AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0205670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0205670 MtrunA17_Chr2g0304061 92.447 331 21 2 1 330 1 328 6.50e-149 422
Msa0205670 MtrunA17_Chr3g0096451 48.993 149 60 4 95 242 62 195 2.87e-34 126
Msa0205670 MtrunA17_Chr5g0443331 49.315 146 47 4 109 249 75 198 1.10e-32 122
Msa0205670 MtrunA17_Chr7g0271411 47.368 171 74 5 84 242 77 243 1.96e-31 120
Msa0205670 MtrunA17_Chr1g0193131 45.545 202 81 6 56 238 307 498 2.08e-30 121
Msa0205670 MtrunA17_Chr8g0378361 48.819 127 60 3 153 278 23 145 1.20e-28 109
Msa0205670 MtrunA17_Chr8g0381081 53.125 96 43 2 160 253 57 152 1.92e-26 103
Msa0205670 MtrunA17_Chr8g0380231 60.000 80 28 2 169 247 26 102 8.37e-26 99.0
Msa0205670 MtrunA17_Chr5g0447651 55.814 86 36 2 160 243 30 115 8.78e-25 97.1
Msa0205670 MtrunA17_Chr4g0075031 51.000 100 47 2 160 257 382 481 1.34e-24 103
Msa0205670 MtrunA17_Chr8g0378371 54.945 91 39 1 155 245 28 116 2.03e-24 95.9
Msa0205670 MtrunA17_Chr8g0378621 51.000 100 47 2 145 242 349 448 3.74e-24 102
Msa0205670 MtrunA17_Chr4g0040911 42.424 132 67 3 148 277 25 149 2.94e-23 94.7
Msa0205670 MtrunA17_Chr8g0378381 48.810 84 42 1 160 242 32 115 2.01e-22 90.5
Msa0205670 MtrunA17_Chr1g0177171 50.505 99 46 3 147 242 392 490 1.08e-21 95.5
Msa0205670 MtrunA17_Chr1g0213651 48.810 84 42 1 160 242 276 359 1.40e-21 94.0
Msa0205670 MtrunA17_Chr3g0120401 48.276 87 44 1 160 245 157 243 2.56e-21 91.3
Msa0205670 MtrunA17_Chr4g0076131 47.253 91 46 2 155 243 23 113 3.30e-21 87.4
Msa0205670 MtrunA17_Chr3g0121271 45.918 98 51 2 154 249 356 453 1.19e-20 92.4
Msa0205670 MtrunA17_Chr8g0378401 50.617 81 39 1 157 236 29 109 1.61e-20 85.5
Msa0205670 MtrunA17_Chr1g0154991 45.882 85 45 1 160 243 20 104 2.21e-20 84.7
Msa0205670 MtrunA17_Chr1g0161011 50.000 88 42 2 160 245 361 448 5.36e-19 87.4
Msa0205670 MtrunA17_Chr5g0401301 52.326 86 38 3 160 242 329 414 6.26e-19 87.0
Msa0205670 MtrunA17_Chr8g0389741 48.235 85 42 2 160 242 368 452 9.58e-19 87.0
Msa0205670 MtrunA17_Chr5g0419121 49.296 71 35 1 160 229 22 92 1.25e-18 84.0
Msa0205670 MtrunA17_Chr4g0076141 50.000 80 38 2 159 236 12 91 1.35e-18 79.7
Msa0205670 MtrunA17_Chr6g0487261 43.678 87 46 2 159 242 368 454 3.51e-18 85.1
Msa0205670 MtrunA17_Chr5g0439251 45.833 96 42 3 160 245 382 477 4.22e-18 84.7
Msa0205670 MtrunA17_Chr4g0043511 42.391 92 52 1 159 249 419 510 5.75e-18 84.7
Msa0205670 MtrunA17_Chr4g0034901 46.154 91 47 2 159 247 374 464 6.22e-18 84.3
Msa0205670 MtrunA17_Chr5g0434591 48.193 83 41 2 160 240 360 442 1.25e-17 83.6
Msa0205670 MtrunA17_Chr4g0061401 44.828 87 46 2 157 242 21 106 2.94e-17 79.3
Msa0205670 MtrunA17_Chr4g0043151 48.052 77 39 1 154 229 15 91 8.24e-17 77.4
Msa0205670 MtrunA17_Chr3g0110371 47.059 85 43 2 160 242 361 445 1.05e-16 80.9
Msa0205670 MtrunA17_Chr3g0144531 35.345 116 60 3 135 247 356 459 9.14e-15 74.7
Msa0205670 MtrunA17_Chr7g0234821 43.529 85 46 2 160 242 374 458 3.97e-14 72.8
Msa0205670 MtrunA17_Chr8g0339191 40.000 85 49 2 160 242 374 458 7.08e-14 72.0
Msa0205670 MtrunA17_Chr2g0313891 40.404 99 57 2 146 243 16 113 2.91e-13 65.5
Msa0205670 MtrunA17_Chr7g0223961 37.209 86 53 1 158 242 363 448 4.32e-13 69.7
Msa0205670 MtrunA17_Chr4g0046311 44.304 79 42 2 160 236 373 451 2.40e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0205670 AT2G30933.1 58.947 95 38 1 156 249 78 172 5.39e-34 125
Msa0205670 AT1G09460.1 60.638 94 35 2 157 249 133 225 4.73e-30 117
Msa0205670 AT2G30933.2 60.976 82 31 1 156 236 78 159 5.84e-30 112
Msa0205670 AT2G30933.3 60.976 82 31 1 156 236 78 159 5.84e-30 112
Msa0205670 AT5G35740.1 52.747 91 38 4 157 243 27 116 1.27e-24 97.1
Msa0205670 AT4G13600.1 43.411 129 60 3 157 272 58 186 5.19e-24 98.6
Msa0205670 AT4G05430.1 47.778 90 45 2 160 247 23 112 3.80e-23 93.6
Msa0205670 AT4G05430.3 47.778 90 45 2 160 247 48 137 4.91e-23 94.4
Msa0205670 AT1G11820.2 49.000 100 49 2 160 257 381 480 2.76e-22 97.8
Msa0205670 AT1G18650.1 42.063 126 70 2 154 278 15 138 7.89e-22 91.3
Msa0205670 AT4G26830.2 50.588 85 40 2 160 242 371 455 1.01e-21 95.9
Msa0205670 AT4G26830.1 50.588 85 40 2 160 242 367 451 1.35e-21 95.5
Msa0205670 AT5G63250.1 45.652 92 46 2 157 244 39 130 1.42e-21 89.4
Msa0205670 AT2G05790.1 54.118 85 37 2 160 242 384 468 2.06e-21 95.1
Msa0205670 AT2G42930.1 47.727 88 45 1 160 247 40 126 2.17e-21 89.0
