AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0244690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244690 MtrunA17_Chr2g0296621 94.767 344 17 1 1 344 1 343 0.0 663
Msa0244690 MtrunA17_Chr4g0076211 63.014 292 108 0 51 342 42 333 2.33e-141 403
Msa0244690 MtrunA17_Chr2g0292151 45.875 303 153 5 50 342 29 330 7.99e-83 255
Msa0244690 MtrunA17_Chr5g0404721 45.130 308 159 6 44 342 24 330 1.75e-81 251
Msa0244690 MtrunA17_Chr5g0402581 43.522 301 161 3 50 342 27 326 2.61e-81 250
Msa0244690 MtrunA17_Chr2g0292111 44.816 299 154 5 54 342 33 330 3.91e-81 251
Msa0244690 MtrunA17_Chr5g0402571 42.525 301 164 3 50 342 27 326 1.49e-80 248
Msa0244690 MtrunA17_Chr2g0291751 44.000 300 157 6 53 342 32 330 1.86e-79 246
Msa0244690 MtrunA17_Chr8g0372601 44.667 300 156 6 54 344 34 332 2.31e-78 243
Msa0244690 MtrunA17_Chr2g0292211 39.080 348 182 6 6 343 15 342 3.73e-78 243
Msa0244690 MtrunA17_Chr4g0046131 39.429 350 188 5 2 339 6 343 4.70e-78 243
Msa0244690 MtrunA17_Chr2g0292251 43.322 307 163 5 47 343 25 330 5.88e-78 243
Msa0244690 MtrunA17_Chr6g0460711 43.624 298 159 5 50 342 21 314 1.12e-77 241
Msa0244690 MtrunA17_Chr2g0292091 42.434 304 164 5 50 343 24 326 1.45e-77 241
Msa0244690 MtrunA17_Chr2g0322861 44.186 301 159 6 50 342 87 386 2.94e-77 242
Msa0244690 MtrunA17_Chr1g0194151 43.279 305 160 6 50 342 30 333 3.82e-77 240
Msa0244690 MtrunA17_Chr2g0292181 42.345 307 166 5 47 343 35 340 4.20e-77 241
Msa0244690 MtrunA17_Chr2g0292101 42.763 304 163 5 50 343 25 327 9.71e-77 239
Msa0244690 MtrunA17_Chr2g0292241 43.333 300 159 5 54 343 33 331 2.63e-76 238
Msa0244690 MtrunA17_Chr1g0194271 41.667 312 162 6 50 342 30 340 4.94e-76 237
Msa0244690 MtrunA17_Chr4g0063671 43.189 301 162 3 50 342 21 320 7.69e-76 236
Msa0244690 MtrunA17_Chr3g0128061 42.434 304 163 6 50 343 26 327 1.22e-75 236
Msa0244690 MtrunA17_Chr4g0024121 43.333 300 157 6 53 342 30 326 2.26e-75 235
Msa0244690 MtrunA17_Chr2g0279041 41.751 297 165 3 53 342 30 325 2.58e-75 235
Msa0244690 MtrunA17_Chr3g0106921 39.316 351 166 7 3 342 6 320 3.53e-75 234
Msa0244690 MtrunA17_Chr7g0268501 43.919 296 155 6 54 342 29 320 5.05e-75 234
Msa0244690 MtrunA17_Chr7g0268521 43.919 296 155 6 54 342 29 320 5.05e-75 234
Msa0244690 MtrunA17_Chr2g0292261 41.456 316 170 6 38 343 21 331 9.86e-75 234
Msa0244690 MtrunA17_Chr1g0188431 40.878 296 165 3 50 342 39 327 1.45e-74 233
Msa0244690 MtrunA17_Chr1g0175561 40.199 301 168 5 54 343 28 327 6.33e-74 231
Msa0244690 MtrunA17_Chr3g0114451 42.222 315 166 7 36 342 12 318 1.11e-73 230
Msa0244690 MtrunA17_Chr1g0164891 42.715 302 160 6 53 342 92 392 1.44e-73 233
Msa0244690 MtrunA17_Chr8g0371381 40.461 304 164 4 48 342 24 319 2.37e-73 229
Msa0244690 MtrunA17_Chr2g0320091 39.937 318 174 6 34 342 9 318 2.48e-73 229
Msa0244690 MtrunA17_Chr4g0013821 41.472 299 163 5 53 343 31 325 1.72e-72 228
Msa0244690 MtrunA17_Chr4g0038151 38.629 321 179 6 33 342 8 321 2.95e-72 227
Msa0244690 MtrunA17_Chr2g0292271 41.667 300 164 5 54 343 33 331 3.43e-72 228
Msa0244690 MtrunA17_Chr1g0155611 43.322 307 159 8 50 342 42 347 4.34e-72 227
Msa0244690 MtrunA17_Chr1g0157051 40.984 305 168 4 44 341 18 317 4.72e-72 226
Msa0244690 MtrunA17_Chr5g0432441 39.672 305 164 5 50 342 30 326 4.83e-72 226
Msa0244690 MtrunA17_Chr7g0258811 40.000 305 171 6 50 343 69 372 6.54e-72 228
Msa0244690 MtrunA17_Chr4g0038161 40.065 307 166 6 47 342 21 320 7.72e-72 226
Msa0244690 MtrunA17_Chr5g0400331 44.805 308 155 7 49 342 25 331 1.20e-71 226
Msa0244690 MtrunA17_Chr7g0254201 39.731 297 171 5 50 342 20 312 1.85e-71 224
Msa0244690 MtrunA17_Chr2g0320101 38.608 316 178 5 35 342 10 317 3.49e-71 224
Msa0244690 MtrunA17_Chr2g0320071 40.067 297 162 5 54 342 29 317 4.28e-71 224
Msa0244690 MtrunA17_Chr4g0070951 40.789 304 169 5 50 343 28 330 1.23e-70 223
Msa0244690 MtrunA17_Chr4g0013191 42.140 299 155 5 54 342 50 340 1.52e-70 223
Msa0244690 MtrunA17_Chr2g0292291 40.667 300 166 5 54 342 34 332 4.75e-70 222
Msa0244690 MtrunA17_Chr4g0013201 38.040 347 191 6 4 342 8 338 7.55e-70 221
Msa0244690 MtrunA17_Chr4g0043391 38.961 308 169 6 47 342 24 324 1.28e-69 220
Msa0244690 MtrunA17_Chr3g0129051 39.048 315 174 5 34 338 12 318 1.44e-69 220
Msa0244690 MtrunA17_Chr5g0405991 39.799 299 169 3 50 342 23 316 2.25e-69 219
Msa0244690 MtrunA17_Chr7g0224371 40.741 297 161 5 54 343 35 323 2.68e-69 219
Msa0244690 MtrunA17_Chr4g0038171 38.636 308 170 6 47 342 21 321 2.87e-69 219
Msa0244690 MtrunA17_Chr1g0213061 39.803 304 165 6 50 343 27 322 3.99e-69 219
Msa0244690 MtrunA17_Chr4g0013721 40.604 298 165 6 53 342 103 396 5.24e-69 221
Msa0244690 MtrunA17_Chr4g0068621 38.150 346 193 8 6 342 3 336 5.40e-69 219
Msa0244690 MtrunA17_Chr8g0364291 39.667 300 168 6 54 342 27 324 8.97e-69 218
Msa0244690 MtrunA17_Chr4g0013171 42.574 303 156 7 50 342 27 321 1.83e-68 217
Msa0244690 MtrunA17_Chr4g0072091 37.710 297 176 5 50 338 24 319 3.63e-68 216
Msa0244690 MtrunA17_Chr2g0320031 39.735 302 165 7 50 342 26 319 3.64e-68 216
Msa0244690 MtrunA17_Chr7g0244461 37.874 301 171 5 50 342 20 312 4.18e-68 216
