AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0201130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0201130 MtrunA17_Chr2g0297281 97.971 690 14 0 1 690 61 750 0.0 1364
Msa0201130 MtrunA17_Chr4g0052411 85.447 694 97 3 1 690 1 694 0.0 1179
Msa0201130 MtrunA17_Chr7g0217421 84.615 364 56 0 216 579 29 392 0.0 649
Msa0201130 MtrunA17_Chr3g0143721 52.144 583 262 9 93 668 124 696 0.0 565
Msa0201130 MtrunA17_Chr7g0260601 46.185 498 243 12 201 683 214 701 6.66e-139 423
Msa0201130 MtrunA17_Chr1g0158881 49.666 449 205 4 227 673 330 759 1.74e-136 419
Msa0201130 MtrunA17_Chr6g0476861 43.403 523 258 10 155 668 143 636 7.56e-135 412
Msa0201130 MtrunA17_Chr4g0031821 45.833 480 240 11 208 678 301 769 6.60e-134 414
Msa0201130 MtrunA17_Chr8g0362771 46.835 474 223 8 206 670 218 671 1.20e-130 402
Msa0201130 MtrunA17_Chr3g0135721 46.522 460 223 6 224 677 222 664 2.17e-129 399
Msa0201130 MtrunA17_Chr7g0248361 46.018 452 223 9 226 668 192 631 3.41e-128 394
Msa0201130 MtrunA17_Chr3g0135761 46.827 457 218 7 220 670 218 655 1.79e-126 391
Msa0201130 MtrunA17_Chr5g0432631 43.053 511 254 10 167 670 183 663 5.44e-124 389
Msa0201130 MtrunA17_Chr5g0429571 49.330 448 214 9 212 647 299 745 3.95e-123 385
Msa0201130 MtrunA17_Chr3g0104211 54.090 379 162 8 226 593 304 681 4.59e-121 379
Msa0201130 MtrunA17_Chr3g0094871 43.624 447 227 8 226 668 11 436 8.67e-121 367
Msa0201130 MtrunA17_Chr5g0432641 42.950 461 241 8 216 669 179 624 2.86e-114 358
Msa0201130 MtrunA17_Chr8g0388371 37.248 545 290 12 184 686 359 893 1.52e-100 328
Msa0201130 MtrunA17_Chr1g0168321 41.481 405 187 10 207 601 144 508 2.48e-93 298
Msa0201130 MtrunA17_Chr2g0331161 40.435 460 241 8 220 669 409 845 4.18e-91 302
Msa0201130 MtrunA17_Chr6g0456351 52.518 278 126 3 212 486 303 577 1.18e-84 278
Msa0201130 MtrunA17_Chr3g0129971 38.697 491 267 10 207 681 276 748 5.54e-82 277
Msa0201130 MtrunA17_Chr8g0357301 35.590 458 251 11 243 663 487 937 1.48e-71 251
Msa0201130 MtrunA17_Chr5g0432391 35.123 447 209 9 224 661 50 424 1.95e-66 225
Msa0201130 MtrunA17_Chr3g0135781 58.919 185 66 3 206 387 36 213 8.84e-65 213
Msa0201130 MtrunA17_Chr8g0345461 40.625 256 151 1 220 474 159 414 7.56e-61 210
Msa0201130 MtrunA17_Chr1g0192151 40.152 264 147 2 228 490 169 422 7.72e-60 207
Msa0201130 MtrunA17_Chr4g0014731 40.152 264 147 2 228 490 170 423 1.12e-59 206
Msa0201130 MtrunA17_Chr4g0050561 41.463 246 142 2 227 470 157 402 1.43e-59 206
Msa0201130 MtrunA17_Chr1g0200081 40.625 256 150 2 220 474 169 423 6.68e-59 205
Msa0201130 MtrunA17_Chr1g0182711 41.633 245 142 1 227 470 189 433 3.64e-56 197
Msa0201130 MtrunA17_Chr7g0262801 41.633 245 142 1 227 470 188 432 1.11e-55 196
Msa0201130 MtrunA17_Chr2g0327121 46.696 227 117 3 226 451 207 430 1.02e-53 198
Msa0201130 MtrunA17_Chr2g0327121 42.424 231 130 2 222 451 478 706 5.45e-53 196
Msa0201130 MtrunA17_Chr7g0264521 42.424 231 130 2 222 451 477 705 1.38e-53 197
Msa0201130 MtrunA17_Chr7g0264521 45.374 227 120 3 226 451 206 429 4.35e-52 193
Msa0201130 MtrunA17_Chr3g0145011 40.789 228 134 1 225 451 138 365 3.82e-53 188
Msa0201130 MtrunA17_Chr3g0141901 40.789 228 134 1 225 451 135 362 4.77e-53 188
Msa0201130 MtrunA17_Chr7g0255651 44.493 227 125 1 226 451 282 508 9.59e-53 191
Msa0201130 MtrunA17_Chr7g0255651 31.081 222 139 5 250 464 38 252 4.38e-21 97.8
Msa0201130 MtrunA17_Chr1g0180791 45.815 227 119 3 226 451 205 428 1.24e-52 195
Msa0201130 MtrunA17_Chr1g0180791 42.424 231 130 2 222 451 476 704 1.82e-52 194
Msa0201130 MtrunA17_Chr3g0108321 47.568 185 96 1 226 409 159 343 1.92e-50 180
Msa0201130 MtrunA17_Chr2g0277831 45.532 235 120 5 218 449 527 756 3.93e-50 187
Msa0201130 MtrunA17_Chr2g0277831 43.922 255 129 4 205 452 223 470 2.66e-46 176
Msa0201130 MtrunA17_Chr7g0255721 42.667 225 127 2 226 449 685 908 6.77e-48 182
Msa0201130 MtrunA17_Chr7g0255721 41.589 214 121 2 257 469 416 626 3.21e-35 143
Msa0201130 MtrunA17_Chr7g0255691 44.493 227 125 1 226 451 286 512 2.20e-47 176
Msa0201130 MtrunA17_Chr7g0255691 34.661 251 137 8 229 465 20 257 7.94e-27 115
Msa0201130 MtrunA17_Chr7g0255901 39.695 262 148 7 222 477 637 894 1.06e-45 175
Msa0201130 MtrunA17_Chr7g0255641 40.000 225 133 2 226 449 658 881 1.58e-45 174
Msa0201130 MtrunA17_Chr7g0255641 40.201 199 113 4 264 461 432 625 1.90e-31 131
Msa0201130 MtrunA17_Chr4g0043381 41.256 223 127 2 228 449 839 1058 1.74e-44 172
Msa0201130 MtrunA17_Chr3g0135791 36.078 255 147 4 420 670 9 251 3.11e-43 158
Msa0201130 MtrunA17_Chr7g0217411 57.759 116 48 1 569 683 6 121 2.53e-42 149
Msa0201130 MtrunA17_Chr1g0190401 28.313 498 285 11 226 660 677 1165 8.78e-42 164
Msa0201130 MtrunA17_Chr2g0321241 42.241 232 122 8 212 439 120 343 1.09e-40 154
Msa0201130 MtrunA17_Chr2g0327231 45.455 165 87 2 222 385 344 506 1.31e-40 155
Msa0201130 MtrunA17_Chr2g0327231 39.560 91 52 1 226 316 153 240 3.18e-14 75.9
Msa0201130 MtrunA17_Chr3g0086411 36.782 261 142 5 222 463 211 467 1.71e-40 155
Msa0201130 MtrunA17_Chr3g0086411 43.421 152 68 4 313 452 7 152 2.77e-23 103
Msa0201130 MtrunA17_Chr3g0086401 37.698 252 127 6 222 449 381 626 1.83e-40 157
Msa0201130 MtrunA17_Chr3g0086401 40.586 239 119 7 228 452 94 323 6.80e-40 156
Msa0201130 MtrunA17_Chr4g0004121 37.302 252 144 5 220 462 236 482 2.57e-39 152
Msa0201130 MtrunA17_Chr4g0026631 41.379 232 124 8 212 439 115 338 3.01e-39 150
Msa0201130 MtrunA17_Chr8g0387641 39.732 224 128 5 226 446 521 740 8.99e-39 154
Msa0201130 MtrunA17_Chr4g0038101 38.865 229 126 6 225 446 720 941 3.06e-37 149
Msa0201130 MtrunA17_Chr6g0462581 41.778 225 123 6 225 446 499 718 3.71e-37 149
Msa0201130 MtrunA17_Chr5g0397121 39.556 225 129 5 225 446 512 732 5.87e-37 148
Msa0201130 MtrunA17_Chr1g0195741 40.529 227 125 6 225 446 937 1158 7.70e-37 148
Msa0201130 MtrunA17_Chr4g0033451 37.121 264 142 7 200 452 360 610 1.11e-36 148
Msa0201130 MtrunA17_Chr3g0116131 39.485 233 130 7 220 446 895 1122 5.16e-36 145
Msa0201130 MtrunA17_Chr6g0459561 38.136 236 129 8 220 447 376 602 1.01e-35 143
Msa0201130 MtrunA17_Chr1g0202371 38.261 230 124 7 225 446 396 615 1.75e-35 143
Msa0201130 MtrunA17_Chr1g0195731 38.326 227 130 6 225 446 933 1154 6.18e-35 142
Msa0201130 MtrunA17_Chr1g0202381 39.556 225 127 6 226 446 468 687 6.58e-35 141
Msa0201130 MtrunA17_Chr1g0204031 39.035 228 130 6 226 449 557 779 1.57e-34 140
Msa0201130 MtrunA17_Chr3g0127431 36.481 233 133 6 226 451 84 308 3.37e-33 132
Msa0201130 MtrunA17_Chr4g0047411 38.140 215 119 4 251 452 202 415 3.81e-33 135
Msa0201130 MtrunA17_Chr4g0052271 37.131 237 133 8 222 452 117 343 7.82e-33 131
Msa0201130 MtrunA17_Chr6g0459541 35.019 257 133 9 220 447 36 287 5.82e-32 127
Msa0201130 MtrunA17_Chr2g0316851 35.865 237 134 5 228 453 596 825 5.82e-32 133
Msa0201130 MtrunA17_Chr7g0246111 36.797 231 136 6 225 451 211 435 1.05e-31 129
Msa0201130 MtrunA17_Chr3g0127401 35.193 233 136 6 226 451 81 305 1.16e-30 124
Msa0201130 MtrunA17_Chr6g0459551 39.378 193 104 7 220 409 96 278 4.71e-26 111
Msa0201130 MtrunA17_Chr7g0217431 51.240 121 56 2 91 209 75 194 1.27e-23 99.0
Msa0201130 MtrunA17_Chr2g0289231 35.678 199 105 7 223 407 294 483 3.27e-23 104
Msa0201130 MtrunA17_Chr3g0135741 37.405 131 81 1 420 549 7 137 1.78e-19 85.5
Msa0201130 MtrunA17_Chr5g0432671 40.000 105 58 2 425 528 2 102 4.50e-17 77.4
Msa0201130 MtrunA17_Chr6g0459531 29.237 236 123 10 220 447 61 260 2.75e-16 80.5
Msa0201130 MtrunA17_Chr4g0062081 43.373 83 45 2 224 304 5 87 1.86e-13 67.0
Msa0201130 MtrunA17_Chr8g0392971 35.052 97 61 2 435 529 51 147 5.59e-13 67.4