Msa0205670 AT4G34480.3 47.619 84 43 1 160 242 253 336 2.83e-21 94.0
Msa0205670 AT4G34480.1 47.619 84 43 1 160 242 364 447 3.33e-21 94.4
Msa0205670 AT1G18650.2 46.154 91 48 1 153 242 14 104 4.71e-21 87.8
Msa0205670 AT1G79480.2 45.977 87 46 1 157 242 307 393 7.00e-21 92.8
Msa0205670 AT1G79480.1 45.977 87 46 1 157 242 308 394 7.34e-21 92.8
Msa0205670 AT5G67460.1 48.864 88 43 2 157 242 290 377 1.16e-20 92.0
Msa0205670 AT5G55180.1 50.588 85 40 2 160 242 372 456 1.98e-20 92.0
Msa0205670 AT2G01630.1 50.588 85 40 2 160 242 360 444 4.53e-20 91.3
Msa0205670 AT1G66250.1 49.438 89 43 2 160 246 368 456 4.76e-20 91.3
Msa0205670 AT3G58100.1 47.191 89 45 2 160 246 41 129 6.42e-20 86.3
Msa0205670 AT5G24318.3 40.860 93 54 1 154 245 227 319 7.98e-20 89.0
Msa0205670 AT3G13560.4 34.759 187 118 3 83 267 285 469 8.21e-20 90.5
Msa0205670 AT3G13560.1 34.759 187 118 3 83 267 285 469 8.21e-20 90.5
Msa0205670 AT3G13560.2 34.759 187 118 3 83 267 285 469 8.21e-20 90.5
Msa0205670 AT3G13560.5 34.759 187 118 3 83 267 285 469 8.21e-20 90.5
Msa0205670 AT3G13560.3 34.759 187 118 3 83 267 285 469 8.21e-20 90.5
Msa0205670 AT2G04910.2 47.727 88 44 2 158 243 13 100 8.46e-20 83.6
Msa0205670 AT5G24318.1 40.860 93 54 1 154 245 366 458 9.65e-20 90.1
Msa0205670 AT4G05430.2 49.367 79 38 2 160 236 48 126 1.44e-19 83.6
Msa0205670 AT3G58100.2 47.191 89 45 2 160 246 117 205 3.62e-19 85.9
Msa0205670 AT4G29360.1 47.727 88 44 2 157 242 388 475 5.80e-19 88.2
Msa0205670 AT4G29360.2 47.727 88 44 2 157 242 398 485 6.08e-19 87.8
Msa0205670 AT5G63225.1 44.828 87 47 1 157 242 22 108 7.32e-19 81.3
Msa0205670 AT1G66855.1 43.023 86 47 2 160 243 26 111 1.01e-18 80.9
Msa0205670 AT1G66870.1 44.578 83 44 2 160 240 26 108 1.45e-18 80.5
Msa0205670 AT5G61130.1 42.400 125 70 2 154 277 15 138 1.50e-18 82.8
Msa0205670 AT1G66870.2 44.578 83 44 2 160 240 53 135 2.58e-18 80.5
Msa0205670 AT5G67460.2 50.000 82 39 2 157 236 290 371 2.73e-18 85.1
Msa0205670 AT5G56590.1 47.059 85 43 2 160 242 369 453 2.89e-18 85.9
Msa0205670 AT1G66852.1 42.683 82 46 1 160 240 26 107 3.35e-18 79.3
Msa0205670 AT2G16230.1 42.857 84 47 1 160 242 366 449 3.98e-18 85.5
Msa0205670 AT5G63240.1 42.391 92 49 2 157 244 37 128 5.07e-18 79.3
Msa0205670 AT1G11820.3 51.899 79 36 2 160 236 381 459 1.09e-17 84.0
Msa0205670 AT2G01630.3 50.633 79 37 2 160 236 360 438 1.28e-17 83.6
Msa0205670 AT5G55180.2 51.807 83 37 3 158 237 369 451 2.30e-17 83.2
Msa0205670 AT3G55430.1 35.922 103 55 2 151 242 347 449 5.49e-17 82.0
Msa0205670 AT1G26450.1 38.462 156 70 5 161 291 22 176 1.21e-16 77.4
Msa0205670 AT5G24318.2 41.667 84 48 1 154 236 366 449 2.55e-16 79.7
Msa0205670 AT1G69295.1 50.704 71 33 2 160 229 21 90 3.36e-16 77.0
Msa0205670 AT4G09462.1 37.079 89 55 1 157 244 26 114 5.67e-16 73.6
Msa0205670 AT1G69295.2 50.704 71 33 2 160 229 17 86 6.25e-16 75.9
Msa0205670 AT2G04910.1 46.914 81 41 2 158 236 13 93 1.54e-15 72.4
Msa0205670 AT4G09465.1 35.955 89 56 1 157 244 28 116 1.79e-15 72.0
Msa0205670 AT4G09464.1 35.955 89 56 1 157 244 28 116 2.14e-15 72.0
Msa0205670 AT4G09467.1 35.955 89 56 1 157 244 28 116 2.14e-15 72.0
Msa0205670 AT5G08000.1 42.529 87 49 1 157 242 18 104 6.22e-15 72.8
Msa0205670 AT5G63230.1 39.759 83 49 1 159 240 25 107 1.08e-14 69.7
Msa0205670 AT5G08000.2 42.857 84 47 1 160 242 40 123 2.27e-14 71.6
Msa0205670 AT3G07320.1 44.706 85 45 2 160 242 371 455 3.32e-14 73.6
Msa0205670 AT4G16165.1 38.372 86 51 2 160 243 26 111 3.82e-14 68.2
Msa0205670 AT4G09090.1 37.079 89 55 1 157 244 28 116 5.90e-14 67.8
Msa0205670 AT3G23770.1 43.529 85 46 2 160 242 387 471 9.49e-14 72.4
Msa0205670 AT2G29735.1 42.697 89 48 2 155 240 26 114 1.47e-13 67.0
Msa0205670 AT2G03505.4 34.000 100 49 2 157 256 18 100 1.54e-13 68.2
Msa0205670 AT2G03505.1 34.000 100 49 2 157 256 18 100 1.54e-13 68.2
Msa0205670 AT2G03505.2 34.000 100 49 2 157 256 18 100 1.54e-13 68.2
Msa0205670 AT4G09466.1 32.967 91 60 1 155 244 26 116 1.86e-13 66.6
Msa0205670 AT2G03505.3 34.000 100 49 2 157 256 18 100 4.32e-13 65.5
Msa0205670 AT5G53600.1 39.286 84 49 2 160 242 29 111 1.10e-12 64.3
Msa0205670 AT5G53610.1 41.667 84 47 2 160 242 28 110 1.10e-12 64.3
Msa0205670 AT2G39640.1 35.294 85 54 1 157 240 457 541 1.14e-12 68.9
Msa0205670 AT2G39640.1 35.294 85 54 1 157 240 356 440 1.53e-11 65.5
Msa0205670 AT2G19440.2 42.045 88 43 5 159 242 361 444 1.49e-12 68.6
