Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336360 | XP_013458297.1 | 52.128 | 94 | 45 | 0 | 83 | 176 | 73 | 166 | 3.38e-25 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336360 | A0A072UTD4 | 52.128 | 94 | 45 | 0 | 83 | 176 | 73 | 166 | 1.61e-25 | 106 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0723320 | Msa1336360 | 0.800544 | 1.371236e-48 | -8.615850e-47 |
| Msa0723430 | Msa1336360 | 0.807056 | 6.089571e-50 | -8.615850e-47 |
| Msa0199950 | Msa1336360 | 0.807551 | 4.782136e-50 | -8.615850e-47 |
| Msa1246040 | Msa1336360 | 0.819529 | 1.107418e-52 | -8.615850e-47 |
| Msa0439700 | Msa1336360 | 0.801580 | 8.420858e-49 | -8.615850e-47 |
| Msa0998890 | Msa1336360 | -0.806924 | 6.494292e-50 | -8.615850e-47 |
| Msa0885320 | Msa1336360 | 0.803010 | 4.275307e-49 | -8.615850e-47 |
| Msa0912210 | Msa1336360 | 0.802016 | 6.852280e-49 | -8.615850e-47 |
| Msa0912310 | Msa1336360 | 0.803339 | 3.653924e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336360 | MtrunA17_Chr8g0359311 | 54.321 | 81 | 36 | 1 | 96 | 176 | 10 | 89 | 2.38e-25 | 94.0 |
| Msa1336360 | MtrunA17_Chr7g0270401 | 48.837 | 86 | 44 | 0 | 90 | 175 | 176 | 261 | 2.10e-23 | 93.6 |
| Msa1336360 | MtrunA17_Chr1g0206471 | 46.512 | 86 | 46 | 0 | 90 | 175 | 177 | 262 | 4.95e-20 | 84.7 |
| Msa1336360 | MtrunA17_Chr1g0151111 | 45.238 | 84 | 45 | 1 | 100 | 183 | 14 | 96 | 4.75e-15 | 68.9 |
| Msa1336360 | MtrunA17_Chr1g0178231 | 45.238 | 84 | 44 | 1 | 100 | 183 | 14 | 95 | 1.35e-14 | 67.4 |
| Msa1336360 | MtrunA17_Chr1g0207921 | 40.506 | 79 | 43 | 1 | 101 | 175 | 109 | 187 | 6.39e-13 | 64.3 |
| Msa1336360 | MtrunA17_Chr7g0237161 | 40.541 | 74 | 44 | 0 | 90 | 163 | 6 | 79 | 6.95e-13 | 61.2 |
| Msa1336360 | MtrunA17_Chr8g0361581 | 42.254 | 71 | 41 | 0 | 105 | 175 | 88 | 158 | 7.16e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCTGAAAAGATTGAATT+TGG | 0.171336 | tig0001052:+28243 | Msa1336360:CDS |
| CAAACACTTCGTTAAATTAA+AGG | 0.189226 | tig0001052:-28805 | None:intergenic |
| CAATATGCTCATTTCAAAAT+TGG | 0.202477 | tig0001052:+28488 | Msa1336360:CDS |
| CTTCTGGATTCCAATGGTTT+TGG | 0.229042 | tig0001052:+27796 | Msa1336360:CDS |
| CAAAACCTTTGTTCCACTTC+TGG | 0.236990 | tig0001052:-28035 | None:intergenic |
| GTTGATGTGGTGATGGAATA+AGG | 0.252441 | tig0001052:+28633 | Msa1336360:three_prime_UTR |
| AGCTTCTTCTTCATCGCTTC+TGG | 0.268444 | tig0001052:+27780 | Msa1336360:CDS |
| ATCAATCAACTTCAAAGATT+TGG | 0.273286 | tig0001052:-28420 | None:intergenic |
| CATACCACCGTTGGAATTAT+CGG | 0.280404 | tig0001052:-28101 | None:intergenic |
| TCCAACTTGCTGCTCCTATA+TGG | 0.363987 | tig0001052:+28732 | Msa1336360:three_prime_UTR |
| TTGATGTGGTGATGGAATAA+GGG | 0.365130 | tig0001052:+28634 | Msa1336360:three_prime_UTR |
| ATTTAACGAAGTGTTTGTAT+TGG | 0.370509 | tig0001052:+28811 | Msa1336360:three_prime_UTR |
| GGTGGTGATGGTGCCGGAAG+TGG | 0.376779 | tig0001052:+27877 | Msa1336360:CDS |
| GGCAGTGACGGAAGTAGATA+TGG | 0.379738 | tig0001052:+27825 | Msa1336360:CDS |
| AGTCTCATTTCTCCAGCTTC+CGG | 0.386869 | tig0001052:-28578 | None:intergenic |
| ATCTGCCATAGTTCCACTTC+CGG | 0.406287 | tig0001052:-27890 | None:intergenic |
| GTGGTTGGTGCACCGGAAGC+TGG | 0.450807 | tig0001052:+28566 | Msa1336360:CDS |
| ATGACAGAATTCGGTGGTTA+CGG | 0.461745 | tig0001052:+27998 | Msa1336360:intron |
| CTGAAAAGATTGAATTTGGT+TGG | 0.483115 | tig0001052:+28247 | Msa1336360:CDS |
| TTTATGAGATGACGTTGGAT+AGG | 0.487127 | tig0001052:+28393 | Msa1336360:CDS |
| GCCATATAGGAGCAGCAAGT+TGG | 0.488125 | tig0001052:-28733 | None:intergenic |