Msa0244690 MtrunA17_Chr7g0254231 39.404 302 164 6 50 343 22 312 8.52e-68 215
Msa0244690 MtrunA17_Chr2g0320051 38.365 318 177 7 35 342 10 318 9.73e-68 215
Msa0244690 MtrunA17_Chr3g0129061 40.803 299 159 5 50 338 28 318 9.82e-68 215
Msa0244690 MtrunA17_Chr1g0204011 39.262 298 166 4 54 342 31 322 3.24e-67 214
Msa0244690 MtrunA17_Chr2g0299691 40.864 301 166 5 54 343 60 359 3.35e-67 215
Msa0244690 MtrunA17_Chr1g0197411 37.829 304 177 5 50 342 28 330 4.49e-67 214
Msa0244690 MtrunA17_Chr1g0181431 39.803 304 167 5 50 343 27 324 7.68e-67 213
Msa0244690 MtrunA17_Chr7g0244451 38.538 301 169 5 50 342 24 316 1.04e-66 213
Msa0244690 MtrunA17_Chr5g0401431 37.954 303 176 6 50 341 27 328 1.78e-66 212
Msa0244690 MtrunA17_Chr5g0438021 40.594 303 162 6 50 342 31 325 2.68e-66 212
Msa0244690 MtrunA17_Chr1g0181511 39.474 304 168 5 50 343 27 324 1.02e-65 210
Msa0244690 MtrunA17_Chr6g0467251 38.851 296 167 5 50 338 36 324 2.55e-65 210
Msa0244690 MtrunA17_Chr6g0467161 37.124 299 175 4 50 342 45 336 3.79e-65 209
Msa0244690 MtrunA17_Chr1g0148021 36.964 303 180 6 50 342 27 328 3.86e-65 209
Msa0244690 MtrunA17_Chr6g0477071 37.374 297 174 5 50 342 54 342 6.45e-65 209
Msa0244690 MtrunA17_Chr2g0320061 36.909 317 183 6 35 342 10 318 8.58e-65 207
Msa0244690 MtrunA17_Chr6g0451571 38.033 305 173 8 50 342 34 334 1.37e-64 207
Msa0244690 MtrunA17_Chr3g0106901 41.528 301 160 5 50 342 31 323 4.56e-64 206
Msa0244690 MtrunA17_Chr6g0467121 38.591 298 172 4 50 343 74 364 7.41e-64 207
Msa0244690 MtrunA17_Chr1g0181481 38.487 304 171 5 50 343 27 324 9.01e-64 205
Msa0244690 MtrunA17_Chr2g0316481 36.474 329 169 6 50 339 76 403 1.70e-62 204
Msa0244690 MtrunA17_Chr3g0129041 40.264 303 163 6 50 342 28 322 1.81e-62 202
Msa0244690 MtrunA17_Chr2g0278671 40.066 302 170 5 50 342 24 323 2.54e-62 201
Msa0244690 MtrunA17_Chr2g0316791 37.994 329 164 8 50 339 76 403 3.54e-62 204
Msa0244690 MtrunA17_Chr2g0316191 36.970 330 167 7 50 339 76 404 6.60e-62 203
Msa0244690 MtrunA17_Chr2g0316831 36.280 328 169 6 50 338 112 438 6.70e-62 204
Msa0244690 MtrunA17_Chr4g0013181 41.137 299 158 7 54 342 63 353 8.93e-62 201
Msa0244690 MtrunA17_Chr5g0432331 40.984 305 160 9 50 342 56 352 2.51e-60 197
Msa0244690 MtrunA17_Chr3g0107881 41.060 302 157 10 54 342 31 324 2.55e-60 196
Msa0244690 MtrunA17_Chr5g0413051 37.134 307 177 6 50 342 73 377 5.69e-60 197
Msa0244690 MtrunA17_Chr4g0074851 36.601 306 178 5 47 342 29 328 1.12e-59 195
Msa0244690 MtrunA17_Chr2g0311251 35.435 333 170 8 50 341 11 339 1.22e-59 195
Msa0244690 MtrunA17_Chr5g0421411 40.727 275 149 6 81 342 12 285 1.69e-59 193
Msa0244690 MtrunA17_Chr4g0075241 36.721 305 179 6 48 342 27 327 3.44e-59 193
Msa0244690 MtrunA17_Chr5g0432351 40.328 305 162 9 50 342 25 321 1.73e-58 191
Msa0244690 MtrunA17_Chr4g0053871 35.333 300 177 6 50 338 27 320 5.44e-58 190
Msa0244690 MtrunA17_Chr2g0279061 40.625 256 144 3 94 342 12 266 2.90e-57 186
Msa0244690 MtrunA17_Chr2g0329641 38.944 303 172 5 50 342 36 335 4.98e-57 188
Msa0244690 MtrunA17_Chr5g0432341 40.000 305 163 9 50 342 25 321 5.67e-57 187
Msa0244690 MtrunA17_Chr2g0311241 32.345 371 171 7 50 341 60 429 6.79e-56 188
Msa0244690 MtrunA17_Chr7g0225221 36.027 297 177 5 54 342 29 320 1.02e-55 184
Msa0244690 MtrunA17_Chr3g0136751 36.455 299 183 5 50 342 25 322 6.63e-49 167
Msa0244690 MtrunA17_Chr2g0316811 39.013 223 115 4 50 251 50 272 2.68e-45 157
Msa0244690 MtrunA17_Chr2g0292281 42.029 207 109 4 139 342 18 216 3.03e-44 152
Msa0244690 MtrunA17_Chr4g0004591 30.915 317 158 5 49 341 76 355 3.48e-41 147
Msa0244690 MtrunA17_Chr5g0432401 33.663 303 146 10 49 341 28 285 5.80e-37 134
Msa0244690 MtrunA17_Chr2g0316141 32.042 284 134 9 96 339 11 275 3.72e-35 129
Msa0244690 MtrunA17_Chr2g0316181 32.042 284 134 9 96 339 11 275 3.72e-35 129
Msa0244690 MtrunA17_Chr3g0114491 46.457 127 64 1 34 156 2 128 1.03e-32 119
Msa0244690 MtrunA17_Chr1g0181501 36.548 197 111 5 154 343 1 190 2.60e-29 111
Msa0244690 MtrunA17_Chr3g0114461 38.542 192 105 7 156 342 9 192 1.32e-28 109
Msa0244690 MtrunA17_Chr6g0468731 53.030 66 31 0 89 154 22 87 1.91e-19 82.0
Msa0244690 MtrunA17_Chr1g0181491 44.340 106 55 3 50 152 12 116 7.33e-19 82.0
Msa0244690 MtrunA17_Chr7g0254181 41.748 103 58 2 109 211 22 122 1.56e-18 81.6
Msa0244690 MtrunA17_Chr7g0254171 34.058 138 82 3 95 228 3 135 2.02e-16 75.1
Msa0244690 MtrunA17_Chr4g0013811 44.737 76 41 1 154 228 3 78 1.26e-14 68.6
Msa0244690 MtrunA17_Chr1g0196191 50.000 64 29 1 92 152 27 90 5.76e-14 68.9
Msa0244690 MtrunA17_Chr5g0432321 36.585 123 68 3 167 286 17 132 9.37e-14 67.4
Msa0244690 MtrunA17_Chr3g0104101 35.211 142 83 4 209 342 9 149 1.06e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244690 AT1G30870.1 60.667 300 116 2 46 343 47 346 7.03e-133 383
Msa0244690 AT3G03670.1 42.667 300 164 4 50 342 23 321 4.91e-88 268
Msa0244690 AT5G17820.1 41.638 293 168 3 50 342 24 313 6.69e-87 265
Msa0244690 AT5G17820.2 41.638 293 168 3 50 342 77 366 2.62e-85 262
Msa0244690 AT1G49570.1 40.688 349 184 8 5 340 10 348 1.64e-83 257
Msa0244690 AT1G05240.1 43.234 303 161 6 49 342 25 325 9.69e-83 254