Msa0205670 AT2G19440.1 42.045 88 43 5 159 242 361 444 1.49e-12 68.6
Msa0205670 AT1G13830.1 39.437 71 42 1 160 229 21 91 1.33e-11 63.2
Msa0205670 AT1G13830.2 39.437 71 42 1 160 229 35 105 1.60e-11 63.5
Msa0205670 AT1G78520.1 38.824 85 50 2 160 243 32 115 2.67e-11 60.5

Find 131 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGATCTTTCAAAGTATT+TGG 0.103855 2_1:+32691834 None:intergenic
GGGCTTGTTGTGCCTGTGTC+TGG 0.191361 2_1:+32692188 None:intergenic
TTTAGCATTAGCAGATTTAT+AGG 0.211938 2_1:-32690894 Msa0205670:three_prime_UTR
GAAGTTGATGAGGCTATATT+AGG 0.226288 2_1:+32691178 None:intergenic
CCTCCTGTTCCTGGTGTTGT+AGG 0.230252 2_1:+32692284 None:intergenic
AAATTCTCACCTTGTTGTTT+TGG 0.240571 2_1:+32691439 None:intergenic
TTGGATTATGCTTGTGGATA+TGG 0.261053 2_1:-32691900 Msa0205670:CDS
GCACCTACAAGTTGTGTATT+TGG 0.264956 2_1:-32691774 Msa0205670:CDS
AGATTATCTATTTCAGATAA+AGG 0.268892 2_1:-32690822 Msa0205670:three_prime_UTR
ATAAATCTGCTAATGCTAAA+TGG 0.271823 2_1:+32690897 None:intergenic
TGCAAGAATTAATTCATATA+TGG 0.278177 2_1:+32690963 None:intergenic
AGCTGCAGAGACTACTTTAA+AGG 0.280134 2_1:-32691928 Msa0205670:CDS
TGAATCTTCTCTTAATCTTA+TGG 0.280733 2_1:+32692355 None:intergenic
GGGCTTGTTGGGTTTGAGTA+TGG 0.288454 2_1:+32692068 None:intergenic
CTATGTCTTTCCCTCTGTTC+AGG 0.289191 2_1:-32693364 Msa0205670:intron
GACTACTTTAAAGGTAGCTT+TGG 0.305217 2_1:-32691919 Msa0205670:CDS
CTTGTTGGAGTTGTTGTAGT+TGG 0.311943 2_1:+32692047 None:intergenic
GCATAGCTATTGATTGAATA+TGG 0.315916 2_1:-32690740 Msa0205670:three_prime_UTR
TATTACACCGACCCTTTGAT+TGG 0.320712 2_1:-32691047 Msa0205670:three_prime_UTR
GTTTGTCCAGTACTTGTATC+AGG 0.327363 2_1:+32692221 None:intergenic
GGTGTTGTGGGAGTCACATT+TGG 0.328603 2_1:+32692023 None:intergenic
GAACTTGGTGGGTTTGAGTA+TGG 0.330703 2_1:+32692098 None:intergenic
AGAAATTAAACCTCAAGAAA+TGG 0.330880 2_1:-32693419 Msa0205670:exon
GAGGTTGGTGGGTTTGAGTA+TGG 0.333201 2_1:+32692158 None:intergenic
GATAACTAAATATTATTTCA+TGG 0.335055 2_1:+32690708 None:intergenic
CATGATCTTTCAAAGTATTT+GGG 0.337641 2_1:+32691835 None:intergenic
TAAGGATTTCCTCCTGTTCC+TGG 0.340078 2_1:+32692275 None:intergenic
GGGTTTGAGTATGGATTTGT+TGG 0.343138 2_1:+32692167 None:intergenic
GTTGTTGTAGTTGGGCTTGT+TGG 0.343594 2_1:+32692056 None:intergenic
ATTGGAATTCACGGTCTTCC+AGG 0.347155 2_1:-32691029 Msa0205670:three_prime_UTR
GTTGTGCCTGTGTCTGGGCT+TGG 0.347378 2_1:+32692194 None:intergenic
GATTATCTATTTCAGATAAA+GGG 0.350069 2_1:-32690821 Msa0205670:three_prime_UTR
GGCTTGTTGTGCCTGTGTCT+GGG 0.359856 2_1:+32692189 None:intergenic
TGCCTGTGTCTGGGCTTGGT+GGG 0.363479 2_1:+32692198 None:intergenic
CCTCCAAATACACAACTTGT+AGG 0.370834 2_1:+32691771 None:intergenic
AGAAGCTGGTGGGTTTGAAT+AGG 0.373420 2_1:+32692127 None:intergenic
TTGTTGTAGTTGGGCTTGTT+GGG 0.380851 2_1:+32692057 None:intergenic
GGAGATGTTGGGTTTATAGT+AGG 0.382143 2_1:+32692251 None:intergenic
GGAGTCACATTTGGGCTTGT+TGG 0.384264 2_1:+32692032 None:intergenic
GTTTATGAGCAATGTTTAAG+AGG 0.385649 2_1:+32693469 None:intergenic
GTGCCTGTGTCTGGGCTTGG+TGG 0.388453 2_1:+32692197 None:intergenic
GTTGGGTTTATAGTAGGATA+AGG 0.392906 2_1:+32692257 None:intergenic
CCACCAGATGATCCTGTTCC+TGG 0.395410 2_1:+32692002 None:intergenic
GGATCATCTGGTGGTGGTGG+TGG 0.399836 2_1:-32691993 Msa0205670:CDS
AAGTTGATGAGGCTATATTA+GGG 0.410837 2_1:+32691179 None:intergenic
TCAGGTGGTTGAGGAGATGT+TGG 0.416066 2_1:+32692239 None:intergenic
GGAGGATCTTCATCAGTCTA+TGG 0.417326 2_1:-32691220 Msa0205670:CDS
GTGTTGTGGGAGTCACATTT+GGG 0.421820 2_1:+32692024 None:intergenic
CTCCTGTTCCTGGTGTTGTA+GGG 0.421839 2_1:+32692285 None:intergenic
CAGGTGGTTGAGGAGATGTT+GGG 0.426565 2_1:+32692240 None:intergenic
GAAATTAAACCTCAAGAAAT+GGG 0.433845 2_1:-32693418 Msa0205670:exon
TTGTTGGAGTTGTTGTAGTT+GGG 0.434457 2_1:+32692048 None:intergenic
GCCTGTGTCTGGGCTTGGTG+GGG 0.436540 2_1:+32692199 None:intergenic
TGAAATCTTGCAAAATCTCC+TGG 0.440152 2_1:+32691011 None:intergenic
GAAGCTGGTGGGTTTGAATA+GGG 0.441448 2_1:+32692128 None:intergenic
AACCCTACAACACCAGGAAC+AGG 0.450399 2_1:-32692287 Msa0205670:CDS
GGTTTGAGTATGGATTTGTT+GGG 0.453799 2_1:+32692168 None:intergenic
GAGTATGGATTTGTAGAAGC+TGG 0.464844 2_1:+32692113 None:intergenic
TCTATATTGTTTCAGGTCAT+GGG 0.468762 2_1:-32691481 Msa0205670:intron
GAGTATGGATTTGTTGAACT+TGG 0.470965 2_1:+32692083 None:intergenic