| AAAGATTGAATTTGGTTGGT+TGG | 0.494863 | tig0001052:+28251 | Msa1336360:CDS |
| ATTTCAAAATTGGCGGTGGT+TGG | 0.496032 | tig0001052:+28498 | Msa1336360:CDS |
| TTGGTGGTAGGTGGTTACGG+GGG | 0.500729 | tig0001052:+27856 | Msa1336360:CDS |
| GGAATAAGGGGTTGGAAAAG+AGG | 0.506993 | tig0001052:+28647 | Msa1336360:three_prime_UTR |
| TCATCGCTTCTGGATTCCAA+TGG | 0.514048 | tig0001052:+27790 | Msa1336360:CDS |
| TAATTCCAACGGTGGTATGA+AGG | 0.518797 | tig0001052:+28105 | Msa1336360:CDS |
| TTGATGACTGTGGTAACATA+TGG | 0.520090 | tig0001052:+28438 | Msa1336360:CDS |
| ATGAGATGACGTTGGATAGG+AGG | 0.520878 | tig0001052:+28396 | Msa1336360:CDS |
| GTGTATCGTGGTTGGTGCAC+CGG | 0.528931 | tig0001052:+28559 | Msa1336360:CDS |
| CGAAGTGTTTGTATTGGATG+TGG | 0.529391 | tig0001052:+28817 | Msa1336360:three_prime_UTR |
| TGCCGCACCTCCAAAACCAT+TGG | 0.533059 | tig0001052:-27806 | None:intergenic |
| TTCCAGGAACTTGCTTACAT+AGG | 0.533111 | tig0001052:+28368 | Msa1336360:intron |
| GAATTCGGTGGTTACGGAGG+TGG | 0.534697 | tig0001052:+28004 | Msa1336360:intron |
| TATGCTCATTTCAAAATTGG+CGG | 0.535363 | tig0001052:+28491 | Msa1336360:CDS |
| GTGGTGATGGAATAAGGGGT+TGG | 0.551520 | tig0001052:+28639 | Msa1336360:three_prime_UTR |
| TGGTGCCGGAAGTGGAACTA+TGG | 0.556597 | tig0001052:+27885 | Msa1336360:CDS |
| GCAGTGACGGAAGTAGATAT+GGG | 0.565274 | tig0001052:+27826 | Msa1336360:CDS |
| TGATGAGGCCGACGGTGGAG+TGG | 0.573797 | tig0001052:+28069 | Msa1336360:CDS |
| GCTCATTTCAAAATTGGCGG+TGG | 0.581764 | tig0001052:+28494 | Msa1336360:CDS |
| GGTGGTGACAGTGCCAGAAG+TGG | 0.582949 | tig0001052:+28022 | Msa1336360:CDS |
| AGGATATGTTGATGTGGTGA+TGG | 0.585302 | tig0001052:+28626 | Msa1336360:three_prime_UTR |
| CATGACCTTCATACCACCGT+TGG | 0.590970 | tig0001052:-28110 | None:intergenic |
| TCATCAAGAATTGTGTATCG+TGG | 0.596337 | tig0001052:+28547 | Msa1336360:CDS |
| TTTGGTGGTAGGTGGTTACG+GGG | 0.597789 | tig0001052:+27855 | Msa1336360:CDS |
| GGCTTTGATGAGGCCGACGG+TGG | 0.599577 | tig0001052:+28064 | Msa1336360:CDS |
| TTTGAATGGTGGCTTTGATG+AGG | 0.613141 | tig0001052:+28054 | Msa1336360:CDS |
| ACCGCCATATTACATAGCTT+AGG | 0.620235 | tig0001052:-28840 | None:intergenic |
| GAATCTCGCCACTCCACCGT+CGG | 0.620632 | tig0001052:-28077 | None:intergenic |
| CAGTGCCAGAAGTGGAACAA+AGG | 0.629184 | tig0001052:+28030 | Msa1336360:CDS |
| CAAGAATTGTGTATCGTGGT+TGG | 0.630355 | tig0001052:+28551 | Msa1336360:CDS |
| TGATGTGGTGATGGAATAAG+GGG | 0.654375 | tig0001052:+28635 | Msa1336360:three_prime_UTR |
| GGTGGCTTTGATGAGGCCGA+CGG | 0.666667 | tig0001052:+28061 | Msa1336360:CDS |
| ACAGAATTCGGTGGTTACGG+AGG | 0.666981 | tig0001052:+28001 | Msa1336360:intron |
| GCGCTTAGGATATGTTGATG+TGG | 0.688387 | tig0001052:+28620 | Msa1336360:three_prime_UTR |
| AGATTCGCCGATAATTCCAA+CGG | 0.694653 | tig0001052:+28094 | Msa1336360:CDS |
| TTCGCCGATAATTCCAACGG+TGG | 0.703710 | tig0001052:+28097 | Msa1336360:CDS |
| AGCGAATGACACTAGCACGA+AGG | 0.704631 | tig0001052:+28522 | Msa1336360:CDS |
| TTGAAGTTGATTGATGACTG+TGG | 0.706994 | tig0001052:+28428 | Msa1336360:CDS |
| TTAACTATGACAGAATTCGG+TGG | 0.709225 | tig0001052:+27992 | Msa1336360:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACGTATATATATTTTTTTA+CGG | + | tig0001052:25560-25579 | Msa1336360:intron | 10.0% |
| !!! | TATTACTGTAATTTTATTTT+AGG | + | tig0001052:25865-25884 | Msa1336360:intron | 10.0% |
| !!! | ATTACTGTAATTTTATTTTA+GGG | + | tig0001052:25866-25885 | Msa1336360:intron | 10.0% |
| !!! | TTTTAACAAATTATTTTTTG+AGG | + | tig0001052:26140-26159 | Msa1336360:intron | 10.0% |
