AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0723320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0723320 MtrunA17_Chr5g0414211 72.512 422 93 1 27 448 1 399 0.0 584
Msa0723320 MtrunA17_Chr3g0087301 65.760 441 151 0 2 442 641 1081 0.0 558
Msa0723320 MtrunA17_Chr5g0414201 88.502 287 33 0 1 287 653 939 1.04e-172 509
Msa0723320 MtrunA17_Chr5g0415471 59.375 448 177 3 2 448 662 1105 2.87e-166 497
Msa0723320 MtrunA17_Chr5g0414311 57.014 442 186 2 2 442 664 1102 6.37e-160 481
Msa0723320 MtrunA17_Chr5g0414181 70.093 321 96 0 2 322 652 972 1.66e-145 439
Msa0723320 MtrunA17_Chr5g0414301 47.936 436 145 5 2 436 211 565 3.85e-108 331
Msa0723320 MtrunA17_Chr5g0414161 63.780 254 92 0 2 255 144 397 3.58e-105 318
Msa0723320 MtrunA17_Chr5g0417251 65.823 237 78 2 2 236 423 658 5.05e-93 294
Msa0723320 MtrunA17_Chr3g0123111 38.210 458 246 10 2 435 641 1085 8.67e-79 265
Msa0723320 MtrunA17_Chr3g0085931 38.771 472 243 14 2 442 644 1100 1.26e-77 261
Msa0723320 MtrunA17_Chr8g0351811 38.889 468 247 11 2 442 166 621 4.07e-76 250
Msa0723320 MtrunA17_Chr6g0470001 37.908 459 242 12 2 435 253 693 4.72e-74 246
Msa0723320 MtrunA17_Chr6g0470011 37.155 471 253 12 2 447 646 1098 7.55e-73 248
Msa0723320 MtrunA17_Chr6g0468201 37.634 465 236 12 2 442 247 681 1.39e-72 242
Msa0723320 MtrunA17_Chr6g0468101 37.446 462 245 11 2 435 603 1048 4.02e-72 246
Msa0723320 MtrunA17_Chr6g0468021 37.174 460 233 10 2 435 640 1069 7.53e-70 239
Msa0723320 MtrunA17_Chr6g0468451 36.034 469 250 10 2 435 642 1095 8.58e-69 237
Msa0723320 MtrunA17_Chr6g0468381 36.569 443 243 10 21 438 78 507 1.55e-67 226
Msa0723320 MtrunA17_Chr6g0468121 37.310 461 232 13 2 435 643 1073 3.95e-67 232
Msa0723320 MtrunA17_Chr6g0468251 34.624 439 272 9 9 438 4 436 4.78e-67 221
Msa0723320 MtrunA17_Chr6g0470081 35.948 459 251 12 2 435 646 1086 1.34e-65 228
Msa0723320 MtrunA17_Chr4g0027251 37.916 451 217 13 2 446 652 1045 9.60e-65 225
Msa0723320 MtrunA17_Chr6g0468151 34.839 465 257 7 2 441 648 1091 8.42e-64 223
Msa0723320 MtrunA17_Chr6g0468271 35.118 467 266 10 2 442 639 1094 1.20e-63 222
Msa0723320 MtrunA17_Chr1g0155321 37.130 439 192 14 2 435 644 1003 7.62e-63 219
Msa0723320 MtrunA17_Chr7g0244231 37.020 443 198 13 2 440 641 1006 1.00e-61 216
Msa0723320 MtrunA17_Chr5g0430141 35.666 443 200 11 2 438 651 1014 2.58e-60 212
Msa0723320 MtrunA17_Chr5g0430291 36.902 439 195 11 2 435 649 1010 2.70e-59 209
Msa0723320 MtrunA17_Chr6g0468341 36.099 446 237 12 21 435 470 898 5.01e-58 205
Msa0723320 MtrunA17_Chr5g0430721 35.240 437 203 11 2 435 689 1048 6.78e-58 205
Msa0723320 MtrunA17_Chr5g0415511 73.427 143 38 0 305 447 562 704 7.05e-58 202
Msa0723320 MtrunA17_Chr5g0430621 35.214 443 206 12 2 441 648 1012 5.18e-57 202
Msa0723320 MtrunA17_Chr5g0415481 46.800 250 102 5 2 243 228 454 2.61e-56 193
Msa0723320 MtrunA17_Chr5g0415481 36.900 271 143 9 112 369 204 459 1.31e-27 114
Msa0723320 MtrunA17_Chr4g0071011 33.860 443 211 12 2 441 140 503 3.16e-56 194
Msa0723320 MtrunA17_Chr5g0430341 34.921 441 183 12 2 440 193 531 5.42e-55 191
Msa0723320 MtrunA17_Chr1g0155991 35.160 438 202 12 2 435 646 1005 1.99e-54 195
Msa0723320 MtrunA17_Chr5g0430511 34.234 444 205 12 2 441 650 1010 2.23e-54 195
Msa0723320 MtrunA17_Chr5g0413811 49.597 248 93 5 2 248 429 645 1.27e-53 190
Msa0723320 MtrunA17_Chr5g0413811 64.545 110 39 0 331 440 559 668 1.09e-29 122
Msa0723320 MtrunA17_Chr5g0430901 40.361 332 188 8 9 337 537 861 1.49e-52 189
Msa0723320 MtrunA17_Chr5g0430641 35.240 437 201 11 2 435 649 1006 2.40e-52 189
Msa0723320 MtrunA17_Chr5g0430581 33.485 439 188 10 2 438 642 978 3.02e-52 189
Msa0723320 MtrunA17_Chr6g0470021 37.356 348 196 8 2 345 536 865 4.17e-52 188
Msa0723320 MtrunA17_Chr5g0429961 34.396 439 184 11 2 438 646 982 7.52e-52 187
Msa0723320 MtrunA17_Chr5g0430441 34.396 439 184 10 2 438 649 985 7.69e-52 187
Msa0723320 MtrunA17_Chr5g0431051 33.636 440 188 10 2 439 651 988 1.82e-51 187
Msa0723320 MtrunA17_Chr6g0468261 36.765 340 202 7 104 435 4 338 7.50e-46 162
Msa0723320 MtrunA17_Chr6g0468131 33.880 366 197 7 95 435 1 346 2.85e-45 161
Msa0723320 MtrunA17_Chr6g0467921 36.624 314 162 8 146 435 1 301 5.79e-41 149
Msa0723320 MtrunA17_Chr5g0410481 30.454 463 280 15 2 439 627 1072 4.73e-38 147
Msa0723320 MtrunA17_Chr5g0429951 31.746 441 197 11 2 438 650 990 4.97e-38 147
Msa0723320 MtrunA17_Chr5g0410161 29.487 468 277 12 2 436 784 1231 4.24e-37 144
Msa0723320 MtrunA17_Chr2g0316291 30.213 470 248 19 2 440 667 1087 6.67e-35 138
Msa0723320 MtrunA17_Chr3g0083621 28.142 565 273 17 2 442 678 1233 3.79e-34 136
Msa0723320 MtrunA17_Chr6g0467961 39.189 222 129 5 2 221 640 857 3.84e-34 135
Msa0723320 MtrunA17_Chr3g0082131 32.143 448 254 20 2 423 677 1100 6.32e-34 135
Msa0723320 MtrunA17_Chr1g0164581 32.143 448 254 20 2 423 653 1076 7.50e-34 135
Msa0723320 MtrunA17_Chr1g0164581 27.966 354 185 15 101 442 924 1219 1.47e-12 70.1
Msa0723320 MtrunA17_Chr4g0008461 27.113 568 273 18 2 442 651 1204 2.23e-33 134