Msa0201130 MtrunA17_Chr2g0315971 28.729 181 113 6 223 396 192 363 1.26e-11 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0201130 AT2G30950.4 84.088 685 97 6 1 680 5 682 0.0 1130
Msa0201130 AT2G30950.1 84.088 685 97 6 1 680 1 678 0.0 1129
Msa0201130 AT2G30950.2 84.088 685 97 6 1 680 1 678 0.0 1129
Msa0201130 AT2G30950.3 84.088 685 97 6 1 680 1 678 0.0 1129
Msa0201130 AT1G06430.1 82.994 688 92 6 1 680 1 671 0.0 1115
Msa0201130 AT1G06430.3 82.994 688 92 6 1 680 1 671 0.0 1115
Msa0201130 AT1G06430.2 82.994 688 92 6 1 680 1 671 0.0 1115
Msa0201130 AT5G15250.1 70.015 647 176 7 38 675 34 671 0.0 902
Msa0201130 AT5G15250.2 64.898 490 132 7 38 496 34 514 0.0 594
Msa0201130 AT5G42270.1 53.002 583 257 9 93 668 122 694 0.0 562
Msa0201130 AT1G50250.1 52.226 584 262 9 93 668 132 706 0.0 552
Msa0201130 AT5G53170.1 49.669 453 206 5 219 668 351 784 7.95e-137 421
Msa0201130 AT1G07510.1 47.228 451 221 9 226 670 324 763 3.30e-133 412
Msa0201130 AT2G26140.1 47.807 456 213 5 223 671 221 658 1.58e-131 405
Msa0201130 AT2G29080.1 47.556 450 222 7 226 670 319 759 9.49e-128 398
Msa0201130 AT3G47060.1 44.487 526 257 13 142 647 243 753 5.02e-125 390
Msa0201130 AT5G58870.1 53.298 379 165 8 226 593 326 703 4.54e-119 375
Msa0201130 AT4G23940.1 38.447 528 272 13 190 678 392 905 6.73e-100 328
Msa0201130 AT3G02450.1 49.695 328 146 4 148 473 267 577 1.02e-90 295
Msa0201130 AT3G16290.1 40.260 462 243 8 220 671 401 839 1.84e-89 298
Msa0201130 AT5G64580.1 38.086 491 270 10 207 681 293 765 1.94e-81 276
Msa0201130 AT1G79560.2 33.470 487 267 14 243 680 507 985 1.04e-65 234
Msa0201130 AT1G79560.3 34.136 457 255 12 243 661 507 955 2.26e-65 233
Msa0201130 AT1G79560.1 33.403 476 271 12 243 680 507 974 2.48e-65 233
Msa0201130 AT1G53750.1 40.625 256 151 1 220 474 159 414 1.57e-60 209
Msa0201130 AT3G05530.1 40.530 264 146 2 228 490 170 423 2.94e-60 208
Msa0201130 AT5G19990.2 41.463 246 142 2 227 470 101 346 2.23e-59 204
Msa0201130 AT5G19990.1 41.463 246 142 2 227 470 159 404 3.50e-59 205
Msa0201130 AT5G19990.3 41.463 246 142 2 227 470 159 404 3.50e-59 205
Msa0201130 AT5G20000.1 41.463 246 142 2 227 470 159 404 4.00e-59 205
Msa0201130 AT1G09100.1 39.773 264 148 2 228 490 169 422 1.46e-58 204
Msa0201130 AT1G53780.3 39.844 256 153 1 220 474 330 585 1.10e-56 203
Msa0201130 AT1G53780.1 39.844 256 153 1 220 474 331 586 1.16e-56 203
Msa0201130 AT1G53780.4 39.844 256 153 1 220 474 331 586 1.16e-56 203
Msa0201130 AT5G58290.1 42.678 239 136 1 226 463 152 390 1.50e-56 198
Msa0201130 AT1G53780.2 39.844 256 153 1 220 474 352 607 1.56e-56 203
Msa0201130 AT4G29040.1 40.816 245 144 1 227 470 186 430 6.68e-55 194
Msa0201130 AT2G20140.1 40.816 245 144 1 227 470 186 430 2.10e-54 193
Msa0201130 AT1G45000.1 41.228 228 133 1 225 451 135 362 5.84e-54 191
Msa0201130 AT5G43010.1 40.351 228 135 1 225 451 135 362 1.45e-53 189
Msa0201130 AT3G53230.1 42.424 231 130 2 222 451 476 704 2.08e-53 197
Msa0201130 AT3G53230.1 44.934 227 121 2 226 451 205 428 1.08e-51 192
Msa0201130 AT3G09840.1 42.912 261 143 4 208 467 186 441 6.32e-53 196
Msa0201130 AT3G09840.1 42.672 232 129 3 222 451 475 704 4.95e-49 184
Msa0201130 AT5G03340.1 42.424 231 130 2 222 451 475 703 6.56e-53 196
Msa0201130 AT5G03340.1 42.912 261 143 4 208 467 186 441 9.00e-53 196
Msa0201130 AT3G56690.1 44.444 225 123 2 226 449 721 944 2.27e-50 190
Msa0201130 AT3G56690.1 35.021 237 150 2 217 452 373 606 5.52e-38 152
Msa0201130 AT5G08470.1 43.049 223 123 2 228 449 843 1062 2.70e-45 175
Msa0201130 AT5G08470.3 42.920 226 119 3 228 449 834 1053 3.27e-45 174
Msa0201130 AT3G01610.2 41.833 251 120 6 218 453 222 461 2.37e-44 171
Msa0201130 AT3G01610.2 42.735 234 126 5 218 449 519 746 4.56e-39 155
Msa0201130 AT3G01610.1 41.833 251 120 6 218 453 222 461 2.38e-44 171
Msa0201130 AT3G01610.1 42.735 234 126 5 218 449 519 746 3.48e-39 155
Msa0201130 AT1G03000.1 40.851 235 131 6 222 452 653 883 7.39e-44 170
Msa0201130 AT2G03670.1 41.702 235 135 2 226 458 283 517 9.87e-44 167
Msa0201130 AT2G03670.1 32.283 254 154 5 230 472 23 269 3.48e-30 126
Msa0201130 AT1G05910.1 35.430 302 171 7 200 490 358 646 7.33e-41 161
Msa0201130 AT3G04340.1 26.078 510 307 11 223 670 778 1279 9.30e-39 155
Msa0201130 AT1G64110.2 40.000 225 128 5 225 446 517 737 9.55e-39 154
Msa0201130 AT1G64110.4 40.000 225 128 5 225 446 517 737 9.55e-39 154
Msa0201130 AT1G64110.5 40.000 225 128 5 225 446 515 735 1.04e-38 154
Msa0201130 AT1G64110.3 40.000 225 128 5 225 446 515 735 1.04e-38 154
Msa0201130 AT1G80350.1 38.583 254 138 7 220 462 230 476 1.06e-38 150
Msa0201130 AT1G64110.1 40.000 225 128 5 225 446 512 732 1.08e-38 154
Msa0201130 AT4G28000.1 40.000 225 127 6 225 446 514 733 1.09e-37 150
Msa0201130 AT4G28000.2 40.000 225 127 6 225 446 516 735 1.15e-37 150
Msa0201130 AT4G28000.3 40.000 225 127 6 225 446 516 735 1.17e-37 150
Msa0201130 AT1G50140.3 39.738 229 124 6 225 446 710 931 1.11e-36 148
Msa0201130 AT1G50140.1 39.738 229 124 6 225 446 710 931 1.11e-36 148
Msa0201130 AT1G50140.4 39.738 229 124 6 225 446 710 931 1.11e-36 148
Msa0201130 AT1G50140.2 39.738 229 124 6 225 446 688 909 1.11e-36 148
Msa0201130 AT1G50140.5 39.738 229 124 6 225 446 688 909 1.11e-36 148
Msa0201130 AT2G27600.1 39.655 232 128 8 212 439 117 340 1.47e-36 143
Msa0201130 AT5G52882.1 40.444 225 126 6 225 446 513 732 6.71e-36 145
Msa0201130 AT2G34560.1 36.475 244 144 6 223 461 97 334 9.75e-36 139
Msa0201130 AT4G02480.1 38.865 229 130 6 223 446 957 1180 1.08e-35 145
Msa0201130 AT2G34560.2 36.475 244 144 6 223 461 106 343 1.40e-35 139
Msa0201130 AT3G19740.1 37.751 249 137 7 225 466 700 937 3.46e-35 143
Msa0201130 AT1G02890.1 34.948 289 165 9 223 500 938 1214 1.18e-34 142
Msa0201130 AT3G27120.1 38.136 236 129 8 220 447 394 620 4.62e-34 139
Msa0201130 AT2G45500.4 36.402 239 138 7 225 457 79 309 6.90e-34 133
Msa0201130 AT2G45500.3 36.402 239 138 7 225 457 79 309 6.90e-34 133
Msa0201130 AT3G15120.2 35.714 238 131 6 228 452 728 956 3.93e-33 137
Msa0201130 AT3G15120.1 35.714 238 131 6 228 452 718 946 3.96e-33 137
Msa0201130 AT2G45500.1 36.402 239 138 7 225 457 216 446 5.58e-33 133
Msa0201130 AT2G45500.2 36.402 239 138 7 225 457 212 442 5.88e-33 133
Msa0201130 AT4G04910.1 38.605 215 118 5 251 452 239 452 6.63e-33 135
Msa0201130 AT2G45500.5 36.402 239 138 7 225 457 222 452 6.98e-33 133
Msa0201130 AT4G27680.1 32.117 274 165 9 223 482 78 344 8.12e-32 128
Msa0201130 AT4G24860.1 37.168 226 132 6 226 446 817 1037 4.37e-31 130
Msa0201130 AT4G24860.3 37.168 226 132 6 226 446 815 1035 4.44e-31 130
Msa0201130 AT5G53540.1 35.345 232 137 7 226 451 84 308 5.07e-31 126
Msa0201130 AT4G24860.4 37.168 226 132 6 226 446 790 1010 5.63e-31 130
Msa0201130 AT4G24860.2 37.168 226 132 6 226 446 813 1033 6.77e-31 130
Msa0201130 AT2G03670.2 32.283 254 154 5 230 472 23 269 6.85e-31 126
Msa0201130 AT2G03670.2 41.429 140 80 2 226 363 283 422 4.01e-21 97.1
Msa0201130 AT1G62130.2 35.685 241 131 7 225 461 742 962 1.41e-28 123
Msa0201130 AT1G45000.2 40.288 139 82 1 226 363 136 274 1.42e-28 117
Msa0201130 AT1G62130.1 35.685 241 131 7 225 461 749 969 1.49e-28 122
Msa0201130 AT4G04180.2 32.271 251 148 8 226 462 311 553 1.34e-25 112
Msa0201130 AT4G04180.1 32.271 251 148 8 226 462 316 558 1.47e-25 112
Msa0201130 AT5G08470.2 40.541 148 84 2 228 374 843 987 3.03e-25 112
Msa0201130 AT1G02890.2 31.597 288 148 10 223 500 938 1186 1.10e-23 107
Msa0201130 AT5G17760.1 30.168 179 108 5 227 396 217 387 4.22e-13 72.8