| !!! | TTTAACAAATTATTTTTTGA+GGG | + | tig0001052:26141-26160 | Msa1336360:intron | 10.0% |
| !!! | TTATTATACAGTTTTTTTTT+AGG | + | tig0001052:26206-26225 | Msa1336360:intron | 10.0% |
| !!! | TATTATACAGTTTTTTTTTA+GGG | + | tig0001052:26207-26226 | Msa1336360:intron | 10.0% |
| !!! | AAATATATAGTGTTTTTTTA+GGG | - | tig0001052:26282-26301 | None:intergenic | 10.0% |
| !!! | AAAATATATAGTGTTTTTTT+AGG | - | tig0001052:26283-26302 | None:intergenic | 10.0% |
| !! | AATTAATAAATAAGGATATA+AGG | - | tig0001052:26387-26406 | None:intergenic | 10.0% |
| !! | ATATATATACGTATATAAAG+AGG | - | tig0001052:25553-25572 | None:intergenic | 15.0% |
| !!! | TTTTTTACGGATATTTATAT+AGG | + | tig0001052:25573-25592 | Msa1336360:intron | 15.0% |
| !!! | TTACTGTAATTTTATTTTAG+GGG | + | tig0001052:25867-25886 | Msa1336360:intron | 15.0% |
| !!! | AAATAATTTGTTAAAAACGT+GGG | - | tig0001052:26136-26155 | None:intergenic | 15.0% |
| !!! | AAAATAATTTGTTAAAAACG+TGG | - | tig0001052:26137-26156 | None:intergenic | 15.0% |
| !!! | TATATTTTTTTTCAAGTAGT+CGG | + | tig0001052:26295-26314 | Msa1336360:intron | 15.0% |
| !!! | AAATTTGTTATGTTAAATTG+GGG | - | tig0001052:26507-26526 | None:intergenic | 15.0% |
| !!! | GAAATTTGTTATGTTAAATT+GGG | - | tig0001052:26508-26527 | None:intergenic | 15.0% |
| !! | AACAATAGATATATACAATA+GGG | - | tig0001052:26548-26567 | None:intergenic | 15.0% |
| !! | AAACAATAGATATATACAAT+AGG | - | tig0001052:26549-26568 | None:intergenic | 15.0% |
| !! | ATAATTTCACAAATAGAAAT+GGG | - | tig0001052:28171-28190 | None:intergenic | 15.0% |
| !! | AATAATTTCACAAATAGAAA+TGG | - | tig0001052:28172-28191 | None:intergenic | 15.0% |
| !!! | GACTATTTTTTATGTTTATA+TGG | + | tig0001052:28315-28334 | Msa1336360:intron | 15.0% |
| !! | AAAATACTACACCAAAATTA+TGG | + | tig0001052:25525-25544 | Msa1336360:intron | 20.0% |
| !! | TTATATAGGTATATGTTTAG+TGG | + | tig0001052:25587-25606 | Msa1336360:intron | 20.0% |
| !!! | TTTCAAAGGTAATTTTTCTT+TGG | - | tig0001052:25668-25687 | None:intergenic | 20.0% |
| !! | TATCAATTGAGCTAAATTTA+TGG | + | tig0001052:25749-25768 | Msa1336360:intron | 20.0% |
| !!! | GATATTTCAGTTATTTTTTG+TGG | + | tig0001052:26023-26042 | Msa1336360:intron | 20.0% |
| !!! | AATAATTTGTTAAAAACGTG+GGG | - | tig0001052:26135-26154 | None:intergenic | 20.0% |
| !!! | CATTTTAGATGAAATTTGTT+AGG | - | tig0001052:26480-26499 | None:intergenic | 20.0% |
| !!! | GGAAATTTGTTATGTTAAAT+TGG | - | tig0001052:26509-26528 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAACTAATCCG+TGG | + | tig0001052:26692-26711 | Msa1336360:intron | 20.0% |
| !! | AAAACAACTAATTTCAAAGA+AGG | - | tig0001052:27388-27407 | None:intergenic | 20.0% |
| !!! | TGTGTATTTTAAACAAGATT+AGG | - | tig0001052:27503-27522 | None:intergenic | 20.0% |
| !! | TATCTATTCCAAACAAATTA+AGG | + | tig0001052:27677-27696 | Msa1336360:intron | 20.0% |
| !! | ATAAAGAGGATCCATAATTT+TGG | - | tig0001052:25539-25558 | None:intergenic | 25.0% |
| ! | TGAGGGAACAAATTATTATA+CGG | + | tig0001052:26158-26177 | Msa1336360:intron | 25.0% |
| !!! | CATTTTAGAGGGAAAATATT+AGG | - | tig0001052:26432-26451 | None:intergenic | 25.0% |
| !! | ACAAATTTCATCTAAAATGC+AGG | + | tig0001052:26481-26500 | Msa1336360:intron | 25.0% |
| !! | TAATATTCAAGTGTCATTGA+AGG | + | tig0001052:27095-27114 | Msa1336360:intron | 25.0% |
| ! | AATCTAATCTTTGTTAACAC+TGG | + | tig0001052:27271-27290 | Msa1336360:intron | 25.0% |
| ! | AACCCTAAATCTAATTCATT+TGG | + | tig0001052:27306-27325 | Msa1336360:intron | 25.0% |
| ! | ACCCTAAATCTAATTCATTT+GGG | + | tig0001052:27307-27326 | Msa1336360:intron | 25.0% |