GTGGAGTCATACTACTTGGT+GGG 0.472174 2_1:+32691269 None:intergenic
CTTCTAGCTCCCATTTCTTG+AGG 0.477633 2_1:+32693409 None:intergenic
GATCCTGTTCCTGGTGTTGT+GGG 0.480455 2_1:+32692011 None:intergenic
ACACCAGGAACAGGATCATC+TGG 0.480901 2_1:-32692005 Msa0205670:CDS
AGGGACTTGTAGAGGTTGGT+GGG 0.484204 2_1:+32692147 None:intergenic
GTGGTGGTGGTAGTGGTCAG+TGG 0.487996 2_1:-32691968 Msa0205670:CDS
TATGGATTTGTTGAACTTGG+TGG 0.489297 2_1:+32692086 None:intergenic
GGTGTTGTAGGGTTCACAAT+AGG 0.490997 2_1:+32692296 None:intergenic
ACTCCCACAACACCAGGAAC+AGG 0.492125 2_1:-32692014 Msa0205670:CDS
GAAGATCCTCCATCAGGATC+AGG 0.492646 2_1:+32691232 None:intergenic
GACCCTTTGATTGGAATTCA+CGG 0.493498 2_1:-32691038 Msa0205670:three_prime_UTR
GAATAGGGACTTGTAGAGGT+TGG 0.497717 2_1:+32692143 None:intergenic
TAGGGACTTGTAGAGGTTGG+TGG 0.498204 2_1:+32692146 None:intergenic
TGTTTGAGTAGCACTACTCT+TGG 0.499473 2_1:+32690939 None:intergenic
GGTGGAGTCATACTACTTGG+TGG 0.503748 2_1:+32691268 None:intergenic
ACAGGATCATCTGGTGGTGG+TGG 0.506368 2_1:-32691996 Msa0205670:CDS
GTAGCTTTGGATTATGCTTG+TGG 0.506964 2_1:-32691906 Msa0205670:CDS
CTTGGTGGGGTCATAGTAGT+TGG 0.507780 2_1:+32691283 None:intergenic
TGATCCTGTTCCTGGTGTTG+TGG 0.511505 2_1:+32692010 None:intergenic
ACTGATGAAGATCCTCCATC+AGG 0.512268 2_1:+32691226 None:intergenic
GCTATATTAGGGCTTCCTCC+TGG 0.517344 2_1:+32691190 None:intergenic
ACCCCACCAAGCCCAGACAC+AGG 0.517368 2_1:-32692200 Msa0205670:CDS
GACCGTGAATTCCAATCAAA+GGG 0.517381 2_1:+32691036 None:intergenic
AAGATTAAATTCTCCATCAC+AGG 0.523019 2_1:-32693532 Msa0205670:five_prime_UTR
ATGGATTTGTTGAACTTGGT+GGG 0.527334 2_1:+32692087 None:intergenic
CTAGGTGGAGTCATAGTAGT+TGG 0.529430 2_1:+32691307 None:intergenic
TCAGTCTATGGTTCACCACC+AGG 0.530618 2_1:-32691208 Msa0205670:CDS
ATGGATTTGTAGAAGCTGGT+GGG 0.535192 2_1:+32692117 None:intergenic
TCAGGCATTGTCATGCTTGG+TGG 0.535375 2_1:+32691250 None:intergenic
CTTGGTGGAGTCATACTACT+TGG 0.535914 2_1:+32691265 None:intergenic
CAACCACCTGATACAAGTAC+TGG 0.538231 2_1:-32692227 Msa0205670:CDS
GGATCAGGCATTGTCATGCT+TGG 0.540422 2_1:+32691247 None:intergenic
GCACATGAAGTGTAGCATAG+AGG 0.541615 2_1:+32691125 None:intergenic
AAGAAATGGGAGCTAGAAGT+TGG 0.544857 2_1:-32693405 Msa0205670:exon
ATTTCAGATAAAGGGATACA+TGG 0.547195 2_1:-32690813 Msa0205670:three_prime_UTR
AGACCGTGAATTCCAATCAA+AGG 0.547270 2_1:+32691035 None:intergenic
GTACTTGTATCAGGTGGTTG+AGG 0.550652 2_1:+32692230 None:intergenic
GCTATTGATTGAATATGGAA+TGG 0.558429 2_1:-32690735 Msa0205670:three_prime_UTR
ACATTGCTCATAAACTTGAA+AGG 0.561393 2_1:-32693461 Msa0205670:five_prime_UTR
CATTGACACGTGTCAGACAC+TGG 0.562631 2_1:-32691078 Msa0205670:three_prime_UTR
GGGGTCATAGTAGTTGGACT+AGG 0.565638 2_1:+32691289 None:intergenic
GTGGAGTCATAGTAGTTGGT+GGG 0.565923 2_1:+32691311 None:intergenic
CCTACAAGTTGTGTATTTGG+AGG 0.565962 2_1:-32691771 Msa0205670:CDS
AATGTGACTCCCACAACACC+AGG 0.569381 2_1:-32692020 Msa0205670:CDS
TAAAATCACACCTGAACAGA+GGG 0.572156 2_1:+32693354 None:intergenic
AATACACAACTTGTAGGTGC+AGG 0.573202 2_1:+32691777 None:intergenic
TGTAGTGAGTAGGAACAGAA+TGG 0.574812 2_1:+32691150 None:intergenic
GGTGGAGTCATAGTAGTTGG+TGG 0.575064 2_1:+32691310 None:intergenic
GTCATAGTAGTTGGACTAGG+TGG 0.577026 2_1:+32691292 None:intergenic
TGTCCAGTACTTGTATCAGG+TGG 0.578521 2_1:+32692224 None:intergenic
ATAAAATCACACCTGAACAG+AGG 0.579833 2_1:+32693353 None:intergenic
CATAGAGGCTTGTAGTGAGT+AGG 0.580025 2_1:+32691140 None:intergenic
TTGCAATGAAGTTCCTGTGA+TGG 0.600039 2_1:+32693519 None:intergenic
GTTGGTGGGCTTACATATGT+TGG 0.617811 2_1:+32691325 None:intergenic
GGAACAGGATCATCTGGTGG+TGG 0.620332 2_1:-32691999 Msa0205670:CDS
ATTGTGAACCCTACAACACC+AGG 0.620914 2_1:-32692293 Msa0205670:CDS
ATGACAATGCCTGATCCTGA+TGG 0.624431 2_1:-32691241 Msa0205670:CDS
CCTACAACACCAGGAACAGG+AGG 0.624591 2_1:-32692284 Msa0205670:CDS
TGGAGTCATACTACTTGGTG+GGG 0.627266 2_1:+32691270 None:intergenic
TATGGATTTGTAGAAGCTGG+TGG 0.627475 2_1:+32692116 None:intergenic
AATGGAATAAGAAGTTGATG+AGG 0.629157 2_1:+32691168 None:intergenic
ATATTAGGGCTTCCTCCTGG+TGG 0.632131 2_1:+32691193 None:intergenic
TAAATGGATACATTGATGCA+AGG 0.637168 2_1:+32690913 None:intergenic
GTGAATTCCAATCAAAGGGT+CGG 0.641756 2_1:+32691040 None:intergenic
GTTTGAATAGGGACTTGTAG+AGG 0.646608 2_1:+32692139 None:intergenic
TCTCATCCTCCAAAACAACA+AGG 0.698612 2_1:-32691448 Msa0205670:intron
