Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0352640 | XP_003599534.2 | 96.532 | 519 | 18 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1028 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0352640 | sp|Q9FFZ1|PPH_ARATH | 66.143 | 446 | 143 | 5 | 66 | 506 | 30 | 472 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0352640 | G7IZM0 | 96.532 | 519 | 18 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1028 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070090 | Msa0352640 | 0.829554 | 4.822778e-55 | -8.615850e-47 |
| Msa0135740 | Msa0352640 | -0.812367 | 4.393567e-51 | -8.615850e-47 |
| Msa0156780 | Msa0352640 | 0.800380 | 1.480857e-48 | -8.615850e-47 |
| Msa0160650 | Msa0352640 | 0.826580 | 2.509303e-54 | -8.615850e-47 |
| Msa0188500 | Msa0352640 | 0.817131 | 3.866835e-52 | -8.615850e-47 |
| Msa0200870 | Msa0352640 | 0.806243 | 9.041527e-50 | -8.615850e-47 |
| Msa0201130 | Msa0352640 | 0.823765 | 1.161045e-53 | -8.615850e-47 |
| Msa0203180 | Msa0352640 | 0.806297 | 8.810196e-50 | -8.615850e-47 |
| Msa0223190 | Msa0352640 | 0.829791 | 4.224925e-55 | -8.615850e-47 |
| Msa0230980 | Msa0352640 | 0.841682 | 4.096541e-58 | -8.615850e-47 |
| Msa0246300 | Msa0352640 | 0.803817 | 2.908574e-49 | -8.615850e-47 |
| Msa0264420 | Msa0352640 | 0.836578 | 8.620779e-57 | -8.615850e-47 |
| Msa0270460 | Msa0352640 | 0.830755 | 2.455596e-55 | -8.615850e-47 |
| Msa0302310 | Msa0352640 | 0.825938 | 3.567495e-54 | -8.615850e-47 |
| Msa0309060 | Msa0352640 | 0.822103 | 2.833222e-53 | -8.615850e-47 |
| Msa0325510 | Msa0352640 | 0.841031 | 6.080797e-58 | -8.615850e-47 |
| Msa0339670 | Msa0352640 | 0.832375 | 9.798229e-56 | -8.615850e-47 |
| Msa0343990 | Msa0352640 | 0.820545 | 6.483543e-53 | -8.615850e-47 |
| Msa0352640 | Msa0362430 | 0.809541 | 1.798107e-50 | -8.615850e-47 |
| Msa0352640 | Msa0364010 | 0.837105 | 6.323791e-57 | -8.615850e-47 |
| Msa0352640 | Msa0379720 | 0.818940 | 1.508023e-52 | -8.615850e-47 |
| Msa0352640 | Msa0403720 | 0.820137 | 8.039259e-53 | -8.615850e-47 |
| Msa0352640 | Msa0417130 | 0.822858 | 1.891550e-53 | -8.615850e-47 |
| Msa0352640 | Msa0421390 | 0.828052 | 1.113835e-54 | -8.615850e-47 |
| Msa0352640 | Msa0429100 | 0.832345 | 9.967474e-56 | -8.615850e-47 |
| Msa0352640 | Msa0429130 | 0.819286 | 1.257952e-52 | -8.615850e-47 |
| Msa0352640 | Msa0431940 | 0.822035 | 2.937947e-53 | -8.615850e-47 |
| Msa0352640 | Msa0436600 | 0.821885 | 3.182145e-53 | -8.615850e-47 |
| Msa0352640 | Msa0436610 | 0.809967 | 1.455980e-50 | -8.615850e-47 |
| Msa0352640 | Msa0448400 | 0.848239 | 6.956054e-60 | -8.615850e-47 |
| Msa0352640 | Msa0456480 | 0.823159 | 1.609390e-53 | -8.615850e-47 |
| Msa0352640 | Msa0496460 | 0.862161 | 6.163444e-64 | -8.615850e-47 |
| Msa0352640 | Msa0496470 | 0.869047 | 4.149067e-66 | -8.615850e-47 |
| Msa0352640 | Msa0496570 | 0.864659 | 1.037242e-64 | -8.615850e-47 |
| Msa0352640 | Msa0519540 | 0.801004 | 1.104707e-48 | -8.615850e-47 |
| Msa0352640 | Msa0520810 | 0.824582 | 7.467271e-54 | -8.615850e-47 |
| Msa0352640 | Msa0546370 | 0.878980 | 1.809448e-69 | -8.615850e-47 |
| Msa0352640 | Msa0547200 | -0.802070 | 6.678950e-49 | -8.615850e-47 |
| Msa0352640 | Msa0554440 | 0.827853 | 1.243904e-54 | -8.615850e-47 |
| Msa0352640 | Msa0585930 | 0.800399 | 1.467987e-48 | -8.615850e-47 |
| Msa0352640 | Msa0601920 | -0.824817 | 6.571433e-54 | -8.615850e-47 |
| Msa0352640 | Msa0623360 | 0.836251 | 1.044151e-56 | -8.615850e-47 |
| Msa0352640 | Msa0630850 | 0.860839 | 1.561341e-63 | -8.615850e-47 |
| Msa0352640 | Msa0643020 | -0.825820 | 3.806038e-54 | -8.615850e-47 |
| Msa0352640 | Msa0648200 | 0.823823 | 1.125490e-53 | -8.615850e-47 |
| Msa0352640 | Msa0648300 | 0.846578 | 1.989628e-59 | -8.615850e-47 |
| Msa0352640 | Msa0664110 | 0.810949 | 8.936328e-51 | -8.615850e-47 |
| Msa0352640 | Msa0664130 | 0.818113 | 2.321979e-52 | -8.615850e-47 |
| Msa0352640 | Msa0681880 | 0.849482 | 3.142941e-60 | -8.615850e-47 |
| Msa0352640 | Msa0682730 | -0.805788 | 1.127192e-49 | -8.615850e-47 |
| Msa0352640 | Msa0691140 | 0.823558 | 1.298363e-53 | -8.615850e-47 |
| Msa0352640 | Msa0714060 | 0.800467 | 1.421897e-48 | -8.615850e-47 |
| Msa0352640 | Msa0714200 | 0.803570 | 3.273597e-49 | -8.615850e-47 |
| Msa0352640 | Msa0729780 | 0.870422 | 1.476443e-66 | -8.615850e-47 |
| Msa0352640 | Msa0736930 | 0.800170 | 1.634436e-48 | -8.615850e-47 |
| Msa0352640 | Msa0738600 | 0.806368 | 8.508324e-50 | -8.615850e-47 |
| Msa0352640 | Msa0753980 | 0.808752 | 2.653816e-50 | -8.615850e-47 |
| Msa0352640 | Msa0766880 | 0.811738 | 6.023573e-51 | -8.615850e-47 |
| Msa0352640 | Msa0770020 | 0.869320 | 3.381759e-66 | -8.615850e-47 |
| Msa0352640 | Msa0775420 | 0.831226 | 1.881908e-55 | -8.615850e-47 |
| Msa0352640 | Msa0796460 | 0.841118 | 5.768913e-58 | -8.615850e-47 |
| Msa0352640 | Msa0807980 | 0.818035 | 2.418786e-52 | -8.615850e-47 |
| Msa0352640 | Msa0812800 | 0.821723 | 3.469256e-53 | -8.615850e-47 |
| Msa0352640 | Msa0818950 | 0.809922 | 1.489128e-50 | -8.615850e-47 |
| Msa0352640 | Msa0835550 | 0.807992 | 3.854638e-50 | -8.615850e-47 |
| Msa0352640 | Msa0848980 | 0.882341 | 1.129586e-70 | -8.615850e-47 |
| Msa0352640 | Msa0861560 | 0.804187 | 2.436279e-49 | -8.615850e-47 |
| Msa0352640 | Msa0923910 | 0.802173 | 6.360001e-49 | -8.615850e-47 |
| Msa0352640 | Msa0967250 | 0.813883 | 2.042308e-51 | -8.615850e-47 |
| Msa0352640 | Msa0975560 | 0.803091 | 4.113323e-49 | -8.615850e-47 |
