AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0199950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199950 MtrunA17_Chr2g0294711 96.393 915 33 0 1 915 1 915 0.0 1854
Msa0199950 MtrunA17_Chr4g0068161 70.684 921 257 3 1 909 1 920 0.0 1331
Msa0199950 MtrunA17_Chr8g0377501 36.395 588 316 17 356 910 406 968 5.23e-89 304
Msa0199950 MtrunA17_Chr8g0377501 48.344 151 76 1 24 172 13 163 9.99e-40 159
Msa0199950 MtrunA17_Chr8g0382191 32.097 620 376 14 298 886 432 1037 1.33e-85 296
Msa0199950 MtrunA17_Chr8g0382191 47.953 171 80 2 25 186 9 179 2.21e-42 167
Msa0199950 MtrunA17_Chr2g0279141 31.981 616 372 13 301 886 395 993 2.46e-82 287
Msa0199950 MtrunA17_Chr2g0279141 54.861 144 63 2 25 168 13 154 2.28e-39 158
Msa0199950 MtrunA17_Chr4g0050401 32.500 560 335 12 356 886 436 981 2.64e-79 278
Msa0199950 MtrunA17_Chr4g0050401 55.039 129 58 0 25 153 13 141 1.92e-38 155
Msa0199950 MtrunA17_Chr3g0122351 32.828 594 341 16 340 908 375 935 5.05e-72 256
Msa0199950 MtrunA17_Chr3g0122351 54.135 133 59 1 26 156 8 140 1.44e-39 158
Msa0199950 MtrunA17_Chr8g0382181 37.815 119 73 1 67 184 8 126 4.32e-21 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199950 AT3G16940.1 56.678 891 324 13 9 896 7 838 0.0 971
Msa0199950 AT3G16940.3 56.272 869 318 13 31 896 2 811 0.0 936
Msa0199950 AT3G16940.2 55.089 786 296 12 9 791 7 738 0.0 823
Msa0199950 AT5G09410.1 31.187 994 538 27 25 910 16 971 7.24e-132 421
Msa0199950 AT5G09410.3 30.030 1009 548 26 25 910 75 1048 2.47e-122 397
Msa0199950 AT2G22300.3 35.413 545 312 12 356 886 402 920 1.60e-86 298
Msa0199950 AT2G22300.3 66.265 83 28 0 71 153 1 83 8.07e-29 124
Msa0199950 AT2G22300.2 35.413 545 312 12 356 886 460 978 7.41e-86 297
Msa0199950 AT2G22300.2 58.571 140 58 0 14 153 2 141 1.17e-45 178
Msa0199950 AT2G22300.1 35.413 545 312 12 356 886 460 978 7.41e-86 297
Msa0199950 AT2G22300.1 58.571 140 58 0 14 153 2 141 1.17e-45 178
Msa0199950 AT5G64220.1 31.230 618 350 13 302 886 423 998 1.31e-82 288
Msa0199950 AT5G64220.1 50.276 181 78 2 25 193 13 193 1.00e-44 175
Msa0199950 AT5G64220.2 31.230 618 350 13 302 886 423 998 1.31e-82 288
Msa0199950 AT5G64220.2 50.276 181 78 2 25 193 13 193 1.00e-44 175
Msa0199950 AT5G09410.4 31.535 593 357 13 356 910 287 868 1.86e-80 279
Msa0199950 AT5G09410.2 31.535 593 357 13 356 910 408 989 1.50e-79 279
Msa0199950 AT5G09410.2 49.711 173 70 3 25 183 16 185 8.08e-42 166
Msa0199950 AT1G67310.1 35.069 576 330 14 357 908 444 999 2.74e-70 253
Msa0199950 AT1G67310.1 46.324 136 73 0 21 156 32 167 3.76e-35 145

Find 204 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATAAATTTACATGAATT+TGG 0.133181 2_1:+19375627 None:intergenic
CTGGATTTCCGCGACAAATT+TGG 0.162843 2_1:-19371043 Msa0199950:CDS
AGATGTTTGGTGGATGTTTC+TGG 0.192027 2_1:-19368913 Msa0199950:three_prime_UTR
GGACTCGCATTTGAATTTAA+TGG 0.227685 2_1:+19372976 None:intergenic
CATGAAGTGTATAAAACTTT+TGG 0.232830 2_1:+19371282 None:intergenic
CTATCAGAAGACTTGGATTC+TGG 0.246247 2_1:-19372925 Msa0199950:CDS
AAATTAACAACTTGGCTAAT+AGG 0.247521 2_1:+19371502 None:intergenic
CAAACTCAGGGAATGGCTTT+TGG 0.255377 2_1:-19371188 Msa0199950:CDS
AGTTGGATCTGTCACCAAAT+TGG 0.280566 2_1:+19370342 None:intergenic
GCCACAGACACACATTATAT+TGG 0.281294 2_1:+19371633 None:intergenic
TCTAATAATCACATCAAATA+AGG 0.281850 2_1:+19368857 None:intergenic
GTAAGGTTCTCAGCATTTAC+TGG 0.282291 2_1:+19370160 None:intergenic
CAACTTGGCTAATAGGCTTA+TGG 0.302970 2_1:+19371509 None:intergenic
GGCAATATCGTAAAATTCTA+TGG 0.307153 2_1:-19369721 Msa0199950:CDS
AATTTGTCTTAGGGAGAATA+TGG 0.308955 2_1:-19370395 Msa0199950:intron
TTCTTGCAGGTCCTAGTAAC+TGG 0.310886 2_1:-19371691 Msa0199950:intron
GCAGCAGGATCGTGCAAAAT+AGG 0.312540 2_1:+19371466 None:intergenic
ATATTTGTAATTGCTGAGTA+TGG 0.314431 2_1:+19374546 None:intergenic
ATGAGCTTAATACACTTGAT+TGG 0.321779 2_1:-19372530 Msa0199950:CDS
ATTCTAACTCCGCCAGAGTC+TGG 0.324528 2_1:-19372146 Msa0199950:CDS
CTTCATTGGGCAGCATATAA+TGG 0.325901 2_1:-19371010 Msa0199950:CDS
TCCATCACCAGTGATGAAAA+TGG 0.327471 2_1:+19371906 None:intergenic
AATGCTTTAGTATCTTGAAA+TGG 0.329316 2_1:-19368964 Msa0199950:three_prime_UTR
TTTGGAAAGAAATAATGTTT+TGG 0.330089 2_1:+19371300 None:intergenic
AGGTTGGAGTTTACCGATGC+TGG 0.332809 2_1:-19371582 Msa0199950:CDS
GGTGCAGTTGTATCAGAAAT+AGG 0.337957 2_1:+19372955 None:intergenic
TCGATGCAGGCTGCATTTAG+AGG 0.340503 2_1:-19369758 Msa0199950:intron
AATACCCCTACTATACAAAA+TGG 0.347537 2_1:-19372483 Msa0199950:CDS
ATCTGGCGTGCTTCCTCCTC+TGG 0.351586 2_1:+19370007 None:intergenic
CACGCATACAAGCAGCGTTT+AGG 0.356504 2_1:-19370075 Msa0199950:CDS
TCATGCTTAATTAAGATGTT+TGG 0.358384 2_1:-19368926 Msa0199950:three_prime_UTR
TTGGATGGACAGCTCTTCAT+TGG 0.360303 2_1:-19371024 Msa0199950:CDS
TTACATAAGTCTAAAGGAAT+TGG 0.362651 2_1:+19369085 None:intergenic
TCCGAAAAGATGGGCACAAC+TGG 0.365542 2_1:-19374017 Msa0199950:CDS
GTTGGATCTGTCACCAAATT+GGG 0.373235 2_1:+19370343 None:intergenic
TTGCAAAGTCAGATTACCTT+TGG 0.380536 2_1:-19372017 Msa0199950:CDS
TTTGATCGTTAACACTTTCT+GGG 0.382927 2_1:+19372099 None:intergenic
TGTTCCTGTAGAAATTGTTC+AGG 0.386765 2_1:-19371602 Msa0199950:CDS
ACGCATACAAGCAGCGTTTA+GGG 0.390302 2_1:-19370074 Msa0199950:CDS
TTTGAATTTAATGGTGTAAC+GGG 0.392292 2_1:+19372985 None:intergenic
GCTTTGTTCGAAGATGTTAT+TGG 0.400349 2_1:-19373683 Msa0199950:CDS
GTAATATGAAATACTTGTTC+CGG 0.401537 2_1:+19371864 None:intergenic
TCCAGTACAGATTCCGTTCA+TGG 0.405822 2_1:-19369910 Msa0199950:CDS
TTAGCTCAATTTGCACACTA+TGG 0.408461 2_1:+19368999 None:intergenic
AGAGGACCAAGTGTACTTAA+AGG 0.409759 2_1:-19370137 Msa0199950:CDS
TAATCAACAATCTTCTCTTC+CGG 0.411008 2_1:-19371883 Msa0199950:CDS
CTGGATCAGATGTAGTGGTT+TGG 0.411433 2_1:+19370179 None:intergenic
TATGAAGTTTGTTGTGTTTG+TGG 0.411847 2_1:-19375455 Msa0199950:five_prime_UTR
TTCAATGACATGAGCTTAGC+TGG 0.412581 2_1:-19370220 Msa0199950:CDS
ATGCTTTAGTATCTTGAAAT+GGG 0.413512 2_1:-19368963 Msa0199950:three_prime_UTR
GAACAAAGCCTGGGTTATCT+TGG 0.413976 2_1:+19373697 None:intergenic
AAGAATCATTCTATGAATCT+TGG 0.418069 2_1:-19372077 Msa0199950:CDS
CGTAAAATTCTATGGTCTGT+TGG 0.422461 2_1:-19369713 Msa0199950:CDS
TGAGCTTAATACACTTGATT+GGG 0.422562 2_1:-19372529 Msa0199950:CDS
AGTACACTTGGTCCTCTGTA+AGG 0.423640 2_1:+19370143 None:intergenic
TTGTGGAGCAAAGCCCAATT+TGG 0.424453 2_1:-19370356 Msa0199950:CDS
CTGCTGCCTCGGCTGTTGTC+CGG 0.435310 2_1:+19370098 None:intergenic
TAACATCTTCGAACAAAGCC+TGG 0.436408 2_1:+19373687 None:intergenic
CTTAGGAACTTCCGAAAAGA+TGG 0.440286 2_1:-19374027 Msa0199950:CDS
AGGATACATTGGCAGCTTAC+CGG 0.443232 2_1:-19370117 Msa0199950:CDS
AAGCACAACAAGAGTATAGC+AGG 0.445270 2_1:-19369490 Msa0199950:CDS
AGTACAGCCACCAGGGTATT+CGG 0.445573 2_1:+19370318 None:intergenic
TTGAATTTCGTCTTCAAATG+AGG 0.446176 2_1:-19371417 Msa0199950:CDS
CCGTGGGCTTGAGGTGAATC+CGG 0.447115 2_1:-19369642 Msa0199950:CDS
CACACAAATGAATTACACTT+TGG 0.449905 2_1:+19371119 None:intergenic
