Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212570 | CAB65282.1 | 99.038 | 208 | 2 | 0 | 1 | 208 | 1 | 208 | 5.74e-136 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212570 | Q9SBR7 | 99.038 | 208 | 2 | 0 | 1 | 208 | 1 | 208 | 2.74e-136 | 389 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0212570 | Msa0253010 | 0.833623 | 4.796361e-56 | -8.615850e-47 |
| Msa0212570 | Msa0672980 | 0.809429 | 1.900539e-50 | -8.615850e-47 |
| Msa0212570 | Msa1402300 | 0.800951 | 1.132569e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212570 | MtrunA17_Chr2g0311901 | 85.366 | 205 | 23 | 2 | 10 | 209 | 18 | 220 | 1.45e-98 | 285 |
| Msa0212570 | MtrunA17_Chr2g0311911 | 69.663 | 89 | 27 | 0 | 101 | 189 | 27 | 115 | 1.47e-33 | 117 |
| Msa0212570 | MtrunA17_Chr2g0311911 | 56.701 | 97 | 42 | 0 | 9 | 105 | 17 | 113 | 3.03e-25 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGACTGGGGAGGCTCATTT+TGG | 0.192844 | 2_1:-54736823 | Msa0212570:CDS |
| GTGATTGGGGAGGCTCATTC+TGG | 0.210600 | 2_1:-54736949 | Msa0212570:CDS |
| AACCTTCTGTTACACTTTCA+TGG | 0.231090 | 2_1:+54736849 | None:intergenic |
| GAGATTGGGGAGGCTCATTC+TGG | 0.253976 | 2_1:-54738013 | Msa0212570:CDS |
| GAGACTGGGGAGGATCATTC+TGG | 0.264871 | 2_1:-54737782 | Msa0212570:CDS |
| AACTGATGGTTGGCGTGATT+GGG | 0.322774 | 2_1:-54736963 | Msa0212570:CDS |
| TAACAGAAGGTTGGAGAGAC+TGG | 0.323117 | 2_1:-54736838 | Msa0212570:CDS |
| GGTAAAGGTGCAAAAGAAAA+AGG | 0.335620 | 2_1:-54736878 | Msa0212570:CDS |
| GAATTGATAGTTGGCGAGAT+TGG | 0.340509 | 2_1:-54738028 | Msa0212570:CDS |
| GAATTGATAGTTGGCGAGAC+TGG | 0.348080 | 2_1:-54737797 | Msa0212570:CDS |
| GAACTGATGGTTGGCGTGAT+TGG | 0.362389 | 2_1:-54736964 | Msa0212570:CDS |
| TATACATTGATTCTCATCAT+TGG | 0.371487 | 2_1:+54738162 | None:intergenic |
| AATTGATAGTTGGCGAGATT+GGG | 0.375511 | 2_1:-54738027 | Msa0212570:CDS |
| GGAGGATCATTCTGGGGATC+TGG | 0.411167 | 2_1:-54737774 | Msa0212570:CDS |
| GAAGATGGACAAAAGAATAA+TGG | 0.456271 | 2_1:-54736926 | Msa0212570:CDS |
| GAAGATGGACAAGAGAATAA+TGG | 0.457372 | 2_1:-54737990 | Msa0212570:CDS |
| AGTGGAAGAGACAACATAGA+TGG | 0.458620 | 2_1:-54736731 | Msa0212570:CDS |
| TGATTGGGGAGGCTCATTCT+GGG | 0.483330 | 2_1:-54736948 | Msa0212570:CDS |
| AGAGAATAATGGTGGAGGTG+AGG | 0.487583 | 2_1:-54737748 | Msa0212570:CDS |
| TACTACTTCTTATCTCTACC+AGG | 0.489271 | 2_1:-54738198 | Msa0212570:CDS |
| GGATCTGGAGAAGAGAATAA+TGG | 0.489520 | 2_1:-54737759 | Msa0212570:CDS |
| AGACTGGGGAGGATCATTCT+GGG | 0.489594 | 2_1:-54737781 | Msa0212570:CDS |
| AAAGAAAGTGCACATGGAAA+AGG | 0.490392 | 2_1:-54736767 | Msa0212570:CDS |
| CAAAAGTAGGAATTGATAGT+TGG | 0.491040 | 2_1:-54738037 | Msa0212570:CDS |
| AATTGATAGTTGGCGAGACT+GGG | 0.496285 | 2_1:-54737796 | Msa0212570:CDS |
| AGATTGGGGAGGCTCATTCT+GGG | 0.497139 | 2_1:-54738012 | Msa0212570:CDS |
| AAAGAATCCAAAACAAAAGT+AGG | 0.499512 | 2_1:-54738050 | Msa0212570:CDS |
| ATTGATAGTTGGCGAGATTG+GGG | 0.501662 | 2_1:-54738026 | Msa0212570:CDS |
| AATGGTGGAGGTGAGGAAGA+AGG | 0.509154 | 2_1:-54737741 | Msa0212570:CDS |
| AACAGAAGGTTGGAGAGACT+GGG | 0.521661 | 2_1:-54736837 | Msa0212570:CDS |
| GGAGGCTCATTCTGGGAAGA+TGG | 0.522549 | 2_1:-54736941 | Msa0212570:CDS |
