Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055310 | XP_003622294.1 | 96.296 | 729 | 27 | 0 | 1 | 729 | 1 | 729 | 0.0 | 1471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055310 | sp|Q9SS87|SEOB_ARATH | 45.742 | 728 | 371 | 12 | 3 | 717 | 19 | 735 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055310 | Q2HUY0 | 96.296 | 729 | 27 | 0 | 1 | 729 | 1 | 729 | 0.0 | 1471 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009780 | Msa1055310 | 0.817234 | 3.664810e-52 | -8.615850e-47 |
| Msa0015150 | Msa1055310 | 0.901771 | 1.912767e-78 | -8.615850e-47 |
| Msa0029960 | Msa1055310 | 0.860699 | 1.721505e-63 | -8.615850e-47 |
| Msa0029970 | Msa1055310 | 0.826841 | 2.174044e-54 | -8.615850e-47 |
| Msa0029990 | Msa1055310 | 0.855620 | 5.582542e-62 | -8.615850e-47 |
| Msa0043290 | Msa1055310 | 0.821442 | 4.028050e-53 | -8.615850e-47 |
| Msa0064120 | Msa1055310 | 0.903317 | 3.930744e-79 | -8.615850e-47 |
| Msa0071840 | Msa1055310 | 0.857319 | 1.769361e-62 | -8.615850e-47 |
| Msa0071850 | Msa1055310 | 0.848449 | 6.087782e-60 | -8.615850e-47 |
| Msa0071860 | Msa1055310 | 0.842387 | 2.666977e-58 | -8.615850e-47 |
| Msa0108880 | Msa1055310 | 0.883703 | 3.585252e-71 | -8.615850e-47 |
| Msa0609300 | Msa1055310 | 0.832081 | 1.158772e-55 | -8.615850e-47 |
| Msa0649840 | Msa1055310 | 0.861212 | 1.202165e-63 | -8.615850e-47 |
| Msa0655910 | Msa1055310 | 0.812876 | 3.400795e-51 | -8.615850e-47 |
| Msa0691910 | Msa1055310 | 0.833886 | 4.121047e-56 | -8.615850e-47 |
| Msa0736440 | Msa1055310 | 0.812529 | 4.049327e-51 | -8.615850e-47 |
| Msa0738700 | Msa1055310 | 0.802179 | 6.344527e-49 | -8.615850e-47 |
| Msa0740090 | Msa1055310 | 0.858102 | 1.037376e-62 | -8.615850e-47 |
| Msa0782750 | Msa1055310 | 0.854092 | 1.549339e-61 | -8.615850e-47 |
| Msa0820380 | Msa1055310 | 0.853759 | 1.932369e-61 | -8.615850e-47 |
| Msa0125200 | Msa1055310 | 0.843298 | 1.527183e-58 | -8.615850e-47 |
| Msa0125210 | Msa1055310 | 0.836943 | 6.955931e-57 | -8.615850e-47 |
| Msa0155180 | Msa1055310 | 0.899038 | 2.942766e-77 | -8.615850e-47 |
| Msa0182400 | Msa1055310 | 0.805749 | 1.148442e-49 | -8.615850e-47 |
| Msa0205670 | Msa1055310 | 0.823923 | 1.066447e-53 | -8.615850e-47 |
| Msa0230870 | Msa1055310 | 0.806756 | 7.047017e-50 | -8.615850e-47 |
| Msa0382530 | Msa1055310 | 0.875444 | 3.066216e-68 | -8.615850e-47 |
| Msa0405680 | Msa1055310 | 0.809436 | 1.894270e-50 | -8.615850e-47 |
| Msa0418970 | Msa1055310 | 0.839255 | 1.767870e-57 | -8.615850e-47 |
| Msa0420680 | Msa1055310 | 0.801053 | 1.079545e-48 | -8.615850e-47 |
| Msa0432320 | Msa1055310 | 0.882966 | 6.683002e-71 | -8.615850e-47 |
| Msa0451170 | Msa1055310 | 0.832910 | 7.217634e-56 | -8.615850e-47 |
| Msa0460550 | Msa1055310 | 0.840824 | 6.887760e-58 | -8.615850e-47 |
| Msa0460630 | Msa1055310 | 0.817708 | 2.866106e-52 | -8.615850e-47 |
| Msa1014320 | Msa1055310 | 0.939986 | 5.034541e-100 | -8.615850e-47 |
| Msa1021780 | Msa1055310 | 0.839851 | 1.237023e-57 | -8.615850e-47 |
| Msa1055310 | Msa1187760 | 0.816869 | 4.426986e-52 | -8.615850e-47 |
| Msa1055310 | Msa1188170 | 0.851259 | 9.970021e-61 | -8.615850e-47 |
| Msa1055310 | Msa1209320 | 0.810942 | 8.968132e-51 | -8.615850e-47 |
| Msa1055310 | Msa1255220 | 0.813485 | 2.499177e-51 | -8.615850e-47 |
| Msa1055310 | Msa1257340 | 0.806312 | 8.744893e-50 | -8.615850e-47 |
| Msa1055310 | Msa1262860 | 0.826844 | 2.170763e-54 | -8.615850e-47 |
| Msa1055310 | Msa1290380 | 0.813284 | 2.766987e-51 | -8.615850e-47 |
| Msa1055310 | Msa1290440 | 0.807795 | 4.245352e-50 | -8.615850e-47 |
| Msa1055310 | Msa1356220 | 0.829183 | 5.936022e-55 | -8.615850e-47 |
| Msa1055310 | Msa1367840 | 0.803977 | 2.693868e-49 | -8.615850e-47 |
| Msa1055310 | Msa1429860 | 0.865163 | 7.208261e-65 | -8.615850e-47 |
| Msa1055310 | Msa1435630 | 0.878206 | 3.387028e-69 | -8.615850e-47 |
| Msa0359010 | Msa1055310 | 0.832458 | 9.346601e-56 | -8.615850e-47 |
| Msa0486460 | Msa1055310 | 0.801745 | 7.790093e-49 | -8.615850e-47 |
| Msa0498610 | Msa1055310 | 0.816870 | 4.424529e-52 | -8.615850e-47 |
| Msa0525210 | Msa1055310 | 0.875244 | 3.590699e-68 | -8.615850e-47 |
| Msa0562560 | Msa1055310 | 0.816363 | 5.748815e-52 | -8.615850e-47 |
| Msa0562620 | Msa1055310 | 0.815835 | 7.542248e-52 | -8.615850e-47 |
| Msa0579780 | Msa1055310 | 0.846435 | 2.176002e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055310 | MtrunA17_Chr7g0226571 | 96.296 | 729 | 27 | 0 | 1 | 729 | 1 | 729 | 0.0 | 1471 |
| Msa1055310 | MtrunA17_Chr3g0116601 | 44.837 | 707 | 377 | 10 | 6 | 709 | 8 | 704 | 0.0 | 595 |
| Msa1055310 | MtrunA17_Chr8g0381301 | 44.509 | 692 | 371 | 10 | 26 | 711 | 20 | 704 | 0.0 | 588 |
| Msa1055310 | MtrunA17_Chr1g0186851 | 33.960 | 692 | 402 | 18 | 25 | 713 | 24 | 663 | 1.23e-118 | 371 |
| Msa1055310 | MtrunA17_Chr1g0186841 | 32.267 | 719 | 423 | 16 | 1 | 711 | 1 | 663 | 3.29e-116 | 364 |
| Msa1055310 | MtrunA17_Chr1g0187041 | 33.797 | 719 | 407 | 22 | 10 | 713 | 1 | 665 | 8.60e-115 | 361 |