Msa0244690 AT1G05250.1 43.234 303 161 6 49 342 25 325 9.69e-83 254
Msa0244690 AT2G18150.1 43.478 299 159 6 53 342 39 336 6.24e-82 253
Msa0244690 AT4G36430.1 44.333 300 157 7 53 343 33 331 7.93e-82 252
Msa0244690 AT5G15180.1 45.819 299 155 5 50 342 32 329 1.19e-80 249
Msa0244690 AT2G18140.1 42.994 314 160 7 47 342 23 335 1.19e-79 247
Msa0244690 AT4G11290.1 44.590 305 154 7 50 342 25 326 2.56e-79 245
Msa0244690 AT2G41480.1 43.564 303 162 3 48 342 27 328 8.58e-79 244
Msa0244690 AT1G05260.1 44.040 302 160 6 50 343 26 326 3.55e-78 243
Msa0244690 AT2G39040.1 44.118 306 157 6 50 342 46 350 4.55e-78 243
Msa0244690 AT5G64120.1 41.497 294 167 3 52 342 37 328 7.30e-78 242
Msa0244690 AT3G01190.1 45.485 299 154 6 50 342 26 321 8.16e-78 241
Msa0244690 AT2G38390.1 43.667 300 157 6 54 342 35 333 1.86e-77 241
Msa0244690 AT3G21770.1 43.434 297 159 6 50 338 29 324 5.16e-77 239
Msa0244690 AT5G66390.1 43.624 298 158 6 54 342 37 333 7.82e-77 239
Msa0244690 AT4G08770.1 43.137 306 161 7 50 343 24 328 1.68e-76 239
Msa0244690 AT4G16270.1 44.300 307 157 7 46 342 46 348 1.49e-75 236
Msa0244690 AT3G50990.1 42.384 302 164 6 50 342 41 341 2.45e-75 236
Msa0244690 AT4G08780.1 42.810 306 162 7 50 343 24 328 4.32e-75 235
Msa0244690 AT2G34060.1 44.371 302 156 5 50 339 42 343 3.58e-74 233
Msa0244690 AT2G38380.1 43.667 300 157 6 54 342 35 333 4.09e-74 233
Msa0244690 AT5G64100.1 41.497 294 166 5 53 342 40 331 5.40e-74 232
Msa0244690 AT5G19880.1 40.850 306 167 6 50 342 25 329 6.59e-74 232
Msa0244690 AT5G06720.1 39.333 300 171 5 54 343 36 334 8.04e-74 232
Msa0244690 AT5G06730.1 39.333 300 171 6 54 343 37 335 4.07e-73 231
Msa0244690 AT5G19890.1 41.196 301 166 4 50 342 30 327 1.26e-72 228
Msa0244690 AT3G49110.1 41.424 309 168 7 47 343 30 337 1.61e-72 229
Msa0244690 AT3G32980.1 42.715 302 160 6 54 343 35 335 2.23e-72 228
Msa0244690 AT3G49120.1 41.060 302 165 6 54 343 36 336 3.07e-72 228
Msa0244690 AT2G22420.1 42.088 297 160 6 54 342 27 319 8.03e-72 226
Msa0244690 AT5G05340.1 38.944 303 167 5 50 342 30 324 1.16e-71 226
Msa0244690 AT4G33420.1 41.216 296 164 3 50 342 37 325 2.24e-71 225
Msa0244690 AT4G33420.2 41.216 296 164 3 50 342 84 372 8.22e-71 225
Msa0244690 AT1G44970.1 42.475 299 161 6 54 342 49 346 1.08e-70 224
Msa0244690 AT5G39580.1 40.000 295 171 4 52 342 27 319 2.13e-69 220
Msa0244690 AT5G42180.1 36.494 348 179 6 3 341 2 316 2.50e-69 219
Msa0244690 AT1G71695.1 39.375 320 171 8 39 342 27 339 2.55e-69 221
Msa0244690 AT5G64110.1 40.741 297 166 5 53 342 37 330 2.23e-68 218
Msa0244690 AT5G51890.1 40.000 300 162 5 54 342 30 322 2.87e-68 217
Msa0244690 AT1G68850.1 39.739 307 170 6 50 342 30 335 5.01e-68 217
Msa0244690 AT4G30170.1 36.545 301 181 6 50 342 27 325 1.53e-67 215
Msa0244690 AT2G18980.1 37.874 301 177 6 50 342 25 323 7.17e-67 213
Msa0244690 AT2G35380.1 41.447 304 163 8 53 342 33 335 2.12e-66 213
Msa0244690 AT1G14550.1 42.295 305 155 8 50 342 26 321 2.21e-66 212
Msa0244690 AT2G24800.1 41.914 303 162 6 50 342 31 329 2.78e-65 209
Msa0244690 AT5G22410.1 38.851 296 172 5 50 338 28 321 2.82e-65 209
Msa0244690 AT4G25980.1 39.735 302 172 4 50 342 26 326 4.87e-65 209
Msa0244690 AT4G17690.1 37.124 299 172 6 54 342 30 322 1.08e-64 208
Msa0244690 AT1G77100.1 39.604 303 166 7 50 342 24 319 2.91e-64 206
Msa0244690 AT5G40150.1 38.284 303 171 6 50 342 32 328 5.37e-64 206
Msa0244690 AT4G26010.1 37.919 298 170 6 50 342 22 309 6.96e-64 205
Msa0244690 AT3G49960.1 36.184 304 182 5 50 342 27 329 8.49e-64 206
Msa0244690 AT4G26010.2 37.919 298 170 6 50 342 50 337 1.24e-63 206
Msa0244690 AT1G14540.1 39.404 302 167 7 50 342 21 315 1.55e-63 204
Msa0244690 AT3G28200.1 37.624 303 172 6 50 342 21 316 3.00e-63 204
Msa0244690 AT4G31760.1 39.803 304 166 6 50 342 29 326 3.91e-63 204
Msa0244690 AT5G58390.1 38.851 296 162 5 54 338 25 312 6.17e-63 203
Msa0244690 AT5G24070.1 37.171 304 179 4 50 343 35 336 6.38e-63 204
Msa0244690 AT5G47000.1 37.582 306 172 7 49 342 32 330 6.54e-63 204
Msa0244690 AT5G14130.1 37.000 300 181 5 50 342 32 330 8.34e-63 203
Msa0244690 AT5G14130.2 37.000 300 181 5 50 342 73 371 6.70e-62 202
Msa0244690 AT5G58400.1 36.061 330 191 6 25 342 4 325 1.29e-61 200
Msa0244690 AT2G37130.1 38.158 304 171 6 50 342 30 327 7.74e-61 198
Msa0244690 AT2G43480.1 35.604 323 190 5 30 342 21 335 8.96e-61 198
Msa0244690 AT4G33870.1 32.055 365 198 7 17 339 42 398 1.07e-60 200
Msa0244690 AT2G37130.2 38.079 302 170 6 52 342 1 296 1.22e-60 196
Msa0244690 AT4G37530.1 34.333 300 185 5 54 342 31 329 1.39e-59 195
Msa0244690 AT5G67400.1 34.375 320 197 6 34 342 12 329 4.60e-59 193
Msa0244690 AT4G37520.1 34.539 304 187 6 50 342 27 329 7.62e-59 193
Msa0244690 AT4G37520.2 34.539 304 184 7 50 342 27 326 1.16e-57 190
Msa0244690 AT1G34510.1 37.793 299 169 7 50 342 22 309 1.55e-57 189
Msa0244690 AT1G24110.1 39.542 306 171 7 50 344 22 324 4.47e-57 188
Msa0244690 AT4G21960.1 35.922 309 182 5 44 342 25 327 5.54e-57 188
Msa0244690 AT3G17070.1 36.808 307 175 7 50 342 38 339 2.01e-56 187
Msa0244690 AT4G37530.2 34.127 252 155 4 54 294 31 282 2.58e-50 169