| GGAGGCTCATTCTGGGAAGA+TGG | 0.522549 | 2_1:-54738005 | Msa0212570:CDS |
| ACTGATGGTTGGCGTGATTG+GGG | 0.549770 | 2_1:-54736962 | Msa0212570:CDS |
| ACAGAAGGTGGACAAGGTAA+AGG | 0.550489 | 2_1:-54736893 | Msa0212570:CDS |
| ATAGATGGATACAGTGGTAG+AGG | 0.550928 | 2_1:-54736716 | Msa0212570:CDS |
| GGAGAAGAGAATAATGGTGG+AGG | 0.557925 | 2_1:-54737753 | Msa0212570:CDS |
| AAAGAAGGTGGAGAAAGTAA+AGG | 0.562819 | 2_1:-54737957 | Msa0212570:intron |
| GATGGACAAAAGAATAATGG+TGG | 0.565324 | 2_1:-54736923 | Msa0212570:CDS |
| ATGAAAGTGTAACAGAAGGT+TGG | 0.567802 | 2_1:-54736847 | Msa0212570:CDS |
| GATGAGAAAGAGAATGTTGG+TGG | 0.571583 | 2_1:-54736797 | Msa0212570:CDS |
| AAAGGTGAAGACAACGAAAG+TGG | 0.578443 | 2_1:-54736749 | Msa0212570:CDS |
| GGTGGAAGTGACAAAGAAGG+TGG | 0.584359 | 2_1:-54737969 | Msa0212570:CDS |
| GATGGACAAGAGAATAATGG+TGG | 0.590325 | 2_1:-54737987 | Msa0212570:CDS |
| GTCCATGAAAGTGTAACAGA+AGG | 0.596678 | 2_1:-54736851 | Msa0212570:CDS |
| TCTGGAGAAGAGAATAATGG+TGG | 0.606280 | 2_1:-54737756 | Msa0212570:CDS |
| AATGGTGGAAGTGACAAAGA+AGG | 0.608395 | 2_1:-54737972 | Msa0212570:CDS |
| GGACAAAAGAATAATGGTGG+AGG | 0.609522 | 2_1:-54736920 | Msa0212570:CDS |
| ATTGGATGTCTGAATTGCCC+TGG | 0.610328 | 2_1:+54738180 | None:intergenic |
| GGTGAGGAAGAAGGCGAACA+AGG | 0.618428 | 2_1:-54737732 | Msa0212570:intron |
| ACTACTTCTTATCTCTACCA+GGG | 0.631903 | 2_1:-54738197 | Msa0212570:CDS |
| GATGGTTGGCGTGATTGGGG+AGG | 0.633075 | 2_1:-54736959 | Msa0212570:CDS |
| GACGATGAGAAAGAGAATGT+TGG | 0.639601 | 2_1:-54736800 | Msa0212570:CDS |
| AATGGTGGAGGTGACACAGA+AGG | 0.640622 | 2_1:-54736908 | Msa0212570:CDS |
| GATAGTTGGCGAGATTGGGG+AGG | 0.641171 | 2_1:-54738023 | Msa0212570:CDS |
| GATAGTTGGCGAGACTGGGG+AGG | 0.651795 | 2_1:-54737792 | Msa0212570:CDS |
| ATTGATAGTTGGCGAGACTG+GGG | 0.652868 | 2_1:-54737795 | Msa0212570:CDS |
| GGTGGAGGTGACACAGAAGG+TGG | 0.656244 | 2_1:-54736905 | Msa0212570:CDS |
| ATAAACAAAGAAAGTGCACA+TGG | 0.656785 | 2_1:-54736773 | Msa0212570:CDS |
| GGTGACACAGAAGGTGGACA+AGG | 0.666383 | 2_1:-54736899 | Msa0212570:CDS |
| GACTGGGGAGGATCATTCTG+GGG | 0.672974 | 2_1:-54737780 | Msa0212570:CDS |
| ACAGAAGGTTGGAGAGACTG+GGG | 0.696017 | 2_1:-54736836 | Msa0212570:CDS |
| GACAACATAGATGGATACAG+TGG | 0.696899 | 2_1:-54736722 | Msa0212570:CDS |
| GAAGGTTGGAGAGACTGGGG+AGG | 0.706547 | 2_1:-54736833 | Msa0212570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGATAATATATATCATT+TGG | + | chr2_1:54737601-54737620 | None:intergenic | 10.0% |
| !! | AAATGATAATATATATCATT+TGG | + | chr2_1:54737601-54737620 | None:intergenic | 10.0% |
| !! | TAAACCATGAAAAAAATATT+AGG | + | chr2_1:54737358-54737377 | None:intergenic | 15.0% |
| !! | AAGAATAAAATTATCTTGTT+TGG | + | chr2_1:54737646-54737665 | None:intergenic | 15.0% |
| !! | ATTTGACTACAATATAATAT+TGG | - | chr2_1:54737719-54737738 | Msa0212570:intron | 15.0% |
| !!! | AATATAATATTGGTTAATCA+AGG | - | chr2_1:54737729-54737748 | Msa0212570:intron | 15.0% |
| !! | TAAACCATGAAAAAAATATT+AGG | + | chr2_1:54737358-54737377 | None:intergenic | 15.0% |
| !! | AAGAATAAAATTATCTTGTT+TGG | + | chr2_1:54737646-54737665 | None:intergenic | 15.0% |