| Msa1055310 | MtrunA17_Chr1g0186861 | 31.983 | 691 | 415 | 18 | 25 | 711 | 24 | 663 | 6.22e-108 | 343 |
| Msa1055310 | MtrunA17_Chr1g0186911 | 33.223 | 602 | 343 | 16 | 118 | 711 | 11 | 561 | 4.34e-104 | 329 |
| Msa1055310 | MtrunA17_Chr1g0165791 | 30.404 | 717 | 432 | 24 | 26 | 729 | 30 | 692 | 9.20e-95 | 309 |
| Msa1055310 | MtrunA17_Chr1g0186991 | 26.528 | 720 | 424 | 26 | 20 | 713 | 29 | 669 | 6.75e-63 | 222 |
| Msa1055310 | MtrunA17_Chr1g0187001 | 26.345 | 725 | 420 | 25 | 14 | 713 | 3 | 638 | 5.16e-57 | 205 |
| Msa1055310 | MtrunA17_Chr1g0186981 | 27.504 | 629 | 379 | 21 | 104 | 712 | 93 | 664 | 4.69e-53 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055310 | AT3G01680.1 | 45.742 | 728 | 371 | 12 | 3 | 717 | 19 | 735 | 0.0 | 650 |
| Msa1055310 | AT3G01670.1 | 34.473 | 731 | 419 | 17 | 8 | 709 | 121 | 820 | 6.15e-128 | 400 |
| Msa1055310 | AT3G01670.2 | 34.473 | 731 | 419 | 17 | 8 | 709 | 145 | 844 | 1.35e-127 | 400 |
| Msa1055310 | AT1G67790.1 | 28.571 | 707 | 426 | 24 | 27 | 707 | 11 | 664 | 6.89e-79 | 266 |
Find 155 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCCTACAAGATTCTTTC+TGG | 0.178003 | 7_2:-29352963 | Msa1055310:CDS |
| AAACAAACAAACAAACATTT+AGG | 0.205792 | 7_2:+29349760 | None:intergenic |
| GACTTGTTTCAGTTGGATTT+TGG | 0.208899 | 7_2:+29350284 | None:intergenic |
| ACAGCTTTCAAGGAACATTA+TGG | 0.233933 | 7_2:-29350078 | Msa1055310:CDS |
| CTTTAAACTATGGCGAATTC+TGG | 0.250204 | 7_2:-29352848 | Msa1055310:CDS |
| TCTTCTTTAAAACTTGTAAA+AGG | 0.252332 | 7_2:+29350921 | None:intergenic |
| ACAAATCTCTTTATCCATTC+AGG | 0.258994 | 7_2:+29350498 | None:intergenic |
| GCAGCATTTGCTTTAAACTA+TGG | 0.277299 | 7_2:-29352858 | Msa1055310:CDS |
| AATATCTGATGATACCATTT+TGG | 0.307627 | 7_2:-29353499 | Msa1055310:CDS |
| TTCAACTGGTTTACAATCAT+TGG | 0.314448 | 7_2:-29350151 | Msa1055310:CDS |
| TCAGAGGTTTGGTCCACTAT+TGG | 0.316399 | 7_2:+29351164 | None:intergenic |
| CAGAGGTTTGGTCCACTATT+GGG | 0.326528 | 7_2:+29351165 | None:intergenic |
| CTATTCACATGATGTGGATT+TGG | 0.328711 | 7_2:-29350959 | Msa1055310:CDS |
| AAGATCAATTAATTAGTGTT+AGG | 0.336995 | 7_2:+29349877 | None:intergenic |
| TATTCACATGATGTGGATTT+GGG | 0.340749 | 7_2:-29350958 | Msa1055310:CDS |
| ACAATAGATACGAACTAGTT+TGG | 0.347747 | 7_2:-29351190 | Msa1055310:CDS |
| AAGGGTCTTGTTGTAGAAAC+TGG | 0.355147 | 7_2:-29349704 | Msa1055310:three_prime_UTR |
| CACATCATGTGAATAGCATT+AGG | 0.359069 | 7_2:+29350966 | None:intergenic |
| TAAGCCGATTCTTGTTGTAT+TGG | 0.366348 | 7_2:-29351012 | Msa1055310:CDS |
| AAAGCATGATATGGTTCTTC+TGG | 0.370042 | 7_2:-29350332 | Msa1055310:CDS |
| GGTCTGTCCATTCAGAGGTT+TGG | 0.374728 | 7_2:+29351153 | None:intergenic |
| TATACCAGAAAGAATCTTGT+AGG | 0.379009 | 7_2:+29352959 | None:intergenic |
| ATGACTAGCATTGGCAAGTT+AGG | 0.384278 | 7_2:-29353570 | Msa1055310:CDS |
| GAAATGGATGCTGAAGCTTA+TGG | 0.385331 | 7_2:-29351548 | Msa1055310:CDS |
| ATTTGAGTTCTCACATTCAA+TGG | 0.387294 | 7_2:-29350022 | Msa1055310:CDS |
| ACGATGGTGTTTCAAAGAAA+AGG | 0.388410 | 7_2:-29351433 | Msa1055310:CDS |
| ATAGACCAGTATGCAGCAAC+TGG | 0.409238 | 7_2:+29352594 | None:intergenic |
| CTCTTTGGAAGGATGAGACT+TGG | 0.410927 | 7_2:-29350896 | Msa1055310:CDS |
| AACAAACAAACAAACATTTA+GGG | 0.411559 | 7_2:+29349761 | None:intergenic |
| CAGCTTTCAAGGAACATTAT+GGG | 0.412419 | 7_2:-29350077 | Msa1055310:CDS |
| TGGTTTCGAAACAGCTTTCA+AGG | 0.415474 | 7_2:-29350088 | Msa1055310:CDS |
| TTTGGTTCATACAGAGTGAA+TGG | 0.416366 | 7_2:-29351046 | Msa1055310:CDS |
| TGATCTAGTAAATGTCATAT+TGG | 0.421018 | 7_2:-29352709 | Msa1055310:CDS |
| GGTTGGATTGTTCTAGCAAA+AGG | 0.423246 | 7_2:-29350201 | Msa1055310:CDS |
| GTTGAACTCAATGACACATT+TGG | 0.424252 | 7_2:+29352680 | None:intergenic |
| CAAATCTCTTTATCCATTCA+GGG | 0.428121 | 7_2:+29350499 | None:intergenic |
| TTGACTCGGAAATATTGAAC+TGG | 0.428475 | 7_2:-29350848 | Msa1055310:CDS |
| CGATGGTGTTTCAAAGAAAA+GGG | 0.429895 | 7_2:-29351432 | Msa1055310:intron |
| GGATCATCTCAGAAAGCAAC+TGG | 0.431497 | 7_2:-29351980 | Msa1055310:CDS |
| TAAGCAGTTACCTGGTATCA+TGG | 0.439496 | 7_2:-29352772 | Msa1055310:CDS |
| ACATCATGTGAATAGCATTA+GGG | 0.449066 | 7_2:+29350967 | None:intergenic |
| TGATAAGCAAGGCAGTTGTT+TGG | 0.450189 | 7_2:-29351064 | Msa1055310:CDS |
| ATTGAATGCAGAGAAAGAAA+TGG | 0.450364 | 7_2:-29351564 | Msa1055310:intron |
| AAGCTCCCAAGCATCATTAG+AGG | 0.450821 | 7_2:+29352035 | None:intergenic |
| CTTCACCTCTAATGATGCTT+GGG | 0.452359 | 7_2:-29352040 | Msa1055310:CDS |
| TGTCATCGACTTGTTTCAGT+TGG | 0.453249 | 7_2:+29350277 | None:intergenic |
| GTCAATGGACATGCTTCAAC+TGG | 0.459520 | 7_2:-29350165 | Msa1055310:CDS |
| GGTCAGAACAAAGCATGATA+TGG | 0.459683 | 7_2:-29350341 | Msa1055310:CDS |
| TTTCAAGCTTAGAAGTATAG+TGG | 0.462798 | 7_2:-29352001 | Msa1055310:CDS |
| ATGATTTGAGACAGTGTTGT+AGG | 0.469733 | 7_2:+29352620 | None:intergenic |
| TTTGAAACACCATCGTATAG+AGG | 0.473195 | 7_2:+29351440 | None:intergenic |
| TCGGGGCACGTGAGTCGATC+AGG | 0.474156 | 7_2:+29349991 | None:intergenic |
| TCTTCACCTCTAATGATGCT+TGG | 0.475443 | 7_2:-29352041 | Msa1055310:CDS |