Msa0201130 AT2G18193.1 30.682 176 108 5 227 396 207 374 6.29e-12 68.9
Msa0201130 AT5G17740.1 28.333 180 109 5 227 394 209 380 2.40e-11 67.4

Find 209 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTAGGTTTCTTGAGTATT+TGG 0.138375 2_1:+21961856 Msa0201130:CDS
ATTTGGTTCCATTTGAAATT+TGG 0.159262 2_1:-21962212 None:intergenic
GCTTTCCCTTTAATTGTTAT+TGG 0.165898 2_1:+21962103 Msa0201130:CDS
CCTCCAGAATGTCTTATTCT+AGG 0.183281 2_1:+21961840 Msa0201130:CDS
CCCGGTGGGTCTGGTTTATT+TGG 0.185037 2_1:+21962172 Msa0201130:CDS
TCAAATGTCACTCCAGTATT+TGG 0.213015 2_1:-21962229 None:intergenic
AATCCTCCAATAACAATTAA+AGG 0.232302 2_1:-21962109 None:intergenic
TATTGGTCCTTGGTCACTTA+TGG 0.235513 2_1:+21964154 Msa0201130:CDS
AATAGTGTCTTCCCAGTTCC+TGG 0.254550 2_1:-21962376 None:intergenic
CAAGAAGAATGATGAATAAT+TGG 0.264420 2_1:-21959844 None:intergenic
CAGTTGACGTTCCAGATATT+CGG 0.270918 2_1:+21963059 Msa0201130:CDS
TCAGTCCTTCCCCGAATATC+TGG 0.273320 2_1:-21963070 None:intergenic
GTTGGCTTACCTGCATTATT+AGG 0.287725 2_1:+21961779 Msa0201130:CDS
GTTCCTTCTTAGTGTTAGTT+AGG 0.300840 2_1:+21964553 Msa0201130:three_prime_UTR
TGAATTTCTGAAGGAGTTCT+TGG 0.303769 2_1:-21962000 None:intergenic
GGGTCTGGTTTATTTGGTTT+TGG 0.306496 2_1:+21962178 Msa0201130:CDS
CTTCTTTCACGACGTTCATC+TGG 0.312884 2_1:+21962136 Msa0201130:CDS
GTTGAGATGTTTGTCGGTAT+TGG 0.319704 2_1:+21962460 Msa0201130:CDS
ACGCTTGGCAAGGACGTAAA+TGG 0.320713 2_1:+21961626 Msa0201130:CDS
AAACCTAGAATAAGACATTC+TGG 0.327601 2_1:-21961843 None:intergenic
CAACTCTTTGCAAGAATTGT+TGG 0.330502 2_1:+21963684 Msa0201130:CDS
CCTGAGAGGTTCACTGCTAT+TGG 0.334336 2_1:+21962316 Msa0201130:CDS
CATCATTGGCATGCCTTGTT+GGG 0.343440 2_1:+21961573 Msa0201130:CDS
AGAAAATAGAAGCTACAAAA+AGG 0.344794 2_1:-21964653 None:intergenic
ACATTTGGAATGTCTGATAT+TGG 0.346842 2_1:+21964137 Msa0201130:CDS
TTGCAGATGGTAACCACATT+TGG 0.347051 2_1:+21964122 Msa0201130:intron
TTTCAAATGGAACCAAATAC+TGG 0.348187 2_1:+21962217 Msa0201130:CDS
GAGGCTGTTTCTCCCGAGTT+AGG 0.350546 2_1:+21961935 Msa0201130:CDS
AGGCAGCGAGGCACTGGAAT+TGG 0.354197 2_1:+21962568 Msa0201130:CDS
TTTCTCCCGAGTTAGGTAAT+AGG 0.356316 2_1:+21961942 Msa0201130:CDS
GCATCATTGGCATGCCTTGT+TGG 0.357346 2_1:+21961572 Msa0201130:CDS
CCTATCCATACATACTTGTT+TGG 0.357375 2_1:+21964614 Msa0201130:three_prime_UTR
GTCAAGCTCGGGGTCTTACT+TGG 0.359822 2_1:+21963622 Msa0201130:CDS
TCTTGCAAAGAGTTGTTGTT+TGG 0.362072 2_1:-21963676 None:intergenic
AATAACCAGTTTGGCTAAAC+AGG 0.363637 2_1:+21963788 Msa0201130:CDS
ACCAATCAGGTTTGAAAAGA+AGG 0.366378 2_1:-21962074 None:intergenic
CTCTCCCATCCTCTTTGTTA+AGG 0.367199 2_1:+21960024 Msa0201130:five_prime_UTR
ACGGGAGGTCCCGGTGGGTC+TGG 0.367597 2_1:+21962163 Msa0201130:CDS
AAATTGCATTGAAGCATATA+AGG 0.368891 2_1:+21964291 Msa0201130:CDS
AGATTGATGATTCTATTGAT+AGG 0.371818 2_1:+21963257 Msa0201130:CDS
GATGGATTTGAGGGTAATAC+TGG 0.384174 2_1:+21962643 Msa0201130:CDS
TGTTGTTTGGAGATTAGAGT+TGG 0.391889 2_1:-21963663 None:intergenic
AATACAAGGAGCATTCTCTT+TGG 0.392201 2_1:-21962515 None:intergenic
AAGTTGGGCATGCCATTTGC+GGG 0.394199 2_1:+21963347 Msa0201130:CDS
GTGACATTTGACGATGTTGC+TGG 0.397504 2_1:+21962241 Msa0201130:CDS
TGAGACCTGTTTAGCCAAAC+TGG 0.398679 2_1:-21963793 None:intergenic
GCTGGTCGGCGTGGAAAGGC+GGG 0.400558 2_1:+21963220 Msa0201130:CDS
TTTGCAGCAAATAACCAGTT+TGG 0.406052 2_1:+21963779 Msa0201130:CDS
GCAAGAATTGTTGGTGGACT+CGG 0.406720 2_1:+21963693 Msa0201130:CDS
CATCCATTTCTGTCAAAAGT+TGG 0.407571 2_1:-21962624 None:intergenic
AAGAACTCCTTCAGAAATTC+AGG 0.407683 2_1:+21962002 Msa0201130:CDS
TTGTCATTGCAGCAACCAAC+AGG 0.410085 2_1:+21962671 Msa0201130:CDS
TTCTCCCGAGTTAGGTAATA+GGG 0.410483 2_1:+21961943 Msa0201130:CDS
CTATTAGCTAAGGCTATTGC+CGG 0.410709 2_1:+21962394 Msa0201130:CDS
AAAGTTGATCTGTTTGAGAA+TGG 0.413970 2_1:+21961896 Msa0201130:CDS
CCAAAAGGAGTTCTTCTCAT+TGG 0.418141 2_1:+21962349 Msa0201130:CDS
GGAAAGCGAGATTACCAATC+AGG 0.418850 2_1:-21962087 None:intergenic
GAAGACGTCTCTTACTTTCT+CGG 0.418976 2_1:+21961648 Msa0201130:CDS
AAGGAGTTCTTGGTTAAGTC+CGG 0.419721 2_1:-21961990 None:intergenic
GTGGGAAGGCAGCGAGGCAC+TGG 0.419887 2_1:+21962562 Msa0201130:CDS
AAAAGCCAAACAAGTATGTA+TGG 0.420045 2_1:-21964619 None:intergenic
CCAATGAGAAGAACTCCTTT+TGG 0.420186 2_1:-21962349 None:intergenic
ATGAGAACACCTGGCTTTAG+TGG 0.422828 2_1:+21963157 Msa0201130:CDS
CAAGATTGTGGAAGTTCTAC+TGG 0.423532 2_1:+21964334 Msa0201130:CDS
TTGAGTATTTGGACAAAGAC+AGG 0.423684 2_1:+21961867 Msa0201130:CDS
AGTTGACGTTCCAGATATTC+GGG 0.426318 2_1:+21963060 Msa0201130:CDS
ATCCTCCAATAACAATTAAA+GGG 0.427016 2_1:-21962108 None:intergenic
GACAGAAATGGATGGATTTG+AGG 0.427230 2_1:+21962633 Msa0201130:CDS
AGTTCCACGTGGTCAAGCTC+GGG 0.428138 2_1:+21963611 Msa0201130:CDS
GGTGAGCCTGAAGTTACAAC+TGG 0.429944 2_1:+21963744 Msa0201130:CDS
TAGTTCCACGTGGTCAAGCT+CGG 0.430253 2_1:+21963610 Msa0201130:CDS
TTCTGTCAAAAGTTGGTTGA+GGG 0.432083 2_1:-21962617 None:intergenic
GATACAGATGGCAGCATCAT+TGG 0.433014 2_1:+21961559 Msa0201130:intron
CAATCTTGTCGATGGCTTCA+CGG 0.435139 2_1:-21964319 None:intergenic
CTGGAGAAGGAGACAATTAC+CGG 0.435554 2_1:+21964353 Msa0201130:CDS
ACAGAAATGGATGGATTTGA+GGG 0.436192 2_1:+21962634 Msa0201130:CDS
ATCTAAGGCCAAATTTCAAA+TGG 0.437730 2_1:+21962204 Msa0201130:CDS
GAGCTTGACCACGTGGAACT+AGG 0.438621 2_1:-21963608 None:intergenic
GGAGGGACGGGAGGTCCCGG+TGG 0.438734 2_1:+21962157 Msa0201130:CDS
CGAATTCAGATCTCTCCTTT+CGG 0.439865 2_1:+21964379 Msa0201130:CDS
TTCCCTTTAATTGTTATTGG+AGG 0.439978 2_1:+21962106 Msa0201130:CDS
TCTGGAGGGACGGGAGGTCC+CGG 0.445216 2_1:+21962154 Msa0201130:CDS
ACCAAATAAACCAGACCCAC+CGG 0.448643 2_1:-21962173 None:intergenic
ATAGTGTCTTCCCAGTTCCT+GGG 0.450120 2_1:-21962375 None:intergenic
CTCTTTGCAAGAATTGTTGG+TGG 0.451084 2_1:+21963687 Msa0201130:CDS
ACTGAAATACTAAAGGTTCA+TGG 0.451842 2_1:+21963088 Msa0201130:CDS
GAGTTTGTTGAGATGTTTGT+CGG 0.453249 2_1:+21962454 Msa0201130:CDS
ATTTCAGGCTTACCCGCAAA+TGG 0.454987 2_1:-21963359 None:intergenic
AGAGAGAGCAGTGGTAGTGA+TGG 0.456963 2_1:-21959948 None:intergenic
TGGATTAATAAGAGAAATGA+TGG 0.459410 2_1:+21959805 Msa0201130:five_prime_UTR
TAGCAAGTCAACTGTGCTTA+CGG 0.466141 2_1:+21959711 Msa0201130:five_prime_UTR
AAGGCTATTGCCGGTGAAGC+AGG 0.474642 2_1:+21962403 Msa0201130:CDS
CCAATAGCAGTGAACCTCTC+AGG 0.474848 2_1:-21962316 None:intergenic
TAGTGGCATATCATGAAGTT+GGG 0.475871 2_1:+21963332 Msa0201130:CDS
AATGAAGCTGCTATATTAGC+TGG 0.476361 2_1:+21963202 Msa0201130:CDS
GAATGTCTGATATTGGTCCT+TGG 0.484443 2_1:+21964144 Msa0201130:CDS
TTAGATCAAAGTGAACATAA+AGG 0.486647 2_1:+21961722 Msa0201130:CDS
AGCTGGTCGGCGTGGAAAGG+CGG 0.487119 2_1:+21963219 Msa0201130:CDS
GCTGCTCCAGTTGTAACTTC+AGG 0.490036 2_1:-21963750 None:intergenic
GTTGTTTGGAGATTAGAGTT+GGG 0.490457 2_1:-21963662 None:intergenic
CAGATGAACGTCGTGAAAGA+AGG 0.492261 2_1:-21962135 None:intergenic
TTAGTGGCATATCATGAAGT+TGG 0.494346 2_1:+21963331 Msa0201130:CDS
AAATGGGACACCTGCTTCAC+CGG 0.495546 2_1:-21962413 None:intergenic
TGGTCACGATCCTGTACAAA+AGG 0.497276 2_1:+21963581 Msa0201130:CDS
CAGCGAGGCACTGGAATTGG+TGG 0.497715 2_1:+21962571 Msa0201130:CDS
CGAGGCACTGGAATTGGTGG+AGG 0.502668 2_1:+21962574 Msa0201130:CDS
TTGGCATGCCTTGTTGGGAG+TGG 0.502779 2_1:+21961578 Msa0201130:CDS
AGGAGTTCTTGGTTAAGTCC+GGG 0.503225 2_1:-21961989 None:intergenic
TGGGAAGAGCAAAAGTTTAG+TGG 0.504719 2_1:+21963315 Msa0201130:CDS
GATAGCAGAATCAATGTCTT+CGG 0.507463 2_1:-21964243 None:intergenic
AAAGCATATGCTGATGAAGA+AGG 0.508027 2_1:+21961809 Msa0201130:CDS