Msa0723320 MtrunA17_Chr5g0410351 29.536 474 277 16 2 441 637 1087 6.10e-33 132
Msa0723320 MtrunA17_Chr3g0086091 27.689 502 291 18 2 444 466 954 8.49e-32 129
Msa0723320 MtrunA17_Chr3g0083751 27.758 562 280 18 2 442 672 1228 1.23e-31 128
Msa0723320 MtrunA17_Chr6g0468361 40.884 181 103 4 2 179 251 430 8.31e-31 123
Msa0723320 MtrunA17_Chr3g0086221 30.000 510 269 20 2 444 654 1142 9.81e-31 125
Msa0723320 MtrunA17_Chr5g0430951 41.441 222 122 6 2 219 647 864 6.78e-30 123
Msa0723320 MtrunA17_Chr3g0083591 26.978 556 285 17 2 442 632 1181 1.46e-29 122
Msa0723320 MtrunA17_Chr6g0468331 36.364 198 104 2 260 435 474 671 2.21e-29 121
Msa0723320 MtrunA17_Chr3g0083681 27.046 562 282 20 2 442 644 1198 3.33e-29 121
Msa0723320 MtrunA17_Chr3g0080871 30.872 447 245 16 2 404 655 1081 3.53e-29 121
Msa0723320 MtrunA17_Chr3g0085651 30.638 470 251 21 2 418 665 1112 3.84e-29 121
Msa0723320 MtrunA17_Chr3g0089591 29.371 429 276 14 2 411 720 1140 5.03e-29 120
Msa0723320 MtrunA17_Chr3g0089591 27.954 347 217 12 124 442 948 1289 1.50e-13 73.2
Msa0723320 MtrunA17_Chr3g0089471 29.138 429 277 14 2 411 717 1137 6.44e-29 120
Msa0723320 MtrunA17_Chr3g0089471 27.666 347 216 13 124 442 945 1284 2.03e-11 66.6
Msa0723320 MtrunA17_Chr2g0282991 29.801 453 267 16 2 418 665 1102 6.73e-29 120
Msa0723320 MtrunA17_Chr3g0090691 30.952 462 288 18 2 444 670 1119 1.34e-28 119
Msa0723320 MtrunA17_Chr3g0083641 26.678 566 281 20 2 442 643 1199 2.47e-28 118
Msa0723320 MtrunA17_Chr3g0084081 28.112 498 281 19 2 440 670 1149 1.20e-27 116
Msa0723320 MtrunA17_Chr3g0091061 28.634 454 260 15 2 417 670 1097 1.72e-27 116
Msa0723320 MtrunA17_Chr8g0356251 26.445 571 284 20 2 442 693 1257 3.43e-27 115
Msa0723320 MtrunA17_Chr3g0089991 31.579 361 221 15 2 342 673 1027 7.11e-27 114
Msa0723320 MtrunA17_Chr3g0090371 28.995 438 257 16 2 393 668 1097 1.21e-26 113
Msa0723320 MtrunA17_Chr3g0090431 27.074 458 265 16 2 418 541 970 1.74e-26 113
Msa0723320 MtrunA17_Chr3g0089441 30.252 357 202 15 2 317 175 525 2.41e-26 112
Msa0723320 MtrunA17_Chr3g0089211 29.016 386 231 14 2 349 716 1096 5.42e-26 111
Msa0723320 MtrunA17_Chr2g0309721 28.133 391 233 14 2 351 666 1049 5.60e-26 111
Msa0723320 MtrunA17_Chr3g0087581 27.439 492 298 15 2 441 656 1140 5.88e-26 111
Msa0723320 MtrunA17_Chr3g0092261 26.667 465 284 17 2 416 713 1170 9.72e-26 110
Msa0723320 MtrunA17_Chr3g0085451 32.118 439 251 20 2 417 641 1055 9.97e-26 110
Msa0723320 MtrunA17_Chr3g0084971 28.761 452 277 17 2 418 660 1101 1.08e-25 110
Msa0723320 MtrunA17_Chr3g0085161 26.908 524 261 19 2 440 521 1007 1.19e-25 110
Msa0723320 MtrunA17_Chr3g0089541 27.494 451 271 18 2 403 672 1115 2.84e-25 109
Msa0723320 MtrunA17_Chr3g0113791 27.506 429 282 15 2 417 653 1065 3.52e-25 108
Msa0723320 MtrunA17_Chr3g0089251 29.494 356 207 14 2 318 698 1048 5.39e-25 108
Msa0723320 MtrunA17_Chr2g0299151 27.051 573 276 20 2 442 660 1222 6.04e-25 108
Msa0723320 MtrunA17_Chr3g0091971 29.213 445 265 19 2 418 597 1019 7.50e-25 108
Msa0723320 MtrunA17_Chr3g0089421 29.594 419 233 20 2 396 671 1051 8.58e-25 108
Msa0723320 MtrunA17_Chr3g0085091 25.869 518 262 19 8 440 669 1149 9.99e-25 107
Msa0723320 MtrunA17_Chr3g0092241 28.409 352 208 12 2 314 669 1015 1.02e-24 107
Msa0723320 MtrunA17_Chr3g0089871 27.500 480 267 17 2 417 672 1134 1.24e-24 107
Msa0723320 MtrunA17_Chr3g0085801 29.284 461 262 21 2 443 635 1050 1.31e-24 107
Msa0723320 MtrunA17_Chr8g0352861 27.442 430 285 13 2 418 681 1096 1.38e-24 107
Msa0723320 MtrunA17_Chr8g0352861 28.720 289 168 12 191 446 961 1244 1.92e-12 69.7
Msa0723320 MtrunA17_Chr3g0091081 29.087 416 200 16 2 398 668 1007 1.39e-24 107
Msa0723320 MtrunA17_Chr5g0410301 30.383 339 203 14 2 326 639 958 2.28e-24 106
Msa0723320 MtrunA17_Chr3g0085521 26.336 524 264 22 2 440 652 1138 3.31e-24 106
Msa0723320 MtrunA17_Chr3g0085701 27.856 499 288 20 2 440 464 950 3.58e-24 105
Msa0723320 MtrunA17_Chr3g0085481 29.087 416 222 17 2 411 4 352 5.97e-24 102
Msa0723320 MtrunA17_Chr3g0090141 29.955 444 271 19 2 418 669 1099 6.13e-24 105
Msa0723320 MtrunA17_Chr3g0086621 25.194 516 275 18 2 440 655 1136 6.90e-24 105
Msa0723320 MtrunA17_Chr3g0089651 31.250 416 225 19 2 393 673 1051 1.05e-23 104
Msa0723320 MtrunA17_Chr3g0089761 25.493 608 274 24 2 442 669 1264 1.64e-23 103
Msa0723320 MtrunA17_Chr3g0084061 25.486 514 277 17 2 440 668 1150 1.82e-23 103
Msa0723320 MtrunA17_Chr3g0090651 34.914 232 135 10 2 221 670 897 2.08e-23 103
Msa0723320 MtrunA17_Chr3g0089811 29.745 353 203 13 2 314 669 1016 2.14e-23 103
Msa0723320 MtrunA17_Chr3g0087841 27.689 502 291 20 2 445 669 1156 2.14e-23 103
Msa0723320 MtrunA17_Chr3g0089781 33.906 233 138 10 2 221 669 898 2.52e-23 103
Msa0723320 MtrunA17_Chr3g0084811 30.194 361 212 15 2 346 818 1154 4.94e-23 102
Msa0723320 MtrunA17_Chr3g0085331 30.216 417 264 15 2 411 679 1075 7.78e-23 102
Msa0723320 MtrunA17_Chr6g0456131 28.139 462 239 16 2 444 662 1049 9.43e-23 101
Msa0723320 MtrunA17_Chr1g0147141 27.273 385 229 14 2 346 671 1044 1.08e-22 101
Msa0723320 MtrunA17_Chr3g0086071 28.641 412 223 16 2 394 275 634 1.39e-22 100