| !! | ATTTGACTACAATATAATAT+TGG | - | chr2_1:54737719-54737738 | Msa0212570:intron | 15.0% |
| !!! | AATATAATATTGGTTAATCA+AGG | - | chr2_1:54737729-54737748 | Msa0212570:intron | 15.0% |
| !! | AAAGAATCCAAAACAAAAAT+AGG | - | chr2_1:54737101-54737120 | Msa0212570:intron | 20.0% |
| !!! | ATCAATTCCTATTTTTGTTT+TGG | + | chr2_1:54737111-54737130 | None:intergenic | 20.0% |
| !! | AAGATAAGTGATGAAATAAA+TGG | - | chr2_1:54737312-54737331 | Msa0212570:intron | 20.0% |
| !!! | TGATCCTAATATTTTTTTCA+TGG | - | chr2_1:54737351-54737370 | Msa0212570:intron | 20.0% |
| !!! | TTTTCATGGTTTAGATAAAT+TGG | - | chr2_1:54737365-54737384 | Msa0212570:intron | 20.0% |
| !!! | TGGTATTTTCTTTAATATCA+TGG | + | chr2_1:54737451-54737470 | None:intergenic | 20.0% |
| !! | AGAAATTGAAAGGTTATATT+GGG | + | chr2_1:54737540-54737559 | None:intergenic | 20.0% |
| !! | AGAGAATTCAAAACAAAAAT+AGG | - | chr2_1:54737934-54737953 | Msa0212570:intron | 20.0% |
| !! | AAAGAATCCAAAACAAAAAT+AGG | - | chr2_1:54737101-54737120 | Msa0212570:intron | 20.0% |
| !!! | ATCAATTCCTATTTTTGTTT+TGG | + | chr2_1:54737111-54737130 | None:intergenic | 20.0% |
| !! | AAGATAAGTGATGAAATAAA+TGG | - | chr2_1:54737312-54737331 | Msa0212570:intron | 20.0% |
| !!! | TGATCCTAATATTTTTTTCA+TGG | - | chr2_1:54737351-54737370 | Msa0212570:intron | 20.0% |
| !!! | TTTTCATGGTTTAGATAAAT+TGG | - | chr2_1:54737365-54737384 | Msa0212570:intron | 20.0% |
| !!! | TGGTATTTTCTTTAATATCA+TGG | + | chr2_1:54737451-54737470 | None:intergenic | 20.0% |
| !! | AGAAATTGAAAGGTTATATT+GGG | + | chr2_1:54737540-54737559 | None:intergenic | 20.0% |
| !! | AGAGAATTCAAAACAAAAAT+AGG | - | chr2_1:54737934-54737953 | Msa0212570:intron | 20.0% |
| !!! | TATACATTGATTCTCATCAT+TGG | + | chr2_1:54736761-54736780 | None:intergenic | 25.0% |
| !!! | AGTGTTTTTTGATTTGTAGT+TGG | - | chr2_1:54736840-54736859 | Msa0212570:CDS | 25.0% |
| ! | AAAGAATCCAAAACAAAAGT+AGG | - | chr2_1:54736870-54736889 | Msa0212570:CDS | 25.0% |
| !!! | ATCAATTCCTACTTTTGTTT+TGG | + | chr2_1:54736880-54736899 | None:intergenic | 25.0% |
| !! | AATCTTATGTCACATTTTCA+TGG | + | chr2_1:54737010-54737029 | None:intergenic | 25.0% |
| !! | CAAAAATAGGAATTGATAGT+TGG | - | chr2_1:54737114-54737133 | Msa0212570:intron | 25.0% |
| ! | TAGCAGATACTAATATTCAA+TGG | - | chr2_1:54737220-54737239 | Msa0212570:intron | 25.0% |
| ! | TTTCTTTCTGATGACTATTA+TGG | - | chr2_1:54737407-54737426 | Msa0212570:intron | 25.0% |
| ! | TAACAAGTGATTAAGATGTT+TGG | + | chr2_1:54737471-54737490 | None:intergenic | 25.0% |
| ! | GAGAAATTGAAAGGTTATAT+TGG | + | chr2_1:54737541-54737560 | None:intergenic | 25.0% |
| ! | TAACCTTTCAATTTCTCAAT+AGG | - | chr2_1:54737544-54737563 | Msa0212570:intron | 25.0% |
| !! | ATGCTATTTATAGAGATCAT+TGG | + | chr2_1:54737685-54737704 | None:intergenic | 25.0% |
| !! | TACTATTTCTTATCTCTACT+AGG | - | chr2_1:54737792-54737811 | Msa0212570:CDS | 25.0% |
| !! | ACTATTTCTTATCTCTACTA+GGG | - | chr2_1:54737793-54737812 | Msa0212570:CDS | 25.0% |
| !!! | TTACTTTTTTGATTCACAGT+TGG | - | chr2_1:54737904-54737923 | Msa0212570:intron | 25.0% |
| ! | AAAACAAAAATAGGAACTGA+TGG | - | chr2_1:54737943-54737962 | Msa0212570:intron | 25.0% |