AGCTTGACCACGTGGAACTA+GGG 0.508918 2_1:-21963607 None:intergenic
GAAGGAACCGTGATGACAGA+TGG 0.509538 2_1:+21963295 Msa0201130:CDS
CTTTCACGACGTTCATCTGG+AGG 0.512429 2_1:+21962139 Msa0201130:CDS
TGATAGGATTGTGGCTGGAA+TGG 0.515789 2_1:+21963273 Msa0201130:CDS
GAAGTTACAACTGGAGCAGC+TGG 0.516496 2_1:+21963753 Msa0201130:CDS
CCAAACAAGTATGTATGGAT+AGG 0.516609 2_1:-21964614 None:intergenic
GAAGTTGGGCATGCCATTTG+CGG 0.518217 2_1:+21963346 Msa0201130:CDS
TTCGCGCTTCCTAATAATGC+AGG 0.518963 2_1:-21961788 None:intergenic
AGAAAATTGAGTAGGTAAAG+AGG 0.523792 2_1:-21964499 None:intergenic
CTGCACCCTATTACCTAACT+CGG 0.525297 2_1:-21961948 None:intergenic
GACTCTGCTTTATTGAGACC+AGG 0.525394 2_1:+21962706 Msa0201130:CDS
CTGCTGAAGGAGTTGAAGTA+GGG 0.525896 2_1:-21964433 None:intergenic
GCTCTTCCCATCTGTCATCA+CGG 0.527128 2_1:-21963302 None:intergenic
TCTATTGATAGGATTGTGGC+TGG 0.531918 2_1:+21963268 Msa0201130:CDS
TGACATTTGACGATGTTGCT+GGG 0.532102 2_1:+21962242 Msa0201130:CDS
AGTTCGCGATTTGTTCAAGA+AGG 0.533568 2_1:+21962492 Msa0201130:CDS
ACTGCTGAAGGAGTTGAAGT+AGG 0.534782 2_1:-21964434 None:intergenic
CAAAGTAATAAAATGACGCT+TGG 0.536288 2_1:+21961611 Msa0201130:CDS
TGGGGTAGATGAAGCCAAGC+AGG 0.537936 2_1:+21962261 Msa0201130:CDS
ATTGGAGCTCGCATACCAAA+AGG 0.538627 2_1:+21962334 Msa0201130:CDS
TGTCCTAACTAACACTAAGA+AGG 0.539570 2_1:-21964556 None:intergenic
ATATAGCAGCTTCATTCAAG+AGG 0.539636 2_1:-21963195 None:intergenic
ACAATTACAGAAAATTGAGT+AGG 0.541306 2_1:-21964507 None:intergenic
CGACGTTCATCTGGAGGGAC+GGG 0.541376 2_1:+21962145 Msa0201130:CDS
AAAGTGAACATAAAGGAAGA+AGG 0.541917 2_1:+21961729 Msa0201130:CDS
TGTGGAAGTTCTACTGGAGA+AGG 0.543802 2_1:+21964340 Msa0201130:CDS
TTTCTGTCAAAAGTTGGTTG+AGG 0.544666 2_1:-21962618 None:intergenic
CCAAATAAACCAGACCCACC+GGG 0.544944 2_1:-21962172 None:intergenic
TAGTGTCTTCCCAGTTCCTG+GGG 0.545048 2_1:-21962374 None:intergenic
GTCAAGAATATCAGCCCTGT+TGG 0.547630 2_1:-21962686 None:intergenic
ATTAGCTGGTCGGCGTGGAA+AGG 0.549165 2_1:+21963216 Msa0201130:CDS
ACATACCTTAACAAAGAGGA+TGG 0.550065 2_1:-21960029 None:intergenic
TCTTTGTCCTGAATTTCTGA+AGG 0.550332 2_1:-21962009 None:intergenic
GAGGGACGGGAGGTCCCGGT+GGG 0.550994 2_1:+21962158 Msa0201130:CDS
CAGTTGACTTGCTAGCTACA+AGG 0.551350 2_1:-21959702 None:intergenic
ACTCAAACAGCAACTGCTGA+AGG 0.551950 2_1:-21964446 None:intergenic
CGACGTCATCATGAGAATGA+TGG 0.553613 2_1:+21964193 Msa0201130:CDS
ATTAGAGTTGGGTCGTCAGA+AGG 0.559540 2_1:-21963651 None:intergenic
TACCTCCATAAAATCCTGCT+TGG 0.559846 2_1:-21962275 None:intergenic
AAGCATATGCTGATGAAGAA+GGG 0.560162 2_1:+21961810 Msa0201130:CDS
GGGAAGGACTGAAATACTAA+AGG 0.561384 2_1:+21963081 Msa0201130:CDS
ACTAAAGCCAGGTGTTCTCA+TGG 0.561775 2_1:-21963155 None:intergenic
AACTTCCACAATCTTGTCGA+TGG 0.563894 2_1:-21964327 None:intergenic
AGAATAAGACATTCTGGAGG+AGG 0.565733 2_1:-21961837 None:intergenic
TGAAGCCATCGACAAGATTG+TGG 0.568185 2_1:+21964322 Msa0201130:CDS
ACCTGTCTATCAAAACGTCC+TGG 0.570176 2_1:-21962724 None:intergenic
GAGAGATCTGAATTCGTCTC+CGG 0.571703 2_1:-21964372 None:intergenic
TGATTCTATTGATAGGATTG+TGG 0.572657 2_1:+21963264 Msa0201130:CDS
AGATCAGCTCCACTAAAGCC+AGG 0.577078 2_1:-21963166 None:intergenic
TGTTGATGAAATTGATGCTG+TGG 0.578699 2_1:+21962543 Msa0201130:CDS
GATGAAGAAATGAATGTGAC+GGG 0.581219 2_1:-21959894 None:intergenic
ACTCGGCGGCAGAGCTGCAG+AGG 0.582496 2_1:+21963710 Msa0201130:CDS
TAATAAAATGACGCTTGGCA+AGG 0.586263 2_1:+21961616 Msa0201130:CDS
AGGATTGTGGCTGGAATGGA+AGG 0.586347 2_1:+21963277 Msa0201130:CDS
GTAGTTGCCATGAGAACACC+TGG 0.593837 2_1:+21963148 Msa0201130:CDS
ACTTGCAGAACATTGACTCC+TGG 0.594685 2_1:+21963561 Msa0201130:intron
TGATGGTGATGTTTCTCTCG+AGG 0.595871 2_1:+21963126 Msa0201130:CDS
ACGACGTTCATCTGGAGGGA+CGG 0.596321 2_1:+21962144 Msa0201130:CDS
TGGGAAGACACTATTAGCTA+AGG 0.597005 2_1:+21962384 Msa0201130:CDS
CTGGTCGGCGTGGAAAGGCG+GGG 0.597582 2_1:+21963221 Msa0201130:CDS
AAATTGTTGAATGCCACAGT+TGG 0.602189 2_1:+21961761 Msa0201130:CDS
TTTCACGACGTTCATCTGGA+GGG 0.608872 2_1:+21962140 Msa0201130:CDS
TAGTTAAACCACTCCCAACA+AGG 0.609628 2_1:-21961586 None:intergenic
AAGGAACCGTGATGACAGAT+GGG 0.611269 2_1:+21963296 Msa0201130:CDS
ATGAAATTGATGCTGTGGGA+AGG 0.612181 2_1:+21962548 Msa0201130:CDS
ACATTGATTCTGCTATCAAG+AGG 0.615241 2_1:+21964249 Msa0201130:CDS
AGCATATGCTGATGAAGAAG+GGG 0.617134 2_1:+21961811 Msa0201130:CDS
AATATCAGACATTCCAAATG+TGG 0.618608 2_1:-21964135 None:intergenic
GGAGTTCTTGGTTAAGTCCG+GGG 0.619981 2_1:-21961988 None:intergenic
GTTGATGAAATTGATGCTGT+GGG 0.620027 2_1:+21962544 Msa0201130:CDS
GTTCCACGTGGTCAAGCTCG+GGG 0.621848 2_1:+21963612 Msa0201130:CDS
TGAGTATTTGGACAAAGACA+GGG 0.625201 2_1:+21961868 Msa0201130:CDS
ACGTTCCAGATATTCGGGGA+AGG 0.633581 2_1:+21963065 Msa0201130:CDS
GAATTTCAACAAACTCCGAA+AGG 0.633837 2_1:-21964394 None:intergenic
CGAGTGCGAGTTCAACTCCC+CGG 0.635105 2_1:+21961971 Msa0201130:CDS
AGTTACATACCTTAACAAAG+AGG 0.635127 2_1:-21960033 None:intergenic
TGCACCCTATTACCTAACTC+GGG 0.636078 2_1:-21961947 None:intergenic
GCTATATTAGCTGGTCGGCG+TGG 0.641587 2_1:+21963211 Msa0201130:CDS
AGATGAAGAAATGAATGTGA+CGG 0.643414 2_1:-21959895 None:intergenic
AAGCTGCTATATTAGCTGGT+CGG 0.645613 2_1:+21963206 Msa0201130:CDS
CGTTCATCTGGAGGGACGGG+AGG 0.645986 2_1:+21962148 Msa0201130:CDS
GACATTTGACGATGTTGCTG+GGG 0.649763 2_1:+21962243 Msa0201130:CDS
GGAGACATTCATCATCGAGA+AGG 0.651857 2_1:+21961669 Msa0201130:CDS
GAGGCACTGGAATTGGTGGA+GGG 0.651894 2_1:+21962575 Msa0201130:CDS
CATACCTTAACAAAGAGGAT+GGG 0.670908 2_1:-21960028 None:intergenic
AGAATTGTTGGTGGACTCGG+CGG 0.672410 2_1:+21963696 Msa0201130:CDS
AGACCCCGAGCTTGACCACG+TGG 0.672592 2_1:-21963615 None:intergenic
TGTCATTGCAGCAACCAACA+GGG 0.674219 2_1:+21962672 Msa0201130:CDS
GATGAGTCCATAAGTGACCA+AGG 0.675250 2_1:-21964161 None:intergenic
CATCATTCTCATGATGACGT+CGG 0.676386 2_1:-21964192 None:intergenic
AGTGTCTTCCCAGTTCCTGG+GGG 0.683851 2_1:-21962373 None:intergenic
GAGAGAAACGTGTAATAACA+AGG 0.684213 2_1:-21959872 None:intergenic
GTTGACGTTCCAGATATTCG+GGG 0.690814 2_1:+21963061 Msa0201130:CDS
TAATGCAGGTAAGCCAACTG+TGG 0.702625 2_1:-21961774 None:intergenic
GATGCTGTGGGAAGGCAGCG+AGG 0.704412 2_1:+21962556 Msa0201130:CDS
CCTAGAATAAGACATTCTGG+AGG 0.722320 2_1:-21961840 None:intergenic
TGGAACTATAGCTATCGTCG+AGG 0.774923 2_1:+21961916 Msa0201130:CDS
AAGGTAACCCTAGTTCCACG+TGG 0.814154 2_1:+21963600 Msa0201130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTATTTTTGTAATTTATT+TGG + chr2_1:21960296-21960315 Msa0201130:intron 10.0%
!! CAAAATATAACTAAATTATT+GGG - chr2_1:21960556-21960575 None:intergenic 10.0%
!! TCAAAATATAACTAAATTAT+TGG - chr2_1:21960557-21960576 None:intergenic 10.0%
!! ATAAATTTAAAAATAGCTTA+TGG + chr2_1:21960810-21960829 Msa0201130:intron 10.0%
!! ATCAACAAAAATAAGAATTA+AGG - chr2_1:21960078-21960097 None:intergenic 15.0%
!!! TTAGTTATATTTTGAGTTTT+TGG + chr2_1:21960562-21960581 Msa0201130:intron 15.0%
!!! TTGGTAAAAATATAGTATTT+TGG + chr2_1:21960593-21960612 Msa0201130:intron 15.0%
!!! TATAGTATTTTGGAATAATT+AGG + chr2_1:21960603-21960622 Msa0201130:intron 15.0%
!!! ATAGTATTTTGGAATAATTA+GGG + chr2_1:21960604-21960623 Msa0201130:intron 15.0%
!! TAACAAAAATAAAATGCAAT+TGG - chr2_1:21960632-21960651 None:intergenic 15.0%
!!! AATTGCATTTTATTTTTGTT+AGG + chr2_1:21960631-21960650 Msa0201130:intron 15.0%
!!! ATTGCATTTTATTTTTGTTA+GGG + chr2_1:21960632-21960651 Msa0201130:intron 15.0%
!! ATCAAAAACAATATTAGTAA+AGG + chr2_1:21961694-21961713 Msa0201130:CDS 15.0%
