA+TGG - chr2_3:17409624-17409643 Msa0281820:intron 40.0%
GAAGCTGAAATGGTACCAAT+GGG - chr2_3:17409625-17409644 Msa0281820:intron 40.0%
! TATTCAGGGGCACATACTAT+TGG - chr2_3:17409883-17409902 Msa0281820:intron 40.0%
ACTATTGGAAGGACTACTTG+TGG - chr2_3:17409898-17409917 Msa0281820:intron 40.0%
! CTTGTGGCTCTATTCAATAC+AGG - chr2_3:17409914-17409933 Msa0281820:intron 40.0%
!! TTTGGATCTAATGATGGGTC+TGG + chr2_3:17409967-17409986 None:intergenic 40.0%
GAAACAAGTGGAGAAGTTCT+TGG + chr2_3:17410141-17410160 None:intergenic 40.0%
TTCTCCACTTGTTTCAGCAT+TGG - chr2_3:17410146-17410165 Msa0281820:CDS 40.0%
!! GGTGTCATTGATGTTCTTAC+TGG - chr2_3:17410222-17410241 Msa0281820:CDS 40.0%
GTTCTTACTGGAGATGAAGA+AGG - chr2_3:17410234-17410253 Msa0281820:CDS 40.0%
GAGATGAAGAAGGAGAAATC+AGG - chr2_3:17410244-17410263 Msa0281820:CDS 40.0%
TCTACAAGTCCCAACATTAG+AGG - chr2_3:17408630-17408649 Msa0281820:CDS 40.0%
! GCTTTTACGGTAGTAACCAA+AGG + chr2_3:17408680-17408699 None:intergenic 40.0%
! CAAATTGAGGGCAGCTTTTA+CGG + chr2_3:17408693-17408712 None:intergenic 40.0%
! AATCATGGAAGTGCAACCTT+AGG + chr2_3:17408780-17408799 None:intergenic 40.0%
ACTTCCATGATTGCTCTGTT+AGG - chr2_3:17408788-17408807 Msa0281820:CDS 40.0%
CTTCCATGATTGCTCTGTTA+GGG - chr2_3:17408789-17408808 Msa0281820:CDS 40.0%
! AACACTGATTGCTAGACTAC+AGG + chr2_3:17409092-17409111 None:intergenic 40.0%
CAAGTAAGCAAGACATTGAG+AGG - chr2_3:17409433-17409452 Msa0281820:intron 40.0%
! TCAGCACAAGAGACTGTTTT+AGG + chr2_3:17409505-17409524 None:intergenic 40.0%
CATATTGGTCAGTCCCTTAT+GGG - chr2_3:17409572-17409591 Msa0281820:intron 40.0%
TTCCATCTTTCCTCCCATAA+GGG + chr2_3:17409588-17409607 None:intergenic 40.0%
TTTCCATCTTTCCTCCCATA+AGG + chr2_3:17409589-17409608 None:intergenic 40.0%
AGAAGCTGAAATGGTACCAA+TGG - chr2_3:17409624-17409643 Msa0281820:intron 40.0%
GAAGCTGAAATGGTACCAAT+GGG - chr2_3:17409625-17409644 Msa0281820:intron 40.0%
! TATTCAGGGGCACATACTAT+TGG - chr2_3:17409883-17409902 Msa0281820:intron 40.0%
ACTATTGGAAGGACTACTTG+TGG - chr2_3:17409898-17409917 Msa0281820:intron 40.0%
! CTTGTGGCTCTATTCAATAC+AGG - chr2_3:17409914-17409933 Msa0281820:intron 40.0%
!! TTTGGATCTAATGATGGGTC+TGG + chr2_3:17409967-17409986 None:intergenic 40.0%
GAAACAAGTGGAGAAGTTCT+TGG + chr2_3:17410141-17410160 None:intergenic 40.0%
TTCTCCACTTGTTTCAGCAT+TGG - chr2_3:17410146-17410165 Msa0281820:CDS 40.0%
!! GGTGTCATTGATGTTCTTAC+TGG - chr2_3:17410222-17410241 Msa0281820:CDS 40.0%
GTTCTTACTGGAGATGAAGA+AGG - chr2_3:17410234-17410253 Msa0281820:CDS 40.0%
GAGATGAAGAAGGAGAAATC+AGG - chr2_3:17410244-17410263 Msa0281820:CDS 40.0%
CCAAAAGAAGCAACAATCGG+AGG + chr2_3:17408543-17408562 None:intergenic 45.0%
!! CCTCCGATTGTTGCTTCTTT+TGG - chr2_3:17408540-17408559 Msa0281820:CDS 45.0%
! CTTTAGCAGCTAGTCTCCTA+AGG - chr2_3:17408761-17408780 Msa0281820:CDS 45.0%
CATGATTGCTCTGTTAGGGT+GGG - chr2_3:17408793-17408812 Msa0281820:CDS 45.0%