Msa0244690 AT2G35380.2 40.506 237 130 6 116 342 12 247 9.11e-47 159
Msa0244690 AT2G24800.2 46.341 164 83 2 50 210 31 192 1.96e-41 145
Msa0244690 AT4G25980.2 45.732 164 88 1 50 212 71 234 4.65e-41 145
Msa0244690 AT5G39580.2 41.071 168 99 0 52 219 27 194 4.11e-40 141
Msa0244690 AT3G17070.2 34.866 261 151 7 96 342 21 276 3.21e-39 140
Msa0244690 AT3G42570.1 32.632 95 62 1 118 210 53 147 9.45e-11 60.1

Find 65 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAGAAGTTAAGGTATTT+TGG 0.131323 2_2:+23410087 None:intergenic
CATCCGATTGTTGCTTCTTT+TGG 0.214097 2_2:-23411624 Msa0244690:CDS
ACTTCCATGATTGCTCTGTT+AGG 0.266056 2_2:-23411376 Msa0244690:CDS
TGAAGTTATTGATGATATTA+AGG 0.280197 2_2:-23410610 Msa0244690:CDS
CCATATTGGTCAGTCCCTTA+TGG 0.281860 2_2:-23410498 Msa0244690:CDS
GGTGTCATTGATGTTCTTAC+TGG 0.290141 2_2:-23409847 Msa0244690:CDS
AACATTAGAGGATACAGATT+TGG 0.336587 2_2:-23411522 Msa0244690:CDS
TATTCAGGGGCACATACTAT+TGG 0.363846 2_2:-23410186 Msa0244690:intron
TCTTGCAAAGAAAATGTAGA+TGG 0.363928 2_2:-23410071 Msa0244690:CDS
TTGGATAATCTCTTATCCTT+TGG 0.369990 2_2:-23411503 Msa0244690:CDS
TCTACAAGTCCCAACATTAG+AGG 0.388107 2_2:-23411534 Msa0244690:CDS
GCTGTTTCAATGTCAAAGTT+TGG 0.390316 2_2:-23409868 Msa0244690:CDS
TTTCCATCTTTCCTCCCATA+AGG 0.401746 2_2:+23410483 None:intergenic
TTCCATCTTTCCTCCCATAA+GGG 0.402901 2_2:+23410484 None:intergenic
TTTGGATCTAATGATGGGTC+TGG 0.404975 2_2:+23410105 None:intergenic
CTTGACTTAGTTGTTCTCTC+AGG 0.406767 2_2:-23410366 Msa0244690:intron
CATATTGGTCAGTCCCTTAT+GGG 0.409021 2_2:-23410497 Msa0244690:CDS
AGCATTGACAAAATTGCAAT+TGG 0.413153 2_2:+23409801 None:intergenic
GTCAAGGACAGTCAAGCCTT+TGG 0.419581 2_2:+23410383 None:intergenic
TATTGACAAAGAAGCTGAAA+TGG 0.421889 2_2:-23410454 Msa0244690:CDS
ATATTCTTACAACTGCTTCA+AGG 0.425738 2_2:-23410545 Msa0244690:CDS
GAAACAAGTGGAGAAGTTCT+TGG 0.427170 2_2:+23409931 None:intergenic
CTTCCATGATTGCTCTGTTA+GGG 0.430268 2_2:-23411375 Msa0244690:intron
CCATAAGGGACTGACCAATA+TGG 0.445922 2_2:+23410498 None:intergenic
TTCTCCACTTGTTTCAGCAT+TGG 0.449242 2_2:-23409923 Msa0244690:CDS
GGTCTGGTTTGCCTGTTCCT+TGG 0.453569 2_2:+23410121 None:intergenic
CCACCCTAACAGAGCAATCA+TGG 0.454699 2_2:+23411372 None:intergenic
CTTGTGGCTCTATTCAATAC+AGG 0.457006 2_2:-23410155 Msa0244690:CDS
AGGGATGCCACTGTTGAGTT+GGG 0.457543 2_2:-23410525 Msa0244690:CDS
GTCCCTTATGGGAGGAAAGA+TGG 0.458270 2_2:-23410486 Msa0244690:CDS
AAATCTGTATCCTCTAATGT+TGG 0.458659 2_2:+23411524 None:intergenic
TTTGACTTTGCTATGCAAGA+TGG 0.467791 2_2:+23411448 None:intergenic
TGCATAGCAAAGTCAAAGAA+TGG 0.476889 2_2:-23411442 Msa0244690:CDS
AAGGGATGCCACTGTTGAGT+TGG 0.488094 2_2:-23410526 Msa0244690:CDS
AATCTGTATCCTCTAATGTT+GGG 0.489759 2_2:+23411525 None:intergenic
TGCAAGATGGATTCAAATTG+AGG 0.491467 2_2:+23411461 None:intergenic
TTGAGTTGGGTGGACCATAT+TGG 0.502726 2_2:-23410512 Msa0244690:CDS
AATCATGGAAGTGCAACCTT+AGG 0.505171 2_2:+23411387 None:intergenic
TTATACAACTACCAAGGAAC+AGG 0.505330 2_2:-23410132 Msa0244690:CDS
TATTCTTACAACTGCTTCAA+GGG 0.505713 2_2:-23410544 Msa0244690:CDS
CTTTAGCAGCTAGTCTCCTA+AGG 0.506408 2_2:-23411403 Msa0244690:CDS
AGAAGCTGAAATGGTACCAA+TGG 0.515929 2_2:-23410445 Msa0244690:CDS
GGATTGAAAATATTCAATCA+AGG 0.521519 2_2:+23410404 None:intergenic
GAGATGATGAAGGAGAAATC+AGG 0.533880 2_2:-23409825 Msa0244690:CDS
GAAGCTGAAATGGTACCAAT+GGG 0.535263 2_2:-23410444 Msa0244690:CDS
GAACCAAAAGAAGCAACAAT+CGG 0.537109 2_2:+23411621 None:intergenic
GCAAGATGGATTCAAATTGA+GGG 0.538287 2_2:+23411462 None:intergenic
ACCTTATGATGAAAACTATG+AGG 0.539825 2_2:-23411570 Msa0244690:CDS
TAGATGGGCCACAGAATATG+TGG 0.542434 2_2:-23410055 Msa0244690:CDS
GTAATGTTCGCATGGCCCAT+TGG 0.546489 2_2:+23410429 None:intergenic
AGTCAAAGAATGGATTAAGA+AGG 0.547241 2_2:-23411432 Msa0244690:CDS
CTTGCAAAGAAAATGTAGAT+GGG 0.598148 2_2:-23410070 Msa0244690:CDS
CAAGTAAGCAAGACATTGAG+AGG 0.601262 2_2:-23410636 Msa0244690:CDS
TGAATCATGAAGGAAGTGAA+AGG 0.602756 2_2:-23410665 Msa0244690:CDS
TCAAGGAAGTAATGTTCGCA+TGG 0.603873 2_2:+23410421 None:intergenic
GTTCTTACTGGAGATGATGA+AGG 0.609230 2_2:-23409835 Msa0244690:CDS
CAGGGGCACATACTATTGGA+AGG 0.617965 2_2:-23410182 Msa0244690:CDS
CTGAGAGAACAACTAAGTCA+AGG 0.638471 2_2:+23410367 None:intergenic
ATCAAGATCCACATATTCTG+TGG 0.652227 2_2:+23410047 None:intergenic
ACTATTGGAAGGACTACTTG+TGG 0.665121 2_2:-23410171 Msa0244690:CDS
GATGCCACTGTTGAGTTGGG+TGG 0.668142 2_2:-23410522 Msa0244690:CDS
GTGGCCAATGCTGAAACAAG+TGG 0.669223 2_2:+23409919 None:intergenic
ATTGGTCAGTCCCTTATGGG+AGG 0.681509 2_2:-23410494 Msa0244690:CDS
TACAGGTTATACAACTACCA+AGG 0.683064 2_2:-23410138 Msa0244690:CDS
TGGTCCACCCAACTCAACAG+TGG 0.695362 2_2:+23410518 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAATATAGAAAACAAT+TGG + chr2_2:23411230-23411249 None:intergenic 10.0%
!! ATATTAATATAGAAAACAAT+TGG + chr2_2:23411230-23411249 None:intergenic 10.0%
!!! ATATACTTATTTGAACTTTT+TGG - chr2_2:23410709-23410728 Msa0244690:intron 15.0%
!!! TGTTTTCTATATTAATATTC+AGG - chr2_2:23411232-23411251 Msa0244690:intron 15.0%
!!! GTTTTCTATATTAATATTCA+GGG - chr2_2:23411233-23411252 Msa0244690:intron 15.0%