!! AGTAATTTACTCATTAATAA+GGG - chr2_1:21963017-21963036 None:intergenic 15.0%
!!! CTTTCATCATTTTGTATTTA+AGG - chr2_1:21959773-21959792 None:intergenic 20.0%
!! GATGAAAGAAAAAAACAAAT+TGG + chr2_1:21959785-21959804 Msa0201130:five_prime_UTR 20.0%
!!! GAAAATATTTTATTGTGTAG+TGG + chr2_1:21960412-21960431 Msa0201130:intron 20.0%
!!! TAGTATTTTGGAATAATTAG+GGG + chr2_1:21960605-21960624 Msa0201130:intron 20.0%
!!! TCAAAATTTTCAGATTAGAA+TGG + chr2_1:21960656-21960675 Msa0201130:intron 20.0%
!!! CAAAATTTTCAGATTAGAAT+GGG + chr2_1:21960657-21960676 Msa0201130:intron 20.0%
!!! AAAATTTTCAGATTAGAATG+GGG + chr2_1:21960658-21960677 Msa0201130:intron 20.0%
!!! ATTAAGTTTGTTATGTTATC+AGG + chr2_1:21961070-21961089 Msa0201130:intron 20.0%
!!! ACAATTTATGTACAACATTT+TGG + chr2_1:21961308-21961327 Msa0201130:intron 20.0%
!!! CAATTTATGTACAACATTTT+GGG + chr2_1:21961309-21961328 Msa0201130:intron 20.0%
!! ATACCTGATAAGAAATTAAT+TGG + chr2_1:21961389-21961408 Msa0201130:intron 20.0%
!!! TTTTGTAATCAGAAATTAGT+TGG + chr2_1:21961440-21961459 Msa0201130:intron 20.0%
!!! TCGATTGATGATTTTTATTA+TGG + chr2_1:21962901-21962920 Msa0201130:intron 20.0%
!! CAGTAATTTACTCATTAATA+AGG - chr2_1:21963018-21963037 None:intergenic 20.0%
!!! CTCATTTTCCATTTTTATTT+TGG + chr2_1:21963856-21963875 Msa0201130:intron 20.0%
!!! ATTTTCCATTTTTATTTTGG+TGG + chr2_1:21963859-21963878 Msa0201130:intron 20.0%
!!! TTTTCCATTTTTATTTTGGT+GGG + chr2_1:21963860-21963879 Msa0201130:intron 20.0%
! TGGATTAATAAGAGAAATGA+TGG + chr2_1:21959805-21959824 Msa0201130:five_prime_UTR 25.0%
! CAAGAAGAATGATGAATAAT+TGG - chr2_1:21959847-21959866 None:intergenic 25.0%
! ATAAGACGATTTAGCTAAAA+GGG - chr2_1:21960131-21960150 None:intergenic 25.0%
! TATAAGACGATTTAGCTAAA+AGG - chr2_1:21960132-21960151 None:intergenic 25.0%
! ATCCATAAATACATCATCTT+TGG - chr2_1:21960322-21960341 None:intergenic 25.0%
! ATGATGTATTTATGGATCAA+TGG + chr2_1:21960325-21960344 Msa0201130:intron 25.0%
! AAGTAGCTTATAAATAAGCA+GGG - chr2_1:21960705-21960724 None:intergenic 25.0%
! TTTATCTTGTAAAGTTGAGA+TGG + chr2_1:21960973-21960992 Msa0201130:intron 25.0%
! TTATCTTGTAAAGTTGAGAT+GGG + chr2_1:21960974-21960993 Msa0201130:intron 25.0%
!! TTGCAAAAGCTAATTAGTTT+AGG + chr2_1:21961030-21961049 Msa0201130:intron 25.0%
!! TGTGATTATTTTCATGTCAA+AGG + chr2_1:21961174-21961193 Msa0201130:intron 25.0%
!! GTGATTATTTTCATGTCAAA+GGG + chr2_1:21961175-21961194 Msa0201130:intron 25.0%
! TTAGATCAAAGTGAACATAA+AGG + chr2_1:21961722-21961741 Msa0201130:CDS 25.0%
! ATCCTCCAATAACAATTAAA+GGG - chr2_1:21962111-21962130 None:intergenic 25.0%
! AATCCTCCAATAACAATTAA+AGG - chr2_1:21962112-21962131 None:intergenic 25.0%
!! ATTTGGTTCCATTTGAAATT+TGG - chr2_1:21962215-21962234 None:intergenic 25.0%
! TCATCAACAAAAACAATACA+AGG - chr2_1:21962532-21962551 None:intergenic 25.0%
!! AGATTGATGATTCTATTGAT+AGG + chr2_1:21963257-21963276 Msa0201130:CDS 25.0%
! AGTGTAACATGAATTCATTA+TGG - chr2_1:21963446-21963465 None:intergenic 25.0%
! TACTTCAGAACAAAATTTCT+CGG - chr2_1:21963532-21963551 None:intergenic 25.0%
!!! TTTCCATTTTTATTTTGGTG+GGG + chr2_1:21963861-21963880 Msa0201130:intron 25.0%
! AAATTGCATTGAAGCATATA+AGG + chr2_1:21964291-21964310 Msa0201130:CDS 25.0%
! ACAATTACAGAAAATTGAGT+AGG - chr2_1:21964510-21964529 None:intergenic 25.0%
!!! TACTTGTTTGGCTTTTTATT+TGG + chr2_1:21964626-21964645 Msa0201130:three_prime_UTR 25.0%
! AGAAAATAGAAGCTACAAAA+AGG - chr2_1:21964656-21964675 None:intergenic 25.0%
AGATGAAGAAATGAATGTGA+CGG - chr2_1:21959898-21959917 None:intergenic 30.0%
AGTTACATACCTTAACAAAG+AGG - chr2_1:21960036-21960055 None:intergenic 30.0%
!! TTGTCACATCATTGATTCAT+AGG + chr2_1:21960378-21960397 Msa0201130:intron 30.0%
TGATTCATAGGATAAACAAC+TGG + chr2_1:21960390-21960409 Msa0201130:intron 30.0%
GAAGTAGCTTATAAATAAGC+AGG - chr2_1:21960706-21960725 None:intergenic 30.0%
ATAAGCTACTTCTATAGCAA+AGG + chr2_1:21960714-21960733 Msa0201130:intron 30.0%
! TGTTTTCATTAGCTATACTG+AGG + chr2_1:21960776-21960795 Msa0201130:intron 30.0%
TACTAACATAAGCATTTGTG+AGG - chr2_1:21960861-21960880 None:intergenic 30.0%
CCAATACAATATCAACAACT+GGG - chr2_1:21960914-21960933 None:intergenic 30.0%
CCAGTTGTTGATATTGTATT+GGG + chr2_1:21960912-21960931 Msa0201130:intron 30.0%
!!! AGGTTTTGATTCACAAAGAA+AGG + chr2_1:21961090-21961109 Msa0201130:intron 30.0%
AAAGGAGAAAAACAAAGAGT+TGG + chr2_1:21961108-21961127 Msa0201130:intron 30.0%
! AACAAAGAGTTGGATGTTTT+TGG + chr2_1:21961118-21961137 Msa0201130:intron 30.0%
! ACAAAGAGTTGGATGTTTTT+GGG + chr2_1:21961119-21961138 Msa0201130:intron 30.0%
CAACCATAAGAAGAAAAACT+CGG - chr2_1:21961256-21961275 None:intergenic 30.0%
!! ATTGACTGAATTTGTTGTGT+TGG + chr2_1:21961365-21961384 Msa0201130:intron 30.0%
CTGCCAATTAATTTCTTATC+AGG - chr2_1:21961395-21961414 None:intergenic 30.0%
TTAAACTGAATTCACTGTGT+TGG + chr2_1:21961416-21961435 Msa0201130:intron 30.0%
!!! CATCGTTTTTTCTTGTGATT+TGG - chr2_1:21961503-21961522 None:intergenic 30.0%
!! GAGTATCGAAAATATTGGTT+AGG - chr2_1:21961534-21961553 None:intergenic 30.0%
!! GAGAAGAGTATCGAAAATAT+TGG - chr2_1:21961539-21961558 None:intergenic 30.0%
CAAAGTAATAAAATGACGCT+TGG + chr2_1:21961611-21961630 Msa0201130:CDS 30.0%
AAAGTGAACATAAAGGAAGA+AGG + chr2_1:21961729-21961748 Msa0201130:CDS 30.0%
AAACCTAGAATAAGACATTC+TGG - chr2_1:21961846-21961865 None:intergenic 30.0%
TTCTAGGTTTCTTGAGTATT+TGG + chr2_1:21961856-21961875 Msa0201130:CDS 30.0%
! AAAGTTGATCTGTTTGAGAA+TGG + chr2_1:21961896-21961915 Msa0201130:CDS 30.0%
GCTTTCCCTTTAATTGTTAT+TGG + chr2_1:21962103-21962122 Msa0201130:CDS 30.0%
! TTCCCTTTAATTGTTATTGG+AGG + chr2_1:21962106-21962125 Msa0201130:CDS 30.0%
!!! ATTTGGTTTTGGTCAATCTA+AGG + chr2_1:21962189-21962208 Msa0201130:CDS 30.0%
! ATCTAAGGCCAAATTTCAAA+TGG + chr2_1:21962204-21962223 Msa0201130:CDS 30.0%
TTTCAAATGGAACCAAATAC+TGG + chr2_1:21962217-21962236 Msa0201130:CDS 30.0%
! AGTTTCTAAAAAAACCTGAG+AGG + chr2_1:21962302-21962321 Msa0201130:CDS 30.0%
AACCTGAGATTGAGAAAAAT+GGG - chr2_1:21962432-21962451 None:intergenic 30.0%
CAGGTAAGTAAGATTGTATT+AGG + chr2_1:21962742-21962761 Msa0201130:intron 30.0%
! TACTGAACATAATGTTTTGC+AGG + chr2_1:21963033-21963052 Msa0201130:intron 30.0%
ACTGAAATACTAAAGGTTCA+TGG + chr2_1:21963088-21963107 Msa0201130:CDS 30.0%
GGTAGCAATAAAAAGTTTGA+TGG + chr2_1:21963109-21963128 Msa0201130:CDS 30.0%
TGATTCTATTGATAGGATTG+TGG + chr2_1:21963264-21963283 Msa0201130:CDS 30.0%
! GACAACTACAGTTTAATTTC+AGG - chr2_1:21963377-21963396 None:intergenic 30.0%
AAAATGAGTGAGACGAATTA+TGG - chr2_1:21963844-21963863 None:intergenic 30.0%
ATTAGATTACCGTCAAAACA+AGG - chr2_1:21963902-21963921 None:intergenic 30.0%
!! GTTTTGACGGTAATCTAATT+TGG + chr2_1:21963903-21963922 Msa0201130:intron 30.0%
ATCTATTCTTTCGCTTAAAG+CGG - chr2_1:21964005-21964024 None:intergenic 30.0%
TGACAAAGTTGTAATCAGAA+GGG - chr2_1:21964079-21964098 None:intergenic 30.0%
ATGACAAAGTTGTAATCAGA+AGG - chr2_1:21964080-21964099 None:intergenic 30.0%
AATATCAGACATTCCAAATG+TGG - chr2_1:21964138-21964157 None:intergenic 30.0%
! ACATTTGGAATGTCTGATAT+TGG + chr2_1:21964137-21964156 Msa0201130:CDS 30.0%
AGAAAATTGAGTAGGTAAAG+AGG - chr2_1:21964502-21964521 None:intergenic 30.0%
AAAAGCCAAACAAGTATGTA+TGG - chr2_1:21964622-21964641 None:intergenic 30.0%
GAGAGAAACGTGTAATAACA+AGG - chr2_1:21959875-21959894 None:intergenic 35.0%
GATGAAGAAATGAATGTGAC+GGG - chr2_1:21959897-21959916 None:intergenic 35.0%
CATACCTTAACAAAGAGGAT+GGG - chr2_1:21960031-21960050 None:intergenic 35.0%