| TCCAACATGCTTGTGTAGGC+AGG | 0.476904 | 7_2:+29353101 | None:intergenic |
| TTGGTTACAATGACTAGCAT+TGG | 0.484127 | 7_2:-29353579 | Msa1055310:exon |
| ACTAGTTTGGATCCCAATAG+TGG | 0.485167 | 7_2:-29351177 | Msa1055310:CDS |
| ATGCATATTCCGACGACACT+CGG | 0.487421 | 7_2:+29349972 | None:intergenic |
| GGGTCACAAATTGTGGTCAA+TGG | 0.488045 | 7_2:-29350180 | Msa1055310:CDS |
| ATATCCCAGTTGCTGCATAC+TGG | 0.495294 | 7_2:-29352599 | Msa1055310:CDS |
| TGCATATTCCGACGACACTC+GGG | 0.499131 | 7_2:+29349973 | None:intergenic |
| ATCAATTAATTAGTGTTAGG+AGG | 0.499886 | 7_2:+29349880 | None:intergenic |
| TCGTATCTATTGTCTTGTCT+CGG | 0.501696 | 7_2:+29351200 | None:intergenic |
| CCTTGTCTGTTAAGATTGAT+CGG | 0.504469 | 7_2:-29353076 | Msa1055310:CDS |
| TAAAGAAGAAACTCTTTGGA+AGG | 0.506286 | 7_2:-29350907 | Msa1055310:CDS |
| TTTGAGTTCTCACATTCAAT+GGG | 0.506462 | 7_2:-29350021 | Msa1055310:CDS |
| CTACAAGTGGGATGTTAAGT+TGG | 0.509788 | 7_2:-29352892 | Msa1055310:CDS |
| CTGATTCGACAGATTAAGGA+AGG | 0.511043 | 7_2:-29350552 | Msa1055310:intron |
| TGCTTGGGAGCTTTCAACAT+TGG | 0.511362 | 7_2:-29352025 | Msa1055310:CDS |
| CTCAAATATTGCGACTGTTG+TGG | 0.512636 | 7_2:+29352926 | None:intergenic |
| GGATCCAATACAACAAGAAT+CGG | 0.514899 | 7_2:+29351008 | None:intergenic |
| TCAATGTAATAAACTGTCCA+AGG | 0.516537 | 7_2:-29349723 | Msa1055310:three_prime_UTR |
| CTGAAGCTTATGGATTGCTA+AGG | 0.516789 | 7_2:-29351538 | Msa1055310:CDS |
| GTTTAAAGCAAATGCTGCTA+AGG | 0.517521 | 7_2:+29352863 | None:intergenic |
| GTCTTCAAGTTGATCAACAC+TGG | 0.519808 | 7_2:+29353136 | None:intergenic |
| CTTGTTGTATTGGATCCTCA+AGG | 0.520258 | 7_2:-29351002 | Msa1055310:CDS |
| GACAGAGAAGAGATGGTGAT+TGG | 0.523523 | 7_2:+29353640 | None:intergenic |
| TGCCTACACAAGCATGTTGG+AGG | 0.524812 | 7_2:-29353099 | Msa1055310:CDS |
| CCTCTTCAACATTATCATCA+TGG | 0.524927 | 7_2:+29349926 | None:intergenic |
| AGCAAAAGGGTCACAAATTG+TGG | 0.526965 | 7_2:-29350187 | Msa1055310:CDS |
| TCTTCCTTCTCAGTGCCTCA+AGG | 0.527809 | 7_2:+29351312 | None:intergenic |
| AGTTTCTACAACAAGACCCT+TGG | 0.528162 | 7_2:+29349706 | None:intergenic |
| AAAATCTCTTTACTCACAGC+TGG | 0.529976 | 7_2:-29350362 | Msa1055310:CDS |
| ACATCATAATCAAGTCCCTC+AGG | 0.531841 | 7_2:+29353450 | None:intergenic |
| TCATCAGATATTACATTCGC+AGG | 0.532077 | 7_2:+29353510 | None:intergenic |
| GCTACGACAAACAAGGCGGT+TGG | 0.534775 | 7_2:-29350218 | Msa1055310:CDS |
| ACTGCCTTGCTTATCAATGA+AGG | 0.536170 | 7_2:+29351071 | None:intergenic |
| AGTTCTCACATTCAATGGGA+AGG | 0.538806 | 7_2:-29350017 | Msa1055310:CDS |
| GCTCGTCGGTTGAGAACTCT+AGG | 0.540108 | 7_2:+29351267 | None:intergenic |
| AGATTGAGACAGAGAAGAGA+TGG | 0.545373 | 7_2:+29353633 | None:intergenic |
| GATTGATCGGATTTCTTGTG+AGG | 0.546451 | 7_2:-29353063 | Msa1055310:intron |
| TAGTGGACCAAACCTCTGAA+TGG | 0.548404 | 7_2:-29351160 | Msa1055310:CDS |
| ACGGAGGAGACGACCCTGAA+TGG | 0.549939 | 7_2:-29350512 | Msa1055310:CDS |
| TCTCGTGAAATGTATTGAGT+TGG | 0.551059 | 7_2:+29352651 | None:intergenic |
| TGTATTGGATCCTCAAGGGA+GGG | 0.553988 | 7_2:-29350997 | Msa1055310:CDS |
| GTTGGATTGTTCTAGCAAAA+GGG | 0.555014 | 7_2:-29350200 | Msa1055310:CDS |
| CTTGAATGCTCCATGATACC+AGG | 0.555831 | 7_2:+29352762 | None:intergenic |
| AAGCAAATGCTGCTAAGGCT+AGG | 0.558808 | 7_2:+29352868 | None:intergenic |
| AAAGATCATGCTGAACGAGT+TGG | 0.562674 | 7_2:-29350108 | Msa1055310:CDS |
| TCACGTGCCCCGAGTGTCGT+CGG | 0.563863 | 7_2:-29349981 | Msa1055310:CDS |
| ATCTTCATGTTGTCAGTGTG+TGG | 0.564623 | 7_2:+29351500 | None:intergenic |
| GGCTTTGATTTATTCACATG+AGG | 0.565489 | 7_2:-29351471 | Msa1055310:CDS |
| GCTTGTCGATGGCATTGACT+CGG | 0.574483 | 7_2:-29350862 | Msa1055310:CDS |
| TTGTTGTATTGGATCCTCAA+GGG | 0.577208 | 7_2:-29351001 | Msa1055310:CDS |
| GCGATTCTTAAGCAGTTACC+TGG | 0.577353 | 7_2:-29352780 | Msa1055310:CDS |
| ATTACAAGCCTCACTACACT+TGG | 0.579365 | 7_2:-29352543 | Msa1055310:CDS |
| AGACTTGAATTGCTTGTCGA+TGG | 0.580658 | 7_2:-29350873 | Msa1055310:CDS |
| ATCATGGCAGCACTGAAAAG+TGG | 0.581872 | 7_2:+29349942 | None:intergenic |
| TTGTATTGGATCCTCAAGGG+AGG | 0.583882 | 7_2:-29350998 | Msa1055310:CDS |
| TGAGCCTTGAGGCACTGAGA+AGG | 0.585698 | 7_2:-29351316 | Msa1055310:CDS |
| AGATGCTTACAATCTACAAG+TGG | 0.588400 | 7_2:-29352905 | Msa1055310:CDS |
| CTGGTCTATTAGAAGTATTG+TGG | 0.591915 | 7_2:-29352580 | Msa1055310:CDS |
| ACAGATCTATAACGAATCAA+AGG | 0.592872 | 7_2:-29351231 | Msa1055310:CDS |
| AGAAGCCCGAAAAGTAGCAC+AGG | 0.593107 | 7_2:-29350472 | Msa1055310:CDS |
| CCGATCAATCTTAACAGACA+AGG | 0.596956 | 7_2:+29353076 | None:intergenic |
| CTTCTTAGCTACGACAAACA+AGG | 0.597780 | 7_2:-29350225 | Msa1055310:CDS |
| GGGCTATGCAATAAACTGCA+TGG | 0.599388 | 7_2:+29349781 | None:intergenic |
| CCATGATGATAATGTTGAAG+AGG | 0.600515 | 7_2:-29349926 | Msa1055310:CDS |
| TCTTCAACGATATGTAGAAG+TGG | 0.605315 | 7_2:+29353423 | None:intergenic |
| GACACGTACACCGCTAGAGA+TGG | 0.608051 | 7_2:-29350448 | Msa1055310:CDS |
| ACATGCTTGTGTAGGCAGGA+AGG | 0.608112 | 7_2:+29353105 | None:intergenic |
| TCCTGCCTACACAAGCATGT+TGG | 0.608700 | 7_2:-29353102 | Msa1055310:CDS |