Msa0723320 MtrunA17_Chr3g0086161 27.435 503 287 19 2 443 655 1140 1.44e-22 101
Msa0723320 MtrunA17_Chr3g0085711 25.813 523 268 19 2 440 227 713 2.17e-22 100
Msa0723320 MtrunA17_Chr3g0087701 27.115 520 264 20 2 443 659 1141 3.20e-22 100
Msa0723320 MtrunA17_Chr3g0091121 28.646 384 228 15 2 346 280 656 4.20e-22 99.4
Msa0723320 MtrunA17_Chr3g0085131 26.154 520 262 22 2 440 657 1135 5.06e-22 99.4
Msa0723320 MtrunA17_Chr3g0078351 27.059 425 248 18 57 447 6 402 9.60e-22 97.1
Msa0723320 MtrunA17_Chr4g0025391 27.250 400 241 16 2 358 667 1059 9.73e-22 98.6
Msa0723320 MtrunA17_Chr3g0086181 37.179 234 122 10 2 224 655 874 1.09e-21 98.2
Msa0723320 MtrunA17_Chr8g0348931 28.977 352 208 15 2 316 675 1021 1.11e-21 98.6
Msa0723320 MtrunA17_Chr6g0467911 45.312 128 66 4 2 126 646 772 2.10e-21 97.4
Msa0723320 MtrunA17_Chr3g0085561 30.408 319 203 11 2 312 655 962 3.60e-21 96.7
Msa0723320 MtrunA17_Chr3g0083721 30.368 326 196 13 2 316 610 915 3.68e-21 96.7
Msa0723320 MtrunA17_Chr3g0085171 28.200 500 286 21 2 440 647 1134 3.75e-21 97.1
Msa0723320 MtrunA17_Chr3g0089601 31.304 230 139 8 2 215 667 893 4.34e-21 96.7
Msa0723320 MtrunA17_Chr8g0338861 28.493 365 189 10 93 444 370 675 4.74e-21 96.3
Msa0723320 MtrunA17_Chr3g0085751 26.820 522 264 22 2 440 655 1141 4.88e-21 96.7
Msa0723320 MtrunA17_Chr3g0082351 28.082 438 266 17 2 413 669 1083 5.76e-21 96.3
Msa0723320 MtrunA17_Chr3g0089961 31.780 236 139 10 2 221 672 901 6.71e-21 95.9
Msa0723320 MtrunA17_Chr5g0410401 29.836 305 172 12 4 277 516 809 6.77e-21 95.9
Msa0723320 MtrunA17_Chr5g0446611 38.854 157 92 3 2 155 669 824 8.15e-21 95.5
Msa0723320 MtrunA17_Chr3g0085501 28.947 456 253 23 2 418 679 1102 1.73e-20 94.7
Msa0723320 MtrunA17_Chr5g0410261 29.665 418 246 17 2 402 670 1056 2.26e-20 94.4
Msa0723320 MtrunA17_Chr3g0082311 28.132 423 257 17 2 397 671 1073 2.93e-20 94.0
Msa0723320 MtrunA17_Chr1g0164631 27.914 326 206 11 2 316 677 984 3.81e-20 93.6
Msa0723320 MtrunA17_Chr1g0189551 29.603 277 140 7 217 442 598 870 3.84e-20 93.6
Msa0723320 MtrunA17_Chr3g0085471 29.314 423 221 18 2 418 669 1019 4.47e-20 93.6
Msa0723320 MtrunA17_Chr3g0091011 32.883 222 137 6 2 214 639 857 5.79e-20 93.2
Msa0723320 MtrunA17_Chr5g0433771 35.685 241 120 9 227 438 617 851 6.93e-20 92.8
Msa0723320 MtrunA17_Chr3g0085111 28.423 482 237 21 1 393 657 1119 7.71e-20 92.8
Msa0723320 MtrunA17_Chr3g0084031 26.706 513 271 20 2 440 672 1153 8.55e-20 92.8
Msa0723320 MtrunA17_Chr1g0164391 28.205 429 260 17 2 397 672 1085 8.63e-20 92.8
Msa0723320 MtrunA17_Chr8g0355411 27.778 270 140 4 225 444 581 845 9.43e-20 92.4
Msa0723320 MtrunA17_Chr3g0085431 36.327 245 132 12 2 233 268 501 1.20e-19 91.3
Msa0723320 MtrunA17_Chr3g0089501 34.054 185 112 6 2 179 667 848 1.93e-19 91.3
Msa0723320 MtrunA17_Chr8g0352211 26.630 368 197 11 89 443 1657 1964 2.16e-19 91.7
Msa0723320 MtrunA17_Chr2g0299091 29.762 252 137 7 2 220 650 894 2.22e-19 91.3
Msa0723320 MtrunA17_Chr5g0417291 36.923 195 103 9 2 190 8 188 2.27e-19 85.9
Msa0723320 MtrunA17_Chr3g0085551 35.000 160 99 4 2 157 547 705 5.09e-19 90.1
Msa0723320 MtrunA17_Chr1g0169901 25.450 389 238 13 2 346 661 1041 9.88e-19 89.4
Msa0723320 MtrunA17_Chr1g0164611 28.176 433 231 15 2 418 681 1049 1.36e-18 89.0
Msa0723320 MtrunA17_Chr7g0221481 38.122 181 104 6 2 177 666 843 1.85e-18 88.2
Msa0723320 MtrunA17_Chr3g0086151 31.646 237 151 9 2 234 655 884 2.07e-18 88.2
Msa0723320 MtrunA17_Chr1g0168901 31.908 304 162 14 2 268 638 933 2.66e-18 87.8
Msa0723320 MtrunA17_Chr3g0084041 34.066 182 111 5 2 179 8 184 2.80e-18 83.2
Msa0723320 MtrunA17_Chr2g0299121 29.870 231 134 6 2 214 676 896 3.82e-18 87.4
Msa0723320 MtrunA17_Chr3g0113781 27.451 306 203 11 2 298 448 743 3.86e-18 87.4
Msa0723320 MtrunA17_Chr4g0020501 27.723 303 206 11 2 298 542 837 1.01e-17 86.3
Msa0723320 MtrunA17_Chr3g0090401 25.926 459 250 16 2 418 880 1290 1.05e-17 86.3
Msa0723320 MtrunA17_Chr7g0248221 29.455 275 142 6 217 442 577 848 1.18e-17 85.9
Msa0723320 MtrunA17_Chr3g0087541 26.857 525 256 23 2 440 674 1156 1.30e-17 85.9
Msa0723320 MtrunA17_Chr7g0218941 26.542 373 198 12 87 441 653 967 1.33e-17 85.9
Msa0723320 MtrunA17_Chr8g0352831 33.333 189 117 5 21 205 707 890 2.99e-17 84.7
Msa0723320 MtrunA17_Chr5g0415551 37.107 159 89 6 2 155 527 679 6.37e-17 83.6
Msa0723320 MtrunA17_Chr6g0484551 32.870 216 127 9 2 205 643 852 1.13e-16 82.8
Msa0723320 MtrunA17_Chr3g0086741 31.959 194 117 6 2 181 684 876 1.52e-16 82.4
Msa0723320 MtrunA17_Chr7g0257201 30.159 252 146 7 214 440 615 861 1.84e-16 82.0
Msa0723320 MtrunA17_Chr2g0299101 33.750 160 102 3 2 160 676 832 1.88e-16 82.0
Msa0723320 MtrunA17_Chr6g0456121 31.208 298 182 13 16 303 657 941 2.00e-16 82.0
Msa0723320 MtrunA17_Chr7g0248531 31.148 244 125 9 2 209 656 892 3.75e-16 81.3
Msa0723320 MtrunA17_Chr3g0082101 29.907 321 196 12 2 309 629 933 9.70e-16 80.1
Msa0723320 MtrunA17_Chr3g0082391 38.621 145 80 6 2 141 672 812 1.05e-15 79.7
Msa0723320 MtrunA17_Chr7g0257541 30.252 238 135 6 230 440 629 862 3.97e-15 78.2