ACATACCTTAACAAAGAGGA+TGG - chr2_1:21960032-21960051 None:intergenic 35.0%
AAGGTATGTAACTATCTCTG+TGG + chr2_1:21960043-21960062 Msa0201130:intron 35.0%
TTCACAGTTCAACTAAGACT+TGG + chr2_1:21960172-21960191 Msa0201130:intron 35.0%
GGCCAAAGATGATGTATTTA+TGG + chr2_1:21960317-21960336 Msa0201130:intron 35.0%
!!! TGAGTTTTTGGTGCTTCATT+TGG + chr2_1:21960574-21960593 Msa0201130:intron 35.0%
!!! ACAACTGGGTTTGTTTTGAT+TGG - chr2_1:21960900-21960919 None:intergenic 35.0%
CCCAGTTGTTGATATTGTAT+TGG + chr2_1:21960911-21960930 Msa0201130:intron 35.0%
CCCAATACAATATCAACAAC+TGG - chr2_1:21960915-21960934 None:intergenic 35.0%
TATTGGGTTATGCTGTTACT+TGG + chr2_1:21960928-21960947 Msa0201130:intron 35.0%
GTGCATCTAAGTTCTCAATT+TGG + chr2_1:21961197-21961216 Msa0201130:intron 35.0%
! CATCCGAGTTTTTCTTCTTA+TGG + chr2_1:21961250-21961269 Msa0201130:intron 35.0%
!!! CGTTTTTTCTTGTGATTTGG+AGG - chr2_1:21961500-21961519 None:intergenic 35.0%
TAATAAAATGACGCTTGGCA+AGG + chr2_1:21961616-21961635 Msa0201130:CDS 35.0%
AAATTGTTGAATGCCACAGT+TGG + chr2_1:21961761-21961780 Msa0201130:CDS 35.0%
AAAGCATATGCTGATGAAGA+AGG + chr2_1:21961809-21961828 Msa0201130:CDS 35.0%
AAGCATATGCTGATGAAGAA+GGG + chr2_1:21961810-21961829 Msa0201130:CDS 35.0%
TTGAGTATTTGGACAAAGAC+AGG + chr2_1:21961867-21961886 Msa0201130:CDS 35.0%
TGAGTATTTGGACAAAGACA+GGG + chr2_1:21961868-21961887 Msa0201130:CDS 35.0%
! TGAATTTCTGAAGGAGTTCT+TGG - chr2_1:21962003-21962022 None:intergenic 35.0%
AAGAACTCCTTCAGAAATTC+AGG + chr2_1:21962002-21962021 Msa0201130:CDS 35.0%
TCTTTGTCCTGAATTTCTGA+AGG - chr2_1:21962012-21962031 None:intergenic 35.0%
! TCCTTCTTTTCAAACCTGAT+TGG + chr2_1:21962073-21962092 Msa0201130:CDS 35.0%
ACCAATCAGGTTTGAAAAGA+AGG - chr2_1:21962077-21962096 None:intergenic 35.0%
TCAAATGTCACTCCAGTATT+TGG - chr2_1:21962232-21962251 None:intergenic 35.0%
GAACCTGAGATTGAGAAAAA+TGG - chr2_1:21962433-21962452 None:intergenic 35.0%
!! GAGTTTGTTGAGATGTTTGT+CGG + chr2_1:21962454-21962473 Msa0201130:CDS 35.0%
!! AATACAAGGAGCATTCTCTT+TGG - chr2_1:21962518-21962537 None:intergenic 35.0%
! TGTTGATGAAATTGATGCTG+TGG + chr2_1:21962543-21962562 Msa0201130:CDS 35.0%
! GTTGATGAAATTGATGCTGT+GGG + chr2_1:21962544-21962563 Msa0201130:CDS 35.0%
! TTCTGTCAAAAGTTGGTTGA+GGG - chr2_1:21962620-21962639 None:intergenic 35.0%
! TTTCTGTCAAAAGTTGGTTG+AGG - chr2_1:21962621-21962640 None:intergenic 35.0%
! CAACCAACTTTTGACAGAAA+TGG + chr2_1:21962621-21962640 Msa0201130:CDS 35.0%
CATCCATTTCTGTCAAAAGT+TGG - chr2_1:21962627-21962646 None:intergenic 35.0%
! CAACTTTTGACAGAAATGGA+TGG + chr2_1:21962625-21962644 Msa0201130:CDS 35.0%
! ACAGAAATGGATGGATTTGA+GGG + chr2_1:21962634-21962653 Msa0201130:CDS 35.0%
ATATAGCAGCTTCATTCAAG+AGG - chr2_1:21963198-21963217 None:intergenic 35.0%
AATGAAGCTGCTATATTAGC+TGG + chr2_1:21963202-21963221 Msa0201130:CDS 35.0%
TTAGTGGCATATCATGAAGT+TGG + chr2_1:21963331-21963350 Msa0201130:CDS 35.0%
TAGTGGCATATCATGAAGTT+GGG + chr2_1:21963332-21963351 Msa0201130:CDS 35.0%
TCATGTTACACTTCTATACG+AGG + chr2_1:21963454-21963473 Msa0201130:intron 35.0%
AGGAGAATTGAGGAAAACAA+TGG + chr2_1:21963474-21963493 Msa0201130:intron 35.0%
GTTGTTTGGAGATTAGAGTT+GGG - chr2_1:21963665-21963684 None:intergenic 35.0%
! TGTTGTTTGGAGATTAGAGT+TGG - chr2_1:21963666-21963685 None:intergenic 35.0%
! TCTTGCAAAGAGTTGTTGTT+TGG - chr2_1:21963679-21963698 None:intergenic 35.0%
CAACTCTTTGCAAGAATTGT+TGG + chr2_1:21963684-21963703 Msa0201130:CDS 35.0%
TTTGCAGCAAATAACCAGTT+TGG + chr2_1:21963779-21963798 Msa0201130:CDS 35.0%
AATAACCAGTTTGGCTAAAC+AGG + chr2_1:21963788-21963807 Msa0201130:CDS 35.0%
CATCCCCACCAAAATAAAAA+TGG - chr2_1:21963867-21963886 None:intergenic 35.0%
!!! GCTATAAGTCCTTGTTTTGA+CGG + chr2_1:21963890-21963909 Msa0201130:intron 35.0%
! TTCTGAGCATTTTTGTGATC+AGG + chr2_1:21963944-21963963 Msa0201130:intron 35.0%
TGTGATCAGGTCATCTTTAA+AGG + chr2_1:21963957-21963976 Msa0201130:intron 35.0%
GTAGGAAAATGGGGAAAATA+AGG - chr2_1:21964052-21964071 None:intergenic 35.0%
AAGGGTAATGTAGGAAAATG+GGG - chr2_1:21964061-21964080 None:intergenic 35.0%
GAAGGGTAATGTAGGAAAAT+GGG - chr2_1:21964062-21964081 None:intergenic 35.0%
AGAAGGGTAATGTAGGAAAA+TGG - chr2_1:21964063-21964082 None:intergenic 35.0%
TGTAATCAGAAGGGTAATGT+AGG - chr2_1:21964070-21964089 None:intergenic 35.0%
TGAAATGATACTCTTGCAGA+TGG + chr2_1:21964109-21964128 Msa0201130:intron 35.0%
GATAGCAGAATCAATGTCTT+CGG - chr2_1:21964246-21964265 None:intergenic 35.0%
!! ACATTGATTCTGCTATCAAG+AGG + chr2_1:21964249-21964268 Msa0201130:CDS 35.0%
GAATTTCAACAAACTCCGAA+AGG - chr2_1:21964397-21964416 None:intergenic 35.0%
! TGAAGTAGGGACTACATTTT+CGG - chr2_1:21964423-21964442 None:intergenic 35.0%
GTTCCTTCTTAGTGTTAGTT+AGG + chr2_1:21964553-21964572 Msa0201130:three_prime_UTR 35.0%
TGTCCTAACTAACACTAAGA+AGG - chr2_1:21964559-21964578 None:intergenic 35.0%
CCAAACAAGTATGTATGGAT+AGG - chr2_1:21964617-21964636 None:intergenic 35.0%
CCTATCCATACATACTTGTT+TGG + chr2_1:21964614-21964633 Msa0201130:three_prime_UTR 35.0%
TAGCAAGTCAACTGTGCTTA+CGG + chr2_1:21959711-21959730 Msa0201130:five_prime_UTR 40.0%
!! TTGTGTAGTGGATGAAGAAC+TGG + chr2_1:21960424-21960443 Msa0201130:intron 40.0%
! TAGTGGATGAAGAACTGGAA+GGG + chr2_1:21960429-21960448 Msa0201130:intron 40.0%
TAAGTGCTTATTTACAGCGC+CGG + chr2_1:21960496-21960515 Msa0201130:intron 40.0%
ATTATTGGGCCATGTGTTGT+TGG - chr2_1:21960542-21960561 None:intergenic 40.0%
GATACTCTTCTCGATACAGA+TGG + chr2_1:21961547-21961566 Msa0201130:intron 40.0%
TAGTTAAACCACTCCCAACA+AGG - chr2_1:21961589-21961608 None:intergenic 40.0%
GAAGACGTCTCTTACTTTCT+CGG + chr2_1:21961648-21961667 Msa0201130:CDS 40.0%
! GTTGGCTTACCTGCATTATT+AGG + chr2_1:21961779-21961798 Msa0201130:CDS 40.0%
AGCATATGCTGATGAAGAAG+GGG + chr2_1:21961811-21961830 Msa0201130:CDS 40.0%
! AGAATAAGACATTCTGGAGG+AGG - chr2_1:21961840-21961859 None:intergenic 40.0%
CCTAGAATAAGACATTCTGG+AGG - chr2_1:21961843-21961862 None:intergenic 40.0%
! CCTCCAGAATGTCTTATTCT+AGG + chr2_1:21961840-21961859 Msa0201130:CDS 40.0%
TTTCTCCCGAGTTAGGTAAT+AGG + chr2_1:21961942-21961961 Msa0201130:CDS 40.0%
TTCTCCCGAGTTAGGTAATA+GGG + chr2_1:21961943-21961962 Msa0201130:CDS 40.0%
AAGGAGTTCTTGGTTAAGTC+CGG - chr2_1:21961993-21962012 None:intergenic 40.0%
!! GGGTCTGGTTTATTTGGTTT+TGG + chr2_1:21962178-21962197 Msa0201130:CDS 40.0%
TGACATTTGACGATGTTGCT+GGG + chr2_1:21962242-21962261 Msa0201130:CDS 40.0%
! TGAAGCCAAGCAGGATTTTA+TGG + chr2_1:21962270-21962289 Msa0201130:CDS 40.0%
TACCTCCATAAAATCCTGCT+TGG - chr2_1:21962278-21962297 None:intergenic 40.0%
! CCAATGAGAAGAACTCCTTT+TGG - chr2_1:21962352-21962371 None:intergenic 40.0%
CCAAAAGGAGTTCTTCTCAT+TGG + chr2_1:21962349-21962368 Msa0201130:CDS 40.0%
TGGGAAGACACTATTAGCTA+AGG + chr2_1:21962384-21962403 Msa0201130:CDS 40.0%
CTATTAGCTAAGGCTATTGC+CGG + chr2_1:21962394-21962413 Msa0201130:CDS 40.0%
!! GTCCCATTTTTCTCAATCTC+AGG + chr2_1:21962427-21962446 Msa0201130:CDS 40.0%
GTTGAGATGTTTGTCGGTAT+TGG + chr2_1:21962460-21962479 Msa0201130:CDS 40.0%
! AGTTCGCGATTTGTTCAAGA+AGG + chr2_1:21962492-21962511 Msa0201130:CDS 40.0%
ATGAAATTGATGCTGTGGGA+AGG + chr2_1:21962548-21962567 Msa0201130:CDS 40.0%
! GACAGAAATGGATGGATTTG+AGG + chr2_1:21962633-21962652 Msa0201130:CDS 40.0%
! GATGGATTTGAGGGTAATAC+TGG + chr2_1:21962643-21962662 Msa0201130:CDS 40.0%
CAGTTGACGTTCCAGATATT+CGG + chr2_1:21963059-21963078 Msa0201130:CDS 40.0%
AGTTGACGTTCCAGATATTC+GGG + chr2_1:21963060-21963079 Msa0201130:CDS 40.0%
GGGAAGGACTGAAATACTAA+AGG + chr2_1:21963081-21963100 Msa0201130:CDS 40.0%