| Msa0352640 | Msa0984820 | 0.803025 | 4.243509e-49 | -8.615850e-47 |
| Msa0352640 | Msa0995220 | 0.803686 | 3.096198e-49 | -8.615850e-47 |
| Msa0352640 | Msa0998940 | 0.812895 | 3.368277e-51 | -8.615850e-47 |
| Msa0352640 | Msa1016130 | 0.836977 | 6.818872e-57 | -8.615850e-47 |
| Msa0352640 | Msa1033230 | 0.804578 | 2.020095e-49 | -8.615850e-47 |
| Msa0352640 | Msa1041550 | 0.829194 | 5.900727e-55 | -8.615850e-47 |
| Msa0352640 | Msa1044450 | 0.824044 | 9.990463e-54 | -8.615850e-47 |
| Msa0352640 | Msa1072770 | 0.837504 | 5.000479e-57 | -8.615850e-47 |
| Msa0352640 | Msa1081530 | 0.826012 | 3.425794e-54 | -8.615850e-47 |
| Msa0352640 | Msa1122480 | 0.840242 | 9.782218e-58 | -8.615850e-47 |
| Msa0352640 | Msa1161120 | 0.862713 | 4.170346e-64 | -8.615850e-47 |
| Msa0352640 | Msa1166450 | 0.822390 | 2.430725e-53 | -8.615850e-47 |
| Msa0352640 | Msa1186580 | 0.803077 | 4.140977e-49 | -8.615850e-47 |
| Msa0352640 | Msa1188820 | 0.829174 | 5.966897e-55 | -8.615850e-47 |
| Msa0352640 | Msa1216700 | 0.818608 | 1.793554e-52 | -8.615850e-47 |
| Msa0352640 | Msa1223510 | 0.806110 | 9.643860e-50 | -8.615850e-47 |
| Msa0352640 | Msa1229770 | 0.839189 | 1.838757e-57 | -8.615850e-47 |
| Msa0352640 | Msa1240060 | -0.814176 | 1.760354e-51 | -8.615850e-47 |
| Msa0352640 | Msa1240820 | 0.813795 | 2.135948e-51 | -8.615850e-47 |
| Msa0352640 | Msa1262740 | 0.833047 | 6.672105e-56 | -8.615850e-47 |
| Msa0352640 | Msa1263610 | 0.831819 | 1.344872e-55 | -8.615850e-47 |
| Msa0352640 | Msa1281370 | -0.805890 | 1.072902e-49 | -8.615850e-47 |
| Msa0352640 | Msa1306700 | 0.801511 | 8.699731e-49 | -8.615850e-47 |
| Msa0352640 | Msa1320530 | -0.818003 | 2.458272e-52 | -8.615850e-47 |
| Msa0352640 | Msa1323920 | 0.836559 | 8.718681e-57 | -8.615850e-47 |
| Msa0352640 | Msa1329660 | 0.805964 | 1.034967e-49 | -8.615850e-47 |
| Msa0352640 | Msa1342400 | 0.847947 | 8.377994e-60 | -8.615850e-47 |
| Msa0352640 | Msa1353280 | 0.883750 | 3.442957e-71 | -8.615850e-47 |
| Msa0352640 | Msa1357720 | 0.831142 | 1.974147e-55 | -8.615850e-47 |
| Msa0352640 | Msa1368660 | 0.825671 | 4.127906e-54 | -8.615850e-47 |
| Msa0352640 | Msa1370630 | 0.803107 | 4.082663e-49 | -8.615850e-47 |
| Msa0352640 | Msa1388270 | 0.800175 | 1.630616e-48 | -8.615850e-47 |
| Msa0352640 | Msa1409050 | 0.817449 | 3.278365e-52 | -8.615850e-47 |
| Msa0352640 | Msa1409760 | 0.800396 | 1.469722e-48 | -8.615850e-47 |
| Msa0352640 | Msa1427180 | 0.827206 | 1.777826e-54 | -8.615850e-47 |
| Msa0352640 | Msa1428440 | 0.800355 | 1.498651e-48 | -8.615850e-47 |
| Msa0352640 | Msa1433380 | 0.805159 | 1.526808e-49 | -8.615850e-47 |
| Msa0352640 | Msa1445700 | 0.839102 | 1.936774e-57 | -8.615850e-47 |
| Msa0352640 | Msa1446220 | 0.808495 | 3.012222e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0352640 | MtrunA17_Chr3g0090521 | 96.532 | 519 | 18 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1028 |
| Msa0352640 | MtrunA17_Chr8g0372991 | 29.032 | 372 | 209 | 12 | 95 | 456 | 45 | 371 | 2.56e-31 | 124 |
| Msa0352640 | MtrunA17_Chr5g0423381 | 24.923 | 325 | 206 | 9 | 133 | 457 | 61 | 347 | 1.90e-24 | 104 |
| Msa0352640 | MtrunA17_Chr1g0188361 | 24.781 | 343 | 194 | 13 | 129 | 450 | 91 | 390 | 1.21e-20 | 94.0 |
| Msa0352640 | MtrunA17_Chr4g0018641 | 26.316 | 323 | 174 | 11 | 139 | 452 | 411 | 678 | 7.31e-20 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0352640 | AT5G13800.3 | 66.143 | 446 | 143 | 5 | 66 | 506 | 53 | 495 | 0.0 | 611 |
| Msa0352640 | AT5G13800.2 | 66.143 | 446 | 143 | 5 | 66 | 506 | 30 | 472 | 0.0 | 610 |
| Msa0352640 | AT5G13800.1 | 66.143 | 446 | 143 | 5 | 66 | 506 | 30 | 472 | 0.0 | 610 |
| Msa0352640 | AT5G13800.4 | 70.479 | 376 | 105 | 4 | 66 | 438 | 30 | 402 | 0.0 | 557 |
| Msa0352640 | AT4G36530.1 | 29.942 | 344 | 189 | 12 | 116 | 447 | 2 | 305 | 8.96e-28 | 114 |
| Msa0352640 | AT4G36530.2 | 30.696 | 316 | 170 | 12 | 138 | 447 | 90 | 362 | 1.95e-27 | 114 |
| Msa0352640 | AT5G19850.1 | 25.301 | 332 | 209 | 10 | 116 | 447 | 64 | 356 | 5.65e-23 | 100 |
| Msa0352640 | AT4G25290.1 | 26.444 | 329 | 177 | 11 | 133 | 453 | 402 | 673 | 3.92e-18 | 88.2 |
Find 130 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTAAAAGACTCAAATTTA+AGG | 0.189165 | 3_1:+21856580 | Msa0352640:CDS |
| CTCTGTAAGTTTCTTTATAT+TGG | 0.196085 | 3_1:-21857894 | None:intergenic |
| TCATAATGAACATTCAATTT+AGG | 0.203184 | 3_1:-21856764 | None:intergenic |
| CTAACTCCCTTTCAATAGTT+TGG | 0.243271 | 3_1:-21859091 | None:intergenic |
| ATCAATAATCTTTACACAAT+TGG | 0.245251 | 3_1:+21856491 | Msa0352640:CDS |
| AATGTTTCGCCTTGGGGTTT+TGG | 0.273427 | 3_1:+21856992 | Msa0352640:CDS |
| ATCCTTGGGTGACACCTATA+TGG | 0.274359 | 3_1:+21858482 | Msa0352640:CDS |
| AGAACATAGTTGCTGATAAA+TGG | 0.276045 | 3_1:+21856343 | Msa0352640:exon |
| GAGAAGCAGTTGATGGATTT+AGG | 0.290761 | 3_1:+21856863 | Msa0352640:CDS |
| TGCCTCTAGTGTCTCACTTT+GGG | 0.296121 | 3_1:+21859160 | Msa0352640:CDS |
| TATTGCCGATGTACTTAATC+AGG | 0.311983 | 3_1:+21858189 | Msa0352640:CDS |
| TTTCCATACATGAGGCAAAT+AGG | 0.316000 | 3_1:-21858454 | None:intergenic |
| ATTTGATAATACGGAGCTTC+AGG | 0.335225 | 3_1:-21858529 | None:intergenic |
| GGCGACTGAGCTTGTGTATT+CGG | 0.337582 | 3_1:+21857033 | Msa0352640:CDS |
| CTCAAATTTAAGGTTAATAG+TGG | 0.351895 | 3_1:+21856590 | Msa0352640:CDS |
| GATGAAGGAAGAGATATTGT+AGG | 0.356457 | 3_1:+21856641 | Msa0352640:CDS |
| GAGTGGAAATGTTTCGCCTT+GGG | 0.357128 | 3_1:+21856985 | Msa0352640:CDS |