Msa0723320 MtrunA17_Chr7g0248441 34.184 196 98 6 275 442 4 196 4.69e-15 73.6
Msa0723320 MtrunA17_Chr3g0087731 28.158 380 200 13 2 316 458 829 7.31e-15 77.0
Msa0723320 MtrunA17_Chr3g0091951 29.119 261 148 8 213 442 76 330 1.00e-14 75.1
Msa0723320 MtrunA17_Chr3g0082401 26.952 397 224 12 105 440 121 512 1.74e-14 75.5
Msa0723320 MtrunA17_Chr3g0084051 24.172 513 278 19 2 440 670 1145 1.80e-14 76.3
Msa0723320 MtrunA17_Chr3g0082321 32.402 179 112 6 2 175 617 791 2.00e-14 75.9
Msa0723320 MtrunA17_Chr3g0089941 30.286 175 109 6 57 221 15 186 2.85e-14 71.6
Msa0723320 MtrunA17_Chr8g0338261 28.571 364 200 14 79 439 626 932 4.38e-14 74.7
Msa0723320 MtrunA17_Chr7g0257221 29.646 226 124 7 243 440 643 861 5.75e-14 74.3
Msa0723320 MtrunA17_Chr3g0082891 30.180 222 136 5 236 444 629 844 4.78e-13 71.6
Msa0723320 MtrunA17_Chr3g0082811 33.987 153 90 5 2 148 652 799 2.34e-12 69.3
Msa0723320 MtrunA17_Chr8g0346831 26.166 386 197 15 55 414 615 938 2.51e-12 69.3
Msa0723320 MtrunA17_Chr3g0082791 29.392 296 160 12 2 267 671 947 3.84e-12 68.6
Msa0723320 MtrunA17_Chr8g0363851 28.239 301 199 8 115 411 465 752 6.61e-12 68.2
Msa0723320 MtrunA17_Chr3g0089921 25.658 304 187 10 82 349 1 301 1.14e-11 66.6
Msa0723320 MtrunA17_Chr4g0010201 24.122 427 253 15 2 410 665 1038 1.30e-11 67.0
Msa0723320 MtrunA17_Chr2g0309161 34.000 100 66 0 343 442 28 127 1.84e-11 61.6
Msa0723320 MtrunA17_Chr4g0010251 24.816 407 238 15 2 393 661 1014 4.93e-11 65.1
Msa0723320 MtrunA17_Chr7g0257191 29.240 171 94 6 273 441 718 863 6.75e-11 64.7
Msa0723320 MtrunA17_Chr8g0392511 35.484 124 74 5 2 122 230 350 7.57e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0723320 AT3G14470.1 31.790 324 188 12 2 298 671 988 2.49e-27 115
Msa0723320 AT3G14470.2 31.790 324 188 12 2 298 671 988 2.49e-27 115
Msa0723320 AT1G69550.1 29.450 309 179 7 115 417 718 993 1.35e-16 83.2
Msa0723320 AT1G69550.1 31.013 316 188 11 115 417 910 1208 1.74e-13 73.6
Msa0723320 AT1G69550.1 29.755 326 207 12 115 432 934 1245 2.83e-11 66.6
Msa0723320 AT3G14460.1 28.216 241 129 7 2 203 665 900 4.90e-15 78.6
Msa0723320 AT3G25510.2 28.000 350 198 12 112 441 506 821 8.17e-15 77.4
Msa0723320 AT3G25510.1 28.000 350 198 12 112 441 506 821 8.17e-15 77.4
Msa0723320 AT5G44510.2 27.070 314 187 9 111 417 678 956 3.46e-11 66.2
Msa0723320 AT5G44510.4 27.070 314 187 9 111 417 678 956 3.79e-11 65.9
Msa0723320 AT5G44510.1 27.070 314 187 9 111 417 678 956 4.07e-11 65.9
Msa0723320 AT5G44510.3 27.070 314 187 9 111 417 678 956 4.08e-11 65.9

Find 85 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGCAAGGCCAACAATTT+AGG 0.167445 5_1:+20887978 None:intergenic
TAAATACTGTTAAACTCTTT+AGG 0.213780 5_1:+20888174 None:intergenic
AAATACTGTTAAACTCTTTA+GGG 0.231316 5_1:+20888175 None:intergenic
CATCCCTTGATAAAATTATC+AGG 0.273657 5_1:+20888051 None:intergenic
CCTCACTTGTCTTGAGGAAT+TGG 0.288710 5_1:-20887595 Msa0723320:CDS
TTTCAGATAGGTTGAACTTT+TGG 0.311729 5_1:+20887628 None:intergenic
TGTTTACACCTTCCGCATTT+GGG 0.334638 5_1:-20888209 Msa0723320:CDS
CTTCGAAGTTGCTGAGTTTG+AGG 0.337667 5_1:+20888332 None:intergenic
ATGAGCATTCAATGCCTTAC+TGG 0.343708 5_1:-20887393 Msa0723320:CDS
TTGTTTACACCTTCCGCATT+TGG 0.348560 5_1:-20888210 Msa0723320:CDS
AACTCAGCAACTTCGAAGTC+TGG 0.352151 5_1:-20888327 Msa0723320:CDS
GTAGGACTAGAAATCCATTC+TGG 0.353036 5_1:+20888275 None:intergenic
CTTCATTGCCACTGAACATA+AGG 0.359972 5_1:+20887868 None:intergenic
TCAGGTATGGATGCAAGATT+TGG 0.366067 5_1:+20887486 None:intergenic
CTTGATAAAATTATCAGGTT+TGG 0.367103 5_1:+20888056 None:intergenic
TATTGAATGCCCTAAATTGT+TGG 0.371984 5_1:-20887988 Msa0723320:CDS
CTTCTATTTCTGAGCAACTT+TGG 0.374317 5_1:+20887568 None:intergenic
CAGGTTCCTGTTTCCCAGAA+TGG 0.374803 5_1:-20888289 Msa0723320:CDS
GCTCCCACACCTTTCTCAAT+TGG 0.382739 5_1:-20888015 Msa0723320:CDS
AAGGCAAGGCCAACAATTTA+GGG 0.385016 5_1:+20887979 None:intergenic
ATTGGAAGGCACATCAGCTT+TGG 0.387314 5_1:+20887414 None:intergenic
AAATGAAGAGTCACAATTGC+AGG 0.392229 5_1:-20888387 Msa0723320:CDS
AGAAATCCATTCTGGGAAAC+AGG 0.398856 5_1:+20888283 None:intergenic
ACTTTAACACTATTCGTAGT+TGG 0.406710 5_1:-20888566 Msa0723320:CDS
AGGTTTCTTAGCATCCCATC+TGG 0.438181 5_1:+20887831 None:intergenic
GCTTGACATATTAGCTTCCT+TGG 0.439627 5_1:+20888445 None:intergenic
CAATAATTTCCAATTGAGAA+AGG 0.441996 5_1:+20888006 None:intergenic
CTGGGTGTTCGAGGATATAC+AGG 0.453391 5_1:-20888308 Msa0723320:CDS
TAATGTGAAGGTCTCCTTGA+AGG 0.454630 5_1:+20888501 None:intergenic
GGTATTGAAAACTTTCAGAT+AGG 0.459152 5_1:+20887616 None:intergenic
TCATGCGATGATGGAGTTGC+AGG 0.460458 5_1:-20888119 Msa0723320:CDS
GCATCCATACCTGACTGGTT+AGG 0.473586 5_1:-20887477 Msa0723320:CDS
CTTCGAAGTCTGGGTGTTCG+AGG 0.474384 5_1:-20888317 Msa0723320:CDS
CTAAGGTTAATGATTTCAGT+TGG 0.478030 5_1:+20887756 None:intergenic
GACGAGGAGTCATGCGATGA+TGG 0.487597 5_1:-20888128 Msa0723320:CDS
TTCATTGCCACTGAACATAA+GGG 0.490881 5_1:+20887869 None:intergenic
CTTCATCTGTCAATGACTTG+AGG 0.493271 5_1:+20887697 None:intergenic