AAGCTGCTATATTAGCTGGT+CGG + chr2_1:21963206-21963225 Msa0201130:CDS 40.0%
TCTATTGATAGGATTGTGGC+TGG + chr2_1:21963268-21963287 Msa0201130:CDS 40.0%
TGGGAAGAGCAAAAGTTTAG+TGG + chr2_1:21963315-21963334 Msa0201130:CDS 40.0%
CTTCTATACGAGGAGAATTG+AGG + chr2_1:21963464-21963483 Msa0201130:intron 40.0%
! ACTAGGGTTACCTTTTGTAC+AGG - chr2_1:21963594-21963613 None:intergenic 40.0%
CTCTTTGCAAGAATTGTTGG+TGG + chr2_1:21963687-21963706 Msa0201130:CDS 40.0%
! GCTGCAGAGGAGATTATTTT+TGG + chr2_1:21963723-21963742 Msa0201130:CDS 40.0%
! CGCTTAAAGCGGAAATTTTC+AGG - chr2_1:21963994-21964013 None:intergenic 40.0%
TTGCAGATGGTAACCACATT+TGG + chr2_1:21964122-21964141 Msa0201130:intron 40.0%
GAATGTCTGATATTGGTCCT+TGG + chr2_1:21964144-21964163 Msa0201130:CDS 40.0%
TATTGGTCCTTGGTCACTTA+TGG + chr2_1:21964154-21964173 Msa0201130:CDS 40.0%
! CATCATTCTCATGATGACGT+CGG - chr2_1:21964195-21964214 None:intergenic 40.0%
AACTTCCACAATCTTGTCGA+TGG - chr2_1:21964330-21964349 None:intergenic 40.0%
CAAGATTGTGGAAGTTCTAC+TGG + chr2_1:21964334-21964353 Msa0201130:CDS 40.0%
CGAATTCAGATCTCTCCTTT+CGG + chr2_1:21964379-21964398 Msa0201130:CDS 40.0%
! GAAGTAGGGACTACATTTTC+GGG - chr2_1:21964422-21964441 None:intergenic 40.0%
!! CAGTTGACTTGCTAGCTACA+AGG - chr2_1:21959705-21959724 None:intergenic 45.0%
CTCTCCCATCCTCTTTGTTA+AGG + chr2_1:21960024-21960043 Msa0201130:five_prime_UTR 45.0%
!! GTAGTGGATGAAGAACTGGA+AGG + chr2_1:21960428-21960447 Msa0201130:intron 45.0%
CAGGGTCGTCTTAAACACTT+TGG - chr2_1:21960687-21960706 None:intergenic 45.0%
GATACAGATGGCAGCATCAT+TGG + chr2_1:21961559-21961578 Msa0201130:intron 45.0%
! CATCATTGGCATGCCTTGTT+GGG + chr2_1:21961573-21961592 Msa0201130:CDS 45.0%
GGAGACATTCATCATCGAGA+AGG + chr2_1:21961669-21961688 Msa0201130:CDS 45.0%
TAATGCAGGTAAGCCAACTG+TGG - chr2_1:21961777-21961796 None:intergenic 45.0%
TTCGCGCTTCCTAATAATGC+AGG - chr2_1:21961791-21961810 None:intergenic 45.0%
TGGAACTATAGCTATCGTCG+AGG + chr2_1:21961916-21961935 Msa0201130:CDS 45.0%
TGCACCCTATTACCTAACTC+GGG - chr2_1:21961950-21961969 None:intergenic 45.0%
CTGCACCCTATTACCTAACT+CGG - chr2_1:21961951-21961970 None:intergenic 45.0%
AGGAGTTCTTGGTTAAGTCC+GGG - chr2_1:21961992-21962011 None:intergenic 45.0%
GGAAAGCGAGATTACCAATC+AGG - chr2_1:21962090-21962109 None:intergenic 45.0%
CAGATGAACGTCGTGAAAGA+AGG - chr2_1:21962138-21962157 None:intergenic 45.0%
CTTCTTTCACGACGTTCATC+TGG + chr2_1:21962136-21962155 Msa0201130:CDS 45.0%
TTTCACGACGTTCATCTGGA+GGG + chr2_1:21962140-21962159 Msa0201130:CDS 45.0%
ACCAAATAAACCAGACCCAC+CGG - chr2_1:21962176-21962195 None:intergenic 45.0%
GTGACATTTGACGATGTTGC+TGG + chr2_1:21962241-21962260 Msa0201130:CDS 45.0%
GACATTTGACGATGTTGCTG+GGG + chr2_1:21962243-21962262 Msa0201130:CDS 45.0%
! AGCCAAGCAGGATTTTATGG+AGG + chr2_1:21962273-21962292 Msa0201130:CDS 45.0%
! GCAGGATTTTATGGAGGTAG+TGG + chr2_1:21962279-21962298 Msa0201130:CDS 45.0%
ATTGGAGCTCGCATACCAAA+AGG + chr2_1:21962334-21962353 Msa0201130:CDS 45.0%
ATAGTGTCTTCCCAGTTCCT+GGG - chr2_1:21962378-21962397 None:intergenic 45.0%
AATAGTGTCTTCCCAGTTCC+TGG - chr2_1:21962379-21962398 None:intergenic 45.0%
TTGTCATTGCAGCAACCAAC+AGG + chr2_1:21962671-21962690 Msa0201130:CDS 45.0%
TGTCATTGCAGCAACCAACA+GGG + chr2_1:21962672-21962691 Msa0201130:CDS 45.0%
GTCAAGAATATCAGCCCTGT+TGG - chr2_1:21962689-21962708 None:intergenic 45.0%
! GACTCTGCTTTATTGAGACC+AGG + chr2_1:21962706-21962725 Msa0201130:CDS 45.0%
!! ACCAGGACGTTTTGATAGAC+AGG + chr2_1:21962723-21962742 Msa0201130:CDS 45.0%
ACCTGTCTATCAAAACGTCC+TGG - chr2_1:21962727-21962746 None:intergenic 45.0%
GTTGACGTTCCAGATATTCG+GGG + chr2_1:21963061-21963080 Msa0201130:CDS 45.0%
! TGATGGTGATGTTTCTCTCG+AGG + chr2_1:21963126-21963145 Msa0201130:CDS 45.0%
ACTAAAGCCAGGTGTTCTCA+TGG - chr2_1:21963158-21963177 None:intergenic 45.0%
!! ATGAGAACACCTGGCTTTAG+TGG + chr2_1:21963157-21963176 Msa0201130:CDS 45.0%
TGATAGGATTGTGGCTGGAA+TGG + chr2_1:21963273-21963292 Msa0201130:CDS 45.0%
AAGGAACCGTGATGACAGAT+GGG + chr2_1:21963296-21963315 Msa0201130:CDS 45.0%
ATTTCAGGCTTACCCGCAAA+TGG - chr2_1:21963362-21963381 None:intergenic 45.0%
!! ACTTGCAGAACATTGACTCC+TGG + chr2_1:21963561-21963580 Msa0201130:intron 45.0%
! TTTTGTACAGGATCGTGACC+AGG - chr2_1:21963582-21963601 None:intergenic 45.0%
TGGTCACGATCCTGTACAAA+AGG + chr2_1:21963581-21963600 Msa0201130:CDS 45.0%
ATTAGAGTTGGGTCGTCAGA+AGG - chr2_1:21963654-21963673 None:intergenic 45.0%
!! GCAAGAATTGTTGGTGGACT+CGG + chr2_1:21963693-21963712 Msa0201130:CDS 45.0%
TGAGACCTGTTTAGCCAAAC+TGG - chr2_1:21963796-21963815 None:intergenic 45.0%
GATGAGTCCATAAGTGACCA+AGG - chr2_1:21964164-21964183 None:intergenic 45.0%
CGACGTCATCATGAGAATGA+TGG + chr2_1:21964193-21964212 Msa0201130:CDS 45.0%
CAATCTTGTCGATGGCTTCA+CGG - chr2_1:21964322-21964341 None:intergenic 45.0%
TGAAGCCATCGACAAGATTG+TGG + chr2_1:21964322-21964341 Msa0201130:CDS 45.0%
TGTGGAAGTTCTACTGGAGA+AGG + chr2_1:21964340-21964359 Msa0201130:CDS 45.0%
CTGGAGAAGGAGACAATTAC+CGG + chr2_1:21964353-21964372 Msa0201130:CDS 45.0%
GAGAGATCTGAATTCGTCTC+CGG - chr2_1:21964375-21964394 None:intergenic 45.0%
CTGCTGAAGGAGTTGAAGTA+GGG - chr2_1:21964436-21964455 None:intergenic 45.0%
ACTGCTGAAGGAGTTGAAGT+AGG - chr2_1:21964437-21964456 None:intergenic 45.0%
ACTCAAACAGCAACTGCTGA+AGG - chr2_1:21964449-21964468 None:intergenic 45.0%
! AGAGAGAGCAGTGGTAGTGA+TGG - chr2_1:21959951-21959970 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr2_1:21959985-21960004 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr2_1:21959984-21960003 None:intergenic 50.0%
!! TATTTACAGCGCCGGCTGTT+TGG + chr2_1:21960504-21960523 Msa0201130:intron 50.0%
TGCAAGCGACCAACAACACA+TGG + chr2_1:21960530-21960549 Msa0201130:intron 50.0%
GCATCATTGGCATGCCTTGT+TGG + chr2_1:21961572-21961591 Msa0201130:CDS 50.0%
ACGCTTGGCAAGGACGTAAA+TGG + chr2_1:21961626-21961645 Msa0201130:CDS 50.0%
GGAGTTCTTGGTTAAGTCCG+GGG - chr2_1:21961991-21962010 None:intergenic 50.0%
CTTTCACGACGTTCATCTGG+AGG + chr2_1:21962139-21962158 Msa0201130:CDS 50.0%
CCAAATAAACCAGACCCACC+GGG - chr2_1:21962175-21962194 None:intergenic 50.0%
CCAATAGCAGTGAACCTCTC+AGG - chr2_1:21962319-21962338 None:intergenic 50.0%
CCTGAGAGGTTCACTGCTAT+TGG + chr2_1:21962316-21962335 Msa0201130:CDS 50.0%
TAGTGTCTTCCCAGTTCCTG+GGG - chr2_1:21962377-21962396 None:intergenic 50.0%
AAATGGGACACCTGCTTCAC+CGG - chr2_1:21962416-21962435 None:intergenic 50.0%
ACGTTCCAGATATTCGGGGA+AGG + chr2_1:21963065-21963084 Msa0201130:CDS 50.0%
TCAGTCCTTCCCCGAATATC+TGG - chr2_1:21963073-21963092 None:intergenic 50.0%
GTAGTTGCCATGAGAACACC+TGG + chr2_1:21963148-21963167 Msa0201130:CDS 50.0%
AGATCAGCTCCACTAAAGCC+AGG - chr2_1:21963169-21963188 None:intergenic 50.0%
AGGATTGTGGCTGGAATGGA+AGG + chr2_1:21963277-21963296 Msa0201130:CDS 50.0%
GAAGGAACCGTGATGACAGA+TGG + chr2_1:21963295-21963314 Msa0201130:CDS 50.0%
GCTCTTCCCATCTGTCATCA+CGG - chr2_1:21963305-21963324 None:intergenic 50.0%
! GAAGTTGGGCATGCCATTTG+CGG + chr2_1:21963346-21963365 Msa0201130:CDS 50.0%
! AAGTTGGGCATGCCATTTGC+GGG + chr2_1:21963347-21963366 Msa0201130:CDS 50.0%
AAGGTAACCCTAGTTCCACG+TGG + chr2_1:21963600-21963619 Msa0201130:CDS 50.0%
AGCTTGACCACGTGGAACTA+GGG - chr2_1:21963610-21963629 None:intergenic 50.0%
TAGTTCCACGTGGTCAAGCT+CGG + chr2_1:21963610-21963629 Msa0201130:CDS 50.0%
!! AGAATTGTTGGTGGACTCGG+CGG + chr2_1:21963696-21963715 Msa0201130:CDS 50.0%
GGTGAGCCTGAAGTTACAAC+TGG + chr2_1:21963744-21963763 Msa0201130:CDS 50.0%