!!! TTTTCTATATTAATATTCAG+GGG - chr2_2:23411234-23411253 Msa0244690:intron 15.0%
!! ATAAATCTCAAAAAGAAAAT+GGG - chr2_2:23411445-23411464 Msa0244690:CDS 15.0%
!!! ATATACTTATTTGAACTTTT+TGG - chr2_2:23410709-23410728 Msa0244690:intron 15.0%
!!! TGTTTTCTATATTAATATTC+AGG - chr2_2:23411232-23411251 Msa0244690:intron 15.0%
!!! GTTTTCTATATTAATATTCA+GGG - chr2_2:23411233-23411252 Msa0244690:intron 15.0%
!!! TTTTCTATATTAATATTCAG+GGG - chr2_2:23411234-23411253 Msa0244690:intron 15.0%
!! ATAAATCTCAAAAAGAAAAT+GGG - chr2_2:23411445-23411464 Msa0244690:CDS 15.0%
!! ATGCAAAACATATAAATACA+CGG + chr2_2:23410295-23410314 None:intergenic 20.0%
!!! ATGTTTTGCATTATTTTTCA+TGG - chr2_2:23410304-23410323 Msa0244690:intron 20.0%
!! TATTAGATTAAGTGCATATT+TGG - chr2_2:23410605-23410624 Msa0244690:CDS 20.0%
!!! TTTTTGGCTGTATTTTTAAA+GGG - chr2_2:23410725-23410744 Msa0244690:intron 20.0%
!!! TCTATTTTATTGAATCATGA+AGG - chr2_2:23410758-23410777 Msa0244690:intron 20.0%
!!! TGAAGTTATTGATGATATTA+AGG - chr2_2:23410823-23410842 Msa0244690:intron 20.0%
!!! ATTGAATATTTTCAATCCAA+AGG - chr2_2:23411034-23411053 Msa0244690:intron 20.0%
!!! TACATTCTGTCAAATTTTTT+TGG + chr2_2:23411421-23411440 None:intergenic 20.0%
!! CATAAATCTCAAAAAGAAAA+TGG - chr2_2:23411444-23411463 Msa0244690:CDS 20.0%
!! ATGCAAAACATATAAATACA+CGG + chr2_2:23410295-23410314 None:intergenic 20.0%
!!! ATGTTTTGCATTATTTTTCA+TGG - chr2_2:23410304-23410323 Msa0244690:intron 20.0%
!! TATTAGATTAAGTGCATATT+TGG - chr2_2:23410605-23410624 Msa0244690:CDS 20.0%
!!! TTTTTGGCTGTATTTTTAAA+GGG - chr2_2:23410725-23410744 Msa0244690:intron 20.0%
!!! TCTATTTTATTGAATCATGA+AGG - chr2_2:23410758-23410777 Msa0244690:intron 20.0%
!!! TGAAGTTATTGATGATATTA+AGG - chr2_2:23410823-23410842 Msa0244690:intron 20.0%
!!! ATTGAATATTTTCAATCCAA+AGG - chr2_2:23411034-23411053 Msa0244690:intron 20.0%
!!! TACATTCTGTCAAATTTTTT+TGG + chr2_2:23411421-23411440 None:intergenic 20.0%
!! CATAAATCTCAAAAAGAAAA+TGG - chr2_2:23411444-23411463 Msa0244690:CDS 20.0%
!! ATAGTTTTCATCATAAGGTT+GGG + chr2_2:23409862-23409881 None:intergenic 25.0%
! AGAAATCATCTCATCAAAAT+CGG + chr2_2:23410155-23410174 None:intergenic 25.0%
! ACATATAAATACACGGATAA+TGG + chr2_2:23410288-23410307 None:intergenic 25.0%
!!! TGCATTATTTTTCATGGATT+TGG - chr2_2:23410310-23410329 Msa0244690:intron 25.0%
!! TTCATGTTTGGTAATTTGAT+TGG + chr2_2:23410383-23410402 None:intergenic 25.0%
! TAAACATACACTAGAGTAAA+TGG + chr2_2:23410413-23410432 None:intergenic 25.0%
!! ATTTTCAACAAAATCACAGT+CGG - chr2_2:23410502-23410521 Msa0244690:CDS 25.0%
!!! TGCATTTTTAAAATCACAGT+CGG + chr2_2:23410582-23410601 None:intergenic 25.0%
!!! CTTTTTGGCTGTATTTTTAA+AGG - chr2_2:23410724-23410743 Msa0244690:intron 25.0%
! GGATTGAAAATATTCAATCA+AGG + chr2_2:23411032-23411051 None:intergenic 25.0%
!! ATTTTCTTTGCAAGAAGTTA+AGG + chr2_2:23411357-23411376 None:intergenic 25.0%
! AATTGATGTTCAAAAACAGA+TGG + chr2_2:23411544-23411563 None:intergenic 25.0%
!! ATAGTTTTCATCATAAGGTT+GGG + chr2_2:23409862-23409881 None:intergenic 25.0%
! AGAAATCATCTCATCAAAAT+CGG + chr2_2:23410155-23410174 None:intergenic 25.0%
! ACATATAAATACACGGATAA+TGG + chr2_2:23410288-23410307 None:intergenic 25.0%
!!! TGCATTATTTTTCATGGATT+TGG - chr2_2:23410310-23410329 Msa0244690:intron 25.0%
!! TTCATGTTTGGTAATTTGAT+TGG + chr2_2:23410383-23410402 None:intergenic 25.0%
! TAAACATACACTAGAGTAAA+TGG + chr2_2:23410413-23410432 None:intergenic 25.0%
!! ATTTTCAACAAAATCACAGT+CGG - chr2_2:23410502-23410521 Msa0244690:CDS 25.0%
!!! TGCATTTTTAAAATCACAGT+CGG + chr2_2:23410582-23410601 None:intergenic 25.0%
!!! CTTTTTGGCTGTATTTTTAA+AGG - chr2_2:23410724-23410743 Msa0244690:intron 25.0%
! GGATTGAAAATATTCAATCA+AGG + chr2_2:23411032-23411051 None:intergenic 25.0%
!! ATTTTCTTTGCAAGAAGTTA+AGG + chr2_2:23411357-23411376 None:intergenic 25.0%
! AATTGATGTTCAAAAACAGA+TGG + chr2_2:23411544-23411563 None:intergenic 25.0%
! CATAGTTTTCATCATAAGGT+TGG + chr2_2:23409863-23409882 None:intergenic 30.0%
ACCTTATGATGAAAACTATG+AGG - chr2_2:23409863-23409882 Msa0244690:CDS 30.0%
! TCCTCATAGTTTTCATCATA+AGG + chr2_2:23409867-23409886 None:intergenic 30.0%
AATCTGTATCCTCTAATGTT+GGG + chr2_2:23409911-23409930 None:intergenic 30.0%
AAATCTGTATCCTCTAATGT+TGG + chr2_2:23409912-23409931 None:intergenic 30.0%
AACATTAGAGGATACAGATT+TGG - chr2_2:23409911-23409930 Msa0244690:CDS 30.0%
TTGGATAATCTCTTATCCTT+TGG - chr2_2:23409930-23409949 Msa0244690:CDS 30.0%
!! AGTCAAAGAATGGATTAAGA+AGG - chr2_2:23410001-23410020 Msa0244690:CDS 30.0%
TTTGGATTTCCTATAGTAGT+CGG - chr2_2:23410328-23410347 Msa0244690:intron 30.0%
TCTAGTGTATGTTTAGATTG+TGG - chr2_2:23410418-23410437 Msa0244690:CDS 30.0%
TGTTTAGATTGTGGTAAGTT+TGG - chr2_2:23410427-23410446 Msa0244690:CDS 30.0%
ATCATTCCAAATATCACAGT+CGG + chr2_2:23410638-23410657 None:intergenic 30.0%
!! GTATTTTTAAAGGGATGTGA+TGG - chr2_2:23410734-23410753 Msa0244690:intron 30.0%
ATATTCTTACAACTGCTTCA+AGG - chr2_2:23410888-23410907 Msa0244690:intron 30.0%
TATTCTTACAACTGCTTCAA+GGG - chr2_2:23410889-23410908 Msa0244690:intron 30.0%