| !!! | TATCAGTCGTTGATTTTAAT+TGG | - | tig0001052:27363-27382 | None:intergenic | 25.0% |
| !!! | CAAAGCATTTATTTTAAGAG+CGG | + | tig0001052:27416-27435 | Msa1336360:intron | 25.0% |
| ! | AATACACATAGTAGATGAAA+AGG | + | tig0001052:27515-27534 | Msa1336360:intron | 25.0% |
| ! | AGTAGATGAAAAGGAATAAA+AGG | + | tig0001052:27524-27543 | Msa1336360:intron | 25.0% |
| ! | TACAATACAATTATGCATGT+TGG | + | tig0001052:27551-27570 | Msa1336360:intron | 25.0% |
| ! | ACAATACAATTATGCATGTT+GGG | + | tig0001052:27552-27571 | Msa1336360:intron | 25.0% |
| ! | TAAACAAAATGAGAGAGATA+GGG | - | tig0001052:27707-27726 | None:intergenic | 25.0% |
| !!! | AGTAGATATGGGAATTTTTT+TGG | + | tig0001052:27837-27856 | Msa1336360:CDS | 25.0% |
| !! | ACTTCTGAAAAGATTGAATT+TGG | + | tig0001052:28243-28262 | Msa1336360:CDS | 25.0% |
| !! | TAACAAGTTAGTTTATTTCC+AGG | + | tig0001052:28352-28371 | Msa1336360:intron | 25.0% |
| ! | ATCAATCAACTTCAAAGATT+TGG | - | tig0001052:28423-28442 | None:intergenic | 25.0% |
| !!! | CAATTTTGAAATGAGCATAT+TGG | - | tig0001052:28490-28509 | None:intergenic | 25.0% |
| ! | CAATATGCTCATTTCAAAAT+TGG | + | tig0001052:28488-28507 | Msa1336360:CDS | 25.0% |
| !!! | GTGTTAGTTTTAAGTTTTTG+TGG | + | tig0001052:28669-28688 | Msa1336360:three_prime_UTR | 25.0% |
| !!! | TTAGTTTTAAGTTTTTGTGG+TGG | + | tig0001052:28672-28691 | Msa1336360:three_prime_UTR | 25.0% |
| ! | CAAACACTTCGTTAAATTAA+AGG | - | tig0001052:28808-28827 | None:intergenic | 25.0% |
| !! | ATTTAACGAAGTGTTTGTAT+TGG | + | tig0001052:28811-28830 | Msa1336360:three_prime_UTR | 25.0% |
| GCTAGAAATTCTCTTTATCA+AGG | + | tig0001052:26317-26336 | Msa1336360:intron | 30.0% | |
| TCTTTATCAAGGAGAATAAG+TGG | + | tig0001052:26328-26347 | Msa1336360:intron | 30.0% | |
| CTTTATCAAGGAGAATAAGT+GGG | + | tig0001052:26329-26348 | Msa1336360:intron | 30.0% | |
| TTTATCAAGGAGAATAAGTG+GGG | + | tig0001052:26330-26349 | Msa1336360:intron | 30.0% | |
| TAAGGATATAAGGATATGCA+GGG | - | tig0001052:26377-26396 | None:intergenic | 30.0% | |
| ATAAGGATATAAGGATATGC+AGG | - | tig0001052:26378-26397 | None:intergenic | 30.0% | |
| !! | TTTTTGAGAGACACAGTTTA+GGG | - | tig0001052:26675-26694 | None:intergenic | 30.0% |
| !!! | TTTTTTGAGAGACACAGTTT+AGG | - | tig0001052:26676-26695 | None:intergenic | 30.0% |
| !!! | TTATTTTGAAGATGTGTGCT+TGG | - | tig0001052:26738-26757 | None:intergenic | 30.0% |
| ! | ACGGGTTAAAGATTATTCAT+TGG | + | tig0001052:27194-27213 | Msa1336360:intron | 30.0% |
| GCCCAAATGAATTAGATTTA+GGG | - | tig0001052:27311-27330 | None:intergenic | 30.0% | |
| TGTATTGTTCGCTATACATT+CGG | - | tig0001052:27468-27487 | None:intergenic | 30.0% | |
| TAAACAAGATTAGGATCCAA+TGG | - | tig0001052:27494-27513 | None:intergenic | 30.0% | |
| CTAAACAAAATGAGAGAGAT+AGG | - | tig0001052:27708-27727 | None:intergenic | 30.0% | |
| !!! | AGATATGGGAATTTTTTTGG+TGG | + | tig0001052:27840-27859 | Msa1336360:CDS | 30.0% |
| CAAAAGTAGAGAATGAAAGA+TGG | + | tig0001052:27953-27972 | Msa1336360:intron | 30.0% | |
| GACTTAACTATGACAGAATT+CGG | + | tig0001052:27989-28008 | Msa1336360:intron | 30.0% | |
| !!! | GAGCTTTGAATTTTTCTACA+AGG | + | tig0001052:28212-28231 | Msa1336360:intron | 30.0% |
| CTGAAAAGATTGAATTTGGT+TGG | + | tig0001052:28247-28266 | Msa1336360:CDS | 30.0% | |
| AAAGATTGAATTTGGTTGGT+TGG | + | tig0001052:28251-28270 | Msa1336360:CDS | 30.0% | |
| TATGCTCATTTCAAAATTGG+CGG | + | tig0001052:28491-28510 | Msa1336360:CDS | 30.0% | |
| CAATAAAAAGAGCGGAAAGA+CGG | + | tig0001052:25467-25486 | Msa1336360:intron | 35.0% | |