| !!! | TATACATTGATTCTCATCAT+TGG | + | chr2_1:54736761-54736780 | None:intergenic | 25.0% |
| !!! | AGTGTTTTTTGATTTGTAGT+TGG | - | chr2_1:54736840-54736859 | Msa0212570:CDS | 25.0% |
| ! | AAAGAATCCAAAACAAAAGT+AGG | - | chr2_1:54736870-54736889 | Msa0212570:CDS | 25.0% |
| !!! | ATCAATTCCTACTTTTGTTT+TGG | + | chr2_1:54736880-54736899 | None:intergenic | 25.0% |
| !! | AATCTTATGTCACATTTTCA+TGG | + | chr2_1:54737010-54737029 | None:intergenic | 25.0% |
| !! | CAAAAATAGGAATTGATAGT+TGG | - | chr2_1:54737114-54737133 | Msa0212570:intron | 25.0% |
| ! | TAGCAGATACTAATATTCAA+TGG | - | chr2_1:54737220-54737239 | Msa0212570:intron | 25.0% |
| ! | TTTCTTTCTGATGACTATTA+TGG | - | chr2_1:54737407-54737426 | Msa0212570:intron | 25.0% |
| ! | TAACAAGTGATTAAGATGTT+TGG | + | chr2_1:54737471-54737490 | None:intergenic | 25.0% |
| ! | GAGAAATTGAAAGGTTATAT+TGG | + | chr2_1:54737541-54737560 | None:intergenic | 25.0% |
| ! | TAACCTTTCAATTTCTCAAT+AGG | - | chr2_1:54737544-54737563 | Msa0212570:intron | 25.0% |
| !! | ATGCTATTTATAGAGATCAT+TGG | + | chr2_1:54737685-54737704 | None:intergenic | 25.0% |
| !! | TACTATTTCTTATCTCTACT+AGG | - | chr2_1:54737792-54737811 | Msa0212570:CDS | 25.0% |
| !! | ACTATTTCTTATCTCTACTA+GGG | - | chr2_1:54737793-54737812 | Msa0212570:CDS | 25.0% |
| !!! | TTACTTTTTTGATTCACAGT+TGG | - | chr2_1:54737904-54737923 | Msa0212570:intron | 25.0% |
| ! | AAAACAAAAATAGGAACTGA+TGG | - | chr2_1:54737943-54737962 | Msa0212570:intron | 25.0% |
| ! | CAAAAGTAGGAATTGATAGT+TGG | - | chr2_1:54736883-54736902 | Msa0212570:CDS | 30.0% |
| !!! | AGTGTTTTTTGATTTGCAGT+TGG | - | chr2_1:54737071-54737090 | Msa0212570:intron | 30.0% |
| ! | GGTTTTTGACAATAGTATGT+AGG | - | chr2_1:54737241-54737260 | Msa0212570:intron | 30.0% |
| ACACCTATTGAGAAATTGAA+AGG | + | chr2_1:54737550-54737569 | None:intergenic | 30.0% | |
| AACACAATGACTTTGATCTT+TGG | + | chr2_1:54737831-54737850 | None:intergenic | 30.0% | |
| GAAGATGGACAAAAGAATAA+TGG | - | chr2_1:54737994-54738013 | Msa0212570:CDS | 30.0% | |
| ! | ATAAACAAAGAAAGTGCACA+TGG | - | chr2_1:54738147-54738166 | Msa0212570:intron | 30.0% |
| ! | CAAAAGTAGGAATTGATAGT+TGG | - | chr2_1:54736883-54736902 | Msa0212570:CDS | 30.0% |
| !!! | AGTGTTTTTTGATTTGCAGT+TGG | - | chr2_1:54737071-54737090 | Msa0212570:intron | 30.0% |
| ! | GGTTTTTGACAATAGTATGT+AGG | - | chr2_1:54737241-54737260 | Msa0212570:intron | 30.0% |
| ACACCTATTGAGAAATTGAA+AGG | + | chr2_1:54737550-54737569 | None:intergenic | 30.0% | |
| AACACAATGACTTTGATCTT+TGG | + | chr2_1:54737831-54737850 | None:intergenic | 30.0% | |
| GAAGATGGACAAAAGAATAA+TGG | - | chr2_1:54737994-54738013 | Msa0212570:CDS | 30.0% | |
| ! | ATAAACAAAGAAAGTGCACA+TGG | - | chr2_1:54738147-54738166 | Msa0212570:intron | 30.0% |
| TACTACTTCTTATCTCTACC+AGG | - | chr2_1:54736722-54736741 | Msa0212570:CDS | 35.0% | |
| ACTACTTCTTATCTCTACCA+GGG | - | chr2_1:54736723-54736742 | Msa0212570:CDS | 35.0% | |
| ! | AATTGATAGTTGGCGAGATT+GGG | - | chr2_1:54736893-54736912 | Msa0212570:CDS | 35.0% |
| GAAGATGGACAAGAGAATAA+TGG | - | chr2_1:54736930-54736949 | Msa0212570:CDS | 35.0% | |
| AAAGAAGGTGGAGAAAGTAA+AGG | - | chr2_1:54736963-54736982 | Msa0212570:CDS | 35.0% | |