TATTGACAAAGAAGCTGAAA+TGG - chr2_2:23410979-23410998 Msa0244690:intron 30.0%
GAGAATGACTTACAAAGATA+TGG - chr2_2:23411183-23411202 Msa0244690:intron 30.0%
AAAGATATGGACCAATTTGA+TGG - chr2_2:23411196-23411215 Msa0244690:intron 30.0%
TGGTTAGTAAACCATCAAAT+TGG + chr2_2:23411210-23411229 None:intergenic 30.0%
!! GGTATTTTGGATCTAATGAT+GGG + chr2_2:23411336-23411355 None:intergenic 30.0%
!! AGGTATTTTGGATCTAATGA+TGG + chr2_2:23411337-23411356 None:intergenic 30.0%
!! TGCAAGAAGTTAAGGTATTT+TGG + chr2_2:23411349-23411368 None:intergenic 30.0%
TCTTGCAAAGAAAATGTAGA+TGG - chr2_2:23411362-23411381 Msa0244690:intron 30.0%
CTTGCAAAGAAAATGTAGAT+GGG - chr2_2:23411363-23411382 Msa0244690:intron 30.0%
!! AGCATTGACAAAATTGCAAT+TGG + chr2_2:23411635-23411654 None:intergenic 30.0%
! CATAGTTTTCATCATAAGGT+TGG + chr2_2:23409863-23409882 None:intergenic 30.0%
ACCTTATGATGAAAACTATG+AGG - chr2_2:23409863-23409882 Msa0244690:CDS 30.0%
! TCCTCATAGTTTTCATCATA+AGG + chr2_2:23409867-23409886 None:intergenic 30.0%
AATCTGTATCCTCTAATGTT+GGG + chr2_2:23409911-23409930 None:intergenic 30.0%
AAATCTGTATCCTCTAATGT+TGG + chr2_2:23409912-23409931 None:intergenic 30.0%
AACATTAGAGGATACAGATT+TGG - chr2_2:23409911-23409930 Msa0244690:CDS 30.0%
TTGGATAATCTCTTATCCTT+TGG - chr2_2:23409930-23409949 Msa0244690:CDS 30.0%
!! AGTCAAAGAATGGATTAAGA+AGG - chr2_2:23410001-23410020 Msa0244690:CDS 30.0%
TTTGGATTTCCTATAGTAGT+CGG - chr2_2:23410328-23410347 Msa0244690:intron 30.0%
TCTAGTGTATGTTTAGATTG+TGG - chr2_2:23410418-23410437 Msa0244690:CDS 30.0%
TGTTTAGATTGTGGTAAGTT+TGG - chr2_2:23410427-23410446 Msa0244690:CDS 30.0%
ATCATTCCAAATATCACAGT+CGG + chr2_2:23410638-23410657 None:intergenic 30.0%
!! GTATTTTTAAAGGGATGTGA+TGG - chr2_2:23410734-23410753 Msa0244690:intron 30.0%
ATATTCTTACAACTGCTTCA+AGG - chr2_2:23410888-23410907 Msa0244690:intron 30.0%
TATTCTTACAACTGCTTCAA+GGG - chr2_2:23410889-23410908 Msa0244690:intron 30.0%
TATTGACAAAGAAGCTGAAA+TGG - chr2_2:23410979-23410998 Msa0244690:intron 30.0%
GAGAATGACTTACAAAGATA+TGG - chr2_2:23411183-23411202 Msa0244690:intron 30.0%
AAAGATATGGACCAATTTGA+TGG - chr2_2:23411196-23411215 Msa0244690:intron 30.0%
TGGTTAGTAAACCATCAAAT+TGG + chr2_2:23411210-23411229 None:intergenic 30.0%
!! GGTATTTTGGATCTAATGAT+GGG + chr2_2:23411336-23411355 None:intergenic 30.0%
!! AGGTATTTTGGATCTAATGA+TGG + chr2_2:23411337-23411356 None:intergenic 30.0%
!! TGCAAGAAGTTAAGGTATTT+TGG + chr2_2:23411349-23411368 None:intergenic 30.0%
TCTTGCAAAGAAAATGTAGA+TGG - chr2_2:23411362-23411381 Msa0244690:intron 30.0%
CTTGCAAAGAAAATGTAGAT+GGG - chr2_2:23411363-23411382 Msa0244690:intron 30.0%
!! AGCATTGACAAAATTGCAAT+TGG + chr2_2:23411635-23411654 None:intergenic 30.0%
GAACCAAAAGAAGCAACAAT+CGG + chr2_2:23409815-23409834 None:intergenic 35.0%
! GCAAGATGGATTCAAATTGA+GGG + chr2_2:23409974-23409993 None:intergenic 35.0%
! TGCAAGATGGATTCAAATTG+AGG + chr2_2:23409975-23409994 None:intergenic 35.0%
! TTTGACTTTGCTATGCAAGA+TGG + chr2_2:23409988-23410007 None:intergenic 35.0%
TGCATAGCAAAGTCAAAGAA+TGG - chr2_2:23409991-23410010 Msa0244690:CDS 35.0%
TTGGATTTCCTATAGTAGTC+GGG - chr2_2:23410329-23410348 Msa0244690:intron 35.0%
AATGGTCTAGACTTCATGTT+TGG + chr2_2:23410395-23410414 None:intergenic 35.0%
CACGTGTATGTTTGCATATT+TGG + chr2_2:23410535-23410554 None:intergenic 35.0%
CACGTGATTAAGTGCATATT+TGG - chr2_2:23410549-23410568 Msa0244690:CDS 35.0%
TGAATCATGAAGGAAGTGAA+AGG - chr2_2:23410768-23410787 Msa0244690:intron 35.0%
TACAGGTTATACAACTACCA+AGG - chr2_2:23411295-23411314 Msa0244690:intron 35.0%
TTATACAACTACCAAGGAAC+AGG - chr2_2:23411301-23411320 Msa0244690:intron 35.0%
ATCAAGATCCACATATTCTG+TGG + chr2_2:23411389-23411408 None:intergenic 35.0%
! TTCAAAAACAGATGGTGTTG+TGG + chr2_2:23411536-23411555 None:intergenic 35.0%
! GCTGTTTCAATGTCAAAGTT+TGG - chr2_2:23411565-23411584 Msa0244690:CDS 35.0%
GAACCAAAAGAAGCAACAAT+CGG + chr2_2:23409815-23409834 None:intergenic 35.0%
! GCAAGATGGATTCAAATTGA+GGG + chr2_2:23409974-23409993 None:intergenic 35.0%
! TGCAAGATGGATTCAAATTG+AGG + chr2_2:23409975-23409994 None:intergenic 35.0%
! TTTGACTTTGCTATGCAAGA+TGG + chr2_2:23409988-23410007 None:intergenic 35.0%
TGCATAGCAAAGTCAAAGAA+TGG - chr2_2:23409991-23410010 Msa0244690:CDS 35.0%
TTGGATTTCCTATAGTAGTC+GGG - chr2_2:23410329-23410348 Msa0244690:intron 35.0%
AATGGTCTAGACTTCATGTT+TGG + chr2_2:23410395-23410414 None:intergenic 35.0%
CACGTGTATGTTTGCATATT+TGG + chr2_2:23410535-23410554 None:intergenic 35.0%
CACGTGATTAAGTGCATATT+TGG - chr2_2:23410549-23410568 Msa0244690:CDS 35.0%
TGAATCATGAAGGAAGTGAA+AGG - chr2_2:23410768-23410787 Msa0244690:intron 35.0%
TACAGGTTATACAACTACCA+AGG - chr2_2:23411295-23411314 Msa0244690:intron 35.0%
TTATACAACTACCAAGGAAC+AGG - chr2_2:23411301-23411320 Msa0244690:intron 35.0%
ATCAAGATCCACATATTCTG+TGG + chr2_2:23411389-23411408 None:intergenic 35.0%
! TTCAAAAACAGATGGTGTTG+TGG + chr2_2:23411536-23411555 None:intergenic 35.0%
! GCTGTTTCAATGTCAAAGTT+TGG - chr2_2:23411565-23411584 Msa0244690:CDS 35.0%
!! CATCCGATTGTTGCTTCTTT+TGG - chr2_2:23409809-23409828 Msa0244690:CDS 40.0%