| AAACCAACTTGCAAAATCGA+TGG | 0.611326 | 7_2:-29352802 | Msa1055310:CDS |
| ATTGCAGATCATAATCCTGA+GGG | 0.611589 | 7_2:-29353465 | Msa1055310:CDS |
| AATCATGTTCAGAACTGCTG+AGG | 0.612635 | 7_2:+29353382 | None:intergenic |
| TTGTAGAAACTGGAGTACAT+TGG | 0.614315 | 7_2:-29349694 | Msa1055310:three_prime_UTR |
| CTAATGCTATTCACATGATG+TGG | 0.614448 | 7_2:-29350965 | Msa1055310:CDS |
| TTCGAGTATTAAAAGCTCGT+CGG | 0.618447 | 7_2:+29351253 | None:intergenic |
| TCATCCTTCATTGATAAGCA+AGG | 0.620107 | 7_2:-29351075 | Msa1055310:CDS |
| CAGTTCTGAACATGATTCAA+CGG | 0.622032 | 7_2:-29353376 | Msa1055310:intron |
| AACTCAATACATTTCACGAG+AGG | 0.629544 | 7_2:-29352649 | Msa1055310:CDS |
| AGAACTCAAATCTACAACAA+GGG | 0.635472 | 7_2:+29350034 | None:intergenic |
| TAGACCAGTATGCAGCAACT+GGG | 0.636843 | 7_2:+29352595 | None:intergenic |
| TGAAGCTTATGGATTGCTAA+GGG | 0.637375 | 7_2:-29351537 | Msa1055310:CDS |
| CAATGTAATAAACTGTCCAA+GGG | 0.639320 | 7_2:-29349722 | Msa1055310:three_prime_UTR |
| TGACAACATGAAGATCATCA+AGG | 0.643335 | 7_2:-29351492 | Msa1055310:CDS |
| GATATCTGCAAAATACACAT+TGG | 0.645540 | 7_2:-29351958 | Msa1055310:intron |
| TGACTCGGAAATATTGAACT+GGG | 0.646970 | 7_2:-29350847 | Msa1055310:intron |
| ATCATGTTCAGAACTGCTGA+GGG | 0.648501 | 7_2:+29353383 | None:intergenic |
| AATTGCAGATCATAATCCTG+AGG | 0.649424 | 7_2:-29353466 | Msa1055310:CDS |
| GGCCTCCAACATGCTTGTGT+AGG | 0.655722 | 7_2:+29353097 | None:intergenic |
| GGGCAAGCAACCCTCCCTTG+AGG | 0.656666 | 7_2:+29350987 | None:intergenic |
| ATGCAACAACTGATGAAAGG+TGG | 0.657551 | 7_2:-29353543 | Msa1055310:CDS |
| GATGCTTACAATCTACAAGT+GGG | 0.660888 | 7_2:-29352904 | Msa1055310:CDS |
| GAGAACTCAAATCTACAACA+AGG | 0.667294 | 7_2:+29350033 | None:intergenic |
| TGGTTGAGTATGATCTCATG+TGG | 0.669554 | 7_2:-29350131 | Msa1055310:CDS |
| GGATGATACACCGAAAACCA+TGG | 0.671266 | 7_2:+29351092 | None:intergenic |
| ACTCATAACCAAGTGTAGTG+AGG | 0.676352 | 7_2:+29352535 | None:intergenic |
| CCTACGTATACCATCTCTAG+CGG | 0.681871 | 7_2:+29350438 | None:intergenic |
| ATCTGCGAGAGAGTATGCCA+TGG | 0.684503 | 7_2:-29351109 | Msa1055310:CDS |
| GCTATGCAACAACTGATGAA+AGG | 0.685640 | 7_2:-29353546 | Msa1055310:CDS |
| CCGCTAGAGATGGTATACGT+AGG | 0.695174 | 7_2:-29350438 | Msa1055310:CDS |
| AAACAAACAGGTGAGCCTTG+AGG | 0.711245 | 7_2:-29351327 | Msa1055310:intron |
| ATTCACATGATGTGGATTTG+GGG | 0.712683 | 7_2:-29350957 | Msa1055310:CDS |
| CTTAGCTACGACAAACAAGG+CGG | 0.730750 | 7_2:-29350222 | Msa1055310:CDS |
| TCATTAAGCGTATCAAAACG+TGG | 0.736799 | 7_2:+29352729 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTAAATATAATATTTAAG+TGG | + | chr7_2:29351372-29351391 | None:intergenic | 10.0% |
| !! | ACTTAAATATTATATTTAGA+TGG | - | chr7_2:29351371-29351390 | Msa1055310:intron | 10.0% |
| !! | ACAATAATAATTAGTATAAT+CGG | + | chr7_2:29351941-29351960 | None:intergenic | 10.0% |
| !!! | TATAATGTATTTTTTCTTTC+AGG | - | chr7_2:29350132-29350151 | Msa1055310:CDS | 15.0% |
| !!! | ATAATGTATTTTTTCTTTCA+GGG | - | chr7_2:29350133-29350152 | Msa1055310:CDS | 15.0% |
| !! | TAAGTATTTAGAAATGTTAT+TGG | + | chr7_2:29351909-29351928 | None:intergenic | 15.0% |
| !!! | TTGTTGTTTTTTTTTTTTGA+AGG | - | chr7_2:29353446-29353465 | Msa1055310:CDS | 15.0% |
| !!! | AATTATTTTCTTCACCAAAA+TGG | + | chr7_2:29349818-29349837 | None:intergenic | 20.0% |
| !! | TATAACGAACAATATTTACT+TGG | + | chr7_2:29349989-29350008 | None:intergenic | 20.0% |
| !! | AATTACCTAAACAATATTCT+CGG | - | chr7_2:29350269-29350288 | Msa1055310:CDS | 20.0% |
| !!! | CACACAAAAATATTTTTTGT+AGG | - | chr7_2:29351411-29351430 | Msa1055310:intron | 20.0% |
| !!! | TCTTCTTTAAAACTTGTAAA+AGG | + | chr7_2:29352382-29352401 | None:intergenic | 20.0% |
| !! | CAGAAAAATAAATACGTAAT+AGG | + | chr7_2:29352731-29352750 | None:intergenic | 20.0% |
| !! | AAGATCAATTAATTAGTGTT+AGG | + | chr7_2:29353426-29353445 | None:intergenic | 20.0% |
| !!! | GTTGTTTGTTTTCATTATTT+TGG | - | chr7_2:29353479-29353498 | Msa1055310:CDS | 20.0% |
| !!! | TATTTTGGTTTTGTTGATTA+TGG | - | chr7_2:29353494-29353513 | Msa1055310:CDS | 20.0% |
| !! | AACAAACAAACAAACATTTA+GGG | + | chr7_2:29353542-29353561 | None:intergenic | 20.0% |
| !! | AAACAAACAAACAAACATTT+AGG | + | chr7_2:29353543-29353562 | None:intergenic | 20.0% |
| !! | AATATCTGATGATACCATTT+TGG | - | chr7_2:29349801-29349820 | Msa1055310:three_prime_UTR | 25.0% |
| ! | TTCGATTCTCAAAATTGTAA+CGG | - | chr7_2:29350027-29350046 | Msa1055310:CDS | 25.0% |
| ! | TGATCTAGTAAATGTCATAT+TGG | - | chr7_2:29350591-29350610 | Msa1055310:intron | 25.0% |
| ! | AAGACAAGTTAACAAACTTA+AGG | + | chr7_2:29350817-29350836 | None:intergenic | 25.0% |
| !! | TAAATCTTTTAGTCTCTGTT+TGG | + | chr7_2:29351159-29351178 | None:intergenic | 25.0% |
| ! | TATTAGCTAATAGTCAATCT+TGG | - | chr7_2:29351613-29351632 | Msa1055310:intron | 25.0% |
| ! | TTCAATGACCATCTTAAATT+AGG | + | chr7_2:29351722-29351741 | None:intergenic | 25.0% |
| ! | TATGATTAATGCAAACAAAC+AGG | - | chr7_2:29351961-29351980 | Msa1055310:CDS | 25.0% |