| GTAATCAACAAAGTGGGTTT+AGG | 0.363219 | 3_1:+21856537 | Msa0352640:CDS |
| GCTCCCTTGTCTAAGGTAGA+AGG | 0.382996 | 3_1:+21856953 | Msa0352640:CDS |
| TCATTATGAGAAGCAGTTGA+TGG | 0.388498 | 3_1:+21856856 | Msa0352640:CDS |
| AGATCCTGCTCCCTTGTCTA+AGG | 0.389835 | 3_1:+21856946 | Msa0352640:CDS |
| TCAATAATCTTTACACAATT+GGG | 0.398675 | 3_1:+21856492 | Msa0352640:CDS |
| ACAAATTCGTTACAGGTCAT+TGG | 0.399559 | 3_1:+21857680 | Msa0352640:intron |
| GTCATAAATTTCTTACTTCG+TGG | 0.404663 | 3_1:+21858999 | Msa0352640:CDS |
| CGCTGAAGGATAACTCTCCT+TGG | 0.406544 | 3_1:-21858318 | None:intergenic |
| TTGCCTCTAGTGTCTCACTT+TGG | 0.408372 | 3_1:+21859159 | Msa0352640:CDS |
| GCTGAAGGATAACTCTCCTT+GGG | 0.410986 | 3_1:-21858317 | None:intergenic |
| GACACCTATATGGGGACTTC+AGG | 0.417003 | 3_1:+21858492 | Msa0352640:CDS |
| TAAATGGAAACTCTTTCATA+TGG | 0.421548 | 3_1:+21856359 | Msa0352640:exon |
| TTAACCTGAAGTCCCCATAT+AGG | 0.431257 | 3_1:-21858496 | None:intergenic |
| TCCTTGGGTGACACCTATAT+GGG | 0.437100 | 3_1:+21858483 | Msa0352640:CDS |
| ATGAAGGAAGAGATATTGTA+GGG | 0.437799 | 3_1:+21856642 | Msa0352640:CDS |
| GCAAATGAGGCCGCAGCAGC+AGG | 0.440282 | 3_1:-21858277 | None:intergenic |
| AACTACCACCTCCTTGGACT+TGG | 0.440929 | 3_1:-21859213 | None:intergenic |
| GTGCCTATTTGCCTCATGTA+TGG | 0.445133 | 3_1:+21858451 | Msa0352640:CDS |
| CTCCCTTGTCTAAGGTAGAA+GGG | 0.445278 | 3_1:+21856954 | Msa0352640:CDS |
| TGTATGGAAAAGAAGATCCT+TGG | 0.446455 | 3_1:+21858467 | Msa0352640:CDS |
| GGTGAACCAGTCTATATTGT+AGG | 0.447745 | 3_1:+21857701 | Msa0352640:CDS |
| AAGGTTAATAGTGGAAGTTA+TGG | 0.452518 | 3_1:+21856599 | Msa0352640:CDS |
| GATGAATCCAACGGTGAATC+CGG | 0.455013 | 3_1:+21856707 | Msa0352640:CDS |
| CGAGTGGAAATGTTTCGCCT+TGG | 0.459293 | 3_1:+21856984 | Msa0352640:CDS |
| TACAATAGTTTAGAGTTGCT+TGG | 0.463091 | 3_1:-21855989 | None:intergenic |
| TCATGAGGGCAGTGACCAGC+AGG | 0.463365 | 3_1:-21858556 | None:intergenic |
| GTTTGAATTCAACTCAATCA+AGG | 0.466524 | 3_1:+21856435 | Msa0352640:CDS |
| TTCTTTATATTGGAAGGTAG+AGG | 0.466947 | 3_1:-21857884 | None:intergenic |
| TAAATTTCTTACTTCGTGGA+TGG | 0.469086 | 3_1:+21859003 | Msa0352640:CDS |
| TAAAGATCAAAAGTATGTAT+TGG | 0.469357 | 3_1:-21859379 | None:intergenic |
| GGGACTTCAGGTTAAAAGAA+AGG | 0.469897 | 3_1:+21858504 | Msa0352640:CDS |
| AGATTCAACTACCACCTCCT+TGG | 0.474343 | 3_1:-21859219 | None:intergenic |
| TTGTGTATTCGGTTGATTTG+TGG | 0.474969 | 3_1:+21857044 | Msa0352640:CDS |
| ATTTGTGGCAAGATCAAGTT+CGG | 0.475459 | 3_1:+21857059 | Msa0352640:CDS |
| GTTACACCTTTCACTAAATG+AGG | 0.478531 | 3_1:-21857770 | None:intergenic |
| GACTTGCCAAAGTATTTCCA+TGG | 0.484178 | 3_1:+21857849 | Msa0352640:CDS |
| TCCGGCCCATGGAAATACTT+TGG | 0.486998 | 3_1:-21857855 | None:intergenic |
| GGTTGATGTACCTGCTTCAA+AGG | 0.488420 | 3_1:+21856664 | Msa0352640:CDS |
| CCAAATCCAGTAAAATCTCC+TGG | 0.495923 | 3_1:+21857827 | Msa0352640:CDS |
| GAAAAGGGTAATCAACAAAG+TGG | 0.495970 | 3_1:+21856530 | Msa0352640:CDS |
| AACTATTGTATATCTCTCCT+TGG | 0.497467 | 3_1:+21856002 | Msa0352640:five_prime_UTR |
| GCAGGGCTGATTTGATAATA+CGG | 0.497952 | 3_1:-21858538 | None:intergenic |
| CGCAGATCATTCAATAAATG+TGG | 0.501542 | 3_1:+21858216 | Msa0352640:CDS |
| GCCAAAGTATTTCCATGGGC+CGG | 0.503917 | 3_1:+21857854 | Msa0352640:CDS |
| TATTATCAAATCAGCCCTGC+TGG | 0.505858 | 3_1:+21858541 | Msa0352640:CDS |
| AATGTTCATTATGAGAAAGC+TGG | 0.506517 | 3_1:+21856773 | Msa0352640:CDS |
| CCTTGATAATGTTTCGCTGA+AGG | 0.506677 | 3_1:-21858332 | None:intergenic |
| GGAAGGTAGAGGGAATGTTC+CGG | 0.508251 | 3_1:-21857873 | None:intergenic |
| GTAAGTTTCTTTATATTGGA+AGG | 0.510123 | 3_1:-21857890 | None:intergenic |
| TATAAACCAAACTATTGAAA+GGG | 0.510732 | 3_1:+21859085 | Msa0352640:CDS |
| GTATGGAAAAGAAGATCCTT+GGG | 0.512378 | 3_1:+21858468 | Msa0352640:CDS |
| GATTCACCGTTGGATTCATC+CGG | 0.520359 | 3_1:-21856704 | None:intergenic |
| GGAAATACTTTGGCAAGTCC+AGG | 0.521700 | 3_1:-21857845 | None:intergenic |
| CTATAAACCAAACTATTGAA+AGG | 0.524444 | 3_1:+21859084 | Msa0352640:CDS |
| AGAGGGAATGTTCCGGCCCA+TGG | 0.525112 | 3_1:-21857866 | None:intergenic |
| TCAATTATGTTTGCTCCCCA+AGG | 0.529087 | 3_1:+21858301 | Msa0352640:CDS |
| AAGGGAGCAGGATCTTCAAA+AGG | 0.531179 | 3_1:-21856938 | None:intergenic |
| CTAGTGTCTCACTTTGGGAC+AGG | 0.531866 | 3_1:+21859165 | Msa0352640:CDS |
| AGAGAGAGCCATCAGACTCT+AGG | 0.533108 | 3_1:-21859034 | None:intergenic |
| TCTTTATATTGGAAGGTAGA+GGG | 0.533932 | 3_1:-21857883 | None:intergenic |
| CCTTCAGCGAAACATTATCA+AGG | 0.535892 | 3_1:+21858332 | Msa0352640:CDS |
| TGCTATCCTCATTTAGTGAA+AGG | 0.537578 | 3_1:+21857764 | Msa0352640:CDS |
| AGTGGAAATGTTTCGCCTTG+GGG | 0.549038 | 3_1:+21856986 | Msa0352640:CDS |
| CGCAGCAGCAGGATGTCTTG+TGG | 0.550424 | 3_1:-21858266 | None:intergenic |
| CACCGCACCGGATTCACCGT+TGG | 0.550804 | 3_1:-21856714 | None:intergenic |
| TTGGATTCATCCGGTAAACC+AGG | 0.555967 | 3_1:-21856695 | None:intergenic |
| TATAAAGAAACTTACAGAGT+TGG | 0.559672 | 3_1:+21857898 | Msa0352640:CDS |
| AAACATAATTGAAGCAAATG+AGG | 0.562765 | 3_1:-21858290 | None:intergenic |
| TGGAGATGAAACGGAACCAT+GGG | 0.563371 | 3_1:+21857012 | Msa0352640:CDS |
| AAAATTCTATTCCAAGTCCA+AGG | 0.565946 | 3_1:+21859202 | Msa0352640:CDS |
| AGAAAAGACAATGTACAAAG+TGG | 0.567857 | 3_1:-21859280 | None:intergenic |
| CACAAGACATCCTGCTGCTG+CGG | 0.570898 | 3_1:+21858267 | Msa0352640:CDS |
| GAAAGCTGGGTGTGAAAATG+TGG | 0.572261 | 3_1:+21856787 | Msa0352640:CDS |
