AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1402300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1402300 MtrunA17_Chr4g0013581 98.225 507 9 0 1 507 1 507 0.0 1021
Msa1402300 MtrunA17_Chr4g0013591 82.941 510 80 2 1 504 1 509 0.0 850
Msa1402300 MtrunA17_Chr8g0353161 70.120 502 146 2 6 504 8 508 0.0 722
Msa1402300 MtrunA17_Chr8g0353141 70.120 502 146 3 6 504 8 508 0.0 719
Msa1402300 MtrunA17_Chr5g0435421 67.123 511 161 2 1 504 1 511 0.0 678
Msa1402300 MtrunA17_Chr5g0437201 65.825 515 160 3 6 504 8 522 0.0 665
Msa1402300 MtrunA17_Chr8g0356471 44.747 514 267 6 10 507 9 521 3.91e-166 480
Msa1402300 MtrunA17_Chr2g0319001 31.323 514 327 8 7 501 17 523 9.43e-81 261
Msa1402300 MtrunA17_Chr4g0067801 47.032 219 112 2 154 371 1 216 6.36e-61 199
Msa1402300 MtrunA17_Chr4g0042131 29.167 384 259 6 132 507 43 421 1.62e-45 164
Msa1402300 MtrunA17_Chr2g0319011 29.904 311 194 6 205 496 3 308 2.59e-31 123
Msa1402300 MtrunA17_Chr2g0319021 34.862 109 71 0 25 133 32 140 4.50e-20 86.7
Msa1402300 MtrunA17_Chr4g0042121 32.283 127 79 3 7 129 21 144 2.79e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1402300 AT1G16390.1 48.795 498 244 6 15 503 14 509 1.78e-175 504
Msa1402300 AT1G79360.1 47.400 500 248 6 23 507 19 518 1.68e-171 494
Msa1402300 AT1G79410.1 42.970 505 276 8 7 505 9 507 1.10e-137 407
Msa1402300 AT1G16370.1 42.331 489 268 7 25 505 31 513 5.15e-137 406
Msa1402300 AT1G73220.1 35.465 516 317 6 2 507 23 532 7.72e-105 324
Msa1402300 AT3G20660.1 29.377 514 340 11 4 507 17 517 3.37e-71 236
Msa1402300 AT3G51490.3 28.902 173 115 3 127 292 3 174 1.50e-12 70.5
Msa1402300 AT3G51490.2 28.902 173 115 3 127 292 53 224 1.87e-12 70.5
Msa1402300 AT3G51490.1 28.902 173 115 3 127 292 53 224 2.01e-12 70.1
Msa1402300 AT1G34580.2 24.057 424 267 18 120 504 37 444 1.27e-11 67.0
Msa1402300 AT1G34580.1 24.057 424 267 18 120 504 87 494 2.01e-11 66.6
Msa1402300 AT1G20840.2 26.415 159 106 2 141 292 68 222 7.30e-11 65.5
Msa1402300 AT1G20840.1 26.415 159 106 2 141 292 68 222 7.30e-11 65.5

Find 109 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATTGGAATGGTTTATTT+TGG 0.180720 tig0022816:-80724 Msa1402300:CDS
CGTGGAAATCGGTGTATATT+TGG 0.206428 tig0022816:-81023 Msa1402300:CDS
ATGTGTACATGAAACATCTT+AGG 0.247780 tig0022816:-79934 Msa1402300:three_prime_UTR
GAATATTTCTGCTTCACATT+AGG 0.262371 tig0022816:-81090 Msa1402300:CDS
AATATTTCTGCTTCACATTA+GGG 0.272078 tig0022816:-81089 Msa1402300:CDS
GAAAGGGGTTTAGGAAGATT+TGG 0.291856 tig0022816:-81627 Msa1402300:CDS
CCTCCCAGCAGATATCAAAA+AGG 0.297351 tig0022816:+80351 None:intergenic
TTGTGTGGCTACTTATTTCT+TGG 0.297902 tig0022816:-80623 Msa1402300:CDS
GAAGCTATGGCAATGCTTAA+AGG 0.298486 tig0022816:-80910 Msa1402300:CDS
CAAGAATCGATGGCTTTCTT+TGG 0.301329 tig0022816:+80593 None:intergenic
ATGGTTCTTGGTATTGGAAT+TGG 0.308137 tig0022816:-80739 Msa1402300:CDS
GCAAAATTCCTAAGTCTTCA+TGG 0.320997 tig0022816:-81461 Msa1402300:CDS
CCGCAATCTTCGTTCTTCAT+TGG 0.331379 tig0022816:-81360 Msa1402300:CDS
CGTCAATTGCAGAGTTGTTC+GGG 0.343455 tig0022816:-80795 Msa1402300:CDS
GAAATGATGGAAAGGGGTTT+AGG 0.347800 tig0022816:-81636 Msa1402300:CDS
GCCATCGATTCTTGTATTCT+CGG 0.352206 tig0022816:-80584 Msa1402300:CDS
TGTTACATTACTCGGTTTGC+CGG 0.361066 tig0022816:-80275 Msa1402300:CDS
CCTTTAGCCGTTGGAAACTT+AGG 0.365016 tig0022816:-80697 Msa1402300:CDS