GCTGCTCCAGTTGTAACTTC+AGG - chr2_1:21963753-21963772 None:intergenic 50.0%
GAAGTTACAACTGGAGCAGC+TGG + chr2_1:21963753-21963772 Msa0201130:CDS 50.0%
!! GTAGGGACTACATTTTCGGG+TGG - chr2_1:21964419-21964438 None:intergenic 50.0%
GGAGAGAGAAGAGAGAGCAG+TGG - chr2_1:21959960-21959979 None:intergenic 55.0%
GAGAGAGAGAGAGAGAGGGA+GGG - chr2_1:21959981-21960000 None:intergenic 55.0%
AGAGAGAGAGAGAGAGAGGG+AGG - chr2_1:21959982-21960001 None:intergenic 55.0%
! TTGGCATGCCTTGTTGGGAG+TGG + chr2_1:21961578-21961597 Msa0201130:CDS 55.0%
!! GAGGCTGTTTCTCCCGAGTT+AGG + chr2_1:21961935-21961954 Msa0201130:CDS 55.0%
ACGACGTTCATCTGGAGGGA+CGG + chr2_1:21962144-21962163 Msa0201130:CDS 55.0%
! CCCGGTGGGTCTGGTTTATT+TGG + chr2_1:21962172-21962191 Msa0201130:CDS 55.0%
TGGGGTAGATGAAGCCAAGC+AGG + chr2_1:21962261-21962280 Msa0201130:CDS 55.0%
GTTCTTCTCATTGGTCCCCC+AGG + chr2_1:21962358-21962377 Msa0201130:CDS 55.0%
TCATTGGTCCCCCAGGAACT+GGG + chr2_1:21962365-21962384 Msa0201130:CDS 55.0%
AGTGTCTTCCCAGTTCCTGG+GGG - chr2_1:21962376-21962395 None:intergenic 55.0%
AAGGCTATTGCCGGTGAAGC+AGG + chr2_1:21962403-21962422 Msa0201130:CDS 55.0%
!! GAGGCACTGGAATTGGTGGA+GGG + chr2_1:21962575-21962594 Msa0201130:CDS 55.0%
GCTATATTAGCTGGTCGGCG+TGG + chr2_1:21963211-21963230 Msa0201130:CDS 55.0%
ATTAGCTGGTCGGCGTGGAA+AGG + chr2_1:21963216-21963235 Msa0201130:CDS 55.0%
GAGCTTGACCACGTGGAACT+AGG - chr2_1:21963611-21963630 None:intergenic 55.0%
AGTTCCACGTGGTCAAGCTC+GGG + chr2_1:21963611-21963630 Msa0201130:CDS 55.0%
GTCAAGCTCGGGGTCTTACT+TGG + chr2_1:21963622-21963641 Msa0201130:CDS 55.0%
CGCTTGCACAGCCAAACAGC+CGG - chr2_1:21960518-21960537 None:intergenic 60.0%
CGAGTGCGAGTTCAACTCCC+CGG + chr2_1:21961971-21961990 Msa0201130:CDS 60.0%
CGACGTTCATCTGGAGGGAC+GGG + chr2_1:21962145-21962164 Msa0201130:CDS 60.0%
CTCATTGGTCCCCCAGGAAC+TGG + chr2_1:21962364-21962383 Msa0201130:CDS 60.0%
!! AGGCAGCGAGGCACTGGAAT+TGG + chr2_1:21962568-21962587 Msa0201130:CDS 60.0%
!! CAGCGAGGCACTGGAATTGG+TGG + chr2_1:21962571-21962590 Msa0201130:CDS 60.0%
!! CGAGGCACTGGAATTGGTGG+AGG + chr2_1:21962574-21962593 Msa0201130:CDS 60.0%
GTTCCACGTGGTCAAGCTCG+GGG + chr2_1:21963612-21963631 Msa0201130:CDS 60.0%
CGTTCATCTGGAGGGACGGG+AGG + chr2_1:21962148-21962167 Msa0201130:CDS 65.0%
GATGCTGTGGGAAGGCAGCG+AGG + chr2_1:21962556-21962575 Msa0201130:CDS 65.0%
AGCTGGTCGGCGTGGAAAGG+CGG + chr2_1:21963219-21963238 Msa0201130:CDS 65.0%
AGACCCCGAGCTTGACCACG+TGG - chr2_1:21963618-21963637 None:intergenic 65.0%
TCTGGAGGGACGGGAGGTCC+CGG + chr2_1:21962154-21962173 Msa0201130:CDS 70.0%
GTGGGAAGGCAGCGAGGCAC+TGG + chr2_1:21962562-21962581 Msa0201130:CDS 70.0%
GCTGGTCGGCGTGGAAAGGC+GGG + chr2_1:21963220-21963239 Msa0201130:CDS 70.0%
CTGGTCGGCGTGGAAAGGCG+GGG + chr2_1:21963221-21963240 Msa0201130:CDS 70.0%
ACTCGGCGGCAGAGCTGCAG+AGG + chr2_1:21963710-21963729 Msa0201130:CDS 70.0%
GAGGGACGGGAGGTCCCGGT+GGG + chr2_1:21962158-21962177 Msa0201130:CDS 75.0%
ACGGGAGGTCCCGGTGGGTC+TGG + chr2_1:21962163-21962182 Msa0201130:CDS 75.0%
! GGAGGGACGGGAGGTCCCGG+TGG + chr2_1:21962157-21962176 Msa0201130:CDS 80.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 21959691 21964678 21959691 ID=Msa0201130;Name=Msa0201130
chr2_1 mRNA 21959691 21964678 21959691 ID=Msa0201130-mRNA-1;Parent=Msa0201130;Name=Msa0201130-mRNA-1;_AED=0.03;_eAED=0.03;_QI=328|1|1|1|0.6|0.66|6|212|690
chr2_1 exon 21959691 21959962 21959691 ID=Msa0201130-mRNA-1:exon:8810;Parent=Msa0201130-mRNA-1
chr2_1 exon 21959990 21960045 21959990 ID=Msa0201130-mRNA-1:exon:8811;Parent=Msa0201130-mRNA-1
chr2_1 exon 21961566 21962744 21961566 ID=Msa0201130-mRNA-1:exon:8812;Parent=Msa0201130-mRNA-1
chr2_1 exon 21963055 21963368 21963055 ID=Msa0201130-mRNA-1:exon:8813;Parent=Msa0201130-mRNA-1
chr2_1 exon 21963569 21963809 21963569 ID=Msa0201130-mRNA-1:exon:8814;Parent=Msa0201130-mRNA-1
chr2_1 exon 21964128 21964678 21964128 ID=Msa0201130-mRNA-1:exon:8815;Parent=Msa0201130-mRNA-1
chr2_1 five_prime_UTR 21959691 21959962 21959691 ID=Msa0201130-mRNA-1:five_prime_utr;Parent=Msa0201130-mRNA-1
chr2_1 five_prime_UTR 21959990 21960045 21959990 ID=Msa0201130-mRNA-1:five_prime_utr;Parent=Msa0201130-mRNA-1
chr2_1 CDS 21961566 21962744 21961566 ID=Msa0201130-mRNA-1:cds;Parent=Msa0201130-mRNA-1
chr2_1 CDS 21963055 21963368 21963055 ID=Msa0201130-mRNA-1:cds;Parent=Msa0201130-mRNA-1
chr2_1 CDS 21963569 21963809 21963569 ID=Msa0201130-mRNA-1:cds;Parent=Msa0201130-mRNA-1
chr2_1 CDS 21964128 21964466 21964128 ID=Msa0201130-mRNA-1:cds;Parent=Msa0201130-mRNA-1
chr2_1 three_prime_UTR 21964467 21964678 21964467 ID=Msa0201130-mRNA-1:three_prime_utr;Parent=Msa0201130-mRNA-1
Gene Sequence

>Msa0201130

ATGGCAGCATCATTGGCATGCCTTGTTGGGAGTGGTTTAACTACACAAAGTAATAAAATGACGCTTGGCAAGGACGTAAATGGAAGACGTCTCTTACTTTCTCGGAGACATTCATCATCGAGAAGGACATCAAAAACAATATTAGTAAAGGCATTGTTAGATCAAAGTGAACATAAAGGAAGAAGGAGATTTCTGAAATTGTTGAATGCCACAGTTGGCTTACCTGCATTATTAGGAAGCGCGAAAGCATATGCTGATGAAGAAGGGGTTTCCTCCTCCAGAATGTCTTATTCTAGGTTTCTTGAGTATTTGGACAAAGACAGGGTTAAAAAAGTTGATCTGTTTGAGAATGGAACTATAGCTATCGTCGAGGCTGTTTCTCCCGAGTTAGGTAATAGGGTGCAGCGAGTGCGAGTTCAACTCCCCGGACTTAACCAAGAACTCCTTCAGAAATTCAGGACAAAGAACATCGACTTTGCAGCTCATAATGCTCAAGAAGAGTCAGATTCCTTCTTTTCAAACCTGATTGGTAATCTCGCTTTCCCTTTAATTGTTATTGGAGGATTATTCCTTCTTTCACGACGTTCATCTGGAGGGACGGGAGGTCCCGGTGGGTCTGGTTTATTTGGTTTTGGTCAATCTAAGGCCAAATTTCAAATGGAACCAAATACTGGAGTGACATTTGACGATGTTGCTGGGGTAGATGAAGCCAAGCAGGATTTTATGGAGGTAGTGGAGTTTCTAAAAAAACCTGAGAGGTTCACTGCTATTGGAGCTCGCATACCAAAAGGAGTTCTTCTCATTGGTCCCCCAGGAACTGGGAAGACACTATTAGCTAAGGCTATTGCCGGTGAAGCAGGTGTCCCATTTTTCTCAATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTCGGTATTGGTGCTTCTCGAGTTCGCGATTTGTTCAAGAAGGCCAAAGAGAATGCTCCTTGTATTGTTTTTGTTGATGAAATTGATGCTGTGGGAAGGCAGCGAGGCACTGGAATTGGTGGAGGGAACGATGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACTGGAATCATTGTCATTGCAGCAACCAACAGGGCTGATATTCTTGACTCTGCTTTATTGAGACCAGGACGTTTTGATAGACAGGTATCAGTTGACGTTCCAGATATTCGGGGAAGGACTGAAATACTAAAGGTTCATGGTAGCAATAAAAAGTTTGATGGTGATGTTTCTCTCGAGGTAGTTGCCATGAGAACACCTGGCTTTAGTGGAGCTGATCTTGCAAACCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGTGGAAAGGCGGGGATTTCATCAAAAGAGATTGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAACCGTGATGACAGATGGGAAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGGCATGCCATTTGCGGAACATTGACTCCTGGTCACGATCCTGTACAAAAGGTAACCCTAGTTCCACGTGGTCAAGCTCGGGGTCTTACTTGGTTCATTCCTTCTGACGACCCAACTCTAATCTCCAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTCGGCGGCAGAGCTGCAGAGGAGATTATTTTTGGTGAGCCTGAAGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAATAACCAGTTTGGCTAAACAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGACTCATCTCAAAATGCCGACGTCATCATGAGAATGATGGCAAGAAACTCAATGTCAGAAAAGCTTGCCGAAGACATTGATTCTGCTATCAAGAGGCTCTCAGATGAAGCATATGAAATTGCATTGAAGCATATAAGGAACAACCGTGAAGCCATCGACAAGATTGTGGAAGTTCTACTGGAGAAGGAGACAATTACCGGAGACGAATTCAGATCTCTCCTTTCGGAGTTTGTTGAAATTCCACCCGAAAATGTAGTCCCTACTTCAACTCCTTCAGCAGTTGCTGTTTGA
Protein sequence

>Msa0201130

MAASLACLVGSGLTTQSNKMTLGKDVNGRRLLLSRRHSSSRRTSKTILVKALLDQSEHKGRRRFLKLLNATVGLPALLGSAKAYADEEGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVSPELGNRVQRVRVQLPGLNQELLQKFRTKNIDFAAHNAQEESDSFFSNLIGNLAFPLIVIGGLFLLSRRSSGGTGGPGGSGLFGFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDIRGRTEILKVHGSNKKFDGDVSLEVVAMRTPGFSGADLANLLNEAAILAGRRGKAGISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITSLAKQMVTTFGMSDIGPWSLMDSSQNADVIMRMMARNSMSEKLAEDIDSAIKRLSDEAYEIALKHIRNNREAIDKIVEVLLEKETITGDEFRSLLSEFVEIPPENVVPTSTPSAVAV*