TCTACAAGTCCCAACATTAG+AGG - chr2_2:23409899-23409918 Msa0244690:CDS 40.0%
! GCTTTTACGGTAGTAACCAA+AGG + chr2_2:23409949-23409968 None:intergenic 40.0%
! CAAATTGAGGGCAGCTTTTA+CGG + chr2_2:23409962-23409981 None:intergenic 40.0%
! AATCATGGAAGTGCAACCTT+AGG + chr2_2:23410049-23410068 None:intergenic 40.0%
ACTTCCATGATTGCTCTGTT+AGG - chr2_2:23410057-23410076 Msa0244690:CDS 40.0%
CTTCCATGATTGCTCTGTTA+GGG - chr2_2:23410058-23410077 Msa0244690:CDS 40.0%
! AACACTGATTGCTAGACTAC+AGG + chr2_2:23410358-23410377 None:intergenic 40.0%
! ATGATGCCGACTGTGATATT+TGG - chr2_2:23410629-23410648 Msa0244690:CDS 40.0%
ATCCCTTACCAAATGACAGT+CGG + chr2_2:23410662-23410681 None:intergenic 40.0%
CAAGTAAGCAAGACATTGAG+AGG - chr2_2:23410797-23410816 Msa0244690:intron 40.0%
! TCAGCACAAGAGACTGTTTT+AGG + chr2_2:23410869-23410888 None:intergenic 40.0%
CATATTGGTCAGTCCCTTAT+GGG - chr2_2:23410936-23410955 Msa0244690:intron 40.0%
TTCCATCTTTCCTCCCATAA+GGG + chr2_2:23410952-23410971 None:intergenic 40.0%
TTTCCATCTTTCCTCCCATA+AGG + chr2_2:23410953-23410972 None:intergenic 40.0%
AGAAGCTGAAATGGTACCAA+TGG - chr2_2:23410988-23411007 Msa0244690:intron 40.0%
GAAGCTGAAATGGTACCAAT+GGG - chr2_2:23410989-23411008 Msa0244690:intron 40.0%
TCAAGGAAGTAATGTTCGCA+TGG + chr2_2:23411015-23411034 None:intergenic 40.0%
CTGAGAGAACAACTAAGTCA+AGG + chr2_2:23411069-23411088 None:intergenic 40.0%
CTTGACTTAGTTGTTCTCTC+AGG - chr2_2:23411067-23411086 Msa0244690:intron 40.0%
! TATTCAGGGGCACATACTAT+TGG - chr2_2:23411247-23411266 Msa0244690:intron 40.0%
ACTATTGGAAGGACTACTTG+TGG - chr2_2:23411262-23411281 Msa0244690:intron 40.0%
! CTTGTGGCTCTATTCAATAC+AGG - chr2_2:23411278-23411297 Msa0244690:intron 40.0%
!! TTTGGATCTAATGATGGGTC+TGG + chr2_2:23411331-23411350 None:intergenic 40.0%
GAAACAAGTGGAGAAGTTCT+TGG + chr2_2:23411505-23411524 None:intergenic 40.0%
TTCTCCACTTGTTTCAGCAT+TGG - chr2_2:23411510-23411529 Msa0244690:CDS 40.0%
!! GGTGTCATTGATGTTCTTAC+TGG - chr2_2:23411586-23411605 Msa0244690:CDS 40.0%
GTTCTTACTGGAGATGATGA+AGG - chr2_2:23411598-23411617 Msa0244690:CDS 40.0%
GAGATGATGAAGGAGAAATC+AGG - chr2_2:23411608-23411627 Msa0244690:CDS 40.0%
!! CATCCGATTGTTGCTTCTTT+TGG - chr2_2:23409809-23409828 Msa0244690:CDS 40.0%
TCTACAAGTCCCAACATTAG+AGG - chr2_2:23409899-23409918 Msa0244690:CDS 40.0%
! GCTTTTACGGTAGTAACCAA+AGG + chr2_2:23409949-23409968 None:intergenic 40.0%
! CAAATTGAGGGCAGCTTTTA+CGG + chr2_2:23409962-23409981 None:intergenic 40.0%
! AATCATGGAAGTGCAACCTT+AGG + chr2_2:23410049-23410068 None:intergenic 40.0%
ACTTCCATGATTGCTCTGTT+AGG - chr2_2:23410057-23410076 Msa0244690:CDS 40.0%
CTTCCATGATTGCTCTGTTA+GGG - chr2_2:23410058-23410077 Msa0244690:CDS 40.0%
! AACACTGATTGCTAGACTAC+AGG + chr2_2:23410358-23410377 None:intergenic 40.0%
! ATGATGCCGACTGTGATATT+TGG - chr2_2:23410629-23410648 Msa0244690:CDS 40.0%
ATCCCTTACCAAATGACAGT+CGG + chr2_2:23410662-23410681 None:intergenic 40.0%
CAAGTAAGCAAGACATTGAG+AGG - chr2_2:23410797-23410816 Msa0244690:intron 40.0%
! TCAGCACAAGAGACTGTTTT+AGG + chr2_2:23410869-23410888 None:intergenic 40.0%
CATATTGGTCAGTCCCTTAT+GGG - chr2_2:23410936-23410955 Msa0244690:intron 40.0%
TTCCATCTTTCCTCCCATAA+GGG + chr2_2:23410952-23410971 None:intergenic 40.0%
TTTCCATCTTTCCTCCCATA+AGG + chr2_2:23410953-23410972 None:intergenic 40.0%
AGAAGCTGAAATGGTACCAA+TGG - chr2_2:23410988-23411007 Msa0244690:intron 40.0%
GAAGCTGAAATGGTACCAAT+GGG - chr2_2:23410989-23411008 Msa0244690:intron 40.0%
TCAAGGAAGTAATGTTCGCA+TGG + chr2_2:23411015-23411034 None:intergenic 40.0%
CTGAGAGAACAACTAAGTCA+AGG + chr2_2:23411069-23411088 None:intergenic 40.0%
CTTGACTTAGTTGTTCTCTC+AGG - chr2_2:23411067-23411086 Msa0244690:intron 40.0%
! TATTCAGGGGCACATACTAT+TGG - chr2_2:23411247-23411266 Msa0244690:intron 40.0%
ACTATTGGAAGGACTACTTG+TGG - chr2_2:23411262-23411281 Msa0244690:intron 40.0%
! CTTGTGGCTCTATTCAATAC+AGG - chr2_2:23411278-23411297 Msa0244690:intron 40.0%
!! TTTGGATCTAATGATGGGTC+TGG + chr2_2:23411331-23411350 None:intergenic 40.0%
GAAACAAGTGGAGAAGTTCT+TGG + chr2_2:23411505-23411524 None:intergenic 40.0%
TTCTCCACTTGTTTCAGCAT+TGG - chr2_2:23411510-23411529 Msa0244690:CDS 40.0%
!! GGTGTCATTGATGTTCTTAC+TGG - chr2_2:23411586-23411605 Msa0244690:CDS 40.0%
GTTCTTACTGGAGATGATGA+AGG - chr2_2:23411598-23411617 Msa0244690:CDS 40.0%
GAGATGATGAAGGAGAAATC+AGG - chr2_2:23411608-23411627 Msa0244690:CDS 40.0%
! CTTTAGCAGCTAGTCTCCTA+AGG - chr2_2:23410030-23410049 Msa0244690:CDS 45.0%
CATGATTGCTCTGTTAGGGT+GGG - chr2_2:23410062-23410081 Msa0244690:CDS 45.0%
ACAGGATTCCCGACTACTAT+AGG + chr2_2:23410340-23410359 None:intergenic 45.0%
! GAATGATGCCGACTGTCATT+TGG - chr2_2:23410651-23410670 Msa0244690:CDS 45.0%
! ATGCCGACTGTCATTTGGTA+AGG - chr2_2:23410656-23410675 Msa0244690:CDS 45.0%
! TGCCGACTGTCATTTGGTAA+GGG - chr2_2:23410657-23410676 Msa0244690:CDS 45.0%
!! TTGAGTTGGGTGGACCATAT+TGG - chr2_2:23410921-23410940 Msa0244690:intron 45.0%
CCATAAGGGACTGACCAATA+TGG + chr2_2:23410938-23410957 None:intergenic 45.0%
CCATATTGGTCAGTCCCTTA+TGG - chr2_2:23410935-23410954 Msa0244690:intron 45.0%
TAGATGGGCCACAGAATATG+TGG - chr2_2:23411378-23411397 Msa0244690:CDS 45.0%