| !!! | AATGTGTTACTTCTATTTTC+AGG | - | chr7_2:29352010-29352029 | Msa1055310:CDS | 25.0% |
| !!! | TCTCAAATTGCATTTGTTTT+TGG | + | chr7_2:29352171-29352190 | None:intergenic | 25.0% |
| !!! | GTTTTAAAGAAGAAACTCTT+TGG | - | chr7_2:29352389-29352408 | Msa1055310:intron | 25.0% |
| ! | AGTACTAATTAACACAACTT+CGG | - | chr7_2:29352655-29352674 | Msa1055310:CDS | 25.0% |
| ! | TACGTAATAGGAAAATAGAT+TGG | + | chr7_2:29352719-29352738 | None:intergenic | 25.0% |
| ! | ATCAATTAATTAGTGTTAGG+AGG | + | chr7_2:29353423-29353442 | None:intergenic | 25.0% |
| !! | TTTACGCTTTTCTTTTTCGT+TGG | - | chr7_2:29349702-29349721 | Msa1055310:three_prime_UTR | 30.0% |
| ATTCAACGGTATGATTCTAA+CGG | - | chr7_2:29349938-29349957 | Msa1055310:CDS | 30.0% | |
| ! | AAGAGTATATCAGAAATTCG+AGG | + | chr7_2:29350067-29350086 | None:intergenic | 30.0% |
| TCAAACCGAGAATATTGTTT+AGG | + | chr7_2:29350277-29350296 | None:intergenic | 30.0% | |
| ATTTCCTACAAGATTCTTTC+TGG | - | chr7_2:29350337-29350356 | Msa1055310:CDS | 30.0% | |
| TATACCAGAAAGAATCTTGT+AGG | + | chr7_2:29350344-29350363 | None:intergenic | 30.0% | |
| TTGAAGTAGTTGCTCAAAAA+CGG | + | chr7_2:29350981-29351000 | None:intergenic | 30.0% | |
| ! | TTTCAAGCTTAGAAGTATAG+TGG | - | chr7_2:29351299-29351318 | Msa1055310:CDS | 30.0% |
| GATATCTGCAAAATACACAT+TGG | - | chr7_2:29351342-29351361 | Msa1055310:intron | 30.0% | |
| GTATAGAATCAGTGTTATCA+TGG | + | chr7_2:29351576-29351595 | None:intergenic | 30.0% | |
| !! | ACACTGATTCTATACATTGA+TGG | - | chr7_2:29351581-29351600 | Msa1055310:intron | 30.0% |
| TAGATTGATATATGCATGGA+TGG | + | chr7_2:29351656-29351675 | None:intergenic | 30.0% | |
| CAGATAGATTGATATATGCA+TGG | + | chr7_2:29351660-29351679 | None:intergenic | 30.0% | |
| CATGCATATATCAATCTATC+TGG | - | chr7_2:29351658-29351677 | Msa1055310:intron | 30.0% | |
| !! | TCTATCTGGTTTGATTCTTT+TGG | - | chr7_2:29351672-29351691 | Msa1055310:intron | 30.0% |
| ATTGAATGCAGAGAAAGAAA+TGG | - | chr7_2:29351736-29351755 | Msa1055310:intron | 30.0% | |
| ACAGATCTATAACGAATCAA+AGG | - | chr7_2:29352069-29352088 | Msa1055310:intron | 30.0% | |
| ACAATAGATACGAACTAGTT+TGG | - | chr7_2:29352110-29352129 | Msa1055310:intron | 30.0% | |
| ACATCATGTGAATAGCATTA+GGG | + | chr7_2:29352336-29352355 | None:intergenic | 30.0% | |
| TATTCACATGATGTGGATTT+GGG | - | chr7_2:29352342-29352361 | Msa1055310:intron | 30.0% | |
| TAAAGAAGAAACTCTTTGGA+AGG | - | chr7_2:29352393-29352412 | Msa1055310:intron | 30.0% | |
| TAGCATGAATGTACGAAAAA+GGG | + | chr7_2:29352517-29352536 | None:intergenic | 30.0% | |
| !! | TTTTCTGATTCGACAGATTA+AGG | - | chr7_2:29352744-29352763 | Msa1055310:CDS | 30.0% |
| !! | GGAAAGTACATTTTCTTGTA+CGG | - | chr7_2:29352769-29352788 | Msa1055310:CDS | 30.0% |
| CAAATCTCTTTATCCATTCA+GGG | + | chr7_2:29352804-29352823 | None:intergenic | 30.0% | |
| ACAAATCTCTTTATCCATTC+AGG | + | chr7_2:29352805-29352824 | None:intergenic | 30.0% | |
| !!! | TTTTGATTTCTTGCATCACA+AGG | + | chr7_2:29353053-29353072 | None:intergenic | 30.0% |
| ! | TTCAACTGGTTTACAATCAT+TGG | - | chr7_2:29353149-29353168 | Msa1055310:CDS | 30.0% |
| AGAACTCAAATCTACAACAA+GGG | + | chr7_2:29353269-29353288 | None:intergenic | 30.0% | |
| ! | ATTTGAGTTCTCACATTCAA+TGG | - | chr7_2:29353278-29353297 | Msa1055310:intron | 30.0% |
| ! | TTTGAGTTCTCACATTCAAT+GGG | - | chr7_2:29353279-29353298 | Msa1055310:intron | 30.0% |
| TCAATGTAATAAACTGTCCA+AGG | - | chr7_2:29353577-29353596 | Msa1055310:exon | 30.0% | |
| CAATGTAATAAACTGTCCAA+GGG | - | chr7_2:29353578-29353597 | Msa1055310:exon | 30.0% | |
| TTGGTTACAATGACTAGCAT+TGG | - | chr7_2:29349721-29349740 | Msa1055310:three_prime_UTR | 35.0% | |
| TCATCAGATATTACATTCGC+AGG | + | chr7_2:29349793-29349812 | None:intergenic | 35.0% | |
| AATTGCAGATCATAATCCTG+AGG | - | chr7_2:29349834-29349853 | Msa1055310:three_prime_UTR | 35.0% | |
| ATTGCAGATCATAATCCTGA+GGG | - | chr7_2:29349835-29349854 | Msa1055310:three_prime_UTR | 35.0% | |
| TCTTCAACGATATGTAGAAG+TGG | + | chr7_2:29349880-29349899 | None:intergenic | 35.0% | |
| !! | CAGTTCTGAACATGATTCAA+CGG | - | chr7_2:29349924-29349943 | Msa1055310:CDS | 35.0% |
| CCTTGTCTGTTAAGATTGAT+CGG | - | chr7_2:29350224-29350243 | Msa1055310:CDS | 35.0% | |
| AGATGCTTACAATCTACAAG+TGG | - | chr7_2:29350395-29350414 | Msa1055310:CDS | 35.0% | |
| GATGCTTACAATCTACAAGT+GGG | - | chr7_2:29350396-29350415 | Msa1055310:CDS | 35.0% | |
| ! | GTTTAAAGCAAATGCTGCTA+AGG | + | chr7_2:29350440-29350459 | None:intergenic | 35.0% |
| ! | GCAGCATTTGCTTTAAACTA+TGG | - | chr7_2:29350442-29350461 | Msa1055310:CDS | 35.0% |
| CTTTAAACTATGGCGAATTC+TGG | - | chr7_2:29350452-29350471 | Msa1055310:CDS | 35.0% | |
| AAACCAACTTGCAAAATCGA+TGG | - | chr7_2:29350498-29350517 | Msa1055310:CDS | 35.0% | |
| TCATTAAGCGTATCAAAACG+TGG | + | chr7_2:29350574-29350593 | None:intergenic | 35.0% | |
| GTTGAACTCAATGACACATT+TGG | + | chr7_2:29350623-29350642 | None:intergenic | 35.0% | |
| TCTCGTGAAATGTATTGAGT+TGG | + | chr7_2:29350652-29350671 | None:intergenic | 35.0% | |