ACAGGATTCCCGACTACTAT+AGG + chr2_3:17409074-17409093 None:intergenic 45.0%
!! TTGAGTTGGGTGGACCATAT+TGG - chr2_3:17409557-17409576 Msa0281820:intron 45.0%
CCATAAGGGACTGACCAATA+TGG + chr2_3:17409574-17409593 None:intergenic 45.0%
CCATATTGGTCAGTCCCTTA+TGG - chr2_3:17409571-17409590 Msa0281820:intron 45.0%
GTAATGTTCTCATGGCCCAT+TGG + chr2_3:17409643-17409662 None:intergenic 45.0%
CTGAGAGAACAACCAAGTCA+AGG + chr2_3:17409705-17409724 None:intergenic 45.0%
!! CTTGACTTGGTTGTTCTCTC+AGG - chr2_3:17409703-17409722 Msa0281820:intron 45.0%
TAGATGGGCCTCAGAATATG+TGG - chr2_3:17410014-17410033 Msa0281820:CDS 45.0%
CCAAAAGAAGCAACAATCGG+AGG + chr2_3:17408543-17408562 None:intergenic 45.0%
!! CCTCCGATTGTTGCTTCTTT+TGG - chr2_3:17408540-17408559 Msa0281820:CDS 45.0%
! CTTTAGCAGCTAGTCTCCTA+AGG - chr2_3:17408761-17408780 Msa0281820:CDS 45.0%
CATGATTGCTCTGTTAGGGT+GGG - chr2_3:17408793-17408812 Msa0281820:CDS 45.0%
ACAGGATTCCCGACTACTAT+AGG + chr2_3:17409074-17409093 None:intergenic 45.0%
!! TTGAGTTGGGTGGACCATAT+TGG - chr2_3:17409557-17409576 Msa0281820:intron 45.0%
CCATAAGGGACTGACCAATA+TGG + chr2_3:17409574-17409593 None:intergenic 45.0%
CCATATTGGTCAGTCCCTTA+TGG - chr2_3:17409571-17409590 Msa0281820:intron 45.0%
GTAATGTTCTCATGGCCCAT+TGG + chr2_3:17409643-17409662 None:intergenic 45.0%
CTGAGAGAACAACCAAGTCA+AGG + chr2_3:17409705-17409724 None:intergenic 45.0%
!! CTTGACTTGGTTGTTCTCTC+AGG - chr2_3:17409703-17409722 Msa0281820:intron 45.0%
TAGATGGGCCTCAGAATATG+TGG - chr2_3:17410014-17410033 Msa0281820:CDS 45.0%
CCACCCTAACAGAGCAATCA+TGG + chr2_3:17408795-17408814 None:intergenic 50.0%
CCATGATTGCTCTGTTAGGG+TGG - chr2_3:17408792-17408811 Msa0281820:CDS 50.0%
AAGGGATGCCACTGTTGAGT+TGG - chr2_3:17409543-17409562 Msa0281820:intron 50.0%
AGGGATGCCACTGTTGAGTT+GGG - chr2_3:17409544-17409563 Msa0281820:intron 50.0%
ATTGGTCAGTCCCTTATGGG+AGG - chr2_3:17409575-17409594 Msa0281820:intron 50.0%
GTCCCTTATGGGAGGAAAGA+TGG - chr2_3:17409583-17409602 Msa0281820:intron 50.0%
GTCAAGGACAGTCAAGCCTT+TGG + chr2_3:17409689-17409708 None:intergenic 50.0%
AGGCTTGACTGTCCTTGACT+TGG - chr2_3:17409690-17409709 Msa0281820:intron 50.0%
! CAGGGGCACATACTATTGGA+AGG - chr2_3:17409887-17409906 Msa0281820:intron 50.0%
! GGTCTGGTTTGCCTGTTCTT+TGG + chr2_3:17409951-17409970 None:intergenic 50.0%
GTGGCCAATGCTGAAACAAG+TGG + chr2_3:17410153-17410172 None:intergenic 50.0%
CCACCCTAACAGAGCAATCA+TGG + chr2_3:17408795-17408814 None:intergenic 50.0%
CCATGATTGCTCTGTTAGGG+TGG - chr2_3:17408792-17408811 Msa0281820:CDS 50.0%
AAGGGATGCCACTGTTGAGT+TGG - chr2_3:17409543-17409562 Msa0281820:intron 50.0%
AGGGATGCCACTGTTGAGTT+GGG - chr2_3:17409544-17409563 Msa0281820:intron 50.0%
ATTGGTCAGTCCCTTATGGG+AGG - chr2_3:17409575-17409594 Msa0281820:intron 50.0%
GTCCCTTATGGGAGGAAAGA+TGG - chr2_3:17409583-17409602 Msa0281820:intron 50.0%
GTCAAGGACAGTCAAGCCTT+TGG + chr2_3:17409689-17409708 None:intergenic 50.0%