| GGAATCAAAACCTTTGAAGC+AGG | 0.573711 | 3_1:-21856674 | None:intergenic |
| AAAGAACCAACACCGAAACC+CGG | 0.578498 | 3_1:-21856833 | None:intergenic |
| CTATTCCAAGTCCAAGGAGG+TGG | 0.580393 | 3_1:+21859208 | Msa0352640:CDS |
| TAAGATTAAGAGCAGATCCA+AGG | 0.584580 | 3_1:-21856019 | None:intergenic |
| TTGGAGATGAAACGGAACCA+TGG | 0.589474 | 3_1:+21857011 | Msa0352640:CDS |
| GAATTGCCTACAATATAGAC+TGG | 0.590145 | 3_1:-21857707 | None:intergenic |
| GTGTCTATTTCTTCAAGCAG+AGG | 0.590583 | 3_1:-21859062 | None:intergenic |
| ACCCCTTCTACCTTAGACAA+GGG | 0.590895 | 3_1:-21856956 | None:intergenic |
| TCTACCTTAGACAAGGGAGC+AGG | 0.592055 | 3_1:-21856950 | None:intergenic |
| AGTTCGGTACTTCATTGAAG+AGG | 0.593978 | 3_1:+21857075 | Msa0352640:CDS |
| TCCCTTGTCTAAGGTAGAAG+GGG | 0.609995 | 3_1:+21856955 | Msa0352640:CDS |
| TACACAAGCTCAGTCGCCCA+TGG | 0.613173 | 3_1:-21857028 | None:intergenic |
| ATGTTCATTATGAGAAAGCT+GGG | 0.614844 | 3_1:+21856774 | Msa0352640:CDS |
| GTAGAAGGGGTTATGTCGAG+TGG | 0.616320 | 3_1:+21856968 | Msa0352640:CDS |
| ACAACTACTTATCACCGCAC+CGG | 0.616475 | 3_1:-21856726 | None:intergenic |
| AAAAGGGTAATCAACAAAGT+GGG | 0.617388 | 3_1:+21856531 | Msa0352640:CDS |
| CAAAGTGGATTTATATCTGA+TGG | 0.619263 | 3_1:-21859265 | None:intergenic |
| ACTTGCCAAAGTATTTCCAT+GGG | 0.623837 | 3_1:+21857850 | Msa0352640:CDS |
| ATTAGAAACCTAGAGTCTGA+TGG | 0.625268 | 3_1:+21859026 | Msa0352640:CDS |
| ATTGTAGGCAATTCACTAGG+AGG | 0.628400 | 3_1:+21857716 | Msa0352640:CDS |
| GTGTTCATAACTTGAAAACA+TGG | 0.628452 | 3_1:-21856389 | None:intergenic |
| AACCCCTTCTACCTTAGACA+AGG | 0.633155 | 3_1:-21856957 | None:intergenic |
| CCCCATATAGGTGTCACCCA+AGG | 0.637101 | 3_1:-21858484 | None:intergenic |
| GTTTCATCTCCAAAACCCCA+AGG | 0.642054 | 3_1:-21857001 | None:intergenic |
| GTAGTTGAATCTCAATGAGA+TGG | 0.645518 | 3_1:+21859230 | Msa0352640:exon |
| TATGTGATTAATGAAGATGA+AGG | 0.646571 | 3_1:+21856626 | Msa0352640:CDS |
| TATATTGTAGGCAATTCACT+AGG | 0.646604 | 3_1:+21857713 | Msa0352640:CDS |
| ACCTCAGGGACTTCATCATG+AGG | 0.651405 | 3_1:-21858571 | None:intergenic |
| AGTGGATTTATATCTGATGG+TGG | 0.658701 | 3_1:-21859262 | None:intergenic |
| GTCCCAAAGTGAGACACTAG+AGG | 0.660707 | 3_1:-21859162 | None:intergenic |
| TGAAGGAAGAGATATTGTAG+GGG | 0.662501 | 3_1:+21856643 | Msa0352640:CDS |
| CCCTCATGATGAAGTCCCTG+AGG | 0.665003 | 3_1:+21858570 | Msa0352640:CDS |
| CCTCAGGGACTTCATCATGA+GGG | 0.670617 | 3_1:-21858570 | None:intergenic |
| GGTTTACCGGATGAATCCAA+CGG | 0.680274 | 3_1:+21856698 | Msa0352640:CDS |
| CATGAGGGCAGTGACCAGCA+GGG | 0.689126 | 3_1:-21858555 | None:intergenic |
| GTAAACCTGATTAAGTACAT+CGG | 0.689690 | 3_1:-21858194 | None:intergenic |
| CTGAAGGATAACTCTCCTTG+GGG | 0.694476 | 3_1:-21858316 | None:intergenic |
| CCTTGGGTGACACCTATATG+GGG | 0.695951 | 3_1:+21858484 | Msa0352640:CDS |
| ATTCTATTCCAAGTCCAAGG+AGG | 0.718477 | 3_1:+21859205 | Msa0352640:CDS |
| ATCCAACGGTGAATCCGGTG+CGG | 0.730193 | 3_1:+21856712 | Msa0352640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCTTTTTTTTTTTTGA+AGG | + | chr3_1:21856292-21856311 | Msa0352640:five_prime_UTR | 10.0% |
| !!! | TTTTCTTATATTAGAAAAAA+TGG | + | chr3_1:21856458-21856477 | Msa0352640:CDS | 10.0% |
| !! | TCTAAAAAAGAAAATTCATT+TGG | + | chr3_1:21857246-21857265 | Msa0352640:intron | 15.0% |
| !! | TAAAAATACTAAATCATATC+AGG | - | chr3_1:21857972-21857991 | None:intergenic | 15.0% |
| !! | ACCCATAAAAATATATTAGT+CGG | + | chr3_1:21855934-21855953 | Msa0352640:five_prime_UTR | 20.0% |
| !!! | ACCGACTAATATATTTTTAT+GGG | - | chr3_1:21855938-21855957 | None:intergenic | 20.0% |
| !!! | AACCGACTAATATATTTTTA+TGG | - | chr3_1:21855939-21855958 | None:intergenic | 20.0% |
| !! | TTCTTCTTTCACTAAATTTA+AGG | + | chr3_1:21856072-21856091 | Msa0352640:intron | 20.0% |
| !! | ATAAAACATGAACATGTATA+TGG | - | chr3_1:21856106-21856125 | None:intergenic | 20.0% |
| !!! | TGAAAATCAAGTTGAATTTT+TGG | + | chr3_1:21856258-21856277 | Msa0352640:intron | 20.0% |
| !! | TCTTATATTAGAAAAAATGG+AGG | + | chr3_1:21856461-21856480 | Msa0352640:CDS | 20.0% |
| !! | ATCAATAATCTTTACACAAT+TGG | + | chr3_1:21856491-21856510 | Msa0352640:CDS | 20.0% |
| !! | TCAATAATCTTTACACAATT+GGG | + | chr3_1:21856492-21856511 | Msa0352640:CDS | 20.0% |
| !!! | TCATTGAGATTTTATGAAAA+GGG | + | chr3_1:21856515-21856534 | Msa0352640:CDS | 20.0% |
| !! | TCATAATGAACATTCAATTT+AGG | - | chr3_1:21856767-21856786 | None:intergenic | 20.0% |
| !!! | TCGTCAAAAATAATTTTTGA+AGG | + | chr3_1:21857622-21857641 | Msa0352640:intron | 20.0% |
| !! | TTATTATACAAATTCGTTAC+AGG | + | chr3_1:21857673-21857692 | Msa0352640:intron | 20.0% |
| !! | TAGTTGAATAGATATGATAA+GGG | - | chr3_1:21858112-21858131 | None:intergenic | 20.0% |
| !! | TTAGTTGAATAGATATGATA+AGG | - | chr3_1:21858113-21858132 | None:intergenic | 20.0% |
| !!! | ATCCAATTTTATTTATTTGC+AGG | + | chr3_1:21858977-21858996 | Msa0352640:intron | 20.0% |
| !! | TATAAACCAAACTATTGAAA+GGG | + | chr3_1:21859085-21859104 | Msa0352640:CDS | 20.0% |
| !!! | GATTTTTTTGAACTTTTTCT+TGG | - | chr3_1:21859122-21859141 | None:intergenic | 20.0% |
| !!! | GATTCTAAAAAAATTGTGTA+TGG | - | chr3_1:21859322-21859341 | None:intergenic | 20.0% |
| !!! | TAAAGATCAAAAGTATGTAT+TGG | - | chr3_1:21859382-21859401 | None:intergenic | 20.0% |
| !!! | ATATATTAGTCGGTTTTTCT+TGG | + | chr3_1:21855944-21855963 | Msa0352640:five_prime_UTR | 25.0% |
| ! | TAAATGGAAACTCTTTCATA+TGG | + | chr3_1:21856359-21856378 | Msa0352640:exon | 25.0% |