| ! | ACTTGTTAGTTGTTGTTGTG+TGG | - | chr2_1:54737483-54737502 | Msa0212570:intron | 35.0% |
| CTTACCTTGTTCGATAAACA+TGG | - | chr2_1:54737514-54737533 | Msa0212570:intron | 35.0% | |
| ! | TGGCTGATTCTGAGAATTAT+AGG | + | chr2_1:54737581-54737600 | None:intergenic | 35.0% |
| ! | GAAAGCACATGAAGAAAAAC+TGG | + | chr2_1:54737766-54737785 | None:intergenic | 35.0% |
| CAAAAATAGGAACTGATGGT+TGG | - | chr2_1:54737947-54737966 | Msa0212570:intron | 35.0% | |
| GATGGACAAAAGAATAATGG+TGG | - | chr2_1:54737997-54738016 | Msa0212570:CDS | 35.0% | |
| ! | GGTAAAGGTGCAAAAGAAAA+AGG | - | chr2_1:54738042-54738061 | Msa0212570:CDS | 35.0% |
| AACCTTCTGTTACACTTTCA+TGG | + | chr2_1:54738074-54738093 | None:intergenic | 35.0% | |
| ! | ATGAAAGTGTAACAGAAGGT+TGG | - | chr2_1:54738073-54738092 | Msa0212570:intron | 35.0% |
| ! | AAAGAAAGTGCACATGGAAA+AGG | - | chr2_1:54738153-54738172 | Msa0212570:intron | 35.0% |
| TACTACTTCTTATCTCTACC+AGG | - | chr2_1:54736722-54736741 | Msa0212570:CDS | 35.0% | |
| ACTACTTCTTATCTCTACCA+GGG | - | chr2_1:54736723-54736742 | Msa0212570:CDS | 35.0% | |
| ! | AATTGATAGTTGGCGAGATT+GGG | - | chr2_1:54736893-54736912 | Msa0212570:CDS | 35.0% |
| GAAGATGGACAAGAGAATAA+TGG | - | chr2_1:54736930-54736949 | Msa0212570:CDS | 35.0% | |
| AAAGAAGGTGGAGAAAGTAA+AGG | - | chr2_1:54736963-54736982 | Msa0212570:CDS | 35.0% | |
| ! | ACTTGTTAGTTGTTGTTGTG+TGG | - | chr2_1:54737483-54737502 | Msa0212570:intron | 35.0% |
| CTTACCTTGTTCGATAAACA+TGG | - | chr2_1:54737514-54737533 | Msa0212570:intron | 35.0% | |
| ! | TGGCTGATTCTGAGAATTAT+AGG | + | chr2_1:54737581-54737600 | None:intergenic | 35.0% |
| ! | GAAAGCACATGAAGAAAAAC+TGG | + | chr2_1:54737766-54737785 | None:intergenic | 35.0% |
| CAAAAATAGGAACTGATGGT+TGG | - | chr2_1:54737947-54737966 | Msa0212570:intron | 35.0% | |
| GATGGACAAAAGAATAATGG+TGG | - | chr2_1:54737997-54738016 | Msa0212570:CDS | 35.0% | |
| ! | GGTAAAGGTGCAAAAGAAAA+AGG | - | chr2_1:54738042-54738061 | Msa0212570:CDS | 35.0% |
| AACCTTCTGTTACACTTTCA+TGG | + | chr2_1:54738074-54738093 | None:intergenic | 35.0% | |
| ! | ATGAAAGTGTAACAGAAGGT+TGG | - | chr2_1:54738073-54738092 | Msa0212570:intron | 35.0% |
| ! | AAAGAAAGTGCACATGGAAA+AGG | - | chr2_1:54738153-54738172 | Msa0212570:intron | 35.0% |
| ! | GAATTGATAGTTGGCGAGAT+TGG | - | chr2_1:54736892-54736911 | Msa0212570:CDS | 40.0% |
| ! | ATTGATAGTTGGCGAGATTG+GGG | - | chr2_1:54736894-54736913 | Msa0212570:CDS | 40.0% |
| GATGGACAAGAGAATAATGG+TGG | - | chr2_1:54736933-54736952 | Msa0212570:CDS | 40.0% | |
| ! | AATGGTGGAAGTGACAAAGA+AGG | - | chr2_1:54736948-54736967 | Msa0212570:CDS | 40.0% |
| ! | AATTGATAGTTGGCGAGACT+GGG | - | chr2_1:54737124-54737143 | Msa0212570:intron | 40.0% |
| GGATCTGGAGAAGAGAATAA+TGG | - | chr2_1:54737161-54737180 | Msa0212570:intron | 40.0% | |
| TCTGGAGAAGAGAATAATGG+TGG | - | chr2_1:54737164-54737183 | Msa0212570:intron | 40.0% | |
| GGACAAAAGAATAATGGTGG+AGG | - | chr2_1:54738000-54738019 | Msa0212570:CDS | 40.0% | |
| ! | GTCCATGAAAGTGTAACAGA+AGG | - | chr2_1:54738069-54738088 | Msa0212570:intron | 40.0% |
| GACGATGAGAAAGAGAATGT+TGG | - | chr2_1:54738120-54738139 | Msa0212570:intron | 40.0% | |