AACTAACTTGCTTTCCAGAT+GGG 0.499249 5_1:-20887845 Msa0723320:CDS
TAGGACTAGAAATCCATTCT+GGG 0.502270 5_1:+20888276 None:intergenic
CGTAGGTTTCCTAACCAGTC+AGG 0.504890 5_1:+20887468 None:intergenic
AAACGGTGTAAAGAGAAAAC+AGG 0.506903 5_1:-20887330 Msa0723320:CDS
TAAGGTTAATGATTTCAGTT+GGG 0.511910 5_1:+20887757 None:intergenic
AAGAGAAAACAGGTGAGGAT+TGG 0.513788 5_1:-20887320 Msa0723320:CDS
TCAATACCTCACTTGTCTTG+AGG 0.519923 5_1:-20887601 Msa0723320:CDS
GTAAGGCATTGAATGCTCAT+TGG 0.519950 5_1:+20887396 None:intergenic
GTTTCCTAACCAGTCAGGTA+TGG 0.524344 5_1:+20887473 None:intergenic
TTAGGACAAATGAACCTTCA+AGG 0.526890 5_1:-20888515 Msa0723320:CDS
AGACCTTCACATTAAGCACT+TGG 0.529013 5_1:-20888492 Msa0723320:CDS
GAACTAACTTGCTTTCCAGA+TGG 0.537059 5_1:-20887846 Msa0723320:CDS
GGACAATTTGAAATTGTCAT+GGG 0.548122 5_1:-20888414 Msa0723320:CDS
CACACAATGTCAGCAATTGA+AGG 0.548405 5_1:+20887514 None:intergenic
CTCATTGATATGCGTATAAG+CGG 0.551048 5_1:-20887945 Msa0723320:CDS
ACTCAGCAACTTCGAAGTCT+GGG 0.552892 5_1:-20888326 Msa0723320:CDS
TATAAGCGGAAAATGCAATA+CGG 0.553844 5_1:-20887931 Msa0723320:CDS
TTTCCAATTGAGAAAGGTGT+GGG 0.554713 5_1:+20888012 None:intergenic
GAAAACATCAGAACATTCTA+CGG 0.557698 5_1:-20887264 Msa0723320:CDS
ATAAGCGGAAAATGCAATAC+GGG 0.561726 5_1:-20887930 Msa0723320:CDS
ATCTTGCATCCATACCTGAC+TGG 0.565687 5_1:-20887482 Msa0723320:CDS
CTTGAATCCCTTATGTTCAG+TGG 0.569665 5_1:-20887876 Msa0723320:CDS
TGGACAATTTGAAATTGTCA+TGG 0.569957 5_1:-20888415 Msa0723320:CDS
ATATTTCTTCGACAGCACTA+AGG 0.577053 5_1:+20887739 None:intergenic
ATTTCCAATTGAGAAAGGTG+TGG 0.577913 5_1:+20888011 None:intergenic
GGCATTGAATGCTCATTGGA+AGG 0.579925 5_1:+20887400 None:intergenic
TCTCCAAGTGCTTAATGTGA+AGG 0.582964 5_1:+20888489 None:intergenic
ACTGTTAAACTCTTTAGGGA+TGG 0.583404 5_1:+20888179 None:intergenic
TGCGATGATGGAGTTGCAGG+AGG 0.604064 5_1:-20888116 Msa0723320:CDS
TTAATTCTTGAAGCAAACGT+AGG 0.605819 5_1:+20887451 None:intergenic
TTGACAGATGAAGAATTACA+AGG 0.608656 5_1:-20887687 Msa0723320:CDS
GAGAGATGGAAGGCAAGGCA+AGG 0.609388 5_1:+20887965 None:intergenic
TCAATGAGAGATGGAAGGCA+AGG 0.612167 5_1:+20887960 None:intergenic
TAAAAGTGTAATGAATGCCA+AGG 0.617269 5_1:-20888462 Msa0723320:CDS
GTTGCAGTGAGTTAGAGAAA+CGG 0.619610 5_1:-20887347 Msa0723320:CDS
ACACAATGTCAGCAATTGAA+GGG 0.626283 5_1:+20887515 None:intergenic
TCAAACGTTTCAGACCAGTA+AGG 0.626808 5_1:+20887379 None:intergenic
ACAATTGCAGGAAAATGTTG+AGG 0.630547 5_1:-20888375 Msa0723320:CDS
ATACGCATATCAATGAGAGA+TGG 0.631287 5_1:+20887951 None:intergenic
GATGGTAGCTTCCCCAAATG+CGG 0.644186 5_1:+20888197 None:intergenic
GTTTACACCTTCCGCATTTG+GGG 0.646342 5_1:-20888208 Msa0723320:CDS
GCATATCAATGAGAGATGGA+AGG 0.649270 5_1:+20887955 None:intergenic
TAATATGTCAAGCATGTGCG+TGG 0.652604 5_1:-20888435 Msa0723320:CDS
GTAGCTTCCCCAAATGCGGA+AGG 0.659246 5_1:+20888201 None:intergenic
GTGTAAAGAGAAAACAGGTG+AGG 0.675563 5_1:-20887325 Msa0723320:CDS
TGACAGATGAAGAATTACAA+GGG 0.679371 5_1:-20887686 Msa0723320:CDS
CCAATTCCTCAAGACAAGTG+AGG 0.681422 5_1:+20887595 None:intergenic
TCATGTAAAATACTTAGACG+AGG 0.738566 5_1:-20888144 Msa0723320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATTCAAATTTGT+AGG - chr5_1:20888044-20888063 Msa0723320:CDS 10.0%
!! TAAAAAAAATTCAAATTTGT+AGG - chr5_1:20888044-20888063 Msa0723320:CDS 10.0%
!!! CTAGTTAAATATTTTAGAGT+AGG + chr5_1:20887590-20887609 None:intergenic 20.0%
!! AAATACTGTTAAACTCTTTA+GGG + chr5_1:20887672-20887691 None:intergenic 20.0%
!! TAAATACTGTTAAACTCTTT+AGG + chr5_1:20887673-20887692 None:intergenic 20.0%
!!! TTTTATATGTCTAGAAAAAC+TGG - chr5_1:20887751-20887770 Msa0723320:CDS 20.0%
!!! AAACCTGATAATTTTATCAA+GGG - chr5_1:20887790-20887809 Msa0723320:CDS 20.0%
!!! GAATTTTTTTTAGAGAATTG+AGG + chr5_1:20888036-20888055 None:intergenic 20.0%
!!! CTAGTTAAATATTTTAGAGT+AGG + chr5_1:20887590-20887609 None:intergenic 20.0%
!! AAATACTGTTAAACTCTTTA+GGG + chr5_1:20887672-20887691 None:intergenic 20.0%
!! TAAATACTGTTAAACTCTTT+AGG + chr5_1:20887673-20887692 None:intergenic 20.0%
!!! TTTTATATGTCTAGAAAAAC+TGG - chr5_1:20887751-20887770 Msa0723320:CDS 20.0%
!!! AAACCTGATAATTTTATCAA+GGG - chr5_1:20887790-20887809 Msa0723320:CDS 20.0%
!!! GAATTTTTTTTAGAGAATTG+AGG + chr5_1:20888036-20888055 None:intergenic 20.0%
!! GAATAGTGTTAAAGTTTTCA+AGG + chr5_1:20887273-20887292 None:intergenic 25.0%
! CTTGATAAAATTATCAGGTT+TGG + chr5_1:20887791-20887810 None:intergenic 25.0%
!! CAAACCTGATAATTTTATCA+AGG - chr5_1:20887789-20887808 Msa0723320:CDS 25.0%
! CAATAATTTCCAATTGAGAA+AGG + chr5_1:20887841-20887860 None:intergenic 25.0%
! TAAGGTTAATGATTTCAGTT+GGG + chr5_1:20888090-20888109 None:intergenic 25.0%
!! GAATAGTGTTAAAGTTTTCA+AGG + chr5_1:20887273-20887292 None:intergenic 25.0%
! CTTGATAAAATTATCAGGTT+TGG + chr5_1:20887791-20887810 None:intergenic 25.0%
!! CAAACCTGATAATTTTATCA+AGG - chr5_1:20887789-20887808 Msa0723320:CDS 25.0%
! CAATAATTTCCAATTGAGAA+AGG + chr5_1:20887841-20887860 None:intergenic 25.0%
! TAAGGTTAATGATTTCAGTT+GGG + chr5_1:20888090-20888109 None:intergenic 25.0%