| AACTCAATACATTTCACGAG+AGG | - | chr7_2:29350651-29350670 | Msa1055310:intron | 35.0% | |
| ! | ATGATTTGAGACAGTGTTGT+AGG | + | chr7_2:29350683-29350702 | None:intergenic | 35.0% |
| !! | CTGGTCTATTAGAAGTATTG+TGG | - | chr7_2:29350720-29350739 | Msa1055310:intron | 35.0% |
| TAAGGATATCGAGAAATGAC+AGG | + | chr7_2:29350799-29350818 | None:intergenic | 35.0% | |
| !! | CTTTAGACAAAAGCACTGTT+TGG | - | chr7_2:29350834-29350853 | Msa1055310:intron | 35.0% |
| AGATGTCTGATATACGCTAA+CGG | + | chr7_2:29350870-29350889 | None:intergenic | 35.0% | |
| ! | AACTATGCTATTTAGCAGCT+AGG | + | chr7_2:29351195-29351214 | None:intergenic | 35.0% |
| AGTGTTATCATGGAGTATAG+CGG | + | chr7_2:29351566-29351585 | None:intergenic | 35.0% | |
| TATGATGTGCATCTAAGCAT+TGG | - | chr7_2:29351696-29351715 | Msa1055310:intron | 35.0% | |
| !! | AGCATTGGCCTAATTTAAGA+TGG | - | chr7_2:29351711-29351730 | Msa1055310:intron | 35.0% |
| ! | TGAAGCTTATGGATTGCTAA+GGG | - | chr7_2:29351763-29351782 | Msa1055310:intron | 35.0% |
| TGACAACATGAAGATCATCA+AGG | - | chr7_2:29351808-29351827 | Msa1055310:intron | 35.0% | |
| ! | GGCTTTGATTTATTCACATG+AGG | - | chr7_2:29351829-29351848 | Msa1055310:intron | 35.0% |
| ! | GACATTTTACCTCTATACGA+TGG | - | chr7_2:29351851-29351870 | Msa1055310:intron | 35.0% |
| ! | TTTGAAACACCATCGTATAG+AGG | + | chr7_2:29351863-29351882 | None:intergenic | 35.0% |
| ACGATGGTGTTTCAAAGAAA+AGG | - | chr7_2:29351867-29351886 | Msa1055310:intron | 35.0% | |
| CGATGGTGTTTCAAAGAAAA+GGG | - | chr7_2:29351868-29351887 | Msa1055310:intron | 35.0% | |
| TTCGAGTATTAAAAGCTCGT+CGG | + | chr7_2:29352050-29352069 | None:intergenic | 35.0% | |
| TCGTATCTATTGTCTTGTCT+CGG | + | chr7_2:29352103-29352122 | None:intergenic | 35.0% | |
| TCATCCTTCATTGATAAGCA+AGG | - | chr7_2:29352225-29352244 | Msa1055310:intron | 35.0% | |
| ! | TTTGGTTCATACAGAGTGAA+TGG | - | chr7_2:29352254-29352273 | Msa1055310:intron | 35.0% |
| ! | TAAGCCGATTCTTGTTGTAT+TGG | - | chr7_2:29352288-29352307 | Msa1055310:intron | 35.0% |
| GGATCCAATACAACAAGAAT+CGG | + | chr7_2:29352295-29352314 | None:intergenic | 35.0% | |
| TTGTTGTATTGGATCCTCAA+GGG | - | chr7_2:29352299-29352318 | Msa1055310:intron | 35.0% | |
| CACATCATGTGAATAGCATT+AGG | + | chr7_2:29352337-29352356 | None:intergenic | 35.0% | |
| CTAATGCTATTCACATGATG+TGG | - | chr7_2:29352335-29352354 | Msa1055310:intron | 35.0% | |
| CTATTCACATGATGTGGATT+TGG | - | chr7_2:29352341-29352360 | Msa1055310:intron | 35.0% | |
| ATTCACATGATGTGGATTTG+GGG | - | chr7_2:29352343-29352362 | Msa1055310:intron | 35.0% | |
| !! | TTGACTCGGAAATATTGAAC+TGG | - | chr7_2:29352452-29352471 | Msa1055310:intron | 35.0% |
| ! | TGACTCGGAAATATTGAACT+GGG | - | chr7_2:29352453-29352472 | Msa1055310:intron | 35.0% |
| GTAGCATGAATGTACGAAAA+AGG | + | chr7_2:29352518-29352537 | None:intergenic | 35.0% | |
| ATTAACACAACTTCGGAACA+TGG | - | chr7_2:29352662-29352681 | Msa1055310:CDS | 35.0% | |
| TTAACACAACTTCGGAACAT+GGG | - | chr7_2:29352663-29352682 | Msa1055310:CDS | 35.0% | |
| ! | AAGTACATTTTCTTGTACGG+AGG | - | chr7_2:29352772-29352791 | Msa1055310:CDS | 35.0% |
| ! | TGTGAGTAAAGAGATTTTCG+CGG | + | chr7_2:29352936-29352955 | None:intergenic | 35.0% |
| AAAATCTCTTTACTCACAGC+TGG | - | chr7_2:29352938-29352957 | Msa1055310:CDS | 35.0% | |
| AAAGCATGATATGGTTCTTC+TGG | - | chr7_2:29352968-29352987 | Msa1055310:intron | 35.0% | |
| !! | GACTTGTTTCAGTTGGATTT+TGG | + | chr7_2:29353019-29353038 | None:intergenic | 35.0% |
| GTTGGATTGTTCTAGCAAAA+GGG | - | chr7_2:29353100-29353119 | Msa1055310:CDS | 35.0% | |
| ACAGCTTTCAAGGAACATTA+TGG | - | chr7_2:29353222-29353241 | Msa1055310:intron | 35.0% | |
| CAGCTTTCAAGGAACATTAT+GGG | - | chr7_2:29353223-29353242 | Msa1055310:intron | 35.0% | |
| GAGAACTCAAATCTACAACA+AGG | + | chr7_2:29353270-29353289 | None:intergenic | 35.0% | |
| CCTCTTCAACATTATCATCA+TGG | + | chr7_2:29353377-29353396 | None:intergenic | 35.0% | |
| ! | CCATGATGATAATGTTGAAG+AGG | - | chr7_2:29353374-29353393 | Msa1055310:intron | 35.0% |
| TTGTAGAAACTGGAGTACAT+TGG | - | chr7_2:29353606-29353625 | Msa1055310:five_prime_UTR | 35.0% | |
| AGATTGAGACAGAGAAGAGA+TGG | + | chr7_2:29349670-29349689 | None:intergenic | 40.0% | |
| !! | ATGACTAGCATTGGCAAGTT+AGG | - | chr7_2:29349730-29349749 | Msa1055310:three_prime_UTR | 40.0% |
| GCTATGCAACAACTGATGAA+AGG | - | chr7_2:29349754-29349773 | Msa1055310:three_prime_UTR | 40.0% | |
| ATGCAACAACTGATGAAAGG+TGG | - | chr7_2:29349757-29349776 | Msa1055310:three_prime_UTR | 40.0% | |
| ACATCATAATCAAGTCCCTC+AGG | + | chr7_2:29349853-29349872 | None:intergenic | 40.0% | |
| ATCATGTTCAGAACTGCTGA+GGG | + | chr7_2:29349920-29349939 | None:intergenic | 40.0% | |
| AATCATGTTCAGAACTGCTG+AGG | + | chr7_2:29349921-29349940 | None:intergenic | 40.0% | |
| TCAGAAATTCGAGGACTAGA+TGG | + | chr7_2:29350058-29350077 | None:intergenic | 40.0% | |
| !! | GTCTTCAAGTTGATCAACAC+TGG | + | chr7_2:29350167-29350186 | None:intergenic | 40.0% |
| CCGATCAATCTTAACAGACA+AGG | + | chr7_2:29350227-29350246 | None:intergenic | 40.0% | |