| GATGAGAAAGAGAATGTTGG+TGG | - | chr2_1:54738123-54738142 | Msa0212570:intron | 40.0% | |
| AAAGGTGAAGACAACGAAAG+TGG | - | chr2_1:54738171-54738190 | Msa0212570:CDS | 40.0% | |
| AGTGGAAGAGACAACATAGA+TGG | - | chr2_1:54738189-54738208 | Msa0212570:CDS | 40.0% | |
| GACAACATAGATGGATACAG+TGG | - | chr2_1:54738198-54738217 | Msa0212570:CDS | 40.0% | |
| ATAGATGGATACAGTGGTAG+AGG | - | chr2_1:54738204-54738223 | Msa0212570:CDS | 40.0% | |
| ! | GAATTGATAGTTGGCGAGAT+TGG | - | chr2_1:54736892-54736911 | Msa0212570:CDS | 40.0% |
| ! | ATTGATAGTTGGCGAGATTG+GGG | - | chr2_1:54736894-54736913 | Msa0212570:CDS | 40.0% |
| GATGGACAAGAGAATAATGG+TGG | - | chr2_1:54736933-54736952 | Msa0212570:CDS | 40.0% | |
| ! | AATGGTGGAAGTGACAAAGA+AGG | - | chr2_1:54736948-54736967 | Msa0212570:CDS | 40.0% |
| ! | AATTGATAGTTGGCGAGACT+GGG | - | chr2_1:54737124-54737143 | Msa0212570:intron | 40.0% |
| GGATCTGGAGAAGAGAATAA+TGG | - | chr2_1:54737161-54737180 | Msa0212570:intron | 40.0% | |
| TCTGGAGAAGAGAATAATGG+TGG | - | chr2_1:54737164-54737183 | Msa0212570:intron | 40.0% | |
| GGACAAAAGAATAATGGTGG+AGG | - | chr2_1:54738000-54738019 | Msa0212570:CDS | 40.0% | |
| ! | GTCCATGAAAGTGTAACAGA+AGG | - | chr2_1:54738069-54738088 | Msa0212570:intron | 40.0% |
| GACGATGAGAAAGAGAATGT+TGG | - | chr2_1:54738120-54738139 | Msa0212570:intron | 40.0% | |
| GATGAGAAAGAGAATGTTGG+TGG | - | chr2_1:54738123-54738142 | Msa0212570:intron | 40.0% | |
| AAAGGTGAAGACAACGAAAG+TGG | - | chr2_1:54738171-54738190 | Msa0212570:CDS | 40.0% | |
| AGTGGAAGAGACAACATAGA+TGG | - | chr2_1:54738189-54738208 | Msa0212570:CDS | 40.0% | |
| GACAACATAGATGGATACAG+TGG | - | chr2_1:54738198-54738217 | Msa0212570:CDS | 40.0% | |
| ATAGATGGATACAGTGGTAG+AGG | - | chr2_1:54738204-54738223 | Msa0212570:CDS | 40.0% | |
| ATTGGATGTCTGAATTGCCC+TGG | + | chr2_1:54736743-54736762 | None:intergenic | 45.0% | |
| ! | GAATTGATAGTTGGCGAGAC+TGG | - | chr2_1:54737123-54737142 | Msa0212570:intron | 45.0% |
| ! | ATTGATAGTTGGCGAGACTG+GGG | - | chr2_1:54737125-54737144 | Msa0212570:intron | 45.0% |
| GGAGAAGAGAATAATGGTGG+AGG | - | chr2_1:54737167-54737186 | Msa0212570:intron | 45.0% | |
| ! | AGAGAATAATGGTGGAGGTG+AGG | - | chr2_1:54737172-54737191 | Msa0212570:intron | 45.0% |
| TGGGCCATGTTTATCGAACA+AGG | + | chr2_1:54737521-54737540 | None:intergenic | 45.0% | |
| AACTGATGGTTGGCGTGATT+GGG | - | chr2_1:54737957-54737976 | Msa0212570:intron | 45.0% | |
| ACAGAAGGTGGACAAGGTAA+AGG | - | chr2_1:54738027-54738046 | Msa0212570:CDS | 45.0% | |
| TAACAGAAGGTTGGAGAGAC+TGG | - | chr2_1:54738082-54738101 | Msa0212570:intron | 45.0% | |
| AACAGAAGGTTGGAGAGACT+GGG | - | chr2_1:54738083-54738102 | Msa0212570:intron | 45.0% | |
| ATTGGATGTCTGAATTGCCC+TGG | + | chr2_1:54736743-54736762 | None:intergenic | 45.0% | |
| ! | GAATTGATAGTTGGCGAGAC+TGG | - | chr2_1:54737123-54737142 | Msa0212570:intron | 45.0% |
| ! | ATTGATAGTTGGCGAGACTG+GGG | - | chr2_1:54737125-54737144 | Msa0212570:intron | 45.0% |
| GGAGAAGAGAATAATGGTGG+AGG | - | chr2_1:54737167-54737186 | Msa0212570:intron | 45.0% | |
| ! | AGAGAATAATGGTGGAGGTG+AGG | - | chr2_1:54737172-54737191 | Msa0212570:intron | 45.0% |