ACTTTAACACTATTCGTAGT+TGG - chr5_1:20887278-20887297 Msa0723320:CDS 30.0%
TTCGTAGTTGGCATTAAAAA+AGG - chr5_1:20887290-20887309 Msa0723320:CDS 30.0%
TCGTAGTTGGCATTAAAAAA+GGG - chr5_1:20887291-20887310 Msa0723320:CDS 30.0%
! TAAAAGTGTAATGAATGCCA+AGG - chr5_1:20887382-20887401 Msa0723320:CDS 30.0%
! TGGACAATTTGAAATTGTCA+TGG - chr5_1:20887429-20887448 Msa0723320:CDS 30.0%
! GGACAATTTGAAATTGTCAT+GGG - chr5_1:20887430-20887449 Msa0723320:CDS 30.0%
TCATGTAAAATACTTAGACG+AGG - chr5_1:20887700-20887719 Msa0723320:CDS 30.0%
CATCCCTTGATAAAATTATC+AGG + chr5_1:20887796-20887815 None:intergenic 30.0%
TATTGAATGCCCTAAATTGT+TGG - chr5_1:20887856-20887875 Msa0723320:CDS 30.0%
TATAAGCGGAAAATGCAATA+CGG - chr5_1:20887913-20887932 Msa0723320:CDS 30.0%
CTAAGGTTAATGATTTCAGT+TGG + chr5_1:20888091-20888110 None:intergenic 30.0%
TTGACAGATGAAGAATTACA+AGG - chr5_1:20888157-20888176 Msa0723320:CDS 30.0%
TGACAGATGAAGAATTACAA+GGG - chr5_1:20888158-20888177 Msa0723320:CDS 30.0%
!! TTTCAGATAGGTTGAACTTT+TGG + chr5_1:20888219-20888238 None:intergenic 30.0%
! GGTATTGAAAACTTTCAGAT+AGG + chr5_1:20888231-20888250 None:intergenic 30.0%
TTAATTCTTGAAGCAAACGT+AGG + chr5_1:20888396-20888415 None:intergenic 30.0%
!! CATTGAATGTGAGCTATTTT+TGG + chr5_1:20888550-20888569 None:intergenic 30.0%
GAAAACATCAGAACATTCTA+CGG - chr5_1:20888580-20888599 Msa0723320:CDS 30.0%
ACTTTAACACTATTCGTAGT+TGG - chr5_1:20887278-20887297 Msa0723320:CDS 30.0%
TTCGTAGTTGGCATTAAAAA+AGG - chr5_1:20887290-20887309 Msa0723320:CDS 30.0%
TCGTAGTTGGCATTAAAAAA+GGG - chr5_1:20887291-20887310 Msa0723320:CDS 30.0%
! TAAAAGTGTAATGAATGCCA+AGG - chr5_1:20887382-20887401 Msa0723320:CDS 30.0%
! TGGACAATTTGAAATTGTCA+TGG - chr5_1:20887429-20887448 Msa0723320:CDS 30.0%
! GGACAATTTGAAATTGTCAT+GGG - chr5_1:20887430-20887449 Msa0723320:CDS 30.0%
TCATGTAAAATACTTAGACG+AGG - chr5_1:20887700-20887719 Msa0723320:CDS 30.0%
CATCCCTTGATAAAATTATC+AGG + chr5_1:20887796-20887815 None:intergenic 30.0%
TATTGAATGCCCTAAATTGT+TGG - chr5_1:20887856-20887875 Msa0723320:CDS 30.0%
TATAAGCGGAAAATGCAATA+CGG - chr5_1:20887913-20887932 Msa0723320:CDS 30.0%
CTAAGGTTAATGATTTCAGT+TGG + chr5_1:20888091-20888110 None:intergenic 30.0%
TTGACAGATGAAGAATTACA+AGG - chr5_1:20888157-20888176 Msa0723320:CDS 30.0%
TGACAGATGAAGAATTACAA+GGG - chr5_1:20888158-20888177 Msa0723320:CDS 30.0%
!! TTTCAGATAGGTTGAACTTT+TGG + chr5_1:20888219-20888238 None:intergenic 30.0%
! GGTATTGAAAACTTTCAGAT+AGG + chr5_1:20888231-20888250 None:intergenic 30.0%
TTAATTCTTGAAGCAAACGT+AGG + chr5_1:20888396-20888415 None:intergenic 30.0%
!! CATTGAATGTGAGCTATTTT+TGG + chr5_1:20888550-20888569 None:intergenic 30.0%
GAAAACATCAGAACATTCTA+CGG - chr5_1:20888580-20888599 Msa0723320:CDS 30.0%
TTAGGACAAATGAACCTTCA+AGG - chr5_1:20887329-20887348 Msa0723320:CDS 35.0%
AAATGAAGAGTCACAATTGC+AGG - chr5_1:20887457-20887476 Msa0723320:CDS 35.0%
ACAATTGCAGGAAAATGTTG+AGG - chr5_1:20887469-20887488 Msa0723320:CDS 35.0%
TAGGACTAGAAATCCATTCT+GGG + chr5_1:20887571-20887590 None:intergenic 35.0%
! ACTGTTAAACTCTTTAGGGA+TGG + chr5_1:20887668-20887687 None:intergenic 35.0%
! TTTCCAATTGAGAAAGGTGT+GGG + chr5_1:20887835-20887854 None:intergenic 35.0%
ATTTCCAATTGAGAAAGGTG+TGG + chr5_1:20887836-20887855 None:intergenic 35.0%
ATACGCATATCAATGAGAGA+TGG + chr5_1:20887896-20887915 None:intergenic 35.0%
CTCATTGATATGCGTATAAG+CGG - chr5_1:20887899-20887918 Msa0723320:CDS 35.0%
ATAAGCGGAAAATGCAATAC+GGG - chr5_1:20887914-20887933 Msa0723320:CDS 35.0%
TTCATTGCCACTGAACATAA+GGG + chr5_1:20887978-20887997 None:intergenic 35.0%
!! AACTAACTTGCTTTCCAGAT+GGG - chr5_1:20887999-20888018 Msa0723320:CDS 35.0%
ATATTTCTTCGACAGCACTA+AGG + chr5_1:20888108-20888127 None:intergenic 35.0%
!! CTTCTATTTCTGAGCAACTT+TGG + chr5_1:20888279-20888298 None:intergenic 35.0%
ACACAATGTCAGCAATTGAA+GGG + chr5_1:20888332-20888351 None:intergenic 35.0%
AAACGGTGTAAAGAGAAAAC+AGG - chr5_1:20888514-20888533 Msa0723320:CDS 35.0%
TTAGGACAAATGAACCTTCA+AGG - chr5_1:20887329-20887348 Msa0723320:CDS 35.0%
AAATGAAGAGTCACAATTGC+AGG - chr5_1:20887457-20887476 Msa0723320:CDS 35.0%
ACAATTGCAGGAAAATGTTG+AGG - chr5_1:20887469-20887488 Msa0723320:CDS 35.0%
TAGGACTAGAAATCCATTCT+GGG + chr5_1:20887571-20887590 None:intergenic 35.0%
! ACTGTTAAACTCTTTAGGGA+TGG + chr5_1:20887668-20887687 None:intergenic 35.0%
! TTTCCAATTGAGAAAGGTGT+GGG + chr5_1:20887835-20887854 None:intergenic 35.0%
ATTTCCAATTGAGAAAGGTG+TGG + chr5_1:20887836-20887855 None:intergenic 35.0%
ATACGCATATCAATGAGAGA+TGG + chr5_1:20887896-20887915 None:intergenic 35.0%
CTCATTGATATGCGTATAAG+CGG - chr5_1:20887899-20887918 Msa0723320:CDS 35.0%
ATAAGCGGAAAATGCAATAC+GGG - chr5_1:20887914-20887933 Msa0723320:CDS 35.0%
TTCATTGCCACTGAACATAA+GGG + chr5_1:20887978-20887997 None:intergenic 35.0%
!! AACTAACTTGCTTTCCAGAT+GGG - chr5_1:20887999-20888018 Msa0723320:CDS 35.0%
ATATTTCTTCGACAGCACTA+AGG + chr5_1:20888108-20888127 None:intergenic 35.0%
!! CTTCTATTTCTGAGCAACTT+TGG + chr5_1:20888279-20888298 None:intergenic 35.0%