CCAGGAACAGGATCATCTGG+TGG 0.699045 2_1:-32692002 Msa0205670:CDS
GATTGTTCACAACTTCAACA+AGG 0.714222 2_1:-32691873 Msa0205670:CDS
GTCTATGGTTCACCACCAGG+AGG 0.724042 2_1:-32691205 Msa0205670:CDS
ACAATGCCTGATCCTGATGG+AGG 0.725256 2_1:-32691238 Msa0205670:CDS
TGTTCACAACTTCAACAAGG+AGG 0.728282 2_1:-32691870 Msa0205670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATGGATTTAATTT+TGG + chr2_1:32691393-32691412 None:intergenic 10.0%
!!! AAAATTAAGTTGTATGTATT+TGG - chr2_1:32691171-32691190 Msa0205670:CDS 15.0%
!!! ATATCTATATTTTGTTTTAC+AGG - chr2_1:32691869-32691888 Msa0205670:CDS 15.0%
!! ACTTATTCATTAATTCAATC+AGG - chr2_1:32691804-32691823 Msa0205670:CDS 20.0%
!!! ATATTTTGTTTTACAGGTTT+AGG - chr2_1:32691875-32691894 Msa0205670:CDS 20.0%
!! ATCATGATGAATTGATATTA+AGG + chr2_1:32692568-32692587 None:intergenic 20.0%
!!! GTTATTTTCTATATTGTTTC+AGG - chr2_1:32692770-32692789 Msa0205670:intron 20.0%
!!! GTTTTTATGCATTACTAATA+AGG + chr2_1:32692866-32692885 None:intergenic 20.0%
!! AAGGATAATACATATATTAG+AGG + chr2_1:32692894-32692913 None:intergenic 20.0%
!! TGCAAGAATTAATTCATATA+TGG + chr2_1:32693298-32693317 None:intergenic 20.0%
!! AGATTATCTATTTCAGATAA+AGG - chr2_1:32693436-32693455 Msa0205670:five_prime_UTR 20.0%
!! GATTATCTATTTCAGATAAA+GGG - chr2_1:32693437-32693456 Msa0205670:five_prime_UTR 20.0%
! AGAAATTAAACCTCAAGAAA+TGG - chr2_1:32690839-32690858 Msa0205670:three_prime_UTR 25.0%
! GAAATTAAACCTCAAGAAAT+GGG - chr2_1:32690840-32690859 Msa0205670:three_prime_UTR 25.0%
!! GTAGAGAAGTATATATTGAA+AGG + chr2_1:32690953-32690972 None:intergenic 25.0%
!! TATACTTCTCTACGTTTTAT+AGG - chr2_1:32690960-32690979 Msa0205670:three_prime_UTR 25.0%
!!! TGGTACATGACTTATTTTTA+TGG + chr2_1:32691405-32691424 None:intergenic 25.0%
! ATATCCAAAATGACAACATT+TGG - chr2_1:32691455-32691474 Msa0205670:CDS 25.0%
!! ATGATACAGATTTTAAATCG+TGG + chr2_1:32691661-32691680 None:intergenic 25.0%
! AGGATGAACTTATTAACATA+AGG - chr2_1:32691718-32691737 Msa0205670:intron 25.0%
! TATTAACATAAGGTAGTTGT+AGG - chr2_1:32691728-32691747 Msa0205670:intron 25.0%
! TGAATCTTCTCTTAATCTTA+TGG + chr2_1:32691906-32691925 None:intergenic 25.0%
!! CATGATCTTTCAAAGTATTT+GGG + chr2_1:32692426-32692445 None:intergenic 25.0%
! TGTTGTATGAATATCTTACT+TGG + chr2_1:32692538-32692557 None:intergenic 25.0%
! AGATATTCATACAACATTGA+AGG - chr2_1:32692542-32692561 Msa0205670:intron 25.0%
! AATTCATCATGATCATTGAA+CGG - chr2_1:32692575-32692594 Msa0205670:intron 25.0%
! TACTTGATTTAGATCATGTT+TGG + chr2_1:32692742-32692761 None:intergenic 25.0%
! ATAAATCTGCTAATGCTAAA+TGG + chr2_1:32693364-32693383 None:intergenic 25.0%
! TTTAGCATTAGCAGATTTAT+AGG - chr2_1:32693364-32693383 Msa0205670:intron 25.0%
AAGATTAAATTCTCCATCAC+AGG - chr2_1:32690726-32690745 Msa0205670:three_prime_UTR 30.0%
GTTTATGAGCAATGTTTAAG+AGG + chr2_1:32690792-32690811 None:intergenic 30.0%
ACATTGCTCATAAACTTGAA+AGG - chr2_1:32690797-32690816 Msa0205670:three_prime_UTR 30.0%
GACATAGCAAAAATAAGACA+AGG + chr2_1:32690881-32690900 None:intergenic 30.0%
AATAGTTGTGTTGTGTGATA+AGG - chr2_1:32691011-32691030 Msa0205670:three_prime_UTR 30.0%
AGAAAAAACAAGCATGTACA+TGG + chr2_1:32691425-32691444 None:intergenic 30.0%
!! GAATCCAAATGTTGTCATTT+TGG + chr2_1:32691462-32691481 None:intergenic 30.0%
! ACAGATTTTAAATCGTGGTT+GGG + chr2_1:32691656-32691675 None:intergenic 30.0%
! TACAGATTTTAAATCGTGGT+TGG + chr2_1:32691657-32691676 None:intergenic 30.0%
! TCACCTGAATAAGTTGAATT+AGG - chr2_1:32691698-32691717 Msa0205670:intron 30.0%
CATCCTAATTCAACTTATTC+AGG + chr2_1:32691704-32691723 None:intergenic 30.0%
! GCATGATCTTTCAAAGTATT+TGG + chr2_1:32692427-32692446 None:intergenic 30.0%
! TTCTATATTGTTTCAGGTCA+TGG - chr2_1:32692776-32692795 Msa0205670:intron 30.0%
! TCTATATTGTTTCAGGTCAT+GGG - chr2_1:32692777-32692796 Msa0205670:intron 30.0%
!!! AAATTCTCACCTTGTTGTTT+TGG + chr2_1:32692822-32692841 None:intergenic 30.0%
!! AAGTTGATGAGGCTATATTA+GGG + chr2_1:32693082-32693101 None:intergenic 30.0%
!! AATGGAATAAGAAGTTGATG+AGG + chr2_1:32693093-32693112 None:intergenic 30.0%
TAAATGGATACATTGATGCA+AGG + chr2_1:32693348-32693367 None:intergenic 30.0%
ATTTCAGATAAAGGGATACA+TGG - chr2_1:32693445-32693464 Msa0205670:five_prime_UTR 30.0%
! GCATAGCTATTGATTGAATA+TGG - chr2_1:32693518-32693537 Msa0205670:five_prime_UTR 30.0%
! GCTATTGATTGAATATGGAA+TGG - chr2_1:32693523-32693542 Msa0205670:five_prime_UTR 30.0%