| !! | GTCATTGAGATTTTATGAAA+AGG | + | chr3_1:21856514-21856533 | Msa0352640:CDS | 25.0% |
| ! | CACTAAAAGACTCAAATTTA+AGG | + | chr3_1:21856580-21856599 | Msa0352640:CDS | 25.0% |
| !! | CTCAAATTTAAGGTTAATAG+TGG | + | chr3_1:21856590-21856609 | Msa0352640:CDS | 25.0% |
| ! | TATGTGATTAATGAAGATGA+AGG | + | chr3_1:21856626-21856645 | Msa0352640:CDS | 25.0% |
| !!! | GTGATAAGTAGTTGTTTTAA+GGG | + | chr3_1:21856734-21856753 | Msa0352640:CDS | 25.0% |
| !!! | ACCAAATGTTTTATTTTTGC+CGG | + | chr3_1:21856814-21856833 | Msa0352640:CDS | 25.0% |
| ! | TATACTATTTGAGCAAACAA+TGG | - | chr3_1:21857149-21857168 | None:intergenic | 25.0% |
| !! | GAAAAAATCTAAAACCACAT+AGG | - | chr3_1:21857203-21857222 | None:intergenic | 25.0% |
| !!! | TTTTTTCTAACAACTTATGC+TGG | + | chr3_1:21857216-21857235 | Msa0352640:intron | 25.0% |
| ! | TCAAATAAGTCAATTCAAAC+AGG | - | chr3_1:21857272-21857291 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | + | chr3_1:21857464-21857483 | Msa0352640:intron | 25.0% |
| ! | AATGCTTCCTATACTTATAA+TGG | + | chr3_1:21857558-21857577 | Msa0352640:intron | 25.0% |
| ! | TGAGTAACCATTATAAGTAT+AGG | - | chr3_1:21857568-21857587 | None:intergenic | 25.0% |
| ! | GTAAGTTTCTTTATATTGGA+AGG | - | chr3_1:21857893-21857912 | None:intergenic | 25.0% |
| ! | CTCTGTAAGTTTCTTTATAT+TGG | - | chr3_1:21857897-21857916 | None:intergenic | 25.0% |
| ! | TATAAAGAAACTTACAGAGT+TGG | + | chr3_1:21857898-21857917 | Msa0352640:CDS | 25.0% |
| ! | AGTTGAATAGATATGATAAG+GGG | - | chr3_1:21858111-21858130 | None:intergenic | 25.0% |
| !!! | CTTGTTAATTTGTTTCCTTT+AGG | + | chr3_1:21858140-21858159 | Msa0352640:intron | 25.0% |
| !!! | TTAATTTGTTTCCTTTAGGT+GGG | + | chr3_1:21858144-21858163 | Msa0352640:intron | 25.0% |
| ! | AAACATAATTGAAGCAAATG+AGG | - | chr3_1:21858293-21858312 | None:intergenic | 25.0% |
| ! | CAATTGCTAACTAATTAACT+TGG | + | chr3_1:21858597-21858616 | Msa0352640:intron | 25.0% |
| ! | ATGATCTTAGAATTTCAGTT+GGG | - | chr3_1:21858762-21858781 | None:intergenic | 25.0% |
| ! | TATGATCTTAGAATTTCAGT+TGG | - | chr3_1:21858763-21858782 | None:intergenic | 25.0% |
| ! | TCATAAAGAACTAAACAATG+AGG | - | chr3_1:21858934-21858953 | None:intergenic | 25.0% |
| ! | GACCTGCAAATAAATAAAAT+TGG | - | chr3_1:21858982-21859001 | None:intergenic | 25.0% |
| ! | CTATAAACCAAACTATTGAA+AGG | + | chr3_1:21859084-21859103 | Msa0352640:CDS | 25.0% |
| ! | TACAATAGTTTAGAGTTGCT+TGG | - | chr3_1:21855992-21856011 | None:intergenic | 30.0% |
| AACTATTGTATATCTCTCCT+TGG | + | chr3_1:21856002-21856021 | Msa0352640:five_prime_UTR | 30.0% | |
| AGAACATAGTTGCTGATAAA+TGG | + | chr3_1:21856343-21856362 | Msa0352640:exon | 30.0% | |
| GTGTTCATAACTTGAAAACA+TGG | - | chr3_1:21856392-21856411 | None:intergenic | 30.0% | |
| GTTTGAATTCAACTCAATCA+AGG | + | chr3_1:21856435-21856454 | Msa0352640:CDS | 30.0% | |
| AAAAGGGTAATCAACAAAGT+GGG | + | chr3_1:21856531-21856550 | Msa0352640:CDS | 30.0% | |
| ! | AAGGTTAATAGTGGAAGTTA+TGG | + | chr3_1:21856599-21856618 | Msa0352640:CDS | 30.0% |
| ATGAAGGAAGAGATATTGTA+GGG | + | chr3_1:21856642-21856661 | Msa0352640:CDS | 30.0% | |
| !! | GGTGATAAGTAGTTGTTTTA+AGG | + | chr3_1:21856733-21856752 | Msa0352640:CDS | 30.0% |
| !!! | TAAGTAGTTGTTTTAAGGGA+TGG | + | chr3_1:21856738-21856757 | Msa0352640:CDS | 30.0% |
| AATGTTCATTATGAGAAAGC+TGG | + | chr3_1:21856773-21856792 | Msa0352640:CDS | 30.0% | |
| ATGTTCATTATGAGAAAGCT+GGG | + | chr3_1:21856774-21856793 | Msa0352640:CDS | 30.0% | |
| !!! | CCAAATGTTTTATTTTTGCC+GGG | + | chr3_1:21856815-21856834 | Msa0352640:CDS | 30.0% |
| ! | GGTAAATAACTTGCATTGTT+TGG | + | chr3_1:21857096-21857115 | Msa0352640:intron | 30.0% |
| TGTTTGCTCAAATAGTATAC+TGG | + | chr3_1:21857150-21857169 | Msa0352640:intron | 30.0% | |
| AGTATACTGGAAAATGTTCT+TGG | + | chr3_1:21857163-21857182 | Msa0352640:intron | 30.0% | |
| TTGTTTATCCAAACAAGGTT+AGG | + | chr3_1:21857469-21857488 | Msa0352640:intron | 30.0% | |
| TATATTGTAGGCAATTCACT+AGG | + | chr3_1:21857713-21857732 | Msa0352640:CDS | 30.0% | |
| TCTTTATATTGGAAGGTAGA+GGG | - | chr3_1:21857886-21857905 | None:intergenic | 30.0% | |
| TTCTTTATATTGGAAGGTAG+AGG | - | chr3_1:21857887-21857906 | None:intergenic | 30.0% | |
| TCGCAAATAAATGACTACAT+TGG | - | chr3_1:21858032-21858051 | None:intergenic | 30.0% | |
| GAAACAAATTAACAAGAGTC+AGG | - | chr3_1:21858136-21858155 | None:intergenic | 30.0% | |
| !! | GTTAATTTGTTTCCTTTAGG+TGG | + | chr3_1:21858143-21858162 | Msa0352640:intron | 30.0% |
| GTAAACCTGATTAAGTACAT+CGG | - | chr3_1:21858197-21858216 | None:intergenic | 30.0% | |
| TACATGAATACATGTGTTGA+TGG | + | chr3_1:21858389-21858408 | Msa0352640:intron | 30.0% | |
| !!! | ATACATGTGTTGATGGTTTT+TGG | + | chr3_1:21858396-21858415 | Msa0352640:intron | 30.0% |
| !!! | TACATGTGTTGATGGTTTTT+GGG | + | chr3_1:21858397-21858416 | Msa0352640:intron | 30.0% |
| ! | ACCTTACAAGCTAATTTTGT+AGG | + | chr3_1:21858717-21858736 | Msa0352640:intron | 30.0% |
| ! | CCTTACAAGCTAATTTTGTA+GGG | + | chr3_1:21858718-21858737 | Msa0352640:intron | 30.0% |
| TAAATATTCAGTGCGCAAAA+AGG | - | chr3_1:21858847-21858866 | None:intergenic | 30.0% | |
| AAAGAACTAAACAATGAGGA+AGG | - | chr3_1:21858930-21858949 | None:intergenic | 30.0% | |
| GTCATAAATTTCTTACTTCG+TGG | + | chr3_1:21858999-21859018 | Msa0352640:CDS | 30.0% | |
| TAAATTTCTTACTTCGTGGA+TGG | + | chr3_1:21859003-21859022 | Msa0352640:CDS | 30.0% | |