ACACAATGTCAGCAATTGAA+GGG + chr5_1:20888332-20888351 None:intergenic 35.0%
AAACGGTGTAAAGAGAAAAC+AGG - chr5_1:20888514-20888533 Msa0723320:CDS 35.0%
! GGGTATCTTTTAGCAGAGTT+AGG - chr5_1:20887311-20887330 Msa0723320:CDS 40.0%
TAATGTGAAGGTCTCCTTGA+AGG + chr5_1:20887346-20887365 None:intergenic 40.0%
AGACCTTCACATTAAGCACT+TGG - chr5_1:20887352-20887371 Msa0723320:CDS 40.0%
TCTCCAAGTGCTTAATGTGA+AGG + chr5_1:20887358-20887377 None:intergenic 40.0%
! GCTTGACATATTAGCTTCCT+TGG + chr5_1:20887402-20887421 None:intergenic 40.0%
TAATATGTCAAGCATGTGCG+TGG - chr5_1:20887409-20887428 Msa0723320:CDS 40.0%
! AGAAATCCATTCTGGGAAAC+AGG + chr5_1:20887564-20887583 None:intergenic 40.0%
GTAGGACTAGAAATCCATTC+TGG + chr5_1:20887572-20887591 None:intergenic 40.0%
TTGTTTACACCTTCCGCATT+TGG - chr5_1:20887634-20887653 Msa0723320:CDS 40.0%
TGTTTACACCTTCCGCATTT+GGG - chr5_1:20887635-20887654 Msa0723320:CDS 40.0%
AAGGCAAGGCCAACAATTTA+GGG + chr5_1:20887868-20887887 None:intergenic 40.0%
GCATATCAATGAGAGATGGA+AGG + chr5_1:20887892-20887911 None:intergenic 40.0%
CTTGAATCCCTTATGTTCAG+TGG - chr5_1:20887968-20887987 Msa0723320:CDS 40.0%
CTTCATTGCCACTGAACATA+AGG + chr5_1:20887979-20887998 None:intergenic 40.0%
!! GAACTAACTTGCTTTCCAGA+TGG - chr5_1:20887998-20888017 Msa0723320:CDS 40.0%
CTTCATCTGTCAATGACTTG+AGG + chr5_1:20888150-20888169 None:intergenic 40.0%
TCAATACCTCACTTGTCTTG+AGG - chr5_1:20888243-20888262 Msa0723320:CDS 40.0%
CACACAATGTCAGCAATTGA+AGG + chr5_1:20888333-20888352 None:intergenic 40.0%
TCAGGTATGGATGCAAGATT+TGG + chr5_1:20888361-20888380 None:intergenic 40.0%
!! GTAAGGCATTGAATGCTCAT+TGG + chr5_1:20888451-20888470 None:intergenic 40.0%
ATGAGCATTCAATGCCTTAC+TGG - chr5_1:20888451-20888470 Msa0723320:CDS 40.0%
TCAAACGTTTCAGACCAGTA+AGG + chr5_1:20888468-20888487 None:intergenic 40.0%
GTTGCAGTGAGTTAGAGAAA+CGG - chr5_1:20888497-20888516 Msa0723320:CDS 40.0%
GTGTAAAGAGAAAACAGGTG+AGG - chr5_1:20888519-20888538 Msa0723320:CDS 40.0%
AAGAGAAAACAGGTGAGGAT+TGG - chr5_1:20888524-20888543 Msa0723320:CDS 40.0%
! GGGTATCTTTTAGCAGAGTT+AGG - chr5_1:20887311-20887330 Msa0723320:CDS 40.0%
TAATGTGAAGGTCTCCTTGA+AGG + chr5_1:20887346-20887365 None:intergenic 40.0%
AGACCTTCACATTAAGCACT+TGG - chr5_1:20887352-20887371 Msa0723320:CDS 40.0%
TCTCCAAGTGCTTAATGTGA+AGG + chr5_1:20887358-20887377 None:intergenic 40.0%
! GCTTGACATATTAGCTTCCT+TGG + chr5_1:20887402-20887421 None:intergenic 40.0%
TAATATGTCAAGCATGTGCG+TGG - chr5_1:20887409-20887428 Msa0723320:CDS 40.0%
! AGAAATCCATTCTGGGAAAC+AGG + chr5_1:20887564-20887583 None:intergenic 40.0%
GTAGGACTAGAAATCCATTC+TGG + chr5_1:20887572-20887591 None:intergenic 40.0%
TTGTTTACACCTTCCGCATT+TGG - chr5_1:20887634-20887653 Msa0723320:CDS 40.0%
TGTTTACACCTTCCGCATTT+GGG - chr5_1:20887635-20887654 Msa0723320:CDS 40.0%
AAGGCAAGGCCAACAATTTA+GGG + chr5_1:20887868-20887887 None:intergenic 40.0%
GCATATCAATGAGAGATGGA+AGG + chr5_1:20887892-20887911 None:intergenic 40.0%
CTTGAATCCCTTATGTTCAG+TGG - chr5_1:20887968-20887987 Msa0723320:CDS 40.0%
CTTCATTGCCACTGAACATA+AGG + chr5_1:20887979-20887998 None:intergenic 40.0%
!! GAACTAACTTGCTTTCCAGA+TGG - chr5_1:20887998-20888017 Msa0723320:CDS 40.0%
CTTCATCTGTCAATGACTTG+AGG + chr5_1:20888150-20888169 None:intergenic 40.0%
TCAATACCTCACTTGTCTTG+AGG - chr5_1:20888243-20888262 Msa0723320:CDS 40.0%
CACACAATGTCAGCAATTGA+AGG + chr5_1:20888333-20888352 None:intergenic 40.0%
TCAGGTATGGATGCAAGATT+TGG + chr5_1:20888361-20888380 None:intergenic 40.0%
!! GTAAGGCATTGAATGCTCAT+TGG + chr5_1:20888451-20888470 None:intergenic 40.0%
ATGAGCATTCAATGCCTTAC+TGG - chr5_1:20888451-20888470 Msa0723320:CDS 40.0%
TCAAACGTTTCAGACCAGTA+AGG + chr5_1:20888468-20888487 None:intergenic 40.0%
GTTGCAGTGAGTTAGAGAAA+CGG - chr5_1:20888497-20888516 Msa0723320:CDS 40.0%
GTGTAAAGAGAAAACAGGTG+AGG - chr5_1:20888519-20888538 Msa0723320:CDS 40.0%
AAGAGAAAACAGGTGAGGAT+TGG - chr5_1:20888524-20888543 Msa0723320:CDS 40.0%
CTTCGAAGTTGCTGAGTTTG+AGG + chr5_1:20887515-20887534 None:intergenic 45.0%
AACTCAGCAACTTCGAAGTC+TGG - chr5_1:20887517-20887536 Msa0723320:CDS 45.0%
ACTCAGCAACTTCGAAGTCT+GGG - chr5_1:20887518-20887537 Msa0723320:CDS 45.0%
GTTTACACCTTCCGCATTTG+GGG - chr5_1:20887636-20887655 Msa0723320:CDS 45.0%
CAAGGCAAGGCCAACAATTT+AGG + chr5_1:20887869-20887888 None:intergenic 45.0%
TCAATGAGAGATGGAAGGCA+AGG + chr5_1:20887887-20887906 None:intergenic 45.0%
AGGTTTCTTAGCATCCCATC+TGG + chr5_1:20888016-20888035 None:intergenic 45.0%
CCAATTCCTCAAGACAAGTG+AGG + chr5_1:20888252-20888271 None:intergenic 45.0%
CCTCACTTGTCTTGAGGAAT+TGG - chr5_1:20888249-20888268 Msa0723320:CDS 45.0%
ATCTTGCATCCATACCTGAC+TGG - chr5_1:20888362-20888381 Msa0723320:CDS 45.0%
GTTTCCTAACCAGTCAGGTA+TGG + chr5_1:20888374-20888393 None:intergenic 45.0%
! ATTGGAAGGCACATCAGCTT+TGG + chr5_1:20888433-20888452 None:intergenic 45.0%
! GGCATTGAATGCTCATTGGA+AGG + chr5_1:20888447-20888466 None:intergenic 45.0%
CTTCGAAGTTGCTGAGTTTG+AGG + chr5_1:20887515-20887534 None:intergenic 45.0%