| AATAAAAAGAGCGGAAAGAC+GGG | + | tig0001052:25468-25487 | Msa1336360:intron | 35.0% | |
| TATTCCAACTAGCGTAAAGA+CGG | - | tig0001052:25505-25524 | None:intergenic | 35.0% | |
| ! | TACCTTTGAAAATGAGAGAG+CGG | + | tig0001052:25677-25696 | Msa1336360:intron | 35.0% |
| ! | TTTTGTGGATACAGAGAGTT+CGG | + | tig0001052:26038-26057 | Msa1336360:intron | 35.0% |
| ACGTTTGGAAATTTGGATTG+AGG | + | tig0001052:26068-26087 | Msa1336360:intron | 35.0% | |
| TGTTCTCTGTGGCATATATT+AGG | - | tig0001052:26094-26113 | None:intergenic | 35.0% | |
| AATATATGCCACAGAGAACA+CGG | + | tig0001052:26094-26113 | Msa1336360:intron | 35.0% | |
| ! | ATTTGTTAAAAACGTGGGGT+GGG | - | tig0001052:26131-26150 | None:intergenic | 35.0% |
| !! | AATTTGTTAAAAACGTGGGG+TGG | - | tig0001052:26132-26151 | None:intergenic | 35.0% |
| ! | ACCTAATGCAGCATTTTAGA+GGG | - | tig0001052:26443-26462 | None:intergenic | 35.0% |
| ! | AACCTAATGCAGCATTTTAG+AGG | - | tig0001052:26444-26463 | None:intergenic | 35.0% |
| CTGAGTTTGCATGGAAATTA+GGG | - | tig0001052:26612-26631 | None:intergenic | 35.0% | |
| TATATATAGCCGAGTTTGCA+TGG | - | tig0001052:26647-26666 | None:intergenic | 35.0% | |
| AAGAGCTGTGTAATTTACCA+CGG | - | tig0001052:26712-26731 | None:intergenic | 35.0% | |
| TCTTTAACCCGTAAGATCAT+GGG | - | tig0001052:27186-27205 | None:intergenic | 35.0% | |
| ATCTTTAACCCGTAAGATCA+TGG | - | tig0001052:27187-27206 | None:intergenic | 35.0% | |
| CGCCCAAATGAATTAGATTT+AGG | - | tig0001052:27312-27331 | None:intergenic | 35.0% | |
| AATCAACGATCCAAATGCTT+TGG | - | tig0001052:27335-27354 | None:intergenic | 35.0% | |
| GTATTGTTCGCTATACATTC+GGG | - | tig0001052:27467-27486 | None:intergenic | 35.0% | |
| AGAAAGAGATGTGTATTGAG+CGG | - | tig0001052:27653-27672 | None:intergenic | 35.0% | |
| !!! | ATGGGAATTTTTTTGGTGGT+AGG | + | tig0001052:27844-27863 | Msa1336360:CDS | 35.0% |
| TTAACTATGACAGAATTCGG+TGG | + | tig0001052:27992-28011 | Msa1336360:intron | 35.0% | |
| !!! | AGTGGAACAAAGGTTTTGAA+TGG | + | tig0001052:28040-28059 | Msa1336360:CDS | 35.0% |
| ! | AGGTTTTTATGAGATGACGT+TGG | + | tig0001052:28388-28407 | Msa1336360:CDS | 35.0% |
| TTTATGAGATGACGTTGGAT+AGG | + | tig0001052:28393-28412 | Msa1336360:CDS | 35.0% | |
| ! | TTGAAGTTGATTGATGACTG+TGG | + | tig0001052:28428-28447 | Msa1336360:CDS | 35.0% |
| ! | TTGATGACTGTGGTAACATA+TGG | + | tig0001052:28438-28457 | Msa1336360:CDS | 35.0% |
| TCATCAAGAATTGTGTATCG+TGG | + | tig0001052:28547-28566 | Msa1336360:CDS | 35.0% | |
| !! | TTGATGTGGTGATGGAATAA+GGG | + | tig0001052:28634-28653 | Msa1336360:three_prime_UTR | 35.0% |
| ACATCTCAAAAACGCCATAT+AGG | - | tig0001052:28749-28768 | None:intergenic | 35.0% | |
| ATTCCAACTAGCGTAAAGAC+GGG | - | tig0001052:25504-25523 | None:intergenic | 40.0% | |
| ! | ACCTTTGAAAATGAGAGAGC+GGG | + | tig0001052:25678-25697 | Msa1336360:intron | 40.0% |
| AGTTCGGACGTTTGGAAATT+TGG | + | tig0001052:26061-26080 | Msa1336360:intron | 40.0% | |
| ATATATGCCACAGAGAACAC+GGG | + | tig0001052:26095-26114 | Msa1336360:intron | 40.0% | |
| TTTGTTAAAAACGTGGGGTG+GGG | - | tig0001052:26130-26149 | None:intergenic | 40.0% | |
| !! | TCCCTCTAAAATGCTGCATT+AGG | + | tig0001052:26439-26458 | Msa1336360:intron | 40.0% |
| ! | TAGGGATTGCTGCATTTTAG+AGG | - | tig0001052:26530-26549 | None:intergenic | 40.0% |
| GCTGAGTTTGCATGGAAATT+AGG | - | tig0001052:26613-26632 | None:intergenic | 40.0% | |
| CCGAGTTTGCATGGAAATTA+GGG | - | tig0001052:26638-26657 | None:intergenic | 40.0% | |
| CCCTAATTTCCATGCAAACT+CGG | + | tig0001052:26609-26628 | Msa1336360:intron | 40.0% | |