TAAAATCACACCTGAACAGA+GGG + chr2_1:32690907-32690926 None:intergenic 35.0%
ATAAAATCACACCTGAACAG+AGG + chr2_1:32690908-32690927 None:intergenic 35.0%
TGTTGTGTGATAAGGAGTTA+AGG - chr2_1:32691019-32691038 Msa0205670:three_prime_UTR 35.0%
TTGAAACATGTAAAGCTGCA+GGG - chr2_1:32691109-32691128 Msa0205670:exon 35.0%
! TTTTTCTATTCCGCAGTCAT+AGG - chr2_1:32691513-32691532 Msa0205670:intron 35.0%
TAATATTACGACCGAGATCA+TGG + chr2_1:32691545-32691564 None:intergenic 35.0%
TGATCTCGGTCGTAATATTA+AGG - chr2_1:32691545-32691564 Msa0205670:intron 35.0%
TTGTAACACAACTGTGATTG+AGG - chr2_1:32691586-32691605 Msa0205670:intron 35.0%
AACATAAGGTAGTTGTAGGA+AGG - chr2_1:32691732-32691751 Msa0205670:intron 35.0%
GTTGGGTTTATAGTAGGATA+AGG + chr2_1:32692004-32692023 None:intergenic 35.0%
! GGTTTGAGTATGGATTTGTT+GGG + chr2_1:32692093-32692112 None:intergenic 35.0%
!! ATGGATTTGTTGAACTTGGT+GGG + chr2_1:32692174-32692193 None:intergenic 35.0%
!! TATGGATTTGTTGAACTTGG+TGG + chr2_1:32692175-32692194 None:intergenic 35.0%
!! GAGTATGGATTTGTTGAACT+TGG + chr2_1:32692178-32692197 None:intergenic 35.0%
TTGTTGGAGTTGTTGTAGTT+GGG + chr2_1:32692213-32692232 None:intergenic 35.0%
! GACTACTTTAAAGGTAGCTT+TGG - chr2_1:32692339-32692358 Msa0205670:CDS 35.0%
TTGGATTATGCTTGTGGATA+TGG - chr2_1:32692358-32692377 Msa0205670:CDS 35.0%
GATTGTTCACAACTTCAACA+AGG - chr2_1:32692385-32692404 Msa0205670:intron 35.0%
ACATGTGTTAATGTTGTGTC+AGG + chr2_1:32692635-32692654 None:intergenic 35.0%
AGCATAAACGTTTGTCATGT+AGG + chr2_1:32692697-32692716 None:intergenic 35.0%
!! GAAGTTGATGAGGCTATATT+AGG + chr2_1:32693083-32693102 None:intergenic 35.0%
TGAAATCTTGCAAAATCTCC+TGG + chr2_1:32693250-32693269 None:intergenic 35.0%
TTGCAATGAAGTTCCTGTGA+TGG + chr2_1:32690742-32690761 None:intergenic 40.0%
AAGAAATGGGAGCTAGAAGT+TGG - chr2_1:32690853-32690872 Msa0205670:three_prime_UTR 40.0%
GTTGAAACATGTAAAGCTGC+AGG - chr2_1:32691108-32691127 Msa0205670:exon 40.0%
ATAGGACACATCCATGATCT+CGG - chr2_1:32691531-32691550 Msa0205670:intron 40.0%
CGCGGTTAAATTCAGTTGAA+CGG + chr2_1:32691612-32691631 None:intergenic 40.0%
TTCGATATTATGGCAGATCG+CGG + chr2_1:32691630-32691649 None:intergenic 40.0%
GGTTGGGATCTTCGATATTA+TGG + chr2_1:32691640-32691659 None:intergenic 40.0%
GGAGATGTTGGGTTTATAGT+AGG + chr2_1:32692010-32692029 None:intergenic 40.0%
GTTTGTCCAGTACTTGTATC+AGG + chr2_1:32692040-32692059 None:intergenic 40.0%
GGGTTTGAGTATGGATTTGT+TGG + chr2_1:32692094-32692113 None:intergenic 40.0%
GTTTGAATAGGGACTTGTAG+AGG + chr2_1:32692122-32692141 None:intergenic 40.0%
ATGGATTTGTAGAAGCTGGT+GGG + chr2_1:32692144-32692163 None:intergenic 40.0%
TATGGATTTGTAGAAGCTGG+TGG + chr2_1:32692145-32692164 None:intergenic 40.0%
GAGTATGGATTTGTAGAAGC+TGG + chr2_1:32692148-32692167 None:intergenic 40.0%
! TTGTTGTAGTTGGGCTTGTT+GGG + chr2_1:32692204-32692223 None:intergenic 40.0%
CTTGTTGGAGTTGTTGTAGT+TGG + chr2_1:32692214-32692233 None:intergenic 40.0%
AGCTGCAGAGACTACTTTAA+AGG - chr2_1:32692330-32692349 Msa0205670:CDS 40.0%
!! GTAGCTTTGGATTATGCTTG+TGG - chr2_1:32692352-32692371 Msa0205670:CDS 40.0%
TGTTCACAACTTCAACAAGG+AGG - chr2_1:32692388-32692407 Msa0205670:intron 40.0%
AATACACAACTTGTAGGTGC+AGG + chr2_1:32692484-32692503 None:intergenic 40.0%
GCACCTACAAGTTGTGTATT+TGG - chr2_1:32692484-32692503 Msa0205670:intron 40.0%
CCTCCAAATACACAACTTGT+AGG + chr2_1:32692490-32692509 None:intergenic 40.0%
CCTACAAGTTGTGTATTTGG+AGG - chr2_1:32692487-32692506 Msa0205670:intron 40.0%
TCTCATCCTCCAAAACAACA+AGG - chr2_1:32692810-32692829 Msa0205670:intron 40.0%
!!! TTCTCACCTTGTTGTTTTGG+AGG + chr2_1:32692819-32692838 None:intergenic 40.0%
TGTAGTGAGTAGGAACAGAA+TGG + chr2_1:32693111-32693130 None:intergenic 40.0%
TATTACACCGACCCTTTGAT+TGG - chr2_1:32693211-32693230 Msa0205670:intron 40.0%
GTGAATTCCAATCAAAGGGT+CGG + chr2_1:32693221-32693240 None:intergenic 40.0%
GACCCTTTGATTGGAATTCA+CGG - chr2_1:32693220-32693239 Msa0205670:intron 40.0%
GACCGTGAATTCCAATCAAA+GGG + chr2_1:32693225-32693244 None:intergenic 40.0%
AGACCGTGAATTCCAATCAA+AGG + chr2_1:32693226-32693245 None:intergenic 40.0%
TGTTTGAGTAGCACTACTCT+TGG + chr2_1:32693322-32693341 None:intergenic 40.0%
!! CTTCTAGCTCCCATTTCTTG+AGG + chr2_1:32690852-32690871 None:intergenic 45.0%
CTATGTCTTTCCCTCTGTTC+AGG - chr2_1:32690894-32690913 Msa0205670:three_prime_UTR 45.0%