| ! | TGGACTTGGAATAGAATTTT+AGG | - | chr3_1:21859202-21859221 | None:intergenic | 30.0% |
| AAAATTCTATTCCAAGTCCA+AGG | + | chr3_1:21859202-21859221 | Msa0352640:CDS | 30.0% | |
| ! | CAAAGTGGATTTATATCTGA+TGG | - | chr3_1:21859268-21859287 | None:intergenic | 30.0% |
| AGAAAAGACAATGTACAAAG+TGG | - | chr3_1:21859283-21859302 | None:intergenic | 30.0% | |
| TAAGATTAAGAGCAGATCCA+AGG | - | chr3_1:21856022-21856041 | None:intergenic | 35.0% | |
| ! | GGAGAATCATTTTCTGTTGT+TGG | + | chr3_1:21856313-21856332 | Msa0352640:five_prime_UTR | 35.0% |
| GAAAAGGGTAATCAACAAAG+TGG | + | chr3_1:21856530-21856549 | Msa0352640:CDS | 35.0% | |
| ! | GTAATCAACAAAGTGGGTTT+AGG | + | chr3_1:21856537-21856556 | Msa0352640:CDS | 35.0% |
| !! | AGGTCAAAACGTGTTTTTGA+AGG | + | chr3_1:21856557-21856576 | Msa0352640:CDS | 35.0% |
| GATGAAGGAAGAGATATTGT+AGG | + | chr3_1:21856641-21856660 | Msa0352640:CDS | 35.0% | |
| TGAAGGAAGAGATATTGTAG+GGG | + | chr3_1:21856643-21856662 | Msa0352640:CDS | 35.0% | |
| CCCGGCAAAAATAAAACATT+TGG | - | chr3_1:21856818-21856837 | None:intergenic | 35.0% | |
| !!! | GTTTTATTTTTGCCGGGTTT+CGG | + | chr3_1:21856821-21856840 | Msa0352640:CDS | 35.0% |
| TCATTATGAGAAGCAGTTGA+TGG | + | chr3_1:21856856-21856875 | Msa0352640:CDS | 35.0% | |
| !! | TTGTGTATTCGGTTGATTTG+TGG | + | chr3_1:21857044-21857063 | Msa0352640:CDS | 35.0% |
| ATTTGTGGCAAGATCAAGTT+CGG | + | chr3_1:21857059-21857078 | Msa0352640:CDS | 35.0% | |
| ! | CAAATTTGCTTGTTCCTATG+TGG | + | chr3_1:21857186-21857205 | Msa0352640:intron | 35.0% |
| ! | GACTGTTTGGGATAACTTAT+AGG | + | chr3_1:21857320-21857339 | Msa0352640:intron | 35.0% |
| ACAAATTCGTTACAGGTCAT+TGG | + | chr3_1:21857680-21857699 | Msa0352640:intron | 35.0% | |
| GAATTGCCTACAATATAGAC+TGG | - | chr3_1:21857710-21857729 | None:intergenic | 35.0% | |
| TGCTATCCTCATTTAGTGAA+AGG | + | chr3_1:21857764-21857783 | Msa0352640:CDS | 35.0% | |
| GTTACACCTTTCACTAAATG+AGG | - | chr3_1:21857773-21857792 | None:intergenic | 35.0% | |
| ! | TGCTTAATGCAACACCTTTT+TGG | + | chr3_1:21857795-21857814 | Msa0352640:CDS | 35.0% |
| ! | GCTTAATGCAACACCTTTTT+GGG | + | chr3_1:21857796-21857815 | Msa0352640:CDS | 35.0% |
| ! | CTTAATGCAACACCTTTTTG+GGG | + | chr3_1:21857797-21857816 | Msa0352640:CDS | 35.0% |
| ! | TTAATGCAACACCTTTTTGG+GGG | + | chr3_1:21857798-21857817 | Msa0352640:CDS | 35.0% |
| ! | ACTTGCCAAAGTATTTCCAT+GGG | + | chr3_1:21857850-21857869 | Msa0352640:CDS | 35.0% |
| !! | TTACAGAGTTGGTGTAAGTA+TGG | + | chr3_1:21857909-21857928 | Msa0352640:intron | 35.0% |
| ! | ACTAATTTTCTCCCACCTAA+AGG | - | chr3_1:21858158-21858177 | None:intergenic | 35.0% |
| ! | AGTACATCGGCAATACTTTT+CGG | - | chr3_1:21858184-21858203 | None:intergenic | 35.0% |
| TATTGCCGATGTACTTAATC+AGG | + | chr3_1:21858189-21858208 | Msa0352640:CDS | 35.0% | |
| CGCAGATCATTCAATAAATG+TGG | + | chr3_1:21858216-21858235 | Msa0352640:CDS | 35.0% | |
| !!! | ACATGTGTTGATGGTTTTTG+GGG | + | chr3_1:21858398-21858417 | Msa0352640:intron | 35.0% |
| TTTCCATACATGAGGCAAAT+AGG | - | chr3_1:21858457-21858476 | None:intergenic | 35.0% | |
| ! | GATCTTCTTTTCCATACATG+AGG | - | chr3_1:21858465-21858484 | None:intergenic | 35.0% |
| TGTATGGAAAAGAAGATCCT+TGG | + | chr3_1:21858467-21858486 | Msa0352640:CDS | 35.0% | |
| GTATGGAAAAGAAGATCCTT+GGG | + | chr3_1:21858468-21858487 | Msa0352640:CDS | 35.0% | |
| ! | ATTTGATAATACGGAGCTTC+AGG | - | chr3_1:21858532-21858551 | None:intergenic | 35.0% |
| ATATGTTAAGAGCTGCACAT+TGG | + | chr3_1:21858646-21858665 | Msa0352640:intron | 35.0% | |
| CAACTTATAAACTCACATCC+AGG | - | chr3_1:21858685-21858704 | None:intergenic | 35.0% | |
| CTGGATGTGAGTTTATAAGT+TGG | + | chr3_1:21858683-21858702 | Msa0352640:intron | 35.0% | |
| !! | CCCTACAAAATTAGCTTGTA+AGG | - | chr3_1:21858721-21858740 | None:intergenic | 35.0% |
| ! | TTTTGTAGGGTTGAGTTAAG+CGG | + | chr3_1:21858731-21858750 | Msa0352640:intron | 35.0% |
| ATTAGAAACCTAGAGTCTGA+TGG | + | chr3_1:21859026-21859045 | Msa0352640:CDS | 35.0% | |
| CTAACTCCCTTTCAATAGTT+TGG | - | chr3_1:21859094-21859113 | None:intergenic | 35.0% | |
| GTAGTTGAATCTCAATGAGA+TGG | + | chr3_1:21859230-21859249 | Msa0352640:exon | 35.0% | |
| ! | AGTGGATTTATATCTGATGG+TGG | - | chr3_1:21859265-21859284 | None:intergenic | 35.0% |
| !! | GGAATCAAAACCTTTGAAGC+AGG | - | chr3_1:21856677-21856696 | None:intergenic | 40.0% |
| !!! | GCTTCAAAGGTTTTGATTCC+TGG | + | chr3_1:21856677-21856696 | Msa0352640:CDS | 40.0% |
| !!! | GGTTTTGATTCCTGGTTTAC+CGG | + | chr3_1:21856685-21856704 | Msa0352640:CDS | 40.0% |
| !! | GAGAAGCAGTTGATGGATTT+AGG | + | chr3_1:21856863-21856882 | Msa0352640:CDS | 40.0% |
| !!! | TAGGTCGTGATTTTCGAGTT+TGG | + | chr3_1:21856882-21856901 | Msa0352640:CDS | 40.0% |
| !!! | AGGTCGTGATTTTCGAGTTT+GGG | + | chr3_1:21856883-21856902 | Msa0352640:CDS | 40.0% |
| !!! | TTGGGGTTTTGGAGATGAAA+CGG | + | chr3_1:21857003-21857022 | Msa0352640:CDS | 40.0% |
| AGTTCGGTACTTCATTGAAG+AGG | + | chr3_1:21857075-21857094 | Msa0352640:CDS | 40.0% | |
| CCTAGAGAGCTTATCGAAAT+AGG | - | chr3_1:21857380-21857399 | None:intergenic | 40.0% | |
| CCTATTTCGATAAGCTCTCT+AGG | + | chr3_1:21857377-21857396 | Msa0352640:intron | 40.0% | |
| GGTGAACCAGTCTATATTGT+AGG | + | chr3_1:21857701-21857720 | Msa0352640:CDS | 40.0% | |
| ATTGTAGGCAATTCACTAGG+AGG | + | chr3_1:21857716-21857735 | Msa0352640:CDS | 40.0% | |
| TTTGGAAGAAACCCCCAAAA+AGG | - | chr3_1:21857812-21857831 | None:intergenic | 40.0% | |