AACTCAGCAACTTCGAAGTC+TGG - chr5_1:20887517-20887536 Msa0723320:CDS 45.0%
ACTCAGCAACTTCGAAGTCT+GGG - chr5_1:20887518-20887537 Msa0723320:CDS 45.0%
GTTTACACCTTCCGCATTTG+GGG - chr5_1:20887636-20887655 Msa0723320:CDS 45.0%
CAAGGCAAGGCCAACAATTT+AGG + chr5_1:20887869-20887888 None:intergenic 45.0%
TCAATGAGAGATGGAAGGCA+AGG + chr5_1:20887887-20887906 None:intergenic 45.0%
AGGTTTCTTAGCATCCCATC+TGG + chr5_1:20888016-20888035 None:intergenic 45.0%
CCAATTCCTCAAGACAAGTG+AGG + chr5_1:20888252-20888271 None:intergenic 45.0%
CCTCACTTGTCTTGAGGAAT+TGG - chr5_1:20888249-20888268 Msa0723320:CDS 45.0%
ATCTTGCATCCATACCTGAC+TGG - chr5_1:20888362-20888381 Msa0723320:CDS 45.0%
GTTTCCTAACCAGTCAGGTA+TGG + chr5_1:20888374-20888393 None:intergenic 45.0%
! ATTGGAAGGCACATCAGCTT+TGG + chr5_1:20888433-20888452 None:intergenic 45.0%
! GGCATTGAATGCTCATTGGA+AGG + chr5_1:20888447-20888466 None:intergenic 45.0%
CTGGGTGTTCGAGGATATAC+AGG - chr5_1:20887536-20887555 Msa0723320:CDS 50.0%
CAGGTTCCTGTTTCCCAGAA+TGG - chr5_1:20887555-20887574 Msa0723320:CDS 50.0%
GATGGTAGCTTCCCCAAATG+CGG + chr5_1:20887650-20887669 None:intergenic 50.0%
!! TCATGCGATGATGGAGTTGC+AGG - chr5_1:20887725-20887744 Msa0723320:CDS 50.0%
GCTCCCACACCTTTCTCAAT+TGG - chr5_1:20887829-20887848 Msa0723320:CDS 50.0%
! GCATCCATACCTGACTGGTT+AGG - chr5_1:20888367-20888386 Msa0723320:CDS 50.0%
CGTAGGTTTCCTAACCAGTC+AGG + chr5_1:20888379-20888398 None:intergenic 50.0%
CTGGGTGTTCGAGGATATAC+AGG - chr5_1:20887536-20887555 Msa0723320:CDS 50.0%
CAGGTTCCTGTTTCCCAGAA+TGG - chr5_1:20887555-20887574 Msa0723320:CDS 50.0%
GATGGTAGCTTCCCCAAATG+CGG + chr5_1:20887650-20887669 None:intergenic 50.0%
!! TCATGCGATGATGGAGTTGC+AGG - chr5_1:20887725-20887744 Msa0723320:CDS 50.0%
GCTCCCACACCTTTCTCAAT+TGG - chr5_1:20887829-20887848 Msa0723320:CDS 50.0%
! GCATCCATACCTGACTGGTT+AGG - chr5_1:20888367-20888386 Msa0723320:CDS 50.0%
CGTAGGTTTCCTAACCAGTC+AGG + chr5_1:20888379-20888398 None:intergenic 50.0%
CTTCGAAGTCTGGGTGTTCG+AGG - chr5_1:20887527-20887546 Msa0723320:CDS 55.0%
GTAGCTTCCCCAAATGCGGA+AGG + chr5_1:20887646-20887665 None:intergenic 55.0%
GACGAGGAGTCATGCGATGA+TGG - chr5_1:20887716-20887735 Msa0723320:CDS 55.0%
!! TGCGATGATGGAGTTGCAGG+AGG - chr5_1:20887728-20887747 Msa0723320:CDS 55.0%
GAGAGATGGAAGGCAAGGCA+AGG + chr5_1:20887882-20887901 None:intergenic 55.0%
CTTCGAAGTCTGGGTGTTCG+AGG - chr5_1:20887527-20887546 Msa0723320:CDS 55.0%
GTAGCTTCCCCAAATGCGGA+AGG + chr5_1:20887646-20887665 None:intergenic 55.0%
GACGAGGAGTCATGCGATGA+TGG - chr5_1:20887716-20887735 Msa0723320:CDS 55.0%
!! TGCGATGATGGAGTTGCAGG+AGG - chr5_1:20887728-20887747 Msa0723320:CDS 55.0%
GAGAGATGGAAGGCAAGGCA+AGG + chr5_1:20887882-20887901 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 20887260 20888606 20887260 ID=Msa0723320;Name=Msa0723320
chr5_1 mRNA 20887260 20888606 20887260 ID=Msa0723320-mRNA-1;Parent=Msa0723320;Name=Msa0723320-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|448
chr5_1 exon 20887260 20888606 20887260 ID=Msa0723320-mRNA-1:exon:8009;Parent=Msa0723320-mRNA-1
chr5_1 CDS 20887260 20888606 20887260 ID=Msa0723320-mRNA-1:cds;Parent=Msa0723320-mRNA-1
Gene Sequence

>Msa0723320

ATGTTGGCATCCTTGAAAACTTTAACACTATTCGTAGTTGGCATTAAAAAAGGGTATCTTTTAGCAGAGTTAGGACAAATGAACCTTCAAGGAGACCTTCACATTAAGCACTTGGAGAGAGTTAAAAGTGTAATGAATGCCAAGGAAGCTAATATGTCAAGCATGTGCGTGGACAATTTGAAATTGTCATGGGATAGAAATGAAGAGTCACAATTGCAGGAAAATGTTGAGGAGATTCTTGAAGTGCTTCAACCTCAAACTCAGCAACTTCGAAGTCTGGGTGTTCGAGGATATACAGGTTCCTGTTTCCCAGAATGGATTTCTAGTCCTACTCTAAAATATTTAACTAGTTTACAACTCGTGAATTGCAAAAGTTGTTTACACCTTCCGCATTTGGGGAAGCTACCATCCCTAAAGAGTTTAACAGTATTTAACATGAGTCATGTAAAATACTTAGACGAGGAGTCATGCGATGATGGAGTTGCAGGAGGTTTTATATGTCTAGAAAAACTGGATCTAGTGAAGCTGCCAAACCTGATAATTTTATCAAGGGATGATAGAGAAAACATGCTCCCACACCTTTCTCAATTGGAAATTATTGAATGCCCTAAATTGTTGGCCTTGCCTTGCCTTCCATCTCTCATTGATATGCGTATAAGCGGAAAATGCAATACGGGTTTACTAAGTTCAATTCAAAAACTCGTTAGTCTTGAATCCCTTATGTTCAGTGGCAATGAAGAACTAACTTGCTTTCCAGATGGGATGCTAAGAAACCTCAATTCTCTAAAAAAAATTCAAATTTGTAGGCTTTCTAAACTTGAAAGCTTCCCAACTGAAATCATTAACCTTAGTGCTGTCGAAGAAATATGTATTACTGATTGTGAAAACCTCAAGTCATTGACAGATGAAGAATTACAAGGGCTGCACTCTCTTAAGAGATTGAGTATTGTGAAGTACCAAAAGTTCAACCTATCTGAAAGTTTTCAATACCTCACTTGTCTTGAGGAATTGGTGATCCAAAGTTGCTCAGAAATAGAAGTTTTGCATGAGAGTTTACAACATATGACTTCCCTTCAATTGCTGACATTGTGTGATCTTCCAAATCTTGCATCCATACCTGACTGGTTAGGAAACCTACGTTTGCTTCAAGAATTAAATATTTCTCAGTGTCCAAAGCTGATGTGCCTTCCAATGAGCATTCAATGCCTTACTGGTCTGAAACGTTTGAGTATTTATAGTTGCAGTGAGTTAGAGAAACGGTGTAAAGAGAAAACAGGTGAGGATTGGCCAAAAATAGCTCACATTCAATGCATTGTAGTAGAAAACATCAGAACATTCTACGGATAA
Protein sequence

>Msa0723320

MLASLKTLTLFVVGIKKGYLLAELGQMNLQGDLHIKHLERVKSVMNAKEANMSSMCVDNLKLSWDRNEESQLQENVEEILEVLQPQTQQLRSLGVRGYTGSCFPEWISSPTLKYLTSLQLVNCKSCLHLPHLGKLPSLKSLTVFNMSHVKYLDEESCDDGVAGGFICLEKLDLVKLPNLIILSRDDRENMLPHLSQLEIIECPKLLALPCLPSLIDMRISGKCNTGLLSSIQKLVSLESLMFSGNEELTCFPDGMLRNLNSLKKIQICRLSKLESFPTEIINLSAVEEICITDCENLKSLTDEELQGLHSLKRLSIVKYQKFNLSESFQYLTCLEELVIQSCSEIEVLHESLQHMTSLQLLTLCDLPNLASIPDWLGNLRLLQELNISQCPKLMCLPMSIQCLTGLKRLSIYSCSELEKRCKEKTGEDWPKIAHIQCIVVENIRTFYG*