ATGGATGTGTCCTATGACTG+CGG + chr2_1:32691526-32691545 None:intergenic 45.0%
! GGTGTTGTAGGGTTCACAAT+AGG + chr2_1:32691965-32691984 None:intergenic 45.0%
ATTGTGAACCCTACAACACC+AGG - chr2_1:32691965-32691984 Msa0205670:CDS 45.0%
TAAGGATTTCCTCCTGTTCC+TGG + chr2_1:32691986-32692005 None:intergenic 45.0%
GTACTTGTATCAGGTGGTTG+AGG + chr2_1:32692031-32692050 None:intergenic 45.0%
CAACCACCTGATACAAGTAC+TGG - chr2_1:32692031-32692050 Msa0205670:CDS 45.0%
TGTCCAGTACTTGTATCAGG+TGG + chr2_1:32692037-32692056 None:intergenic 45.0%
GAATAGGGACTTGTAGAGGT+TGG + chr2_1:32692118-32692137 None:intergenic 45.0%
!! GAAGCTGGTGGGTTTGAATA+GGG + chr2_1:32692133-32692152 None:intergenic 45.0%
!! AGAAGCTGGTGGGTTTGAAT+AGG + chr2_1:32692134-32692153 None:intergenic 45.0%
!! GAACTTGGTGGGTTTGAGTA+TGG + chr2_1:32692163-32692182 None:intergenic 45.0%
GTTGTTGTAGTTGGGCTTGT+TGG + chr2_1:32692205-32692224 None:intergenic 45.0%
GTGTTGTGGGAGTCACATTT+GGG + chr2_1:32692237-32692256 None:intergenic 45.0%
GATCATTGAACGGTAGTGTC+TGG - chr2_1:32692585-32692604 Msa0205670:intron 45.0%
GGTCAAACACTGATACGTGT+CGG + chr2_1:32692614-32692633 None:intergenic 45.0%
TGAACTCATGCTGCAATGCA+AGG + chr2_1:32692913-32692932 None:intergenic 45.0%
!! GTTGGTGGGCTTACATATGT+TGG + chr2_1:32692936-32692955 None:intergenic 45.0%
GTGGAGTCATAGTAGTTGGT+GGG + chr2_1:32692950-32692969 None:intergenic 45.0%
CTAGGTGGAGTCATAGTAGT+TGG + chr2_1:32692954-32692973 None:intergenic 45.0%
! GTCATAGTAGTTGGACTAGG+TGG + chr2_1:32692969-32692988 None:intergenic 45.0%
! TGGAGTCATACTACTTGGTG+GGG + chr2_1:32692991-32693010 None:intergenic 45.0%
GTGGAGTCATACTACTTGGT+GGG + chr2_1:32692992-32693011 None:intergenic 45.0%
CTTGGTGGAGTCATACTACT+TGG + chr2_1:32692996-32693015 None:intergenic 45.0%
ATGACAATGCCTGATCCTGA+TGG - chr2_1:32693017-32693036 Msa0205670:intron 45.0%
ACTGATGAAGATCCTCCATC+AGG + chr2_1:32693035-32693054 None:intergenic 45.0%
GGAGGATCTTCATCAGTCTA+TGG - chr2_1:32693038-32693057 Msa0205670:intron 45.0%
CATAGAGGCTTGTAGTGAGT+AGG + chr2_1:32693121-32693140 None:intergenic 45.0%
GCACATGAAGTGTAGCATAG+AGG + chr2_1:32693136-32693155 None:intergenic 45.0%
ATTGGAATTCACGGTCTTCC+AGG - chr2_1:32693229-32693248 Msa0205670:intron 45.0%
!!! ATTTTATTTTTTAAATACTT+TGG - chr2_1:32690926-32690945 Msa0205670:three_prime_UTR 5.0%
AACCCTACAACACCAGGAAC+AGG - chr2_1:32691971-32691990 Msa0205670:CDS 50.0%
!! CTCCTGTTCCTGGTGTTGTA+GGG + chr2_1:32691976-32691995 None:intergenic 50.0%
CAGGTGGTTGAGGAGATGTT+GGG + chr2_1:32692021-32692040 None:intergenic 50.0%
TCAGGTGGTTGAGGAGATGT+TGG + chr2_1:32692022-32692041 None:intergenic 50.0%
!! GAGGTTGGTGGGTTTGAGTA+TGG + chr2_1:32692103-32692122 None:intergenic 50.0%
! AGGGACTTGTAGAGGTTGGT+GGG + chr2_1:32692114-32692133 None:intergenic 50.0%
TAGGGACTTGTAGAGGTTGG+TGG + chr2_1:32692115-32692134 None:intergenic 50.0%
!! GGGCTTGTTGGGTTTGAGTA+TGG + chr2_1:32692193-32692212 None:intergenic 50.0%
GGAGTCACATTTGGGCTTGT+TGG + chr2_1:32692229-32692248 None:intergenic 50.0%
! GGTGTTGTGGGAGTCACATT+TGG + chr2_1:32692238-32692257 None:intergenic 50.0%
AATGTGACTCCCACAACACC+AGG - chr2_1:32692238-32692257 Msa0205670:CDS 50.0%
!! GATCCTGTTCCTGGTGTTGT+GGG + chr2_1:32692250-32692269 None:intergenic 50.0%
! TGATCCTGTTCCTGGTGTTG+TGG + chr2_1:32692251-32692270 None:intergenic 50.0%
ACACCAGGAACAGGATCATC+TGG - chr2_1:32692253-32692272 Msa0205670:CDS 50.0%
GGTGGAGTCATAGTAGTTGG+TGG + chr2_1:32692951-32692970 None:intergenic 50.0%
GGGGTCATAGTAGTTGGACT+AGG + chr2_1:32692972-32692991 None:intergenic 50.0%
CTTGGTGGGGTCATAGTAGT+TGG + chr2_1:32692978-32692997 None:intergenic 50.0%
GGTGGAGTCATACTACTTGG+TGG + chr2_1:32692993-32693012 None:intergenic 50.0%
! TCAGGCATTGTCATGCTTGG+TGG + chr2_1:32693011-32693030 None:intergenic 50.0%
! GGATCAGGCATTGTCATGCT+TGG + chr2_1:32693014-32693033 None:intergenic 50.0%
ACAATGCCTGATCCTGATGG+AGG - chr2_1:32693020-32693039 Msa0205670:intron 50.0%
GAAGATCCTCCATCAGGATC+AGG + chr2_1:32693029-32693048 None:intergenic 50.0%
TCAGTCTATGGTTCACCACC+AGG - chr2_1:32693050-32693069 Msa0205670:intron 50.0%
ATATTAGGGCTTCCTCCTGG+TGG + chr2_1:32693068-32693087 None:intergenic 50.0%
GCTATATTAGGGCTTCCTCC+TGG + chr2_1:32693071-32693090 None:intergenic 50.0%
CATTGACACGTGTCAGACAC+TGG - chr2_1:32693180-32693199 Msa0205670:intron 50.0%
!! CCTCCTGTTCCTGGTGTTGT+AGG + chr2_1:32691977-32691996 None:intergenic 55.0%