| ! | CCAGGAGATTTTACTGGATT+TGG | - | chr3_1:21857830-21857849 | None:intergenic | 40.0% |
| CCAAATCCAGTAAAATCTCC+TGG | + | chr3_1:21857827-21857846 | Msa0352640:CDS | 40.0% | |
| ! | GACTTGCCAAAGTATTTCCA+TGG | + | chr3_1:21857849-21857868 | Msa0352640:CDS | 40.0% |
| TCAATTATGTTTGCTCCCCA+AGG | + | chr3_1:21858301-21858320 | Msa0352640:CDS | 40.0% | |
| !! | CCTTGATAATGTTTCGCTGA+AGG | - | chr3_1:21858335-21858354 | None:intergenic | 40.0% |
| CCTTCAGCGAAACATTATCA+AGG | + | chr3_1:21858332-21858351 | Msa0352640:CDS | 40.0% | |
| ! | TTTTAGATGTCGAGCGAACA+AGG | + | chr3_1:21858429-21858448 | Msa0352640:intron | 40.0% |
| TTAACCTGAAGTCCCCATAT+AGG | - | chr3_1:21858499-21858518 | None:intergenic | 40.0% | |
| ! | GGGACTTCAGGTTAAAAGAA+AGG | + | chr3_1:21858504-21858523 | Msa0352640:CDS | 40.0% |
| !! | GCAGGGCTGATTTGATAATA+CGG | - | chr3_1:21858541-21858560 | None:intergenic | 40.0% |
| TATTATCAAATCAGCCCTGC+TGG | + | chr3_1:21858541-21858560 | Msa0352640:CDS | 40.0% | |
| GTTAGCAATTGCATACCTCA+GGG | - | chr3_1:21858588-21858607 | None:intergenic | 40.0% | |
| AGTTAGCAATTGCATACCTC+AGG | - | chr3_1:21858589-21858608 | None:intergenic | 40.0% | |
| ! | ATTGGATTTGAGATAGAGCC+TGG | + | chr3_1:21858664-21858683 | Msa0352640:intron | 40.0% |
| AAAAGGAAATGCCGGATAGT+TGG | - | chr3_1:21858830-21858849 | None:intergenic | 40.0% | |
| ! | GTGTCTATTTCTTCAAGCAG+AGG | - | chr3_1:21859065-21859084 | None:intergenic | 40.0% |
| ATTCTATTCCAAGTCCAAGG+AGG | + | chr3_1:21859205-21859224 | Msa0352640:CDS | 40.0% | |
| ! | CGGTTTTTCTTGGCTCATAG+AGG | + | chr3_1:21855954-21855973 | Msa0352640:five_prime_UTR | 45.0% |
| ! | GGTTGATGTACCTGCTTCAA+AGG | + | chr3_1:21856664-21856683 | Msa0352640:CDS | 45.0% |
| TTGGATTCATCCGGTAAACC+AGG | - | chr3_1:21856698-21856717 | None:intergenic | 45.0% | |
| GGTTTACCGGATGAATCCAA+CGG | + | chr3_1:21856698-21856717 | Msa0352640:CDS | 45.0% | |
| GATTCACCGTTGGATTCATC+CGG | - | chr3_1:21856707-21856726 | None:intergenic | 45.0% | |
| GATGAATCCAACGGTGAATC+CGG | + | chr3_1:21856707-21856726 | Msa0352640:CDS | 45.0% | |
| ACAACTACTTATCACCGCAC+CGG | - | chr3_1:21856729-21856748 | None:intergenic | 45.0% | |
| GAAAGCTGGGTGTGAAAATG+TGG | + | chr3_1:21856787-21856806 | Msa0352640:CDS | 45.0% | |
| AAAGAACCAACACCGAAACC+CGG | - | chr3_1:21856836-21856855 | None:intergenic | 45.0% | |
| !!! | TGATTTTCGAGTTTGGGCGT+TGG | + | chr3_1:21856889-21856908 | Msa0352640:CDS | 45.0% |
| !!! | GTTTGGGCGTTGGATTTTCT+AGG | + | chr3_1:21856899-21856918 | Msa0352640:CDS | 45.0% |
| !!! | GCGTTGGATTTTCTAGGACA+AGG | + | chr3_1:21856905-21856924 | Msa0352640:CDS | 45.0% |
| AAGGGAGCAGGATCTTCAAA+AGG | - | chr3_1:21856941-21856960 | None:intergenic | 45.0% | |
| ! | CTCCCTTGTCTAAGGTAGAA+GGG | + | chr3_1:21856954-21856973 | Msa0352640:CDS | 45.0% |
| ! | TCCCTTGTCTAAGGTAGAAG+GGG | + | chr3_1:21856955-21856974 | Msa0352640:CDS | 45.0% |
| ACCCCTTCTACCTTAGACAA+GGG | - | chr3_1:21856959-21856978 | None:intergenic | 45.0% | |
| AACCCCTTCTACCTTAGACA+AGG | - | chr3_1:21856960-21856979 | None:intergenic | 45.0% | |
| GAGTGGAAATGTTTCGCCTT+GGG | + | chr3_1:21856985-21857004 | Msa0352640:CDS | 45.0% | |
| AGTGGAAATGTTTCGCCTTG+GGG | + | chr3_1:21856986-21857005 | Msa0352640:CDS | 45.0% | |
| ! | AATGTTTCGCCTTGGGGTTT+TGG | + | chr3_1:21856992-21857011 | Msa0352640:CDS | 45.0% |
| GTTTCATCTCCAAAACCCCA+AGG | - | chr3_1:21857004-21857023 | None:intergenic | 45.0% | |
| TTGGAGATGAAACGGAACCA+TGG | + | chr3_1:21857011-21857030 | Msa0352640:CDS | 45.0% | |
| TGGAGATGAAACGGAACCAT+GGG | + | chr3_1:21857012-21857031 | Msa0352640:CDS | 45.0% | |
| TGTCCACTAGCATAAGCACT+TGG | + | chr3_1:21857295-21857314 | Msa0352640:intron | 45.0% | |
| GTCCACTAGCATAAGCACTT+GGG | + | chr3_1:21857296-21857315 | Msa0352640:intron | 45.0% | |
| TAAGCACTTGGGAGACTGTT+TGG | + | chr3_1:21857307-21857326 | Msa0352640:intron | 45.0% | |
| AAGCACTTGGGAGACTGTTT+GGG | + | chr3_1:21857308-21857327 | Msa0352640:intron | 45.0% | |
| TCCAAACAAGGTTAGGTCAG+TGG | + | chr3_1:21857476-21857495 | Msa0352640:intron | 45.0% | |
| TCCACTGACCTAACCTTGTT+TGG | - | chr3_1:21857480-21857499 | None:intergenic | 45.0% | |
| ! | GCAAGTCCAGGAGATTTTAC+TGG | - | chr3_1:21857836-21857855 | None:intergenic | 45.0% |
| GGAAATACTTTGGCAAGTCC+AGG | - | chr3_1:21857848-21857867 | None:intergenic | 45.0% | |
| TAGATATGATAAGGGGCTCC+TGG | - | chr3_1:21858104-21858123 | None:intergenic | 45.0% | |
| CTGAAGGATAACTCTCCTTG+GGG | - | chr3_1:21858319-21858338 | None:intergenic | 45.0% | |
| GCTGAAGGATAACTCTCCTT+GGG | - | chr3_1:21858320-21858339 | None:intergenic | 45.0% | |
| GTGCCTATTTGCCTCATGTA+TGG | + | chr3_1:21858451-21858470 | Msa0352640:CDS | 45.0% | |
| ATCCTTGGGTGACACCTATA+TGG | + | chr3_1:21858482-21858501 | Msa0352640:CDS | 45.0% | |
| TCCTTGGGTGACACCTATAT+GGG | + | chr3_1:21858483-21858502 | Msa0352640:CDS | 45.0% | |
| AGAGTGTATCCAAGATCCGT+TGG | + | chr3_1:21858785-21858804 | Msa0352640:intron | 45.0% | |
| GAGTGTATCCAAGATCCGTT+GGG | + | chr3_1:21858786-21858805 | Msa0352640:intron | 45.0% | |
| !! | ATAGTTGGTGACCCAATAGC+AGG | - | chr3_1:21858815-21858834 | None:intergenic | 45.0% |
| CTATTGGGTCACCAACTATC+CGG | + | chr3_1:21858816-21858835 | Msa0352640:intron | 45.0% | |
| AGTGCGCAAAAAGGAAATGC+CGG | - | chr3_1:21858838-21858857 | None:intergenic | 45.0% | |
| TTGCCTCTAGTGTCTCACTT+TGG | + | chr3_1:21859159-21859178 | Msa0352640:CDS | 45.0% | |
| TGCCTCTAGTGTCTCACTTT+GGG | + | chr3_1:21859160-21859179 | Msa0352640:CDS | 45.0% | |