| TTGATCGACCCATGATCTTA+CGG | + | tig0001052:27175-27194 | Msa1336360:intron | 40.0% | |
| TGTTAACACTGGAGTCTCTT+TGG | + | tig0001052:27282-27301 | Msa1336360:intron | 40.0% | |
| !! | AGGGCAAGCCTTAATTTGTT+TGG | - | tig0001052:27688-27707 | None:intergenic | 40.0% |
| ! | CTTCTGGATTCCAATGGTTT+TGG | + | tig0001052:27796-27815 | Msa1336360:CDS | 40.0% |
| !!! | GGAATTTTTTTGGTGGTAGG+TGG | + | tig0001052:27847-27866 | Msa1336360:CDS | 40.0% |
| !! | TTTTTGGTGGTAGGTGGTTA+CGG | + | tig0001052:27853-27872 | Msa1336360:CDS | 40.0% |
| AGAATGAAAGATGGTGCATG+AGG | + | tig0001052:27962-27981 | Msa1336360:intron | 40.0% | |
| ! | ATGACAGAATTCGGTGGTTA+CGG | + | tig0001052:27998-28017 | Msa1336360:intron | 40.0% |
| CAAAACCTTTGTTCCACTTC+TGG | - | tig0001052:28038-28057 | None:intergenic | 40.0% | |
| !!! | GGAACAAAGGTTTTGAATGG+TGG | + | tig0001052:28043-28062 | Msa1336360:CDS | 40.0% |
| !! | TTTGAATGGTGGCTTTGATG+AGG | + | tig0001052:28054-28073 | Msa1336360:CDS | 40.0% |
| AGATTCGCCGATAATTCCAA+CGG | + | tig0001052:28094-28113 | Msa1336360:CDS | 40.0% | |
| CATACCACCGTTGGAATTAT+CGG | - | tig0001052:28104-28123 | None:intergenic | 40.0% | |
| TAATTCCAACGGTGGTATGA+AGG | + | tig0001052:28105-28124 | Msa1336360:CDS | 40.0% | |
| ! | TTCCAGGAACTTGCTTACAT+AGG | + | tig0001052:28368-28387 | Msa1336360:intron | 40.0% |
| AACCTATGTAAGCAAGTTCC+TGG | - | tig0001052:28373-28392 | None:intergenic | 40.0% | |
| ATTTCAAAATTGGCGGTGGT+TGG | + | tig0001052:28498-28517 | Msa1336360:CDS | 40.0% | |
| CAAGAATTGTGTATCGTGGT+TGG | + | tig0001052:28551-28570 | Msa1336360:CDS | 40.0% | |
| !!! | TTTTAGAGTGATTCGCGCTT+AGG | + | tig0001052:28606-28625 | Msa1336360:exon | 40.0% |
| AGGATATGTTGATGTGGTGA+TGG | + | tig0001052:28626-28645 | Msa1336360:three_prime_UTR | 40.0% | |
| !! | GTTGATGTGGTGATGGAATA+AGG | + | tig0001052:28633-28652 | Msa1336360:three_prime_UTR | 40.0% |
| !! | TGATGTGGTGATGGAATAAG+GGG | + | tig0001052:28635-28654 | Msa1336360:three_prime_UTR | 40.0% |
| ! | CGAAGTGTTTGTATTGGATG+TGG | + | tig0001052:28817-28836 | Msa1336360:three_prime_UTR | 40.0% |
| CGTCAGCGCAATAAAAAGAG+CGG | + | tig0001052:25459-25478 | Msa1336360:intron | 45.0% | |
| ! | CCTTTGAAAATGAGAGAGCG+GGG | + | tig0001052:25679-25698 | Msa1336360:intron | 45.0% |
| GATACAGAGAGTTCGGAGTT+CGG | + | tig0001052:26045-26064 | Msa1336360:intron | 45.0% | |
| TTAGGGTAGCTGAGTTTGCA+TGG | - | tig0001052:26621-26640 | None:intergenic | 45.0% | |
| GCCGAGTTTGCATGGAAATT+AGG | - | tig0001052:26639-26658 | None:intergenic | 45.0% | |
| TGATCGACCCATGATCTTAC+GGG | + | tig0001052:27176-27195 | Msa1336360:intron | 45.0% | |
| AGCGAACAATACAGAGCCAT+TGG | + | tig0001052:27475-27494 | Msa1336360:intron | 45.0% | |
| GACTAATGCTAGATATCGCG+AGG | - | tig0001052:27597-27616 | None:intergenic | 45.0% | |
| AGCTATTACACGCAGAGAGA+GGG | - | tig0001052:27751-27770 | None:intergenic | 45.0% | |
| AAGCTATTACACGCAGAGAG+AGG | - | tig0001052:27752-27771 | None:intergenic | 45.0% | |
| AGCTTCTTCTTCATCGCTTC+TGG | + | tig0001052:27780-27799 | Msa1336360:CDS | 45.0% | |
| TCATCGCTTCTGGATTCCAA+TGG | + | tig0001052:27790-27809 | Msa1336360:CDS | 45.0% | |
| !!! | CTGGATTCCAATGGTTTTGG+AGG | + | tig0001052:27799-27818 | Msa1336360:CDS | 45.0% |
| !!! | TTCCAATGGTTTTGGAGGTG+CGG | + | tig0001052:27804-27823 | Msa1336360:CDS | 45.0% |
| ! | GCAGTGACGGAAGTAGATAT+GGG | + | tig0001052:27826-27845 | Msa1336360:CDS | 45.0% |
| !! | TTTTGGTGGTAGGTGGTTAC+GGG | + | tig0001052:27854-27873 | Msa1336360:CDS | 45.0% |