| TGGGCCATGTTTATCGAACA+AGG | + | chr2_1:54737521-54737540 | None:intergenic | 45.0% | |
| AACTGATGGTTGGCGTGATT+GGG | - | chr2_1:54737957-54737976 | Msa0212570:intron | 45.0% | |
| ACAGAAGGTGGACAAGGTAA+AGG | - | chr2_1:54738027-54738046 | Msa0212570:CDS | 45.0% | |
| TAACAGAAGGTTGGAGAGAC+TGG | - | chr2_1:54738082-54738101 | Msa0212570:intron | 45.0% | |
| AACAGAAGGTTGGAGAGACT+GGG | - | chr2_1:54738083-54738102 | Msa0212570:intron | 45.0% | |
| !!! | CTTTTAATTAAATATAATAA+AGG | + | chr2_1:54737053-54737072 | None:intergenic | 5.0% |
| !!! | CTTTTAATTAAATATAATAA+AGG | + | chr2_1:54737053-54737072 | None:intergenic | 5.0% |
| AGATTGGGGAGGCTCATTCT+GGG | - | chr2_1:54736908-54736927 | Msa0212570:CDS | 50.0% | |
| GGTGGAAGTGACAAAGAAGG+TGG | - | chr2_1:54736951-54736970 | Msa0212570:CDS | 50.0% | |
| AGACTGGGGAGGATCATTCT+GGG | - | chr2_1:54737139-54737158 | Msa0212570:intron | 50.0% | |
| ! | AATGGTGGAGGTGAGGAAGA+AGG | - | chr2_1:54737179-54737198 | Msa0212570:intron | 50.0% |
| GAACTGATGGTTGGCGTGAT+TGG | - | chr2_1:54737956-54737975 | Msa0212570:intron | 50.0% | |
| ACTGATGGTTGGCGTGATTG+GGG | - | chr2_1:54737958-54737977 | Msa0212570:CDS | 50.0% | |
| TGATTGGGGAGGCTCATTCT+GGG | - | chr2_1:54737972-54737991 | Msa0212570:CDS | 50.0% | |
| ! | AATGGTGGAGGTGACACAGA+AGG | - | chr2_1:54738012-54738031 | Msa0212570:CDS | 50.0% |
| ACAGAAGGTTGGAGAGACTG+GGG | - | chr2_1:54738084-54738103 | Msa0212570:intron | 50.0% | |
| ! | AGACTGGGGAGGCTCATTTT+GGG | - | chr2_1:54738098-54738117 | Msa0212570:intron | 50.0% |
| AGATTGGGGAGGCTCATTCT+GGG | - | chr2_1:54736908-54736927 | Msa0212570:CDS | 50.0% | |
| GGTGGAAGTGACAAAGAAGG+TGG | - | chr2_1:54736951-54736970 | Msa0212570:CDS | 50.0% | |
| AGACTGGGGAGGATCATTCT+GGG | - | chr2_1:54737139-54737158 | Msa0212570:intron | 50.0% | |
| ! | AATGGTGGAGGTGAGGAAGA+AGG | - | chr2_1:54737179-54737198 | Msa0212570:intron | 50.0% |
| GAACTGATGGTTGGCGTGAT+TGG | - | chr2_1:54737956-54737975 | Msa0212570:intron | 50.0% | |
| ACTGATGGTTGGCGTGATTG+GGG | - | chr2_1:54737958-54737977 | Msa0212570:CDS | 50.0% | |
| TGATTGGGGAGGCTCATTCT+GGG | - | chr2_1:54737972-54737991 | Msa0212570:CDS | 50.0% | |
| ! | AATGGTGGAGGTGACACAGA+AGG | - | chr2_1:54738012-54738031 | Msa0212570:CDS | 50.0% |
| ACAGAAGGTTGGAGAGACTG+GGG | - | chr2_1:54738084-54738103 | Msa0212570:intron | 50.0% | |
| ! | AGACTGGGGAGGCTCATTTT+GGG | - | chr2_1:54738098-54738117 | Msa0212570:intron | 50.0% |
| GATAGTTGGCGAGATTGGGG+AGG | - | chr2_1:54736897-54736916 | Msa0212570:CDS | 55.0% | |
| GAGATTGGGGAGGCTCATTC+TGG | - | chr2_1:54736907-54736926 | Msa0212570:CDS | 55.0% | |
| ! | GGAGGCTCATTCTGGGAAGA+TGG | - | chr2_1:54736915-54736934 | Msa0212570:CDS | 55.0% |
| GAGACTGGGGAGGATCATTC+TGG | - | chr2_1:54737138-54737157 | Msa0212570:intron | 55.0% | |
| GACTGGGGAGGATCATTCTG+GGG | - | chr2_1:54737140-54737159 | Msa0212570:intron | 55.0% | |
| ! | GGAGGATCATTCTGGGGATC+TGG | - | chr2_1:54737146-54737165 | Msa0212570:intron | 55.0% |
| GGTGAGGAAGAAGGCGAACA+AGG | - | chr2_1:54737188-54737207 | Msa0212570:intron | 55.0% | |
| GTGATTGGGGAGGCTCATTC+TGG | - | chr2_1:54737971-54737990 | Msa0212570:CDS | 55.0% | |