| GATTGATCGGATTTCTTGTG+AGG | - | chr7_2:29350237-29350256 | Msa1055310:CDS | 40.0% | |
| CTCAAATATTGCGACTGTTG+TGG | + | chr7_2:29350377-29350396 | None:intergenic | 40.0% | |
| CTACAAGTGGGATGTTAAGT+TGG | - | chr7_2:29350408-29350427 | Msa1055310:CDS | 40.0% | |
| TAAGCAGTTACCTGGTATCA+TGG | - | chr7_2:29350528-29350547 | Msa1055310:CDS | 40.0% | |
| ATTACAAGCCTCACTACACT+TGG | - | chr7_2:29350757-29350776 | Msa1055310:intron | 40.0% | |
| ACTCATAACCAAGTGTAGTG+AGG | + | chr7_2:29350768-29350787 | None:intergenic | 40.0% | |
| GCTGTCAGTTATAAGTTCGT+CGG | - | chr7_2:29351116-29351135 | Msa1055310:CDS | 40.0% | |
| TCTTCACCTCTAATGATGCT+TGG | - | chr7_2:29351259-29351278 | Msa1055310:CDS | 40.0% | |
| CTTCACCTCTAATGATGCTT+GGG | - | chr7_2:29351260-29351279 | Msa1055310:CDS | 40.0% | |
| TCTCAAACAACGACAATGTC+AGG | - | chr7_2:29351505-29351524 | Msa1055310:CDS | 40.0% | |
| GAAATGGATGCTGAAGCTTA+TGG | - | chr7_2:29351752-29351771 | Msa1055310:intron | 40.0% | |
| ! | CTGAAGCTTATGGATTGCTA+AGG | - | chr7_2:29351762-29351781 | Msa1055310:intron | 40.0% |
| ATCTTCATGTTGTCAGTGTG+TGG | + | chr7_2:29351803-29351822 | None:intergenic | 40.0% | |
| ! | ACTAGTTTGGATCCCAATAG+TGG | - | chr7_2:29352123-29352142 | Msa1055310:intron | 40.0% |
| !! | TTTTTGGTCTGTCCATTCAG+AGG | + | chr7_2:29352155-29352174 | None:intergenic | 40.0% |
| !! | AGAGAGTATGCCATGGTTTT+CGG | - | chr7_2:29352198-29352217 | Msa1055310:intron | 40.0% |
| ACTGCCTTGCTTATCAATGA+AGG | + | chr7_2:29352232-29352251 | None:intergenic | 40.0% | |
| TGATAAGCAAGGCAGTTGTT+TGG | - | chr7_2:29352236-29352255 | Msa1055310:intron | 40.0% | |
| ! | CTTGTTGTATTGGATCCTCA+AGG | - | chr7_2:29352298-29352317 | Msa1055310:intron | 40.0% |
| AGACTTGAATTGCTTGTCGA+TGG | - | chr7_2:29352427-29352446 | Msa1055310:intron | 40.0% | |
| ! | GAATGCAGCAATGTGGTTTT+GGG | + | chr7_2:29352558-29352577 | None:intergenic | 40.0% |
| ! | TGAATGCAGCAATGTGGTTT+TGG | + | chr7_2:29352559-29352578 | None:intergenic | 40.0% |
| AACCACATTGCTGCATTCAT+TGG | - | chr7_2:29352560-29352579 | Msa1055310:CDS | 40.0% | |
| CATTGGAGGAATGAATGCTA+TGG | - | chr7_2:29352577-29352596 | Msa1055310:CDS | 40.0% | |
| ! | CTGATTCGACAGATTAAGGA+AGG | - | chr7_2:29352748-29352767 | Msa1055310:CDS | 40.0% |
| GGTCAGAACAAAGCATGATA+TGG | - | chr7_2:29352959-29352978 | Msa1055310:CDS | 40.0% | |
| !! | TTTTGGAGAAGAGCATGCTT+TGG | + | chr7_2:29353002-29353021 | None:intergenic | 40.0% |
| !! | TGTCATCGACTTGTTTCAGT+TGG | + | chr7_2:29353026-29353045 | None:intergenic | 40.0% |
| CTTCTTAGCTACGACAAACA+AGG | - | chr7_2:29353075-29353094 | Msa1055310:CDS | 40.0% | |
| GGTTGGATTGTTCTAGCAAA+AGG | - | chr7_2:29353099-29353118 | Msa1055310:CDS | 40.0% | |
| AGCAAAAGGGTCACAAATTG+TGG | - | chr7_2:29353113-29353132 | Msa1055310:CDS | 40.0% | |
| TGGTTGAGTATGATCTCATG+TGG | - | chr7_2:29353169-29353188 | Msa1055310:intron | 40.0% | |
| AAAGATCATGCTGAACGAGT+TGG | - | chr7_2:29353192-29353211 | Msa1055310:intron | 40.0% | |
| TGGTTTCGAAACAGCTTTCA+AGG | - | chr7_2:29353212-29353231 | Msa1055310:intron | 40.0% | |
| AGTTCTCACATTCAATGGGA+AGG | - | chr7_2:29353283-29353302 | Msa1055310:intron | 40.0% | |
| AGTTTCTACAACAAGACCCT+TGG | + | chr7_2:29353597-29353616 | None:intergenic | 40.0% | |
| !! | AAGGGTCTTGTTGTAGAAAC+TGG | - | chr7_2:29353596-29353615 | Msa1055310:five_prime_UTR | 40.0% |
| GACAGAGAAGAGATGGTGAT+TGG | + | chr7_2:29349663-29349682 | None:intergenic | 45.0% | |
| AAGCAAATGCTGCTAAGGCT+AGG | + | chr7_2:29350435-29350454 | None:intergenic | 45.0% | |
| !!! | TCGCCATCGATTTTGCAAGT+TGG | + | chr7_2:29350504-29350523 | None:intergenic | 45.0% |
| GCGATTCTTAAGCAGTTACC+TGG | - | chr7_2:29350520-29350539 | Msa1055310:CDS | 45.0% | |
| CTTGAATGCTCCATGATACC+AGG | + | chr7_2:29350541-29350560 | None:intergenic | 45.0% | |
| ATATCCCAGTTGCTGCATAC+TGG | - | chr7_2:29350701-29350720 | Msa1055310:intron | 45.0% | |
| TAGACCAGTATGCAGCAACT+GGG | + | chr7_2:29350708-29350727 | None:intergenic | 45.0% | |
| ATAGACCAGTATGCAGCAAC+TGG | + | chr7_2:29350709-29350728 | None:intergenic | 45.0% | |
| !! | GACAAAAGCACTGTTTGGCA+AGG | - | chr7_2:29350839-29350858 | Msa1055310:intron | 45.0% |
| AAGCTCCCAAGCATCATTAG+AGG | + | chr7_2:29351268-29351287 | None:intergenic | 45.0% | |
| TGCTTGGGAGCTTTCAACAT+TGG | - | chr7_2:29351275-29351294 | Msa1055310:CDS | 45.0% | |
| GGATCATCTCAGAAAGCAAC+TGG | - | chr7_2:29351320-29351339 | Msa1055310:CDS | 45.0% | |
| AAACAAACAGGTGAGCCTTG+AGG | - | chr7_2:29351973-29351992 | Msa1055310:CDS | 45.0% | |
| ! | CAGAGGTTTGGTCCACTATT+GGG | + | chr7_2:29352138-29352157 | None:intergenic | 45.0% |
| ! | TCAGAGGTTTGGTCCACTAT+TGG | + | chr7_2:29352139-29352158 | None:intergenic | 45.0% |
| ! | TAGTGGACCAAACCTCTGAA+TGG | - | chr7_2:29352140-29352159 | Msa1055310:intron | 45.0% |
| GGATGATACACCGAAAACCA+TGG | + | chr7_2:29352211-29352230 | None:intergenic | 45.0% | |
| TTGTATTGGATCCTCAAGGG+AGG | - | chr7_2:29352302-29352321 | Msa1055310:intron | 45.0% | |
| TGTATTGGATCCTCAAGGGA+GGG | - | chr7_2:29352303-29352322 | Msa1055310:intron | 45.0% | |