GTTACATTACATAAGTCTAA+AGG 0.452727 2_1:+19369079 None:intergenic
TCATCTTTCATGTCTTCGTC+CGG 0.452729 2_1:+19369623 None:intergenic
TTCTAACTCCGCCAGAGTCT+GGG 0.453587 2_1:-19372145 Msa0199950:CDS
TACTGAGGTGGCCCCTTCGT+GGG 0.453889 2_1:-19371844 Msa0199950:CDS
AATTCATTTGTGTGCAATGT+TGG 0.456072 2_1:-19371110 Msa0199950:CDS
TTCGTGGTCAGGCTTGTCGC+TGG 0.456278 2_1:-19371062 Msa0199950:CDS
TTAGTCTCTTTCAGTGCAGT+AGG 0.457802 2_1:+19371334 None:intergenic
CTTGTTGGTTCAGAGATACA+TGG 0.458740 2_1:-19375367 Msa0199950:CDS
TTACTGAGGTGGCCCCTTCG+TGG 0.464196 2_1:-19371845 Msa0199950:CDS
AACTTCACAGGACAGCTTGT+TGG 0.464852 2_1:-19375382 Msa0199950:CDS
CCAGGGTTTCGCCGACATCC+AGG 0.464964 2_1:+19374611 None:intergenic
GTTTCTCCACATGCGACGTC+AGG 0.466290 2_1:-19369873 Msa0199950:CDS
TCCTCAGAAATTCCTACGTA+TGG 0.468731 2_1:-19372170 Msa0199950:CDS
GTTGACACTTTAGTCAATGA+AGG 0.469768 2_1:-19372041 Msa0199950:CDS
TGGGTAATGCCGCATTCTCC+TGG 0.471161 2_1:-19371562 Msa0199950:CDS
TTATCTTTCAGAAAAGTGTC+TGG 0.473332 2_1:-19370251 Msa0199950:CDS
GTGCAATGTTGGGATATACT+TGG 0.476598 2_1:-19371099 Msa0199950:CDS
TTGTATGCGTGCTGCTGCCT+CGG 0.476655 2_1:+19370087 None:intergenic
TATTTGACCGCAAGATGCTT+AGG 0.477000 2_1:-19374044 Msa0199950:CDS
TCCATGAACGGAATCTGTAC+TGG 0.477269 2_1:+19369909 None:intergenic
CAGTGGAAGAGACATACAAC+TGG 0.483109 2_1:-19371441 Msa0199950:CDS
CCACCAGGGTATTCGGTAGT+TGG 0.483552 2_1:+19370325 None:intergenic
AAATAGAGATTCACAAATCC+AGG 0.484484 2_1:+19371544 None:intergenic
TGCTTAATTAAGATGTTTGG+TGG 0.491743 2_1:-19368923 Msa0199950:three_prime_UTR
CCTGTAGAAATTGTTCAGGT+TGG 0.492274 2_1:-19371598 Msa0199950:CDS
AATATGTAACTGAAATGATA+AGG 0.494690 2_1:-19368880 Msa0199950:three_prime_UTR
GAGAAAACATCAAGGGTCTT+CGG 0.497702 2_1:+19371370 None:intergenic
GAAGAGGACTTCTTTAAGAC+TGG 0.502934 2_1:-19369581 Msa0199950:CDS
TTACATGAATTTGGAGAAGA+GGG 0.504725 2_1:+19375636 None:intergenic
CCTGGATGTCGGCGAAACCC+TGG 0.509259 2_1:-19374611 Msa0199950:CDS
AAGCAATGGCAGCCGCTGCT+CGG 0.509734 2_1:-19369934 Msa0199950:CDS
TGGATGGACAGCTCTTCATT+GGG 0.509818 2_1:-19371023 Msa0199950:CDS
ATTCATTTGTGTGCAATGTT+GGG 0.510037 2_1:-19371109 Msa0199950:CDS
AGAGAAAATATCCAGTTACT+AGG 0.515300 2_1:+19371680 None:intergenic
AAAAGGTTTCCGTGGGCTTG+AGG 0.516403 2_1:-19369651 Msa0199950:CDS
ACATTACTGCTCCCAGACTC+TGG 0.516774 2_1:+19372134 None:intergenic
ACCATTCGTATAAGCACTGC+TGG 0.516953 2_1:+19372900 None:intergenic
GTCTCTTCCACTGAAGCAGC+AGG 0.517570 2_1:+19371451 None:intergenic
ACATTATATTGGACTTTGCA+AGG 0.517791 2_1:+19371644 None:intergenic
ATGGATTCTATCAGAAGACT+TGG 0.519452 2_1:-19372932 Msa0199950:CDS
CTTGTTGTGCTTTCTTAGAA+CGG 0.523973 2_1:+19369501 None:intergenic
AATGGATCAGTAACAGATGA+AGG 0.524251 2_1:+19371924 None:intergenic
AGACATGAAAGATGAGAAGC+AGG 0.524871 2_1:-19369615 Msa0199950:CDS
ATTTGAATTTAATGGTGTAA+CGG 0.525522 2_1:+19372984 None:intergenic
GGTTGGAGTTTACCGATGCT+GGG 0.525743 2_1:-19371581 Msa0199950:CDS
GTTGCTACGTTGTTGTCTTG+TGG 0.526879 2_1:-19370373 Msa0199950:CDS
CCAACCTGAACAATTTCTAC+AGG 0.529057 2_1:+19371598 None:intergenic
TCAGCAGCAGTACAGCCACC+AGG 0.531177 2_1:+19370310 None:intergenic
GCACGATCCTGCTGCTTCAG+TGG 0.534298 2_1:-19371458 Msa0199950:CDS
GATATTCGAAATTAACAACT+TGG 0.536878 2_1:+19371494 None:intergenic
AGGACTTCTTTAAGACTGGT+AGG 0.538366 2_1:-19369577 Msa0199950:CDS
TTTACATGAATTTGGAGAAG+AGG 0.539840 2_1:+19375635 None:intergenic
CATGGATTCCACACCTTGAG+AGG 0.540142 2_1:-19375349 Msa0199950:intron
ACATCATAAGTTCCTATGAA+AGG 0.542367 2_1:-19369128 Msa0199950:exon
ACATTGTCAAAGCTGCCATT+CGG 0.542413 2_1:+19372337 None:intergenic
GCTGATCTTGCTTATATGAA+AGG 0.543937 2_1:-19370292 Msa0199950:CDS
TTTCAACGCAATTTCGAACA+AGG 0.546511 2_1:+19371213 None:intergenic
TGCTTTCTTAGAACGGAACA+TGG 0.547354 2_1:+19369508 None:intergenic
ATGCATTGTACTACCTCTCA+AGG 0.548905 2_1:+19375336 None:intergenic
AATCATTCTATGAATCTTGG+TGG 0.549602 2_1:-19372074 Msa0199950:CDS
AGTATGGCGTGAATCTCATT+CGG 0.549858 2_1:+19374562 None:intergenic
AAGTCTTCTGATAGAATCCA+TGG 0.551451 2_1:+19372934 None:intergenic
TTGAGAAAGTAATCCTGCGT+TGG 0.551923 2_1:-19369685 Msa0199950:CDS
TCTTGTCTCAAAGTTGCGAA+AGG 0.552815 2_1:+19369958 None:intergenic
GCAGGAAAGCGATGTAGAAG+AGG 0.559635 2_1:-19369597 Msa0199950:CDS
ATGGCACAAAACAACTTCAC+AGG 0.561027 2_1:-19375394 Msa0199950:CDS
GAGTCTGGAGCACATAGTCC+TGG 0.563482 2_1:-19373462 Msa0199950:CDS
AGAGTATAGCAGGATGAAGA+TGG 0.564933 2_1:-19369480 Msa0199950:CDS
AACATCTTCGAACAAAGCCT+GGG 0.568972 2_1:+19373688 None:intergenic
GTGTTTCACGATAATGAACC+AGG 0.574522 2_1:+19373444 None:intergenic
ACTAAAATTGCGATATCAGT+CGG 0.575281 2_1:-19370044 Msa0199950:CDS
CAGTGGAAGAAACCCACGAA+GGG 0.577636 2_1:+19371832 None:intergenic
TTCATTGACTAAAGTGTCAA+CGG 0.579033 2_1:+19372043 None:intergenic
GCAAATTCAATGGCTTGACA+TGG 0.579151 2_1:+19374515 None:intergenic
ACCAGCAGTGCTTATACGAA+TGG 0.580709 2_1:-19372901 Msa0199950:intron
TTAAAGAGAAAAGGTTTCCG+TGG 0.583364 2_1:-19369659 Msa0199950:CDS
TAAAGAGAAAAGGTTTCCGT+GGG 0.583584 2_1:-19369658 Msa0199950:CDS
ATGTATCCTTTAAGTACACT+TGG 0.583656 2_1:+19370131 None:intergenic
AGTGTACTTAAAGGATACAT+TGG 0.584610 2_1:-19370128 Msa0199950:CDS
GCTTATATGAAAGGATATGA+CGG 0.585929 2_1:-19370283 Msa0199950:CDS
AGTATTTCATATTACTGAGG+TGG 0.586077 2_1:-19371856 Msa0199950:CDS
ATTTACTGGATCAGATGTAG+TGG 0.586177 2_1:+19370174 None:intergenic
ATTGTTCATCCACGTTCCAA+AGG 0.586185 2_1:+19372001 None:intergenic
ATTTCCGCGACAAATTTGGA+TGG 0.586245 2_1:-19371039 Msa0199950:CDS
CTTGTCATAGGCTGTGATGA+TGG 0.586310 2_1:-19375413 Msa0199950:exon
CTTCACTAGAGAAAACATCA+AGG 0.586742 2_1:+19371362 None:intergenic
ACTTGATTGGGATGAACTAG+TGG 0.587256 2_1:-19372517 Msa0199950:CDS
TAATAGCCTGACGTCGCATG+TGG 0.587369 2_1:+19369867 None:intergenic
GTCAGATTACCTTTGGAACG+TGG 0.587583 2_1:-19372010 Msa0199950:CDS
TCAATTTATCAGTCCAGAGG+AGG 0.588337 2_1:-19370020 Msa0199950:CDS
AGAACATGGTGTGTAAGATA+CGG 0.588615 2_1:+19371977 None:intergenic
AGAAGAGGGTCTGTTCTGAA+TGG 0.588902 2_1:+19375650 None:intergenic
CTCTACGCAACTTCCATGAA+CGG 0.595420 2_1:+19369897 None:intergenic
CAGCAGCAGTACAGCCACCA+GGG 0.604424 2_1:+19370311 None:intergenic
GGAAGTTCCTAAGCATCTTG+CGG 0.606340 2_1:+19374037 None:intergenic
TTAGAGGCTTTCAAGTGCGT+AGG 0.607046 2_1:-19369742 Msa0199950:CDS
TTCTCTTTAAAAGCCAACGC+AGG 0.610360 2_1:+19369672 None:intergenic
TTGTACTACCTCTCAAGGTG+TGG 0.614235 2_1:+19375341 None:intergenic
TGCAATGTTGGGATATACTT+GGG 0.615912 2_1:-19371098 Msa0199950:CDS
TTAGGAACTTCCGAAAAGAT+GGG 0.618001 2_1:-19374026 Msa0199950:CDS
AGCTTACCGGACAACAGCCG+AGG 0.619242 2_1:-19370104 Msa0199950:CDS
CTAAATCAAAGCTTACCGAA+TGG 0.621517 2_1:-19372352 Msa0199950:CDS
TTCACAAATCCAGGAGAATG+CGG 0.627682 2_1:+19371553 None:intergenic
TTCTTCCACTGAGAAAACAA+AGG 0.631295 2_1:-19371820 Msa0199950:intron
AGCTTAGCTGGAAATATCAG+TGG 0.631881 2_1:-19370208 Msa0199950:CDS