AGGCTTGACTGTCCTTGACT+TGG - chr2_3:17409690-17409709 Msa0281820:intron 50.0%
! CAGGGGCACATACTATTGGA+AGG - chr2_3:17409887-17409906 Msa0281820:intron 50.0%
! GGTCTGGTTTGCCTGTTCTT+TGG + chr2_3:17409951-17409970 None:intergenic 50.0%
GTGGCCAATGCTGAAACAAG+TGG + chr2_3:17410153-17410172 None:intergenic 50.0%
!! GATGCCACTGTTGAGTTGGG+TGG - chr2_3:17409547-17409566 Msa0281820:intron 55.0%
TGGTCCACCCAACTCAACAG+TGG + chr2_3:17409554-17409573 None:intergenic 55.0%
!! GATGCCACTGTTGAGTTGGG+TGG - chr2_3:17409547-17409566 Msa0281820:intron 55.0%
TGGTCCACCCAACTCAACAG+TGG + chr2_3:17409554-17409573 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 17408526 17410296 17408526 ID=Msa0281820;Name=Msa0281820
chr2_3 mRNA 17408526 17410296 17408526 ID=Msa0281820-mRNA-1;Parent=Msa0281820;Name=Msa0281820-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|344
chr2_3 exon 17410012 17410296 17410012 ID=Msa0281820-mRNA-1:exon:7191;Parent=Msa0281820-mRNA-1
chr2_3 exon 17409098 17409440 17409098 ID=Msa0281820-mRNA-1:exon:7190;Parent=Msa0281820-mRNA-1
chr2_3 exon 17408526 17408932 17408526 ID=Msa0281820-mRNA-1:exon:7189;Parent=Msa0281820-mRNA-1
chr2_3 CDS 17410012 17410296 17410012 ID=Msa0281820-mRNA-1:cds;Parent=Msa0281820-mRNA-1
chr2_3 CDS 17409098 17409440 17409098 ID=Msa0281820-mRNA-1:cds;Parent=Msa0281820-mRNA-1
chr2_3 CDS 17408526 17408932 17408526 ID=Msa0281820-mRNA-1:cds;Parent=Msa0281820-mRNA-1
Gene Sequence

>Msa0281820

ATGTCAAAGTCTTACCTCCGATTGTTGCTTCTTTTGGTTCTTTACATAATTTCAGTTAATTCAACCCAACCTTATGATGAAAACTATGAGGATGCTGAGTTCACTCTACAAGTCCCAACATTAGAGGATACAGATTTGGATAATCTCTTATCCTTTGGTTACTACCGTAAAAGCTGCCCTCAATTTGAATCCATCTTGCATAGCAAAGTCAAAGAATGGATTAAGAAGGATTACACTTTAGCAGCTAGTCTCCTAAGGTTGCACTTCCATGATTGCTCTGTTAGGGGATGTGATGGCTCTATTTTATTGAATCATGAAGGAAGTGAAAGGAAATCACAAGTAAGCAAGACATTGAGAGGTTATGAAGTTATTGATGATATTAAGGCAGAGATAGAGAAACAATGTCCTAAAACAGTCTCTTGTGCTGATATTCTTACAACTGCTTCAAGGGATGCCACTGTTGAGTTGGGTGGACCATATTGGTCAGTCCCTTATGGGAGGAAAGATGGAAAAGTTTCTATTGACAAAGAAGCTGAAATGGTACCAATGGGCCATGAGAACATTACTTCCTTGATTGAATATTTTCAATCCAAAGGCTTGACTGTCCTTGACTTGGTTGTTCTCTCAGGGGCACATACTATTGGAAGGACTACTTGTGGCTCTATTCAATACAGGTTATACAACTACCAAAGAACAGGCAAACCAGACCCATCATTAGATCCAAAATACCTTAACTTCTTGCAAAGAAAATGTAGATGGGCCTCAGAATATGTGGATCTTGATGCAACAACACCAAAAAAATTTGACAGAATGTACTACATAAATCTCAAAAAGAAAATGGGATTGTTAACAACAGATCAATTGTTATATTCTGATCCAAGAACTTCTCCACTTGTTTCAGCATTGGCCACAACACCATCTGTTTTTGAACATCAATTTGCTGTTTCAATGTCAAAGTTTGGTGTCATTGATGTTCTTACTGGAGATGAAGAAGGAGAAATCAGGACCAATTGCAATTTTGTCAATGCTTATTGA
Protein sequence

>Msa0281820

MSKSYLRLLLLLVLYIISVNSTQPYDENYEDAEFTLQVPTLEDTDLDNLLSFGYYRKSCPQFESILHSKVKEWIKKDYTLAASLLRLHFHDCSVRGCDGSILLNHEGSERKSQVSKTLRGYEVIDDIKAEIEKQCPKTVSCADILTTASRDATVELGGPYWSVPYGRKDGKVSIDKEAEMVPMGHENITSLIEYFQSKGLTVLDLVVLSGAHTIGRTTCGSIQYRLYNYQRTGKPDPSLDPKYLNFLQRKCRWASEYVDLDATTPKKFDRMYYINLKKKMGLLTTDQLLYSDPRTSPLVSALATTPSVFEHQFAVSMSKFGVIDVLTGDEEGEIRTNCNFVNAY*