| AGATTCAACTACCACCTCCT+TGG | - | chr3_1:21859222-21859241 | None:intergenic | 45.0% | |
| !! | TTTTTGCCGGGTTTCGGTGT+TGG | + | chr3_1:21856827-21856846 | Msa0352640:CDS | 50.0% |
| AGATCCTGCTCCCTTGTCTA+AGG | + | chr3_1:21856946-21856965 | Msa0352640:CDS | 50.0% | |
| TCTACCTTAGACAAGGGAGC+AGG | - | chr3_1:21856953-21856972 | None:intergenic | 50.0% | |
| ! | GCTCCCTTGTCTAAGGTAGA+AGG | + | chr3_1:21856953-21856972 | Msa0352640:CDS | 50.0% |
| GTAGAAGGGGTTATGTCGAG+TGG | + | chr3_1:21856968-21856987 | Msa0352640:CDS | 50.0% | |
| CGAGTGGAAATGTTTCGCCT+TGG | + | chr3_1:21856984-21857003 | Msa0352640:CDS | 50.0% | |
| GGCGACTGAGCTTGTGTATT+CGG | + | chr3_1:21857033-21857052 | Msa0352640:CDS | 50.0% | |
| CTCCCAAGTGCTTATGCTAG+TGG | - | chr3_1:21857301-21857320 | None:intergenic | 50.0% | |
| ! | GCCAAAGTATTTCCATGGGC+CGG | + | chr3_1:21857854-21857873 | Msa0352640:CDS | 50.0% |
| TCCGGCCCATGGAAATACTT+TGG | - | chr3_1:21857858-21857877 | None:intergenic | 50.0% | |
| GGAAGGTAGAGGGAATGTTC+CGG | - | chr3_1:21857876-21857895 | None:intergenic | 50.0% | |
| ACTGCTGATAGTACACCTCC+AGG | + | chr3_1:21858083-21858102 | Msa0352640:intron | 50.0% | |
| ATATGATAAGGGGCTCCTGG+AGG | - | chr3_1:21858101-21858120 | None:intergenic | 50.0% | |
| CGCTGAAGGATAACTCTCCT+TGG | - | chr3_1:21858321-21858340 | None:intergenic | 50.0% | |
| CCTTGGGTGACACCTATATG+GGG | + | chr3_1:21858484-21858503 | Msa0352640:CDS | 50.0% | |
| GACACCTATATGGGGACTTC+AGG | + | chr3_1:21858492-21858511 | Msa0352640:CDS | 50.0% | |
| CCTCAGGGACTTCATCATGA+GGG | - | chr3_1:21858573-21858592 | None:intergenic | 50.0% | |
| ACCTCAGGGACTTCATCATG+AGG | - | chr3_1:21858574-21858593 | None:intergenic | 50.0% | |
| AGAGAGAGCCATCAGACTCT+AGG | - | chr3_1:21859037-21859056 | None:intergenic | 50.0% | |
| GTCCCAAAGTGAGACACTAG+AGG | - | chr3_1:21859165-21859184 | None:intergenic | 50.0% | |
| !! | CTAGTGTCTCACTTTGGGAC+AGG | + | chr3_1:21859165-21859184 | Msa0352640:CDS | 50.0% |
| CTATTCCAAGTCCAAGGAGG+TGG | + | chr3_1:21859208-21859227 | Msa0352640:CDS | 50.0% | |
| AACTACCACCTCCTTGGACT+TGG | - | chr3_1:21859216-21859235 | None:intergenic | 50.0% | |
| ATCCAACGGTGAATCCGGTG+CGG | + | chr3_1:21856712-21856731 | Msa0352640:CDS | 55.0% | |
| TACACAAGCTCAGTCGCCCA+TGG | - | chr3_1:21857031-21857050 | None:intergenic | 55.0% | |
| CACAAGACATCCTGCTGCTG+CGG | + | chr3_1:21858267-21858286 | Msa0352640:CDS | 55.0% | |
| ! | CCCCATATAGGTGTCACCCA+AGG | - | chr3_1:21858487-21858506 | None:intergenic | 55.0% |
| CCCTCATGATGAAGTCCCTG+AGG | + | chr3_1:21858570-21858589 | Msa0352640:CDS | 55.0% | |
| !! | GTTGGTGACCCAATAGCAGG+TGG | - | chr3_1:21858812-21858831 | None:intergenic | 55.0% |
| AGAGGGAATGTTCCGGCCCA+TGG | - | chr3_1:21857869-21857888 | None:intergenic | 60.0% | |
| CGCAGCAGCAGGATGTCTTG+TGG | - | chr3_1:21858269-21858288 | None:intergenic | 60.0% | |
| CATGAGGGCAGTGACCAGCA+GGG | - | chr3_1:21858558-21858577 | None:intergenic | 60.0% | |
| TCATGAGGGCAGTGACCAGC+AGG | - | chr3_1:21858559-21858578 | None:intergenic | 60.0% | |
| TCCGTTGGGCCACCTGCTAT+TGG | + | chr3_1:21858800-21858819 | Msa0352640:intron | 60.0% | |
| CCCAATAGCAGGTGGCCCAA+CGG | - | chr3_1:21858804-21858823 | None:intergenic | 60.0% | |
| CCGTTGGGCCACCTGCTATT+GGG | + | chr3_1:21858801-21858820 | Msa0352640:intron | 60.0% | |
| CACCGCACCGGATTCACCGT+TGG | - | chr3_1:21856717-21856736 | None:intergenic | 65.0% | |
| GCAAATGAGGCCGCAGCAGC+AGG | - | chr3_1:21858280-21858299 | None:intergenic | 65.0% | |
| GCAGGTGGCCCAACGGATCT+TGG | - | chr3_1:21858797-21858816 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 21855907 | 21859487 | 21855907 | ID=Msa0352640;Name=Msa0352640 |
| chr3_1 | mRNA | 21855907 | 21859487 | 21855907 | ID=Msa0352640-mRNA-1;Parent=Msa0352640;Name=Msa0352640-mRNA-1;_AED=0.10;_eAED=0.10;_QI=256|1|1|1|0.8|0.66|6|240|519 |
| chr3_1 | exon | 21855907 | 21856088 | 21855907 | ID=Msa0352640-mRNA-1:exon:4919;Parent=Msa0352640-mRNA-1 |
| chr3_1 | exon | 21856288 | 21857096 | 21856288 | ID=Msa0352640-mRNA-1:exon:4920;Parent=Msa0352640-mRNA-1 |
| chr3_1 | exon | 21857695 | 21857921 | 21857695 | ID=Msa0352640-mRNA-1:exon:4921;Parent=Msa0352640-mRNA-1 |
| chr3_1 | exon | 21858162 | 21858353 | 21858162 | ID=Msa0352640-mRNA-1:exon:4922;Parent=Msa0352640-mRNA-1 |
| chr3_1 | exon | 21858435 | 21858591 | 21858435 | ID=Msa0352640-mRNA-1:exon:4923;Parent=Msa0352640-mRNA-1 |
| chr3_1 | exon | 21858999 | 21859487 | 21858999 | ID=Msa0352640-mRNA-1:exon:4924;Parent=Msa0352640-mRNA-1 |
| chr3_1 | five_prime_UTR | 21855907 | 21856088 | 21855907 | ID=Msa0352640-mRNA-1:five_prime_utr;Parent=Msa0352640-mRNA-1 |
| chr3_1 | five_prime_UTR | 21856288 | 21856361 | 21856288 | ID=Msa0352640-mRNA-1:five_prime_utr;Parent=Msa0352640-mRNA-1 |
| chr3_1 | CDS | 21856362 | 21857096 | 21856362 | ID=Msa0352640-mRNA-1:cds;Parent=Msa0352640-mRNA-1 |
| chr3_1 | CDS | 21857695 | 21857921 | 21857695 | ID=Msa0352640-mRNA-1:cds;Parent=Msa0352640-mRNA-1 |
| chr3_1 | CDS | 21858162 | 21858353 | 21858162 | ID=Msa0352640-mRNA-1:cds;Parent=Msa0352640-mRNA-1 |
| chr3_1 | CDS | 21858435 | 21858591 | 21858435 | ID=Msa0352640-mRNA-1:cds;Parent=Msa0352640-mRNA-1 |
| chr3_1 | CDS | 21858999 | 21859247 | 21858999 | ID=Msa0352640-mRNA-1:cds;Parent=Msa0352640-mRNA-1 |
| chr3_1 | three_prime_UTR | 21859248 | 21859487 | 21859248 | ID=Msa0352640-mRNA-1:three_prime_utr;Parent=Msa0352640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