AGAACTCATCAATTCTGATG+TGG 0.633421 2_1:-19369168 Msa0199950:CDS
CTTTGAGACAAGAAAAGCAA+TGG 0.633518 2_1:-19369948 Msa0199950:CDS
GATGGCACATAGTCAAGCAA+AGG 0.635449 2_1:-19369462 Msa0199950:intron
TTCACTAGAGAAAACATCAA+GGG 0.636868 2_1:+19371363 None:intergenic
AATGCGGCATTACCCAGCAT+CGG 0.640461 2_1:+19371569 None:intergenic
CCGGATTCACCTCAAGCCCA+CGG 0.642313 2_1:+19369642 None:intergenic
TTTCTGATACAACTGCACCA+TGG 0.644660 2_1:-19372951 Msa0199950:CDS
ACCATACGTAGGAATTTCTG+AGG 0.650448 2_1:+19372169 None:intergenic
TATGACACAGACCTGGATGT+CGG 0.650638 2_1:-19374622 Msa0199950:intron
TTACACACCATGTTCTGTAG+AGG 0.653988 2_1:-19371970 Msa0199950:CDS
ACCCCTACTATACAAAATGG+AGG 0.655140 2_1:-19372480 Msa0199950:intron
TAAGACTGGTAGGAAACAAG+CGG 0.659485 2_1:-19369567 Msa0199950:CDS
GGTTCAATTTATCAGTCCAG+AGG 0.660144 2_1:-19370023 Msa0199950:CDS
CTGTCCATCCAAATTTGTCG+CGG 0.660885 2_1:+19371035 None:intergenic
ACAAGTATTTCATATTACTG+AGG 0.664709 2_1:-19371859 Msa0199950:CDS
GGCCGTGTGCATAATATACG+TGG 0.667740 2_1:+19373718 None:intergenic
TCATTATCGTGAAACACAAG+AGG 0.669255 2_1:-19373438 Msa0199950:intron
TCCAATATAATGTGTGTCTG+TGG 0.683099 2_1:-19371634 Msa0199950:CDS
AGTGGAAGAAACCCACGAAG+GGG 0.688757 2_1:+19371833 None:intergenic
GTTGACGCCTCTACAGAACA+TGG 0.690824 2_1:+19371963 None:intergenic
GATCCAACTACCGAATACCC+TGG 0.692497 2_1:-19370328 Msa0199950:CDS
TTACTGCTCCCAGACTCTGG+CGG 0.695060 2_1:+19372137 None:intergenic
GGATGTCGGCGAAACCCTGG+AGG 0.700592 2_1:-19374608 Msa0199950:CDS
ATCCACGTATATTATGCACA+CGG 0.702464 2_1:-19373720 Msa0199950:CDS
TCTGTACTGGATCCGAGCAG+CGG 0.708022 2_1:+19369922 None:intergenic
GCACACGGCCAAGATAACCC+AGG 0.722098 2_1:-19373705 Msa0199950:CDS
AGAACGCGTTGAGAGATCTG+TGG 0.723214 2_1:-19369543 Msa0199950:CDS
ACTACTGAGTATGATGCACA+AGG 0.723260 2_1:-19371142 Msa0199950:CDS
GGAGTTAGAATACCATACGT+AGG 0.723293 2_1:+19372158 None:intergenic
AGTGGAAGAGACATACAACT+GGG 0.727869 2_1:-19371440 Msa0199950:CDS
TCAGTGGAAGAAACCCACGA+AGG 0.732652 2_1:+19371831 None:intergenic
TGATTTAGTTGATAGTAACG+CGG 0.738031 2_1:+19372367 None:intergenic
AAATGCTGAGAACCTTACAG+AGG 0.749608 2_1:-19370155 Msa0199950:CDS
CCAACTACCGAATACCCTGG+TGG 0.762091 2_1:-19370325 Msa0199950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATGAAAAATCAAAA+GGG + chr2_1:19368925-19368944 None:intergenic 10.0%
!! AATAAAAATGAAAAATCAAA+AGG + chr2_1:19368926-19368945 None:intergenic 10.0%
!! ATCATATTATATAGTATATA+TGG + chr2_1:19370072-19370091 None:intergenic 10.0%
!! TATTTACTATTTATAAAGAA+AGG + chr2_1:19370185-19370204 None:intergenic 10.0%
!! ATTTATTTATTGAAGAAAAT+TGG - chr2_1:19371449-19371468 Msa0199950:CDS 10.0%
!! TTTATTTATTGAAGAAAATT+GGG - chr2_1:19371450-19371469 Msa0199950:CDS 10.0%
!!! TATACTTTAAATTTAACTTT+TGG - chr2_1:19372104-19372123 Msa0199950:CDS 10.0%
!! ATGATAAATTTACATGAATT+TGG + chr2_1:19368881-19368900 None:intergenic 15.0%
!! TAAAAATGAAAAATCAAAAG+GGG + chr2_1:19368924-19368943 None:intergenic 15.0%
!!! TTTTTTATTTTTTTTTGTGG+AGG - chr2_1:19369288-19369307 Msa0199950:intron 15.0%
!!! TTTTTATTTTTTTTTGTGGA+GGG - chr2_1:19369289-19369308 Msa0199950:intron 15.0%
!!! TATTTTGATGTTTAATTGTT+TGG - chr2_1:19369315-19369334 Msa0199950:intron 15.0%
!! AAGATTTCTAATTAAACAAT+AGG + chr2_1:19369545-19369564 None:intergenic 15.0%
!! TTGTTTAATTAGAAATCTTT+CGG - chr2_1:19369546-19369565 Msa0199950:CDS 15.0%
!! ATTTCAAATATATCGTAAAA+AGG + chr2_1:19369676-19369695 None:intergenic 15.0%
!! AATCAAATATAACATAGTTA+TGG + chr2_1:19370662-19370681 None:intergenic 15.0%
!!! ATTTAAAGTATAAAATCGTA+AGG + chr2_1:19372096-19372115 None:intergenic 15.0%
!!! TAACTGTAATTATTTTGTTA+TGG - chr2_1:19372734-19372753 Msa0199950:intron 15.0%
!! AAATTAATCACATATTAGAA+CGG + chr2_1:19375142-19375161 None:intergenic 15.0%
!!! TTTTTTTCTTTTCTTTGTAT+AGG - chr2_1:19375458-19375477 Msa0199950:five_prime_UTR 15.0%
!! AATAAAATTAAACCAAACCA+AGG + chr2_1:19369267-19369286 None:intergenic 20.0%
!!! TATAATTTTCAATGCAACTT+AGG - chr2_1:19369383-19369402 Msa0199950:intron 20.0%
!!! AGTGAAAAAATAAGTTTTGT+CGG - chr2_1:19369406-19369425 Msa0199950:intron 20.0%
!!! TTACGATATATTTGAAATAC+TGG - chr2_1:19369678-19369697 Msa0199950:CDS 20.0%
!!! TTTTGTTTATTTGATGTTGA+GGG - chr2_1:19370587-19370606 Msa0199950:intron 20.0%
!! AACATGCATACATAATATAT+AGG + chr2_1:19370901-19370920 None:intergenic 20.0%
!!! GTTTTTATTGTTTTTCTTTC+AGG - chr2_1:19371021-19371040 Msa0199950:CDS 20.0%
!! CAATAAATAAATAGATCACA+TGG + chr2_1:19371441-19371460 None:intergenic 20.0%
!! ATTTGAATTTAATGGTGTAA+CGG + chr2_1:19371524-19371543 None:intergenic 20.0%
!! CACTACATAATAATCAATTA+GGG + chr2_1:19371783-19371802 None:intergenic 20.0%
!! ACACTACATAATAATCAATT+AGG + chr2_1:19371784-19371803 None:intergenic 20.0%
!! AACAATATATCATAACCAAT+AGG + chr2_1:19371834-19371853 None:intergenic 20.0%
!! GATATATGAGAAAAAGAAAA+AGG + chr2_1:19372714-19372733 None:intergenic 20.0%
!!! TTTGGAAAGAAATAATGTTT+TGG + chr2_1:19373208-19373227 None:intergenic 20.0%
!! GACAAATTTCATATAGTTTA+AGG + chr2_1:19373675-19373694 None:intergenic 20.0%
!! TAGTTATGTATGTATCTTTA+GGG + chr2_1:19373960-19373979 None:intergenic 20.0%
!! ATAGTTATGTATGTATCTTT+AGG + chr2_1:19373961-19373980 None:intergenic 20.0%
!!! TTTGTTTGAAATTTGTCTTA+GGG - chr2_1:19374101-19374120 Msa0199950:intron 20.0%
!! AACAAAAAATAACGACAATT+TGG - chr2_1:19375106-19375125 Msa0199950:intron 20.0%
!! GTTAATACAATTCAAATACA+TGG + chr2_1:19375237-19375256 None:intergenic 20.0%
!! ATTTGACATGATTATTAACT+TGG - chr2_1:19375279-19375298 Msa0199950:intron 20.0%
!!! TATGAAAGGTTTATGTTTTT+GGG - chr2_1:19375391-19375410 Msa0199950:CDS 20.0%
!! AATATGTAACTGAAATGATA+AGG - chr2_1:19375625-19375644 Msa0199950:intron 20.0%
!! TCTAATAATCACATCAAATA+AGG + chr2_1:19375651-19375670 None:intergenic 20.0%
!! TATTCTTATTTATGCTACCT+TGG - chr2_1:19369247-19369266 Msa0199950:intron 25.0%
! TGATGTTTAATTGTTTGGTA+TGG - chr2_1:19369320-19369339 Msa0199950:intron 25.0%
! TAAAAGTTGTCAAAGATTTG+AGG + chr2_1:19369456-19369475 None:intergenic 25.0%
!!! ATGCTTTTTTTGTTTGTAAC+CGG + chr2_1:19369603-19369622 None:intergenic 25.0%
!! AAGGAAATTGTTACTGTTTT+AGG + chr2_1:19369657-19369676 None:intergenic 25.0%
!! TGTTCTAAACTATATATCGA+TGG + chr2_1:19369727-19369746 None:intergenic 25.0%
! ATATTTGTAATTGCTGAGTA+TGG + chr2_1:19369962-19369981 None:intergenic 25.0%
!! TCTGATAGCAATATACTTTT+GGG + chr2_1:19370015-19370034 None:intergenic 25.0%
!! TTCTGATAGCAATATACTTT+TGG + chr2_1:19370016-19370035 None:intergenic 25.0%
! ATGCATTGTTCAACTATATA+TGG - chr2_1:19370241-19370260 Msa0199950:CDS 25.0%
! TCCTACATAGATCTATTTAA+TGG - chr2_1:19370299-19370318 Msa0199950:CDS 25.0%
! TCCATTAAATAGATCTATGT+AGG + chr2_1:19370303-19370322 None:intergenic 25.0%
! ACATCATATAACTCACAATA+AGG + chr2_1:19370378-19370397 None:intergenic 25.0%
! TATAATGTTGTGTGTAAAAC+AGG - chr2_1:19370424-19370443 Msa0199950:intron 25.0%