| ATCTGCCATAGTTCCACTTC+CGG | - | tig0001052:27893-27912 | None:intergenic | 45.0% | |
| GTGGAACTATGGCAGATAGT+CGG | + | tig0001052:27896-27915 | Msa1336360:intron | 45.0% | |
| AGGTCATGGTGTGACTAAAC+AGG | + | tig0001052:28125-28144 | Msa1336360:intron | 45.0% | |
| AGGAACTCAGCAACTGTTGA+TGG | + | tig0001052:28145-28164 | Msa1336360:intron | 45.0% | |
| ATGAGATGACGTTGGATAGG+AGG | + | tig0001052:28396-28415 | Msa1336360:CDS | 45.0% | |
| GCTCATTTCAAAATTGGCGG+TGG | + | tig0001052:28494-28513 | Msa1336360:CDS | 45.0% | |
| AGTCTCATTTCTCCAGCTTC+CGG | - | tig0001052:28581-28600 | None:intergenic | 45.0% | |
| GCGCTTAGGATATGTTGATG+TGG | + | tig0001052:28620-28639 | Msa1336360:three_prime_UTR | 45.0% | |
| GGAATAAGGGGTTGGAAAAG+AGG | + | tig0001052:28647-28666 | Msa1336360:three_prime_UTR | 45.0% | |
| !! | TCCAACTTGCTGCTCCTATA+TGG | + | tig0001052:28732-28751 | Msa1336360:three_prime_UTR | 45.0% |
| !! | AATATATCTATAATTATTTA+AGG | - | tig0001052:25916-25935 | None:intergenic | 5.0% |
| !!! | AAAAAATTAATAACTTTTTT+AGG | - | tig0001052:25953-25972 | None:intergenic | 5.0% |
| !!! | AAAAAGTTATTAATTTTTTA+TGG | + | tig0001052:25954-25973 | Msa1336360:intron | 5.0% |
| !! | TCTAATAAAATTAATAAATA+AGG | - | tig0001052:26395-26414 | None:intergenic | 5.0% |
| GTACCCGTCTTTACGCTAGT+TGG | + | tig0001052:25498-25517 | Msa1336360:intron | 50.0% | |
| ! | CCCCGCTCTCTCATTTTCAA+AGG | - | tig0001052:25682-25701 | None:intergenic | 50.0% |
| AATTCCTCCCGTGTTCTCTG+TGG | - | tig0001052:26105-26124 | None:intergenic | 50.0% | |
| ! | AGGAGAATAAGTGGGGTGTC+CGG | + | tig0001052:26337-26356 | Msa1336360:intron | 50.0% |
| ! | CATTTGGGCGCCAAAGCATT+TGG | + | tig0001052:27322-27341 | Msa1336360:intron | 50.0% |
| GAGCGGTGTGTACTTGTCAT+TGG | - | tig0001052:27636-27655 | None:intergenic | 50.0% | |
| TATTACACGCAGAGAGAGGG+AGG | - | tig0001052:27748-27767 | None:intergenic | 50.0% | |
| ! | GGCAGTGACGGAAGTAGATA+TGG | + | tig0001052:27825-27844 | Msa1336360:CDS | 50.0% |
| ! | TTTGGTGGTAGGTGGTTACG+GGG | + | tig0001052:27855-27874 | Msa1336360:CDS | 50.0% |
| GAACTATGGCAGATAGTCGG+TGG | + | tig0001052:27899-27918 | Msa1336360:intron | 50.0% | |
| TGGCAGATAGTCGGTGGTTA+CGG | + | tig0001052:27905-27924 | Msa1336360:intron | 50.0% | |
| ATAGTCGGTGGTTACGGATG+TGG | + | tig0001052:27911-27930 | Msa1336360:intron | 50.0% | |
| ! | ACAGAATTCGGTGGTTACGG+AGG | + | tig0001052:28001-28020 | Msa1336360:intron | 50.0% |
| CAGTGCCAGAAGTGGAACAA+AGG | + | tig0001052:28030-28049 | Msa1336360:CDS | 50.0% | |
| TTCGCCGATAATTCCAACGG+TGG | + | tig0001052:28097-28116 | Msa1336360:CDS | 50.0% | |
| CATGACCTTCATACCACCGT+TGG | - | tig0001052:28113-28132 | None:intergenic | 50.0% | |
| CAACGGTGGTATGAAGGTCA+TGG | + | tig0001052:28111-28130 | Msa1336360:intron | 50.0% | |
| AGCGAATGACACTAGCACGA+AGG | + | tig0001052:28522-28541 | Msa1336360:CDS | 50.0% | |
| !! | GTGGTGATGGAATAAGGGGT+TGG | + | tig0001052:28639-28658 | Msa1336360:three_prime_UTR | 50.0% |
| GCCATATAGGAGCAGCAAGT+TGG | - | tig0001052:28736-28755 | None:intergenic | 50.0% | |
| GAGTTCGGAGTTCGGACGTT+TGG | + | tig0001052:26053-26072 | Msa1336360:intron | 55.0% | |
| TATGCCACAGAGAACACGGG+AGG | + | tig0001052:26098-26117 | Msa1336360:intron | 55.0% | |
| ! | GGAGAATAAGTGGGGTGTCC+GGG | + | tig0001052:26338-26357 | Msa1336360:intron | 55.0% |
| ! | GAGAATAAGTGGGGTGTCCG+GGG | + | tig0001052:26339-26358 | Msa1336360:intron | 55.0% |
| TGCCGCACCTCCAAAACCAT+TGG | - | tig0001052:27809-27828 | None:intergenic | 55.0% | |
| !! | TTTTGGAGGTGCGGCAGTGA+CGG | + | tig0001052:27813-27832 | Msa1336360:CDS | 55.0% |