! CTTTAGCAGCTAGTCTCCTA+AGG - chr2_2:23410030-23410049 Msa0244690:CDS 45.0%
CATGATTGCTCTGTTAGGGT+GGG - chr2_2:23410062-23410081 Msa0244690:CDS 45.0%
ACAGGATTCCCGACTACTAT+AGG + chr2_2:23410340-23410359 None:intergenic 45.0%
! GAATGATGCCGACTGTCATT+TGG - chr2_2:23410651-23410670 Msa0244690:CDS 45.0%
! ATGCCGACTGTCATTTGGTA+AGG - chr2_2:23410656-23410675 Msa0244690:CDS 45.0%
! TGCCGACTGTCATTTGGTAA+GGG - chr2_2:23410657-23410676 Msa0244690:CDS 45.0%
!! TTGAGTTGGGTGGACCATAT+TGG - chr2_2:23410921-23410940 Msa0244690:intron 45.0%
CCATAAGGGACTGACCAATA+TGG + chr2_2:23410938-23410957 None:intergenic 45.0%
CCATATTGGTCAGTCCCTTA+TGG - chr2_2:23410935-23410954 Msa0244690:intron 45.0%
TAGATGGGCCACAGAATATG+TGG - chr2_2:23411378-23411397 Msa0244690:CDS 45.0%
CCACCCTAACAGAGCAATCA+TGG + chr2_2:23410064-23410083 None:intergenic 50.0%
CCATGATTGCTCTGTTAGGG+TGG - chr2_2:23410061-23410080 Msa0244690:CDS 50.0%
AAGGGATGCCACTGTTGAGT+TGG - chr2_2:23410907-23410926 Msa0244690:intron 50.0%
AGGGATGCCACTGTTGAGTT+GGG - chr2_2:23410908-23410927 Msa0244690:intron 50.0%
ATTGGTCAGTCCCTTATGGG+AGG - chr2_2:23410939-23410958 Msa0244690:intron 50.0%
GTCCCTTATGGGAGGAAAGA+TGG - chr2_2:23410947-23410966 Msa0244690:intron 50.0%
GTAATGTTCGCATGGCCCAT+TGG + chr2_2:23411007-23411026 None:intergenic 50.0%
GTCAAGGACAGTCAAGCCTT+TGG + chr2_2:23411053-23411072 None:intergenic 50.0%
! CAGGGGCACATACTATTGGA+AGG - chr2_2:23411251-23411270 Msa0244690:intron 50.0%
GTGGCCAATGCTGAAACAAG+TGG + chr2_2:23411517-23411536 None:intergenic 50.0%
CCACCCTAACAGAGCAATCA+TGG + chr2_2:23410064-23410083 None:intergenic 50.0%
CCATGATTGCTCTGTTAGGG+TGG - chr2_2:23410061-23410080 Msa0244690:CDS 50.0%
AAGGGATGCCACTGTTGAGT+TGG - chr2_2:23410907-23410926 Msa0244690:intron 50.0%
AGGGATGCCACTGTTGAGTT+GGG - chr2_2:23410908-23410927 Msa0244690:intron 50.0%
ATTGGTCAGTCCCTTATGGG+AGG - chr2_2:23410939-23410958 Msa0244690:intron 50.0%
GTCCCTTATGGGAGGAAAGA+TGG - chr2_2:23410947-23410966 Msa0244690:intron 50.0%
GTAATGTTCGCATGGCCCAT+TGG + chr2_2:23411007-23411026 None:intergenic 50.0%
GTCAAGGACAGTCAAGCCTT+TGG + chr2_2:23411053-23411072 None:intergenic 50.0%
! CAGGGGCACATACTATTGGA+AGG - chr2_2:23411251-23411270 Msa0244690:intron 50.0%
GTGGCCAATGCTGAAACAAG+TGG + chr2_2:23411517-23411536 None:intergenic 50.0%
!! GATGCCACTGTTGAGTTGGG+TGG - chr2_2:23410911-23410930 Msa0244690:intron 55.0%
TGGTCCACCCAACTCAACAG+TGG + chr2_2:23410918-23410937 None:intergenic 55.0%
! GGTCTGGTTTGCCTGTTCCT+TGG + chr2_2:23411315-23411334 None:intergenic 55.0%
!! GATGCCACTGTTGAGTTGGG+TGG - chr2_2:23410911-23410930 Msa0244690:intron 55.0%
TGGTCCACCCAACTCAACAG+TGG + chr2_2:23410918-23410937 None:intergenic 55.0%
! GGTCTGGTTTGCCTGTTCCT+TGG + chr2_2:23411315-23411334 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 23409795 23411660 23409795 ID=Msa0244690;Name=Msa0244690
chr2_2 mRNA 23409795 23411660 23409795 ID=Msa0244690-mRNA-1;Parent=Msa0244690;Name=Msa0244690-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|344
chr2_2 exon 23411376 23411660 23411376 ID=Msa0244690-mRNA-1:exon:8939;Parent=Msa0244690-mRNA-1
chr2_2 exon 23410367 23410709 23410367 ID=Msa0244690-mRNA-1:exon:8938;Parent=Msa0244690-mRNA-1
chr2_2 exon 23409795 23410201 23409795 ID=Msa0244690-mRNA-1:exon:8937;Parent=Msa0244690-mRNA-1
chr2_2 CDS 23411376 23411660 23411376 ID=Msa0244690-mRNA-1:cds;Parent=Msa0244690-mRNA-1
chr2_2 CDS 23410367 23410709 23410367 ID=Msa0244690-mRNA-1:cds;Parent=Msa0244690-mRNA-1
chr2_2 CDS 23409795 23410201 23409795 ID=Msa0244690-mRNA-1:cds;Parent=Msa0244690-mRNA-1
Gene Sequence

>Msa0244690

ATGTCAAATTCTTACATCCGATTGTTGCTTCTTTTGGTTCTTTACATAATTTCAGTTAATTCAACCCAACCTTATGATGAAAACTATGAGGATGCTGAGTTCACTCTACAAGTCCCAACATTAGAGGATACAGATTTGGATAATCTCTTATCCTTTGGTTACTACCGTAAAAGCTGCCCTCAATTTGAATCCATCTTGCATAGCAAAGTCAAAGAATGGATTAAGAAGGATTACACTTTAGCAGCTAGTCTCCTAAGGTTGCACTTCCATGATTGCTCTGTTAGGGGATGTGATGGCTCTATTTTATTGAATCATGAAGGAAGTGAAAGGAAATCACAAGTAAGCAAGACATTGAGAGGTTATGAAGTTATTGATGATATTAAGGCAGAGATAGAGAAACAATGTCCTAAAACAGTCTCTTGTGCTGATATTCTTACAACTGCTTCAAGGGATGCCACTGTTGAGTTGGGTGGACCATATTGGTCAGTCCCTTATGGGAGGAAAGATGGAAAAGTCTCTATTGACAAAGAAGCTGAAATGGTACCAATGGGCCATGCGAACATTACTTCCTTGATTGAATATTTTCAATCCAAAGGCTTGACTGTCCTTGACTTAGTTGTTCTCTCAGGGGCACATACTATTGGAAGGACTACTTGTGGCTCTATTCAATACAGGTTATACAACTACCAAGGAACAGGCAAACCAGACCCATCATTAGATCCAAAATACCTTAACTTCTTGCAAAGAAAATGTAGATGGGCCACAGAATATGTGGATCTTGATGCAACAACACCAAAAAAATTTGACAGAATGTACTACATAAATCTCAAAAAGAAAATGGGATTGTTAACAACAGATCAATTGTTATATTCTGATCCAAGAACTTCTCCACTTGTTTCAGCATTGGCCACAACACCATCTGTTTTTGAACATCAATTTGCTGTTTCAATGTCAAAGTTTGGTGTCATTGATGTTCTTACTGGAGATGATGAAGGAGAAATCAGGACCAATTGCAATTTTGTCAATGCTTATTGA
Protein sequence

>Msa0244690

MSNSYIRLLLLLVLYIISVNSTQPYDENYEDAEFTLQVPTLEDTDLDNLLSFGYYRKSCPQFESILHSKVKEWIKKDYTLAASLLRLHFHDCSVRGCDGSILLNHEGSERKSQVSKTLRGYEVIDDIKAEIEKQCPKTVSCADILTTASRDATVELGGPYWSVPYGRKDGKVSIDKEAEMVPMGHANITSLIEYFQSKGLTVLDLVVLSGAHTIGRTTCGSIQYRLYNYQGTGKPDPSLDPKYLNFLQRKCRWATEYVDLDATTPKKFDRMYYINLKKKMGLLTTDQLLYSDPRTSPLVSALATTPSVFEHQFAVSMSKFGVIDVLTGDDEGEIRTNCNFVNAY*