! AACTGGAAAAAGAAAAATGA+CGG - chr2_1:19370505-19370524 Msa0199950:intron 25.0%
!!! GTTTTGTTTATTTGATGTTG+AGG - chr2_1:19370586-19370605 Msa0199950:intron 25.0%
! ATTTGTGATCTATGTATTAG+TGG - chr2_1:19370924-19370943 Msa0199950:intron 25.0%
! TCTTAAAAATTGAACTTCAC+CGG - chr2_1:19371121-19371140 Msa0199950:CDS 25.0%
!! AATATACGTCTTTATTTGTC+CGG + chr2_1:19371143-19371162 None:intergenic 25.0%
! AAAACCAAAAAATACTCGTA+GGG + chr2_1:19371187-19371206 None:intergenic 25.0%
! TTTACCAATGAATGTGTTTA+AGG - chr2_1:19371230-19371249 Msa0199950:CDS 25.0%
! TTACCAATGAATGTGTTTAA+GGG - chr2_1:19371231-19371250 Msa0199950:CDS 25.0%
!!! TATCCACTTTTAGATTTTCA+TGG - chr2_1:19371312-19371331 Msa0199950:CDS 25.0%
!!! ATCCACTTTTAGATTTTCAT+GGG - chr2_1:19371313-19371332 Msa0199950:CDS 25.0%
! AATAAATAGATCACATGGTA+AGG + chr2_1:19371436-19371455 None:intergenic 25.0%
! TTTGAATTTAATGGTGTAAC+GGG + chr2_1:19371523-19371542 None:intergenic 25.0%
! ACATAATAATCAATTAGGGT+TGG + chr2_1:19371779-19371798 None:intergenic 25.0%
! GTTATTGTCATAGATATTGT+TGG - chr2_1:19371851-19371870 Msa0199950:CDS 25.0%
!!! CTTTAAATTTAACTTTTGGC+AGG - chr2_1:19372108-19372127 Msa0199950:CDS 25.0%
! CCTGTTTATAAAAACTCTAT+AGG + chr2_1:19372301-19372320 None:intergenic 25.0%
!! CCTATAGAGTTTTTATAAAC+AGG - chr2_1:19372298-19372317 Msa0199950:intron 25.0%
! AAGAATCATTCTATGAATCT+TGG - chr2_1:19372428-19372447 Msa0199950:intron 25.0%
! GTAATATGAAATACTTGTTC+CGG + chr2_1:19372644-19372663 None:intergenic 25.0%
! ACAAGTATTTCATATTACTG+AGG - chr2_1:19372646-19372665 Msa0199950:intron 25.0%
! AAATTAACAACTTGGCTAAT+AGG + chr2_1:19373006-19373025 None:intergenic 25.0%
! GATATTCGAAATTAACAACT+TGG + chr2_1:19373014-19373033 None:intergenic 25.0%
!! CATGAAGTGTATAAAACTTT+TGG + chr2_1:19373226-19373245 None:intergenic 25.0%
! ACCAAAATGGAATAATTTGA+CGG + chr2_1:19373724-19373743 None:intergenic 25.0%
!! GTTTGTTTGAAATTTGTCTT+AGG - chr2_1:19374100-19374119 Msa0199950:intron 25.0%
! CAACTTAAAGAGAAAAATTC+AGG + chr2_1:19374704-19374723 None:intergenic 25.0%
!! TTAAGTTGTTAATGCTTGAT+TGG - chr2_1:19374716-19374735 Msa0199950:intron 25.0%
! AAAAATAACGACAATTTGGA+TGG - chr2_1:19375110-19375129 Msa0199950:intron 25.0%
! ATGTGATTAATTTCGTTATG+TGG - chr2_1:19375149-19375168 Msa0199950:intron 25.0%
! GGTTAATTACATTTAGTAGA+TGG + chr2_1:19375216-19375235 None:intergenic 25.0%
! CAAAAACATAAACCTTTCAT+AGG + chr2_1:19375392-19375411 None:intergenic 25.0%
!! CTATGAAAGGTTTATGTTTT+TGG - chr2_1:19375390-19375409 Msa0199950:CDS 25.0%
! TTACATAAGTCTAAAGGAAT+TGG + chr2_1:19375423-19375442 None:intergenic 25.0%
! GTTACATTACATAAGTCTAA+AGG + chr2_1:19375429-19375448 None:intergenic 25.0%
!!! GATACTAAAGCATTTTGAAA+GGG + chr2_1:19375535-19375554 None:intergenic 25.0%
!!! AGATACTAAAGCATTTTGAA+AGG + chr2_1:19375536-19375555 None:intergenic 25.0%
! AATGCTTTAGTATCTTGAAA+TGG - chr2_1:19375541-19375560 Msa0199950:intron 25.0%
! ATGCTTTAGTATCTTGAAAT+GGG - chr2_1:19375542-19375561 Msa0199950:intron 25.0%
! TCATGCTTAATTAAGATGTT+TGG - chr2_1:19375579-19375598 Msa0199950:intron 25.0%
TTACATGAATTTGGAGAAGA+GGG + chr2_1:19368872-19368891 None:intergenic 30.0%
TTTACATGAATTTGGAGAAG+AGG + chr2_1:19368873-19368892 None:intergenic 30.0%
!!! TGTTTTTTTTGTCGTGTAGT+TGG - chr2_1:19368990-19369009 Msa0199950:three_prime_UTR 30.0%
GTTTCTATTAATGTTGTCGT+AGG - chr2_1:19369026-19369045 Msa0199950:three_prime_UTR 30.0%
!! TATGAAGTTTGTTGTGTTTG+TGG - chr2_1:19369050-19369069 Msa0199950:three_prime_UTR 30.0%
AGAAGAGAAAAACTTGTCAT+AGG - chr2_1:19369080-19369099 Msa0199950:three_prime_UTR 30.0%
TTATTTATGCTACCTTGGTT+TGG - chr2_1:19369252-19369271 Msa0199950:intron 30.0%
GATAGATGTTAGTAAGTTAG+TGG - chr2_1:19369486-19369505 Msa0199950:CDS 30.0%
TATTATATATGACACAGACC+TGG - chr2_1:19369876-19369895 Msa0199950:CDS 30.0%
! ATACTTTTGGGCAAATTCAA+TGG + chr2_1:19370003-19370022 None:intergenic 30.0%
TGAGTTATATGATGTCAAAC+AGG - chr2_1:19370383-19370402 Msa0199950:CDS 30.0%
ACTGGAAAAAGAAAAATGAC+GGG - chr2_1:19370506-19370525 Msa0199950:intron 30.0%
! AATGTTTAGCTTAACCCTTA+AGG - chr2_1:19370867-19370886 Msa0199950:intron 30.0%
GCAAATAGTAAAGTGACTTT+CGG - chr2_1:19370996-19371015 Msa0199950:intron 30.0%
!! GGTGAAGTTCAATTTTTAAG+AGG + chr2_1:19371122-19371141 None:intergenic 30.0%
GAAAACCAAAAAATACTCGT+AGG + chr2_1:19371188-19371207 None:intergenic 30.0%
!!! GAGTATTTTTTGGTTTTCTG+AGG - chr2_1:19371190-19371209 Msa0199950:CDS 30.0%
AACACATTCATTGGTAAACA+AGG + chr2_1:19371228-19371247 None:intergenic 30.0%
ATACCCTTAAACACATTCAT+TGG + chr2_1:19371237-19371256 None:intergenic 30.0%
!!! GCTTGTTTTAGAGACAAATT+TGG + chr2_1:19371287-19371306 None:intergenic 30.0%
AACCCATGAAAATCTAAAAG+TGG + chr2_1:19371318-19371337 None:intergenic 30.0%
! ATGTAGTGTTGTTACACATT+AGG - chr2_1:19371795-19371814 Msa0199950:intron 30.0%
GGATAATACTATCAACCTAT+TGG - chr2_1:19371816-19371835 Msa0199950:intron 30.0%
GGAATGAAAATAGGTATCTA+CGG + chr2_1:19371890-19371909 None:intergenic 30.0%
ACAGTAAAGGGAATGAAAAT+AGG + chr2_1:19371899-19371918 None:intergenic 30.0%
ATGAGCTTAATACACTTGAT+TGG - chr2_1:19371975-19371994 Msa0199950:CDS 30.0%
TGAGCTTAATACACTTGATT+GGG - chr2_1:19371976-19371995 Msa0199950:CDS 30.0%
AATACCCCTACTATACAAAA+TGG - chr2_1:19372022-19372041 Msa0199950:CDS 30.0%
! TACCTCCATTTTGTATAGTA+GGG + chr2_1:19372030-19372049 None:intergenic 30.0%
! TTACCTCCATTTTGTATAGT+AGG + chr2_1:19372031-19372050 None:intergenic 30.0%
!! TGATTTAGTTGATAGTAACG+CGG + chr2_1:19372141-19372160 None:intergenic 30.0%
TAAAGAACGCAAATGAAAGA+AGG + chr2_1:19372203-19372222 None:intergenic 30.0%
TATCACTAGAAGACAGAAAA+AGG + chr2_1:19372246-19372265 None:intergenic 30.0%
! AGTTTTTATAAACAGGTTGC+TGG - chr2_1:19372305-19372324 Msa0199950:intron 30.0%
TTTGATCGTTAACACTTTCT+GGG + chr2_1:19372409-19372428 None:intergenic 30.0%
! TTTTGATCGTTAACACTTTC+TGG + chr2_1:19372410-19372429 None:intergenic 30.0%
AATCATTCTATGAATCTTGG+TGG - chr2_1:19372431-19372450 Msa0199950:intron 30.0%
! TTCATTGACTAAAGTGTCAA+CGG + chr2_1:19372465-19372484 None:intergenic 30.0%
TAATCAACAATCTTCTCTTC+CGG - chr2_1:19372622-19372641 Msa0199950:intron 30.0%
AGTATTTCATATTACTGAGG+TGG - chr2_1:19372649-19372668 Msa0199950:intron 30.0%
CAAAATAATGGTAGGAAAGA+AGG + chr2_1:19372763-19372782 None:intergenic 30.0%
AGAGAAAATATCCAGTTACT+AGG + chr2_1:19372828-19372847 None:intergenic 30.0%
ACATTATATTGGACTTTGCA+AGG + chr2_1:19372864-19372883 None:intergenic 30.0%
AAATAGAGATTCACAAATCC+AGG + chr2_1:19372964-19372983 None:intergenic 30.0%
TTGAATTTCGTCTTCAAATG+AGG - chr2_1:19373088-19373107 Msa0199950:intron 30.0%
TTCACTAGAGAAAACATCAA+GGG + chr2_1:19373145-19373164 None:intergenic 30.0%
!! GGAAAGAAATAATGTTTTGG+AGG + chr2_1:19373205-19373224 None:intergenic 30.0%
!!! CTTTTGGAACGTATTGTTTT+AGG - chr2_1:19373333-19373352 Msa0199950:intron 30.0%
CACACAAATGAATTACACTT+TGG + chr2_1:19373389-19373408 None:intergenic 30.0%