| ! | TTGGTGGTAGGTGGTTACGG+GGG | + | tig0001052:27856-27875 | Msa1336360:CDS | 55.0% |
| ! | TGGTGCCGGAAGTGGAACTA+TGG | + | tig0001052:27885-27904 | Msa1336360:CDS | 55.0% |
| TCGGTGGTTACGGATGTGGT+CGG | + | tig0001052:27915-27934 | Msa1336360:intron | 55.0% | |
| ACGGATGTGGTCGGTGGTTA+CGG | + | tig0001052:27924-27943 | Msa1336360:intron | 55.0% | |
| ! | GAATTCGGTGGTTACGGAGG+TGG | + | tig0001052:28004-28023 | Msa1336360:intron | 55.0% |
| ! | GTGTATCGTGGTTGGTGCAC+CGG | + | tig0001052:28559-28578 | Msa1336360:CDS | 55.0% |
| ATGAGAGAGCGGGGTGATCG+AGG | + | tig0001052:25688-25707 | Msa1336360:intron | 60.0% | |
| CAGGGTCAGAGTTCGAACCC+CGG | - | tig0001052:26359-26378 | None:intergenic | 60.0% | |
| ! | TTTTGACCCGTGCGACGCAC+GGG | - | tig0001052:27241-27260 | None:intergenic | 60.0% |
| ! | CTTTTGACCCGTGCGACGCA+CGG | - | tig0001052:27242-27261 | None:intergenic | 60.0% |
| GTGGTTACGGATGTGGTCGG+TGG | + | tig0001052:27918-27937 | Msa1336360:intron | 60.0% | |
| GGTGGTGACAGTGCCAGAAG+TGG | + | tig0001052:28022-28041 | Msa1336360:CDS | 60.0% | |
| !! | GGTGGCTTTGATGAGGCCGA+CGG | + | tig0001052:28061-28080 | Msa1336360:CDS | 60.0% |
| GAATCTCGCCACTCCACCGT+CGG | - | tig0001052:28080-28099 | None:intergenic | 60.0% | |
| GACAAGACCCGTGCGTCGCA+CGG | + | tig0001052:27231-27250 | Msa1336360:intron | 65.0% | |
| ACAAGACCCGTGCGTCGCAC+GGG | + | tig0001052:27232-27251 | Msa1336360:intron | 65.0% | |
| GTGGTAGGTGGTTACGGGGG+TGG | + | tig0001052:27859-27878 | Msa1336360:CDS | 65.0% | |
| GGTGGTTACGGGGGTGGTGA+TGG | + | tig0001052:27865-27884 | Msa1336360:CDS | 65.0% | |
| !! | TACGGGGGTGGTGATGGTGC+CGG | + | tig0001052:27871-27890 | Msa1336360:CDS | 65.0% |
| !! | GGTGGTGATGGTGCCGGAAG+TGG | + | tig0001052:27877-27896 | Msa1336360:CDS | 65.0% |
| ! | GGCTTTGATGAGGCCGACGG+TGG | + | tig0001052:28064-28083 | Msa1336360:CDS | 65.0% |
| TGATGAGGCCGACGGTGGAG+TGG | + | tig0001052:28069-28088 | Msa1336360:CDS | 65.0% | |
| ! | GTGGTTGGTGCACCGGAAGC+TGG | + | tig0001052:28566-28585 | Msa1336360:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0001052 | gene | 25348 | 28849 | 25348 | ID=Msa1336360;Name=Msa1336360 |
| tig0001052 | mRNA | 25348 | 28849 | 25348 | ID=Msa1336360-mRNA-1;Parent=Msa1336360;Name=Msa1336360-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.25|0.2|0.8|1|1|5|233|183 |
| tig0001052 | exon | 25348 | 25350 | 25348 | ID=Msa1336360-mRNA-1:exon:687;Parent=Msa1336360-mRNA-1 |
| tig0001052 | exon | 27769 | 27913 | 27769 | ID=Msa1336360-mRNA-1:exon:688;Parent=Msa1336360-mRNA-1 |
| tig0001052 | exon | 28005 | 28126 | 28005 | ID=Msa1336360-mRNA-1:exon:689;Parent=Msa1336360-mRNA-1 |
| tig0001052 | exon | 28234 | 28272 | 28234 | ID=Msa1336360-mRNA-1:exon:690;Parent=Msa1336360-mRNA-1 |
| tig0001052 | exon | 28374 | 28849 | 28374 | ID=Msa1336360-mRNA-1:exon:691;Parent=Msa1336360-mRNA-1 |
| tig0001052 | CDS | 25348 | 25350 | 25348 | ID=Msa1336360-mRNA-1:cds;Parent=Msa1336360-mRNA-1 |
| tig0001052 | CDS | 27769 | 27913 | 27769 | ID=Msa1336360-mRNA-1:cds;Parent=Msa1336360-mRNA-1 |
| tig0001052 | CDS | 28005 | 28126 | 28005 | ID=Msa1336360-mRNA-1:cds;Parent=Msa1336360-mRNA-1 |
| tig0001052 | CDS | 28234 | 28272 | 28234 | ID=Msa1336360-mRNA-1:cds;Parent=Msa1336360-mRNA-1 |
| tig0001052 | CDS | 28374 | 28616 | 28374 | ID=Msa1336360-mRNA-1:cds;Parent=Msa1336360-mRNA-1 |
| tig0001052 | three_prime_UTR | 28617 | 28849 | 28617 | ID=Msa1336360-mRNA-1:three_prime_utr;Parent=Msa1336360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