CCTACAACACCAGGAACAGG+AGG - chr2_1:32691974-32691993 Msa0205670:CDS 55.0%
!! GGCTTGTTGTGCCTGTGTCT+GGG + chr2_1:32692072-32692091 None:intergenic 55.0%
ACTCCCACAACACCAGGAAC+AGG - chr2_1:32692244-32692263 Msa0205670:CDS 55.0%
CCACCAGATGATCCTGTTCC+TGG + chr2_1:32692259-32692278 None:intergenic 55.0%
CCAGGAACAGGATCATCTGG+TGG - chr2_1:32692256-32692275 Msa0205670:CDS 55.0%
GGAACAGGATCATCTGGTGG+TGG - chr2_1:32692259-32692278 Msa0205670:CDS 55.0%
!! ACAGGATCATCTGGTGGTGG+TGG - chr2_1:32692262-32692281 Msa0205670:CDS 55.0%
GTCTATGGTTCACCACCAGG+AGG - chr2_1:32693053-32693072 Msa0205670:intron 55.0%
! TGCCTGTGTCTGGGCTTGGT+GGG + chr2_1:32692063-32692082 None:intergenic 60.0%
GTTGTGCCTGTGTCTGGGCT+TGG + chr2_1:32692067-32692086 None:intergenic 60.0%
!! GGGCTTGTTGTGCCTGTGTC+TGG + chr2_1:32692073-32692092 None:intergenic 60.0%
!! GGATCATCTGGTGGTGGTGG+TGG - chr2_1:32692265-32692284 Msa0205670:CDS 60.0%
!! TCATCTGGTGGTGGTGGTGG+TGG - chr2_1:32692268-32692287 Msa0205670:CDS 60.0%
!! GTGGTGGTGGTAGTGGTCAG+TGG - chr2_1:32692290-32692309 Msa0205670:CDS 60.0%
ACCCCACCAAGCCCAGACAC+AGG - chr2_1:32692058-32692077 Msa0205670:CDS 65.0%
!! GCCTGTGTCTGGGCTTGGTG+GGG + chr2_1:32692062-32692081 None:intergenic 65.0%
GTGCCTGTGTCTGGGCTTGG+TGG + chr2_1:32692064-32692083 None:intergenic 65.0%
!! TCTGGTGGTGGTGGTGGTGG+TGG - chr2_1:32692271-32692290 Msa0205670:CDS 65.0%
!! GGTGGTGGTGGTGGTGGTAG+TGG - chr2_1:32692283-32692302 Msa0205670:CDS 65.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG - chr2_1:32692274-32692293 Msa0205670:CDS 70.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG - chr2_1:32692274-32692293 Msa0205670:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 32690722 32693558 32690722 ID=Msa0205670;Name=Msa0205670
chr2_1 mRNA 32690722 32693558 32690722 ID=Msa0205670-mRNA-1;Parent=Msa0205670;Name=Msa0205670-mRNA-1;_AED=0.02;_eAED=0.02;_QI=136|1|0.75|1|1|1|4|389|330
chr2_1 exon 32690722 32691357 32690722 ID=Msa0205670-mRNA-1:exon:11385;Parent=Msa0205670-mRNA-1
chr2_1 exon 32691449 32691488 32691449 ID=Msa0205670-mRNA-1:exon:11384;Parent=Msa0205670-mRNA-1
chr2_1 exon 32691742 32692389 32691742 ID=Msa0205670-mRNA-1:exon:11383;Parent=Msa0205670-mRNA-1
chr2_1 exon 32693365 32693558 32693365 ID=Msa0205670-mRNA-1:exon:11382;Parent=Msa0205670-mRNA-1
chr2_1 five_prime_UTR 32693423 32693558 32693423 ID=Msa0205670-mRNA-1:five_prime_utr;Parent=Msa0205670-mRNA-1
chr2_1 CDS 32693365 32693422 32693365 ID=Msa0205670-mRNA-1:cds;Parent=Msa0205670-mRNA-1
chr2_1 CDS 32691742 32692389 32691742 ID=Msa0205670-mRNA-1:cds;Parent=Msa0205670-mRNA-1
chr2_1 CDS 32691449 32691488 32691449 ID=Msa0205670-mRNA-1:cds;Parent=Msa0205670-mRNA-1
chr2_1 CDS 32691111 32691357 32691111 ID=Msa0205670-mRNA-1:cds;Parent=Msa0205670-mRNA-1
chr2_1 three_prime_UTR 32690722 32691110 32690722 ID=Msa0205670-mRNA-1:three_prime_utr;Parent=Msa0205670-mRNA-1
Gene Sequence

>Msa0205670

ATGGGAGCTAGAAGTTGGCACCTTGTCTTATTTTTGCTATGTCTTTCCCTCTGTTCAGGTTTAGGTACAGCCATAAGATTAAGAGAAGATTCATCATATGAATTTAGTACAACTCAATCAGATTCAATTCCTATTGTGAACCCTACAACACCAGGAACAGGAGGAAATCCTTATCCTACTATAAACCCAACATCTCCTCAACCACCTGATACAAGTACTGGACAAACCCCACCAAGCCCAGACACAGGCACAACAAGCCCAACAAATCCATACTCAAACCCACCAACCTCTACAAGTCCCTATTCAAACCCACCAGCTTCTACAAATCCATACTCAAACCCACCAAGTTCAACAAATCCATACTCAAACCCAACAAGCCCAACTACAACAACTCCAACAAGCCCAAATGTGACTCCCACAACACCAGGAACAGGATCATCTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTGGTCAGTGGTGTGTTGCAAGTGAATCAGCTGCAGAGACTACTTTAAAGGTAGCTTTGGATTATGCTTGTGGATATGGTGCAGATTGTTCACAACTTCAACAAGGAGGAGCTTGTTATGACCCAAATACTTTGAAAGATCATGCTTCTTATGCATTCAATGATTACTATCAAAAGAATCCTGCACCTACAAGTTGTGTATTTGGAGGAGTAGCATCACTCACAAGCAAAGATCCAAGTCATGGGAATTGTCACTTCTCATCCTCCAAAACAACAAGCATGAGTTCACCAACATATGTAAGCCCACCAACTACTATGACTCCACCTAGTCCAACTACTATGACCCCACCAAGTAGTATGACTCCACCAAGCATGACAATGCCTGATCCTGATGGAGGATCTTCATCAGTCTATGGTTCACCACCAGGAGGAAGCCCTAATATAGCCTCATCAACTTCTTATTCCATTCTGTTCCTACTCACTACAAGCCTCTATGCTACACTTCATGTGCAAAATTACGTCTAG
Protein sequence

>Msa0205670

MGARSWHLVLFLLCLSLCSGLGTAIRLREDSSYEFSTTQSDSIPIVNPTTPGTGGNPYPTINPTSPQPPDTSTGQTPPSPDTGTTSPTNPYSNPPTSTSPYSNPPASTNPYSNPPSSTNPYSNPTSPTTTTPTSPNVTPTTPGTGSSGGGGGGGGGSGQWCVASESAAETTLKVALDYACGYGADCSQLQQGGACYDPNTLKDHASYAFNDYYQKNPAPTSCVFGGVASLTSKDPSHGNCHFSSSKTTSMSSPTYVSPPTTMTPPSPTTMTPPSSMTPPSMTMPDPDGGSSSVYGSPPGGSPNIASSTSYSILFLLTTSLYATLHVQNYV*