AATTCATTTGTGTGCAATGT+TGG - chr2_1:19373395-19373414 Msa0199950:intron 30.0%
ATTCATTTGTGTGCAATGTT+GGG - chr2_1:19373396-19373415 Msa0199950:intron 30.0%
AATCTGTTTGTTCAAACAAG+TGG + chr2_1:19373542-19373561 None:intergenic 30.0%
ACTTAGGAGACAAAATTGAT+GGG + chr2_1:19373602-19373621 None:intergenic 30.0%
TACTTAGGAGACAAAATTGA+TGG + chr2_1:19373603-19373622 None:intergenic 30.0%
! GACGGATTTCATTTAGTTTA+TGG + chr2_1:19373706-19373725 None:intergenic 30.0%
! TCCGTCAAATTATTCCATTT+TGG - chr2_1:19373720-19373739 Msa0199950:CDS 30.0%
CTTGTTAGTATACACCAAAA+TGG + chr2_1:19373737-19373756 None:intergenic 30.0%
GTATACTAACAAGAGATACT+AGG - chr2_1:19373744-19373763 Msa0199950:intron 30.0%
TAGTTTAGAGACTAACTTGA+CGG - chr2_1:19373789-19373808 Msa0199950:intron 30.0%
ATATAGTTTAGAGACCAAAC+AGG - chr2_1:19373846-19373865 Msa0199950:intron 30.0%
GAAGCAATGTCAGAAAAATT+GGG + chr2_1:19373908-19373927 None:intergenic 30.0%
TGAAGCAATGTCAGAAAAAT+TGG + chr2_1:19373909-19373928 None:intergenic 30.0%
! ATCATTAAGTTAAGCACTGT+AGG - chr2_1:19373996-19374015 Msa0199950:CDS 30.0%
! TCATTAAGTTAAGCACTGTA+GGG - chr2_1:19373997-19374016 Msa0199950:CDS 30.0%
AAACAATGATATTTCCGTTC+AGG + chr2_1:19374080-19374099 None:intergenic 30.0%
AATTTGTCTTAGGGAGAATA+TGG - chr2_1:19374110-19374129 Msa0199950:intron 30.0%
GCTTATATGAAAGGATATGA+CGG - chr2_1:19374222-19374241 Msa0199950:intron 30.0%
!! TTATCTTTCAGAAAAGTGTC+TGG - chr2_1:19374254-19374273 Msa0199950:intron 30.0%
ATGTATCCTTTAAGTACACT+TGG + chr2_1:19374377-19374396 None:intergenic 30.0%
AGTGTACTTAAAGGATACAT+TGG - chr2_1:19374377-19374396 Msa0199950:intron 30.0%
ACTAAAATTGCGATATCAGT+CGG - chr2_1:19374461-19374480 Msa0199950:intron 30.0%
! ATTGGTTATATTTTCGATGC+AGG - chr2_1:19374734-19374753 Msa0199950:intron 30.0%
GGCAATATCGTAAAATTCTA+TGG - chr2_1:19374784-19374803 Msa0199950:intron 30.0%
GATTAATTTCGTTATGTGGA+TGG - chr2_1:19375153-19375172 Msa0199950:intron 30.0%
ACATCATAAGTTCCTATGAA+AGG - chr2_1:19375377-19375396 Msa0199950:CDS 30.0%
TGCTTAATTAAGATGTTTGG+TGG - chr2_1:19375582-19375601 Msa0199950:intron 30.0%
ACTGTAACTGTGAACAGAAA+AGG + chr2_1:19368952-19368971 None:intergenic 35.0%
AGTTGTCAAAGATTTGAGGA+AGG + chr2_1:19369452-19369471 None:intergenic 35.0%
TTAACTCACCAACCGATTAA+GGG - chr2_1:19369575-19369594 Msa0199950:CDS 35.0%
TGAGTAGAATCAGAAACATG+TGG - chr2_1:19369779-19369798 Msa0199950:intron 35.0%
TATTGCTATCAGAACTAACC+TGG - chr2_1:19370022-19370041 Msa0199950:CDS 35.0%
AGGCTTCAACAAGAACTAAA+GGG + chr2_1:19370165-19370184 None:intergenic 35.0%
AAGGCTTCAACAAGAACTAA+AGG + chr2_1:19370166-19370185 None:intergenic 35.0%
AATGTTGTGTGTAAAACAGG+TGG - chr2_1:19370427-19370446 Msa0199950:intron 35.0%
TTAGGAACTTCCGAAAAGAT+GGG - chr2_1:19370479-19370498 Msa0199950:intron 35.0%
ATCCACGTATATTATGCACA+CGG - chr2_1:19370785-19370804 Msa0199950:intron 35.0%
! GCTTTGTTCGAAGATGTTAT+TGG - chr2_1:19370822-19370841 Msa0199950:intron 35.0%
TATAGGAATCGAGACCTTAA+GGG + chr2_1:19370884-19370903 None:intergenic 35.0%
ATATAGGAATCGAGACCTTA+AGG + chr2_1:19370885-19370904 None:intergenic 35.0%
!! TTGTTTTTCTTTCAGGAGTC+TGG - chr2_1:19371028-19371047 Msa0199950:CDS 35.0%
TCATTATCGTGAAACACAAG+AGG - chr2_1:19371067-19371086 Msa0199950:CDS 35.0%
!!! AAGACCCTACGAGTATTTTT+TGG - chr2_1:19371180-19371199 Msa0199950:CDS 35.0%
! AACGAAGTTTTTCTAGACTC+GGG + chr2_1:19371260-19371279 None:intergenic 35.0%
! CAACGAAGTTTTTCTAGACT+CGG + chr2_1:19371261-19371280 None:intergenic 35.0%
! TCATCTAAAGTGAGCAAGAA+AGG + chr2_1:19371371-19371390 None:intergenic 35.0%
ACATATCAATCATGAGTCTC+GGG + chr2_1:19371403-19371422 None:intergenic 35.0%
CACATATCAATCATGAGTCT+CGG + chr2_1:19371404-19371423 None:intergenic 35.0%
GGACTCGCATTTGAATTTAA+TGG + chr2_1:19371532-19371551 None:intergenic 35.0%
AAGTCTTCTGATAGAATCCA+TGG + chr2_1:19371574-19371593 None:intergenic 35.0%
ATGGATTCTATCAGAAGACT+TGG - chr2_1:19371573-19371592 Msa0199950:CDS 35.0%
AAAATAGGTATCTACGGTCA+AGG + chr2_1:19371884-19371903 None:intergenic 35.0%
! ACCTCCATTTTGTATAGTAG+GGG + chr2_1:19372029-19372048 None:intergenic 35.0%
CTAAATCAAAGCTTACCGAA+TGG - chr2_1:19372153-19372172 Msa0199950:CDS 35.0%
GTTGACACTTTAGTCAATGA+AGG - chr2_1:19372464-19372483 Msa0199950:intron 35.0%
TTGCAAAGTCAGATTACCTT+TGG - chr2_1:19372488-19372507 Msa0199950:CDS 35.0%
AGAACATGGTGTGTAAGATA+CGG + chr2_1:19372531-19372550 None:intergenic 35.0%
AATGGATCAGTAACAGATGA+AGG + chr2_1:19372584-19372603 None:intergenic 35.0%
! TACTGATCCATTTTCATCAC+TGG - chr2_1:19372592-19372611 Msa0199950:intron 35.0%
TTCTTCCACTGAGAAAACAA+AGG - chr2_1:19372685-19372704 Msa0199950:intron 35.0%
TCCAATATAATGTGTGTCTG+TGG - chr2_1:19372871-19372890 Msa0199950:intron 35.0%
TGTTCCTGTAGAAATTGTTC+AGG - chr2_1:19372903-19372922 Msa0199950:CDS 35.0%
CTTCACTAGAGAAAACATCA+AGG + chr2_1:19373146-19373165 None:intergenic 35.0%
! GTATTTTTCGCTTGCAGAAA+GGG + chr2_1:19373273-19373292 None:intergenic 35.0%
TTTCAACGCAATTTCGAACA+AGG + chr2_1:19373295-19373314 None:intergenic 35.0%
TTGCGTTGAAAAACAAACTC+AGG - chr2_1:19373304-19373323 Msa0199950:intron 35.0%
TGCGTTGAAAAACAAACTCA+GGG - chr2_1:19373305-19373324 Msa0199950:intron 35.0%
TGAAAAACAAACTCAGGGAA+TGG - chr2_1:19373310-19373329 Msa0199950:intron 35.0%
TGCAATGTTGGGATATACTT+GGG - chr2_1:19373407-19373426 Msa0199950:intron 35.0%
!!! ATTACTTTGTTTTCGTGGTC+AGG - chr2_1:19373432-19373451 Msa0199950:intron 35.0%
GATACTAGGAACTAAAGAAG+CGG - chr2_1:19373758-19373777 Msa0199950:intron 35.0%
!! CTAACTTGACGGATTTCATA+TGG - chr2_1:19373800-19373819 Msa0199950:intron 35.0%
AATTGGGTAAACCATCCATT+TGG + chr2_1:19373892-19373911 None:intergenic 35.0%
!! TTAAGCACTGTAGGGTTTTT+AGG - chr2_1:19374005-19374024 Msa0199950:CDS 35.0%
AGGCTCATAACTAGATTAGA+AGG + chr2_1:19374060-19374079 None:intergenic 35.0%
AATCTAGTTATGAGCCTGAA+CGG - chr2_1:19374063-19374082 Msa0199950:intron 35.0%
GCTGATCTTGCTTATATGAA+AGG - chr2_1:19374213-19374232 Msa0199950:intron 35.0%
ATTTACTGGATCAGATGTAG+TGG + chr2_1:19374334-19374353 None:intergenic 35.0%
! TTTTCATTGCTGCTACTATC+TGG + chr2_1:19374518-19374537 None:intergenic 35.0%
!! CTTTGAGACAAGAAAAGCAA+TGG - chr2_1:19374557-19374576 Msa0199950:CDS 35.0%
CGTAAAATTCTATGGTCTGT+TGG - chr2_1:19374792-19374811 Msa0199950:intron 35.0%
!!! CGTTGGCTTTTAAAGAGAAA+AGG - chr2_1:19374837-19374856 Msa0199950:intron 35.0%
TTAAAGAGAAAAGGTTTCCG+TGG - chr2_1:19374846-19374865 Msa0199950:intron 35.0%
TAAAGAGAAAAGGTTTCCGT+GGG - chr2_1:19374847-19374866 Msa0199950:intron 35.0%
! CTTGTTGTGCTTTCTTAGAA+CGG + chr2_1:19375007-19375026 None:intergenic 35.0%
AGAACTCATCAATTCTGATG+TGG - chr2_1:19375337-19375356 Msa0199950:intron 35.0%
TTAGCTCAATTTGCACACTA+TGG + chr2_1:19375509-19375528 None:intergenic 35.0%
ATGGCACAAAACAACTTCAC+AGG - chr2_1:19369111-19369130 Msa0199950:three_prime_UTR 40.0%
!! CTTGTTGGTTCAGAGATACA+TGG - chr2_1:19369138-19369157 Msa0199950:exon 40.0%