| ! | GGAGGCTCATTCTGGGAAGA+TGG | - | chr2_1:54736915-54736934 | Msa0212570:CDS | 55.0% |
| GGTGACACAGAAGGTGGACA+AGG | - | chr2_1:54738021-54738040 | Msa0212570:CDS | 55.0% | |
| ! | GAGACTGGGGAGGCTCATTT+TGG | - | chr2_1:54738097-54738116 | Msa0212570:intron | 55.0% |
| GATAGTTGGCGAGATTGGGG+AGG | - | chr2_1:54736897-54736916 | Msa0212570:CDS | 55.0% | |
| GAGATTGGGGAGGCTCATTC+TGG | - | chr2_1:54736907-54736926 | Msa0212570:CDS | 55.0% | |
| ! | GGAGGCTCATTCTGGGAAGA+TGG | - | chr2_1:54736915-54736934 | Msa0212570:CDS | 55.0% |
| GAGACTGGGGAGGATCATTC+TGG | - | chr2_1:54737138-54737157 | Msa0212570:intron | 55.0% | |
| GACTGGGGAGGATCATTCTG+GGG | - | chr2_1:54737140-54737159 | Msa0212570:intron | 55.0% | |
| ! | GGAGGATCATTCTGGGGATC+TGG | - | chr2_1:54737146-54737165 | Msa0212570:intron | 55.0% |
| GGTGAGGAAGAAGGCGAACA+AGG | - | chr2_1:54737188-54737207 | Msa0212570:intron | 55.0% | |
| GTGATTGGGGAGGCTCATTC+TGG | - | chr2_1:54737971-54737990 | Msa0212570:CDS | 55.0% | |
| ! | GGAGGCTCATTCTGGGAAGA+TGG | - | chr2_1:54736915-54736934 | Msa0212570:CDS | 55.0% |
| GGTGACACAGAAGGTGGACA+AGG | - | chr2_1:54738021-54738040 | Msa0212570:CDS | 55.0% | |
| ! | GAGACTGGGGAGGCTCATTT+TGG | - | chr2_1:54738097-54738116 | Msa0212570:intron | 55.0% |
| GATAGTTGGCGAGACTGGGG+AGG | - | chr2_1:54737128-54737147 | Msa0212570:intron | 60.0% | |
| GATGGTTGGCGTGATTGGGG+AGG | - | chr2_1:54737961-54737980 | Msa0212570:CDS | 60.0% | |
| GGTGGAGGTGACACAGAAGG+TGG | - | chr2_1:54738015-54738034 | Msa0212570:CDS | 60.0% | |
| GAAGGTTGGAGAGACTGGGG+AGG | - | chr2_1:54738087-54738106 | Msa0212570:intron | 60.0% | |
| GATAGTTGGCGAGACTGGGG+AGG | - | chr2_1:54737128-54737147 | Msa0212570:intron | 60.0% | |
| GATGGTTGGCGTGATTGGGG+AGG | - | chr2_1:54737961-54737980 | Msa0212570:CDS | 60.0% | |
| GGTGGAGGTGACACAGAAGG+TGG | - | chr2_1:54738015-54738034 | Msa0212570:CDS | 60.0% | |
| GAAGGTTGGAGAGACTGGGG+AGG | - | chr2_1:54738087-54738106 | Msa0212570:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 54736706 | 54738236 | 54736706 | ID=Msa0212570;Name=Msa0212570 |
| chr2_1 | mRNA | 54736706 | 54738236 | 54736706 | ID=Msa0212570-mRNA-1;Parent=Msa0212570;Name=Msa0212570-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|0.66|0.75|4|0|209 |
| chr2_1 | exon | 54738167 | 54738236 | 54738167 | ID=Msa0212570-mRNA-1:exon:15178;Parent=Msa0212570-mRNA-1 |
| chr2_1 | exon | 54737958 | 54738083 | 54737958 | ID=Msa0212570-mRNA-1:exon:15177;Parent=Msa0212570-mRNA-1 |
| chr2_1 | exon | 54737733 | 54737852 | 54737733 | ID=Msa0212570-mRNA-1:exon:15176;Parent=Msa0212570-mRNA-1 |
| chr2_1 | exon | 54736706 | 54737019 | 54736706 | ID=Msa0212570-mRNA-1:exon:15175;Parent=Msa0212570-mRNA-1 |
| chr2_1 | CDS | 54738167 | 54738236 | 54738167 | ID=Msa0212570-mRNA-1:cds;Parent=Msa0212570-mRNA-1 |
| chr2_1 | CDS | 54737958 | 54738083 | 54737958 | ID=Msa0212570-mRNA-1:cds;Parent=Msa0212570-mRNA-1 |
| chr2_1 | CDS | 54737733 | 54737852 | 54737733 | ID=Msa0212570-mRNA-1:cds;Parent=Msa0212570-mRNA-1 |
| chr2_1 | CDS | 54736706 | 54737019 | 54736706 | ID=Msa0212570-mRNA-1:cds;Parent=Msa0212570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