| ! | CTCTTTGGAAGGATGAGACT+TGG | - | chr7_2:29352404-29352423 | Msa1055310:intron | 45.0% |
| CTCCAATGAATGCAGCAATG+TGG | + | chr7_2:29352565-29352584 | None:intergenic | 45.0% | |
| CACATTGCTGCATTCATTGG+AGG | - | chr7_2:29352563-29352582 | Msa1055310:CDS | 45.0% | |
| CCTACGTATACCATCTCTAG+CGG | + | chr7_2:29352865-29352884 | None:intergenic | 45.0% | |
| CTTAGCTACGACAAACAAGG+CGG | - | chr7_2:29353078-29353097 | Msa1055310:CDS | 45.0% | |
| GGGTCACAAATTGTGGTCAA+TGG | - | chr7_2:29353120-29353139 | Msa1055310:CDS | 45.0% | |
| GTCAATGGACATGCTTCAAC+TGG | - | chr7_2:29353135-29353154 | Msa1055310:CDS | 45.0% | |
| ATGCATATTCCGACGACACT+CGG | + | chr7_2:29353331-29353350 | None:intergenic | 45.0% | |
| ! | ATCATGGCAGCACTGAAAAG+TGG | + | chr7_2:29353361-29353380 | None:intergenic | 45.0% |
| GGGCTATGCAATAAACTGCA+TGG | + | chr7_2:29353522-29353541 | None:intergenic | 45.0% | |
| ACATGCTTGTGTAGGCAGGA+AGG | + | chr7_2:29350198-29350217 | None:intergenic | 50.0% | |
| TCCTGCCTACACAAGCATGT+TGG | - | chr7_2:29350198-29350217 | Msa1055310:CDS | 50.0% | |
| TCCAACATGCTTGTGTAGGC+AGG | + | chr7_2:29350202-29350221 | None:intergenic | 50.0% | |
| TGCCTACACAAGCATGTTGG+AGG | - | chr7_2:29350201-29350220 | Msa1055310:CDS | 50.0% | |
| TCTTCCTTCTCAGTGCCTCA+AGG | + | chr7_2:29351991-29352010 | None:intergenic | 50.0% | |
| GGTCTGTCCATTCAGAGGTT+TGG | + | chr7_2:29352150-29352169 | None:intergenic | 50.0% | |
| ! | ATCTGCGAGAGAGTATGCCA+TGG | - | chr7_2:29352191-29352210 | Msa1055310:intron | 50.0% |
| !! | GCTTGTCGATGGCATTGACT+CGG | - | chr7_2:29352438-29352457 | Msa1055310:intron | 50.0% |
| AGAAGCCCGAAAAGTAGCAC+AGG | - | chr7_2:29352828-29352847 | Msa1055310:CDS | 50.0% | |
| !!! | TGTCGCCTGTGCTACTTTTC+GGG | + | chr7_2:29352836-29352855 | None:intergenic | 50.0% |
| !!! | GTGTCGCCTGTGCTACTTTT+CGG | + | chr7_2:29352837-29352856 | None:intergenic | 50.0% |
| CCGCTAGAGATGGTATACGT+AGG | - | chr7_2:29352862-29352881 | Msa1055310:CDS | 50.0% | |
| TGCATATTCCGACGACACTC+GGG | + | chr7_2:29353330-29353349 | None:intergenic | 50.0% | |
| GGCCTCCAACATGCTTGTGT+AGG | + | chr7_2:29350206-29350225 | None:intergenic | 55.0% | |
| !! | TGAGCCTTGAGGCACTGAGA+AGG | - | chr7_2:29351984-29352003 | Msa1055310:CDS | 55.0% |
| ! | GCTCGTCGGTTGAGAACTCT+AGG | + | chr7_2:29352036-29352055 | None:intergenic | 55.0% |
| GACACGTACACCGCTAGAGA+TGG | - | chr7_2:29352852-29352871 | Msa1055310:CDS | 55.0% | |
| GCTACGACAAACAAGGCGGT+TGG | - | chr7_2:29353082-29353101 | Msa1055310:CDS | 55.0% | |
| GCATATTCCGACGACACTCG+GGG | + | chr7_2:29353329-29353348 | None:intergenic | 55.0% | |
| ACGGAGGAGACGACCCTGAA+TGG | - | chr7_2:29352788-29352807 | Msa1055310:CDS | 60.0% | |
| GGGCAAGCAACCCTCCCTTG+AGG | + | chr7_2:29352316-29352335 | None:intergenic | 65.0% | |
| TCGGGGCACGTGAGTCGATC+AGG | + | chr7_2:29353312-29353331 | None:intergenic | 65.0% | |
| ! | TCACGTGCCCCGAGTGTCGT+CGG | - | chr7_2:29353319-29353338 | Msa1055310:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 29349658 | 29353664 | 29349658 | ID=Msa1055310;Name=Msa1055310 |
| chr7_2 | mRNA | 29349658 | 29353664 | 29349658 | ID=Msa1055310-mRNA-1;Parent=Msa1055310;Name=Msa1055310-mRNA-1;_AED=0.08;_eAED=0.08;_QI=72|1|1|1|1|1|7|227|729 |
| chr7_2 | exon | 29349658 | 29350562 | 29349658 | ID=Msa1055310-mRNA-1:exon:6057;Parent=Msa1055310-mRNA-1 |
| chr7_2 | exon | 29350848 | 29351339 | 29350848 | ID=Msa1055310-mRNA-1:exon:6056;Parent=Msa1055310-mRNA-1 |
| chr7_2 | exon | 29351433 | 29351575 | 29351433 | ID=Msa1055310-mRNA-1:exon:6055;Parent=Msa1055310-mRNA-1 |
| chr7_2 | exon | 29351959 | 29352065 | 29351959 | ID=Msa1055310-mRNA-1:exon:6054;Parent=Msa1055310-mRNA-1 |
| chr7_2 | exon | 29352537 | 29352985 | 29352537 | ID=Msa1055310-mRNA-1:exon:6053;Parent=Msa1055310-mRNA-1 |
| chr7_2 | exon | 29353064 | 29353168 | 29353064 | ID=Msa1055310-mRNA-1:exon:6052;Parent=Msa1055310-mRNA-1 |
| chr7_2 | exon | 29353377 | 29353664 | 29353377 | ID=Msa1055310-mRNA-1:exon:6051;Parent=Msa1055310-mRNA-1 |
| chr7_2 | five_prime_UTR | 29353593 | 29353664 | 29353593 | ID=Msa1055310-mRNA-1:five_prime_utr;Parent=Msa1055310-mRNA-1 |
| chr7_2 | CDS | 29353377 | 29353592 | 29353377 | ID=Msa1055310-mRNA-1:cds;Parent=Msa1055310-mRNA-1 |
| chr7_2 | CDS | 29353064 | 29353168 | 29353064 | ID=Msa1055310-mRNA-1:cds;Parent=Msa1055310-mRNA-1 |
| chr7_2 | CDS | 29352537 | 29352985 | 29352537 | ID=Msa1055310-mRNA-1:cds;Parent=Msa1055310-mRNA-1 |
| chr7_2 | CDS | 29351959 | 29352065 | 29351959 | ID=Msa1055310-mRNA-1:cds;Parent=Msa1055310-mRNA-1 |
| chr7_2 | CDS | 29351433 | 29351575 | 29351433 | ID=Msa1055310-mRNA-1:cds;Parent=Msa1055310-mRNA-1 |
| chr7_2 | CDS | 29350848 | 29351339 | 29350848 | ID=Msa1055310-mRNA-1:cds;Parent=Msa1055310-mRNA-1 |
| chr7_2 | CDS | 29349885 | 29350562 | 29349885 | ID=Msa1055310-mRNA-1:cds;Parent=Msa1055310-mRNA-1 |
| chr7_2 | three_prime_UTR | 29349658 | 29349884 | 29349658 | ID=Msa1055310-mRNA-1:three_prime_utr;Parent=Msa1055310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