ATGCATTGTACTACCTCTCA+AGG + chr2_1:19369172-19369191 None:intergenic 40.0%
!!! TGGTTGCGTTAGTTTTGTCA+GGG - chr2_1:19369506-19369525 Msa0199950:CDS 40.0%
! TTTTGTCAGGGTTTGAACTC+AGG - chr2_1:19369518-19369537 Msa0199950:CDS 40.0%
!! CTTAATCGGTTGGTGAGTTA+AGG + chr2_1:19369576-19369595 None:intergenic 40.0%
CTTAACTCACCAACCGATTA+AGG - chr2_1:19369574-19369593 Msa0199950:CDS 40.0%
TTGTAACCGGTACCCTTAAT+CGG + chr2_1:19369590-19369609 None:intergenic 40.0%
AGTATGGCGTGAATCTCATT+CGG + chr2_1:19369946-19369965 None:intergenic 40.0%
GCAAATTCAATGGCTTGACA+TGG + chr2_1:19369993-19370012 None:intergenic 40.0%
CTAACCTGGTGTTTCTTTAG+TGG - chr2_1:19370036-19370055 Msa0199950:CDS 40.0%
GAATCCACTAAAGAAACACC+AGG + chr2_1:19370043-19370062 None:intergenic 40.0%
TATTTGACCGCAAGATGCTT+AGG - chr2_1:19370461-19370480 Msa0199950:intron 40.0%
CTTAGGAACTTCCGAAAAGA+TGG - chr2_1:19370478-19370497 Msa0199950:intron 40.0%
CTCATGAGCACTTAAAAGTG+AGG - chr2_1:19370545-19370564 Msa0199950:intron 40.0%
AACATCTTCGAACAAAGCCT+GGG + chr2_1:19370820-19370839 None:intergenic 40.0%
TAACATCTTCGAACAAAGCC+TGG + chr2_1:19370821-19370840 None:intergenic 40.0%
GTGTTTCACGATAATGAACC+AGG + chr2_1:19371064-19371083 None:intergenic 40.0%
! TGCTAACATTCGTTAGGTTG+TGG - chr2_1:19371475-19371494 Msa0199950:CDS 40.0%
GGTGCAGTTGTATCAGAAAT+AGG + chr2_1:19371553-19371572 None:intergenic 40.0%
TTTCTGATACAACTGCACCA+TGG - chr2_1:19371554-19371573 Msa0199950:CDS 40.0%
CTATCAGAAGACTTGGATTC+TGG - chr2_1:19371580-19371599 Msa0199950:CDS 40.0%
! CATTCCCTTTACTGTTTTCG+AGG - chr2_1:19371904-19371923 Msa0199950:CDS 40.0%
CCTACCTCGAAAACAGTAAA+GGG + chr2_1:19371911-19371930 None:intergenic 40.0%
ACCTACCTCGAAAACAGTAA+AGG + chr2_1:19371912-19371931 None:intergenic 40.0%
!! GTTTTCGAGGTAGGTCTTAA+TGG - chr2_1:19371917-19371936 Msa0199950:CDS 40.0%
ACTTGATTGGGATGAACTAG+TGG - chr2_1:19371988-19372007 Msa0199950:CDS 40.0%
ACCCCTACTATACAAAATGG+AGG - chr2_1:19372025-19372044 Msa0199950:CDS 40.0%
TTCTGCTTTATCAGAGCCAA+TGG - chr2_1:19372055-19372074 Msa0199950:CDS 40.0%
ACATTGTCAAAGCTGCCATT+CGG + chr2_1:19372171-19372190 None:intergenic 40.0%
CAGTTGTACGAGTACAAAGT+CGG + chr2_1:19372269-19372288 None:intergenic 40.0%
TCCTCAGAAATTCCTACGTA+TGG - chr2_1:19372335-19372354 Msa0199950:intron 40.0%
ACCATACGTAGGAATTTCTG+AGG + chr2_1:19372339-19372358 None:intergenic 40.0%
GGAGTTAGAATACCATACGT+AGG + chr2_1:19372350-19372369 None:intergenic 40.0%
ATTGTTCATCCACGTTCCAA+AGG + chr2_1:19372507-19372526 None:intergenic 40.0%
TTACACACCATGTTCTGTAG+AGG - chr2_1:19372535-19372554 Msa0199950:CDS 40.0%
! TCCATTTTCATCACTGGTGA+TGG - chr2_1:19372598-19372617 Msa0199950:intron 40.0%
TCCATCACCAGTGATGAAAA+TGG + chr2_1:19372602-19372621 None:intergenic 40.0%
!!! GGAAACCTTTGTTTTCTCAG+TGG + chr2_1:19372693-19372712 None:intergenic 40.0%
TAGGACCTGCAAGAAGTAAA+GGG + chr2_1:19372809-19372828 None:intergenic 40.0%
GCCACAGACACACATTATAT+TGG + chr2_1:19372875-19372894 None:intergenic 40.0%
CCAACCTGAACAATTTCTAC+AGG + chr2_1:19372910-19372929 None:intergenic 40.0%
CCTGTAGAAATTGTTCAGGT+TGG - chr2_1:19372907-19372926 Msa0199950:CDS 40.0%
TTCACAAATCCAGGAGAATG+CGG + chr2_1:19372955-19372974 None:intergenic 40.0%
CAACTTGGCTAATAGGCTTA+TGG + chr2_1:19372999-19373018 None:intergenic 40.0%
AGTGGAAGAGACATACAACT+GGG - chr2_1:19373065-19373084 Msa0199950:intron 40.0%
GAGAAAACATCAAGGGTCTT+CGG + chr2_1:19373138-19373157 None:intergenic 40.0%
TTAGTCTCTTTCAGTGCAGT+AGG + chr2_1:19373174-19373193 None:intergenic 40.0%
! GGTATTTTTCGCTTGCAGAA+AGG + chr2_1:19373274-19373293 None:intergenic 40.0%
ACTACTGAGTATGATGCACA+AGG - chr2_1:19373363-19373382 Msa0199950:intron 40.0%
GTGCAATGTTGGGATATACT+TGG - chr2_1:19373406-19373425 Msa0199950:intron 40.0%
!!! GGGCTATTACTTTGTTTTCG+TGG - chr2_1:19373427-19373446 Msa0199950:intron 40.0%
ATTTCCGCGACAAATTTGGA+TGG - chr2_1:19373466-19373485 Msa0199950:intron 40.0%
CTTCATTGGGCAGCATATAA+TGG - chr2_1:19373495-19373514 Msa0199950:intron 40.0%
GTTTGTTCAAACAAGTGGAG+TGG + chr2_1:19373537-19373556 None:intergenic 40.0%
TAGCAGTGAGAGTGATACTT+AGG + chr2_1:19373618-19373637 None:intergenic 40.0%
! GACGGATTTCATATGGTTCA+AGG - chr2_1:19373807-19373826 Msa0199950:intron 40.0%
AAGTATCACACTCTCCTGTT+TGG + chr2_1:19373863-19373882 None:intergenic 40.0%
GTGATACTTGAGAGACCAAA+TGG - chr2_1:19373874-19373893 Msa0199950:intron 40.0%
TACTTGAGAGACCAAATGGA+TGG - chr2_1:19373878-19373897 Msa0199950:intron 40.0%
GTTGGATCTGTCACCAAATT+GGG + chr2_1:19374165-19374184 None:intergenic 40.0%
AGTTGGATCTGTCACCAAAT+TGG + chr2_1:19374166-19374185 None:intergenic 40.0%
TTCAATGACATGAGCTTAGC+TGG - chr2_1:19374285-19374304 Msa0199950:intron 40.0%
AGCTTAGCTGGAAATATCAG+TGG - chr2_1:19374297-19374316 Msa0199950:intron 40.0%
GTAAGGTTCTCAGCATTTAC+TGG + chr2_1:19374348-19374367 None:intergenic 40.0%
AAATGCTGAGAACCTTACAG+AGG - chr2_1:19374350-19374369 Msa0199950:intron 40.0%
AGAGGACCAAGTGTACTTAA+AGG - chr2_1:19374368-19374387 Msa0199950:intron 40.0%
GGTTCAATTTATCAGTCCAG+AGG - chr2_1:19374482-19374501 Msa0199950:intron 40.0%
TCAATTTATCAGTCCAGAGG+AGG - chr2_1:19374485-19374504 Msa0199950:intron 40.0%
TCTTGTCTCAAAGTTGCGAA+AGG + chr2_1:19374550-19374569 None:intergenic 40.0%
TTGAGAAAGTAATCCTGCGT+TGG - chr2_1:19374820-19374839 Msa0199950:intron 40.0%
! TTCTCTTTAAAAGCCAACGC+AGG + chr2_1:19374836-19374855 None:intergenic 40.0%
TCATCTTTCATGTCTTCGTC+CGG + chr2_1:19374885-19374904 None:intergenic 40.0%
AGACATGAAAGATGAGAAGC+AGG - chr2_1:19374890-19374909 Msa0199950:intron 40.0%
!! GAAGAGGACTTCTTTAAGAC+TGG - chr2_1:19374924-19374943 Msa0199950:intron 40.0%
!! AGGACTTCTTTAAGACTGGT+AGG - chr2_1:19374928-19374947 Msa0199950:intron 40.0%
TAAGACTGGTAGGAAACAAG+CGG - chr2_1:19374938-19374957 Msa0199950:intron 40.0%
TGCTTTCTTAGAACGGAACA+TGG + chr2_1:19375000-19375019 None:intergenic 40.0%
! AAGCACAACAAGAGTATAGC+AGG - chr2_1:19375015-19375034 Msa0199950:intron 40.0%
AGAGTATAGCAGGATGAAGA+TGG - chr2_1:19375025-19375044 Msa0199950:intron 40.0%
GTAGAATTGCTTTGTGCAGT+TGG - chr2_1:19375301-19375320 Msa0199950:intron 40.0%
! AGATGTTTGGTGGATGTTTC+TGG - chr2_1:19375592-19375611 Msa0199950:intron 40.0%
! AGAAGAGGGTCTGTTCTGAA+TGG + chr2_1:19368858-19368877 None:intergenic 45.0%
CTTGTCATAGGCTGTGATGA+TGG - chr2_1:19369092-19369111 Msa0199950:three_prime_UTR 45.0%
AACTTCACAGGACAGCTTGT+TGG - chr2_1:19369123-19369142 Msa0199950:exon 45.0%
TTGTACTACCTCTCAAGGTG+TGG + chr2_1:19369167-19369186 None:intergenic 45.0%
!!! GTGGTTGCGTTAGTTTTGTC+AGG - chr2_1:19369505-19369524 Msa0199950:CDS 45.0%
TATGACACAGACCTGGATGT+CGG - chr2_1:19369883-19369902 Msa0199950:CDS 45.0%
!!! TCTGCTTTTTGCTTCCTCCA+GGG + chr2_1:19369914-19369933 None:intergenic 45.0%
!!! ATCTGCTTTTTGCTTCCTCC+AGG + chr2_1:19369915-19369934 None:intergenic 45.0%
TGGAGGAAGCAAAAAGCAGA+TGG - chr2_1:19369914-19369933 Msa0199950:CDS 45.0%
GGAAGTTCCTAAGCATCTTG+CGG + chr2_1:19370471-19370490 None:intergenic 45.0%
! TCCAGTTGTGCCCATCTTTT+CGG + chr2_1:19370492-19370511 None:intergenic 45.0%
CTTATTTCCCCCTGTCAATC+AGG - chr2_1:19370745-19370764 Msa0199950:intron 45.0%
TTACCAACCTGATTGACAGG+GGG + chr2_1:19370755-19370774 None:intergenic 45.0%
GTTACCAACCTGATTGACAG+GGG + chr2_1:19370756-19370775 None:intergenic 45.0%
CGTTACCAACCTGATTGACA+GGG + chr2_1:19370757-19370776 None:intergenic 45.0%
TCGTTACCAACCTGATTGAC+AGG + chr2_1:19370758-19370777 None:intergenic 45.0%
GAACAAAGCCTGGGTTATCT+TGG + chr2_1:19370811-19370830 None:intergenic 45.0%
!! TGGGCTTGCTAACATTCGTT+AGG - chr2_1:19371469-19371488 Msa0199950:CDS 45.0%
ACCAGCAGTGCTTATACGAA+TGG - chr2_1:19371604-19371623 Msa0199950:CDS 45.0%
! ACCATTCGTATAAGCACTGC+TGG + chr2_1:19371608-19371627 None:intergenic 45.0%
!! CCCTTTACTGTTTTCGAGGT+AGG - chr2_1:19371908-19371927 Msa0199950:CDS 45.0%
!! ATCAGAGCCAATGGCTTGTT+CGG - chr2_1:19372064-19372083 Msa0199950:CDS 45.0%
GTTCTTTCCGAACAAGCCAT+TGG + chr2_1:19372074-19372093 None:intergenic 45.0%
!! GTCAGATTACCTTTGGAACG+TGG - chr2_1:19372495-19372514 Msa0199950:CDS 45.0%
CTAGGACCTGCAAGAAGTAA+AGG + chr2_1:19372810-19372829 None:intergenic 45.0%
TTCTTGCAGGTCCTAGTAAC+TGG - chr2_1:19372814-19372833 Msa0199950:intron 45.0%
CAGTGGAAGAGACATACAAC+TGG - chr2_1:19373064-19373083 Msa0199950:intron 45.0%
! TTTTTCGCTTGCAGAAAGGG+AGG + chr2_1:19373270-19373289 None:intergenic 45.0%
! CAAACTCAGGGAATGGCTTT+TGG - chr2_1:19373317-19373336 Msa0199950:intron 45.0%
CTGGATTTCCGCGACAAATT+TGG - chr2_1:19373462-19373481 Msa0199950:CDS 45.0%
CTGTCCATCCAAATTTGTCG+CGG + chr2_1:19373473-19373492 None:intergenic 45.0%
TTGGATGGACAGCTCTTCAT+TGG - chr2_1:19373481-19373500 Msa0199950:intron 45.0%
TGGATGGACAGCTCTTCATT+GGG - chr2_1:19373482-19373501 Msa0199950:intron 45.0%
GTTGCTACGTTGTTGTCTTG+TGG - chr2_1:19374132-19374151 Msa0199950:intron 45.0%
TTGTGGAGCAAAGCCCAATT+TGG - chr2_1:19374149-19374168 Msa0199950:intron 45.0%
CTGGATCAGATGTAGTGGTT+TGG + chr2_1:19374329-19374348 None:intergenic 45.0%
AGTACACTTGGTCCTCTGTA+AGG + chr2_1:19374365-19374384 None:intergenic 45.0%
AGGATACATTGGCAGCTTAC+CGG - chr2_1:19374388-19374407 Msa0199950:intron 45.0%
ACGCATACAAGCAGCGTTTA+GGG - chr2_1:19374431-19374450 Msa0199950:intron 45.0%
TCCAGTACAGATTCCGTTCA+TGG - chr2_1:19374595-19374614 Msa0199950:CDS 45.0%
TCCATGAACGGAATCTGTAC+TGG + chr2_1:19374599-19374618 None:intergenic 45.0%
CTCTACGCAACTTCCATGAA+CGG + chr2_1:19374611-19374630 None:intergenic 45.0%
! TTAGAGGCTTTCAAGTGCGT+AGG - chr2_1:19374763-19374782 Msa0199950:intron 45.0%
GATGGCACATAGTCAAGCAA+AGG - chr2_1:19375043-19375062 Msa0199950:intron 45.0%
!!! TTTTTTTTTATTTTTTTTTG+TGG - chr2_1:19369285-19369304 Msa0199950:intron 5.0%
!!! TTATTATTTTTATAAACTTT+AGG + chr2_1:19373647-19373666 None:intergenic 5.0%
CATGGATTCCACACCTTGAG+AGG - chr2_1:19369156-19369175 Msa0199950:CDS 50.0%
! CACCAACCGATTAAGGGTAC+CGG - chr2_1:19369581-19369600 Msa0199950:CDS 50.0%
AACCGGTACCCTTAATCGGT+TGG + chr2_1:19369586-19369605 None:intergenic 50.0%
TCCGAAAAGATGGGCACAAC+TGG - chr2_1:19370488-19370507 Msa0199950:intron 50.0%
TTTCCCCCTGTCAATCAGGT+TGG - chr2_1:19370749-19370768 Msa0199950:intron 50.0%
GGCCGTGTGCATAATATACG+TGG + chr2_1:19370790-19370809 None:intergenic 50.0%
ATTCTAACTCCGCCAGAGTC+TGG - chr2_1:19372359-19372378 Msa0199950:CDS 50.0%
TTCTAACTCCGCCAGAGTCT+GGG - chr2_1:19372360-19372379 Msa0199950:CDS 50.0%
ACATTACTGCTCCCAGACTC+TGG + chr2_1:19372374-19372393 None:intergenic 50.0%
GTTGACGCCTCTACAGAACA+TGG + chr2_1:19372545-19372564 None:intergenic 50.0%
AGTGGAAGAAACCCACGAAG+GGG + chr2_1:19372675-19372694 None:intergenic 50.0%
CAGTGGAAGAAACCCACGAA+GGG + chr2_1:19372676-19372695 None:intergenic 50.0%
TCAGTGGAAGAAACCCACGA+AGG + chr2_1:19372677-19372696 None:intergenic 50.0%
CTGCAAGAAGTAAAGGGCCA+TGG + chr2_1:19372803-19372822 None:intergenic 50.0%
CATGGCCCTTTACTTCTTGC+AGG - chr2_1:19372801-19372820 Msa0199950:intron 50.0%
AGGTTGGAGTTTACCGATGC+TGG - chr2_1:19372923-19372942 Msa0199950:CDS 50.0%
GGTTGGAGTTTACCGATGCT+GGG - chr2_1:19372924-19372943 Msa0199950:CDS 50.0%
AATGCGGCATTACCCAGCAT+CGG + chr2_1:19372939-19372958 None:intergenic 50.0%
GCAGCAGGATCGTGCAAAAT+AGG + chr2_1:19373042-19373061 None:intergenic 50.0%
GATCCAACTACCGAATACCC+TGG - chr2_1:19374177-19374196 Msa0199950:intron 50.0%
! AGTACAGCCACCAGGGTATT+CGG + chr2_1:19374190-19374209 None:intergenic 50.0%
CACGCATACAAGCAGCGTTT+AGG - chr2_1:19374430-19374449 Msa0199950:intron 50.0%
TAATAGCCTGACGTCGCATG+TGG + chr2_1:19374641-19374660 None:intergenic 50.0%
TCGATGCAGGCTGCATTTAG+AGG - chr2_1:19374747-19374766 Msa0199950:intron 50.0%
AAAAGGTTTCCGTGGGCTTG+AGG - chr2_1:19374854-19374873 Msa0199950:intron 50.0%
GCAGGAAAGCGATGTAGAAG+AGG - chr2_1:19374908-19374927 Msa0199950:intron 50.0%
AGAACGCGTTGAGAGATCTG+TGG - chr2_1:19374962-19374981 Msa0199950:intron 50.0%
! GAGTCTGGAGCACATAGTCC+TGG - chr2_1:19371043-19371062 Msa0199950:CDS 55.0%
TTACTGCTCCCAGACTCTGG+CGG + chr2_1:19372371-19372390 None:intergenic 55.0%
TGGGTAATGCCGCATTCTCC+TGG - chr2_1:19372943-19372962 Msa0199950:CDS 55.0%
GTCTCTTCCACTGAAGCAGC+AGG + chr2_1:19373057-19373076 None:intergenic 55.0%
! CCACCAGGGTATTCGGTAGT+TGG + chr2_1:19374183-19374202 None:intergenic 55.0%
CCAACTACCGAATACCCTGG+TGG - chr2_1:19374180-19374199 Msa0199950:intron 55.0%
! TTGTATGCGTGCTGCTGCCT+CGG + chr2_1:19374421-19374440 None:intergenic 55.0%
TCTGTACTGGATCCGAGCAG+CGG + chr2_1:19374586-19374605 None:intergenic 55.0%
GTTTCTCCACATGCGACGTC+AGG - chr2_1:19374632-19374651 Msa0199950:intron 55.0%
GCACACGGCCAAGATAACCC+AGG - chr2_1:19370800-19370819 Msa0199950:intron 60.0%
TTACTGAGGTGGCCCCTTCG+TGG - chr2_1:19372660-19372679 Msa0199950:intron 60.0%
TACTGAGGTGGCCCCTTCGT+GGG - chr2_1:19372661-19372680 Msa0199950:intron 60.0%
! GCACGATCCTGCTGCTTCAG+TGG - chr2_1:19373047-19373066 Msa0199950:intron 60.0%
TTCGTGGTCAGGCTTGTCGC+TGG - chr2_1:19373443-19373462 Msa0199950:CDS 60.0%
CAGCAGCAGTACAGCCACCA+GGG + chr2_1:19374197-19374216 None:intergenic 60.0%
TCAGCAGCAGTACAGCCACC+AGG + chr2_1:19374198-19374217 None:intergenic 60.0%
AGCTTACCGGACAACAGCCG+AGG - chr2_1:19374401-19374420 Msa0199950:intron 60.0%
ATCTGGCGTGCTTCCTCCTC+TGG + chr2_1:19374501-19374520 None:intergenic 60.0%
AAGCAATGGCAGCCGCTGCT+CGG - chr2_1:19374571-19374590 Msa0199950:CDS 60.0%
CCGGATTCACCTCAAGCCCA+CGG + chr2_1:19374866-19374885 None:intergenic 60.0%
CCGTGGGCTTGAGGTGAATC+CGG - chr2_1:19374863-19374882 Msa0199950:intron 60.0%
CCAGGGTTTCGCCGACATCC+AGG + chr2_1:19369897-19369916 None:intergenic 65.0%
CCTGGATGTCGGCGAAACCC+TGG - chr2_1:19369894-19369913 Msa0199950:CDS 65.0%
GGATGTCGGCGAAACCCTGG+AGG - chr2_1:19369897-19369916 Msa0199950:CDS 65.0%
CTGCTGCCTCGGCTGTTGTC+CGG + chr2_1:19374410-19374429 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 19368787 19375740 19368787 ID=Msa0199950;Name=Msa0199950
chr2_1 mRNA 19368787 19375740 19368787 ID=Msa0199950-mRNA-1;Parent=Msa0199950;Name=Msa0199950-mRNA-1;_AED=0.07;_eAED=0.07;_QI=161|1|1|1|0.92|0.85|14|355|915
chr2_1 exon 19368787 19369207 19368787 ID=Msa0199950-mRNA-1:exon:8100;Parent=Msa0199950-mRNA-1
chr2_1 exon 19369463 19369771 19369463 ID=Msa0199950-mRNA-1:exon:8099;Parent=Msa0199950-mRNA-1
chr2_1 exon 19369859 19370405 19369859 ID=Msa0199950-mRNA-1:exon:8098;Parent=Msa0199950-mRNA-1
chr2_1 exon 19371007 19371704 19371007 ID=Msa0199950-mRNA-1:exon:8097;Parent=Msa0199950-mRNA-1
chr2_1 exon 19371821 19372207 19371821 ID=Msa0199950-mRNA-1:exon:8096;Parent=Msa0199950-mRNA-1
chr2_1 exon 19372339 19372397 19372339 ID=Msa0199950-mRNA-1:exon:8095;Parent=Msa0199950-mRNA-1
chr2_1 exon 19372481 19372597 19372481 ID=Msa0199950-mRNA-1:exon:8094;Parent=Msa0199950-mRNA-1
chr2_1 exon 19372902 19373019 19372902 ID=Msa0199950-mRNA-1:exon:8093;Parent=Msa0199950-mRNA-1
chr2_1 exon 19373439 19373484 19373439 ID=Msa0199950-mRNA-1:exon:8092;Parent=Msa0199950-mRNA-1
chr2_1 exon 19373672 19373760 19373672 ID=Msa0199950-mRNA-1:exon:8091;Parent=Msa0199950-mRNA-1
chr2_1 exon 19373966 19374081 19373966 ID=Msa0199950-mRNA-1:exon:8090;Parent=Msa0199950-mRNA-1
chr2_1 exon 19374509 19374634 19374509 ID=Msa0199950-mRNA-1:exon:8089;Parent=Msa0199950-mRNA-1
chr2_1 exon 19375350 19375479 19375350 ID=Msa0199950-mRNA-1:exon:8088;Parent=Msa0199950-mRNA-1
chr2_1 exon 19375640 19375740 19375640 ID=Msa0199950-mRNA-1:exon:8087;Parent=Msa0199950-mRNA-1
chr2_1 five_prime_UTR 19375640 19375740 19375640 ID=Msa0199950-mRNA-1:five_prime_utr;Parent=Msa0199950-mRNA-1
chr2_1 five_prime_UTR 19375420 19375479 19375420 ID=Msa0199950-mRNA-1:five_prime_utr;Parent=Msa0199950-mRNA-1
chr2_1 CDS 19375350 19375419 19375350 ID=Msa0199950-mRNA-1:cds;Parent=Msa0199950-mRNA-1
chr2_1 CDS 19374509 19374634 19374509 ID=Msa0199950-mRNA-1:cds;Parent=Msa0199950-mRNA-1
chr2_1 CDS 19373966 19374081 19373966 ID=Msa0199950-mRNA-1:cds;Parent=Msa0199950-mRNA-1
chr2_1 CDS 19373672 19373760 19373672 ID=Msa0199950-mRNA-1:cds;Parent=Msa0199950-mRNA-1
chr2_1 CDS 19373439 19373484 19373439 ID=Msa0199950-mRNA-1:cds;Parent=Msa0199950-mRNA-1
chr2_1 CDS 19372902 19373019 19372902 ID=Msa0199950-mRNA-1:cds;Parent=Msa0199950-mRNA-1
chr2_1 CDS 19372481 19372597 19372481 ID=Msa0199950-mRNA-1:cds;Parent=Msa0199950-mRNA-1
chr2_1 CDS 19372339 19372397 19372339 ID=Msa0199950-mRNA-1:cds;Parent=Msa0199950-mRNA-1
chr2_1 CDS 19371821 19372207 19371821 ID=Msa0199950-mRNA-1:cds;Parent=Msa0199950-mRNA-1
chr2_1 CDS 19371007 19371704 19371007 ID=Msa0199950-mRNA-1:cds;Parent=Msa0199950-mRNA-1
chr2_1 CDS 19369859 19370405 19369859 ID=Msa0199950-mRNA-1:cds;Parent=Msa0199950-mRNA-1
chr2_1 CDS 19369463 19369771 19369463 ID=Msa0199950-mRNA-1:cds;Parent=Msa0199950-mRNA-1
chr2_1 CDS 19369142 19369207 19369142 ID=Msa0199950-mRNA-1:cds;Parent=Msa0199950-mRNA-1
chr2_1 three_prime_UTR 19368787 19369141 19368787 ID=Msa0199950-mRNA-1:three_prime_utr;Parent=Msa0199950-mRNA-1
Gene Sequence

>Msa0199950

ATGATGGCACAAAACAACTTCACAGGACAGCTTGTTGGTTCAGAGATACATGGATTCCACACCTTGAGAGACCTGGATGTCGGCGAAACCCTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCGAATGAGATTCACGCCATACTCAGCAATTACAAATATTTTACTATCCATGTCAAGCCATTGAATTTGCCCAAAAGTGGCACTGTTGTACTATTTGACCGCAAGATGCTTAGGAACTTCCGAAAAGATGGGCACAACTGGAAAAAGAAAAATGACGGGAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAACGAAGAGAGAATCCACGTATATTATGCACACGGCCAAGATAACCCAGGCTTTGTTCGAAGATGTTATTGGTTGCTTGATAAGAGTCTGGAGCACATAGTCCTGGTTCATTATCGTGAAACACAAGAGTCTCAAAGTTCTCCCGTTACACCATTAAATTCAAATGCGAGTCCTATTTCTGATACAACTGCACCATGGATTCTATCAGAAGACTTGGATTCTGGAACCAGCAGTGCTTATACGAATGGTCTTAATGGAAATTTAACAGTCAGAAGTCATGAACAGAAGCTTCATGAGCTTAATACACTTGATTGGGATGAACTAGTGGCTTCTAATGTTAATACCCCTACTATACAAAATGGAGGAAACGAACCGCGTTACTATCAACTAAATCAAAGCTTACCGAATGGCAGCTTTGACAATGTTGCTGGTAATCTTTCCTCAGAAATTCCTACGTATGGTATTCTAACTCCGCCAGAGTCTGGGAGCAGTAATGTTTCTTACTGTTTCCCAGAAAGTGTTAACGATCAAAAGAATCATTCTATGAATCTTGGTGGTGTTGATTCCGTTGACACTTTAGTCAATGAAGGTTTGCAAAGTCAGATTACCTTTGGAACGTGGATGAACAATGCCGTATCTTACACACCATGTTCTGTAGAGGCGTCAACTCTTGAATCGTCAATTCCTTCATCTGTTACTGATCCATTTTCATCACTGGTGATGGATAATCAACAATCTTCTCTTCCGGAACAAGTATTTCATATTACTGAGGTGGCCCCTTCGTGGGTTTCTTCCACTGAGAAAACAAAGGTCCTAGTAACTGGATATTTTCTCTTTGATTATCAACACCTTGCAAAGTCCAATATAATGTGTGTCTGTGGCGAAACAAGTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTAATGCCGCATTCTCCTGGATTTGTGAATCTCTATTTGAGCTTCGATTGCCATAAGCCTATTAGCCAAGTTGTTAATTTCGAATATCGCACTCCTATTTTGCACGATCCTGCTGCTTCAGTGGAAGAGACATACAACTGGGTTGAATTTCGTCTTCAAATGAGGCTTTCTCATTTGCTTTTTACAACACCGAAGACCCTTGATGTTTTCTCTAGTGAAGCATCACCTACTGCACTGAAAGAGACTAAAAAATTCGCCTCCAAAACATTATTTCTTTCCAAAAGTTTTATACACTTCATGAAGTCGTCTGACGCAAACGCACCTCCCTTTCTGCAAGCGAAAAATACCTTGTTCGAAATTGCGTTGAAAAACAAACTCAGGGAATGGCTTTTGGAACGTATTGTTTTAGGATGTAAGACTACTGAGTATGATGCACAAGGCCAAAGTGTAATTCATTTGTGTGCAATGTTGGGATATACTTGGGCTATTACTTTGTTTTCGTGGTCAGGCTTGTCGCTGGATTTCCGCGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATAATGGAATGGAGAATATGGTTGCTACGTTGTTGTCTTGTGGAGCAAAGCCCAATTTGGTGACAGATCCAACTACCGAATACCCTGGTGGCTGTACTGCTGCTGATCTTGCTTATATGAAAGGATATGACGGTTTAGCTGCTTATCTTTCAGAAAAGTGTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGTTCACTCCAAACCACTACATCTGATCCAGTAAATGCTGAGAACCTTACAGAGGACCAAGTGTACTTAAAGGATACATTGGCAGCTTACCGGACAACAGCCGAGGCAGCAGCACGCATACAAGCAGCGTTTAGGGAGCACTCACTAAAATTGCGATATCAGTCGGTTCAATTTATCAGTCCAGAGGAGGAAGCACGCCAGATAGTAGCAGCAATGAAAATTCAACATGCCTTTCGCAACTTTGAGACAAGAAAAGCAATGGCAGCCGCTGCTCGGATCCAGTACAGATTCCGTTCATGGAAGTTGCGTAGAGAGTTTCTCCACATGCGACGTCAGGCTATTAGAATTCAAGCTGCATTTAGAGGCTTTCAAGTGCGTAGGCAATATCGTAAAATTCTATGGTCTGTTGGAATTCTTGAGAAAGTAATCCTGCGTTGGCTTTTAAAGAGAAAAGGTTTCCGTGGGCTTGAGGTGAATCCGGACGAAGACATGAAAGATGAGAAGCAGGAAAGCGATGTAGAAGAGGACTTCTTTAAGACTGGTAGGAAACAAGCGGAAGAACGCGTTGAGAGATCTGTGGTACGCGTACAAGCCATGTTCCGTTCTAAGAAAGCACAACAAGAGTATAGCAGGATGAAGATGGCACATAGTCAAGCAAAGTTGGAACTTGAATTAGAAGAACTCATCAATTCTGATGTGGACATGTTCACAACAAAGACATCATAA
Protein sequence

>Msa0199950

MMAQNNFTGQLVGSEIHGFHTLRDLDVGETLEEAKSRWLRPNEIHAILSNYKYFTIHVKPLNLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGFVRRCYWLLDKSLEHIVLVHYRETQESQSSPVTPLNSNASPISDTTAPWILSEDLDSGTSSAYTNGLNGNLTVRSHEQKLHELNTLDWDELVASNVNTPTIQNGGNEPRYYQLNQSLPNGSFDNVAGNLSSEIPTYGILTPPESGSSNVSYCFPESVNDQKNHSMNLGGVDSVDTLVNEGLQSQITFGTWMNNAVSYTPCSVEASTLESSIPSSVTDPFSSLVMDNQQSSLPEQVFHITEVAPSWVSSTEKTKVLVTGYFLFDYQHLAKSNIMCVCGETSVPVEIVQVGVYRCWVMPHSPGFVNLYLSFDCHKPISQVVNFEYRTPILHDPAASVEETYNWVEFRLQMRLSHLLFTTPKTLDVFSSEASPTALKETKKFASKTLFLSKSFIHFMKSSDANAPPFLQAKNTLFEIALKNKLREWLLERIVLGCKTTEYDAQGQSVIHLCAMLGYTWAITLFSWSGLSLDFRDKFGWTALHWAAYNGMENMVATLLSCGAKPNLVTDPTTEYPGGCTAADLAYMKGYDGLAAYLSEKCLVEQFNDMSLAGNISGSLQTTTSDPVNAENLTEDQVYLKDTLAAYRTTAEAAARIQAAFREHSLKLRYQSVQFISPEEEARQIVAAMKIQHAFRNFETRKAMAAAARIQYRFRSWKLRREFLHMRRQAIRIQAAFRGFQVRRQYRKILWSVGILEKVILRWLLKRKGFRGLEVNPDEDMKDEKQESDVEEDFFKTGRKQAEERVERSVVRVQAMFRSKKAQQEYSRMKMAHSQAKLELELEELINSDVDMFTTKTS*