TGTGCTAGTAGCTTTGTAAC+AGG 0.368806 tig0022816:-81387 Msa1402300:CDS
TTCTTAGGTCATAAGCTTCA+TGG 0.370163 tig0022816:+79910 None:intergenic
TGTATAATGTGTGTTATTGT+TGG 0.371116 tig0022816:-80544 Msa1402300:CDS
GCGGTAATGGTTCTTGGTAT+TGG 0.379219 tig0022816:-80745 Msa1402300:CDS
TCGTCAATTGCAGAGTTGTT+CGG 0.383274 tig0022816:-80796 Msa1402300:CDS
TTCTCTCATGGCGGCTATAG+AGG 0.389503 tig0022816:-82440 Msa1402300:exon
TCCATCATTTCATCTGTTGA+AGG 0.402045 tig0022816:+81648 None:intergenic
CAGAGTTGTTCGGGAGAAGT+TGG 0.405119 tig0022816:-80786 Msa1402300:CDS
TAGATATAATTCGTGGAAAT+CGG 0.408726 tig0022816:-81034 Msa1402300:CDS
GATTCGTACAATGCCATGTT+TGG 0.423157 tig0022816:+81514 None:intergenic
ATGATTGAGTAAATAATTGC+AGG 0.429182 tig0022816:+80991 None:intergenic
TTTCTTCTCTTGTTGATCCA+TGG 0.431898 tig0022816:+80225 None:intergenic
ATATACCTCAGAAGAAGCTT+GGG 0.435637 tig0022816:+82399 None:intergenic
AAAGCGAATGGTGGCGGTAA+TGG 0.437000 tig0022816:-80758 Msa1402300:CDS
ATGACATGTCAGTTTAAAAT+CGG 0.439222 tig0022816:-80201 Msa1402300:exon
CCGAGTGGAGGTTCACTGTT+GGG 0.441877 tig0022816:-81119 Msa1402300:CDS
ATGGTGGCGGTAATGGTTCT+TGG 0.443762 tig0022816:-80751 Msa1402300:CDS
AACAGATGAAATGATGGAAA+GGG 0.447149 tig0022816:-81643 Msa1402300:CDS
GTCACGTTTGGTTTATGTAA+AGG 0.450575 tig0022816:+82532 None:intergenic
ATCGGGACAACAAGGAATTA+AGG 0.453209 tig0022816:-80521 Msa1402300:CDS
TTCCTAAGTCTTCATGGTCA+TGG 0.455731 tig0022816:-81455 Msa1402300:CDS
TTTGGAATGCCTTTAGCCGT+TGG 0.456255 tig0022816:-80706 Msa1402300:CDS
AGAGTTGTTCGGGAGAAGTT+GGG 0.457783 tig0022816:-80785 Msa1402300:CDS
TATATACCTCAGAAGAAGCT+TGG 0.458289 tig0022816:+82398 None:intergenic
TTGTCTTGTGTTACATTACT+CGG 0.467042 tig0022816:-80283 Msa1402300:CDS
TGTTGTGTTCAACGGTTTGA+TGG 0.467189 tig0022816:-80656 Msa1402300:CDS
TGTTACTTATCAGTTAATAG+TGG 0.470031 tig0022816:+79991 None:intergenic
TATTTGGCTGTTGTGTTCAA+CGG 0.483478 tig0022816:-80664 Msa1402300:CDS
GAAGCTTGGGGTATGGAAGA+AGG 0.491661 tig0022816:+82412 None:intergenic
ATCTTAATAGATATAATTCG+TGG 0.492171 tig0022816:-81041 Msa1402300:CDS
CTTGCATTAGAAGCCATCTC+GGG 0.492815 tig0022816:+80944 None:intergenic
CTCAGAAGAAGCTTGGGGTA+TGG 0.496504 tig0022816:+82405 None:intergenic
CTGCAATTGACGAGTAAAGC+TGG 0.497090 tig0022816:+80806 None:intergenic
TAGAAGCCATCTCGGGGACT+CGG 0.499415 tig0022816:+80951 None:intergenic
CCTTGCATTAGAAGCCATCT+CGG 0.501206 tig0022816:+80943 None:intergenic
CCTAAGTTTCCAACGGCTAA+AGG 0.502513 tig0022816:+80697 None:intergenic
GTAGTGTTTCTCACACTTGT+TGG 0.504323 tig0022816:+80421 None:intergenic
ATGTGTGTTATTGTTGGATC+GGG 0.504656 tig0022816:-80538 Msa1402300:CDS
GAGAAACACTACAACATCAT+TGG 0.509406 tig0022816:-80410 Msa1402300:CDS
TCCTTCAACAGATGAAATGA+TGG 0.510742 tig0022816:-81649 Msa1402300:CDS
TTAGGGTATGTGTCATTGCC+TGG 0.518083 tig0022816:-81072 Msa1402300:CDS
GGCTCTAAAGCGAATGGTGG+CGG 0.520323 tig0022816:-80764 Msa1402300:CDS
TCTTGGTATTGGAATTGGAA+TGG 0.520997 tig0022816:-80734 Msa1402300:CDS
TAAAAGCAAGTTTACCATTG+TGG 0.525109 tig0022816:+80022 None:intergenic
TCCTAAGTCTTCATGGTCAT+GGG 0.525136 tig0022816:-81454 Msa1402300:CDS
GAATTGTTACCTTCAAAAGA+AGG 0.526708 tig0022816:+80044 None:intergenic
GGGTTTAGGAAGATTTGGTT+GGG 0.532129 tig0022816:-81622 Msa1402300:CDS
GGGGTTTAGGAAGATTTGGT+TGG 0.533651 tig0022816:-81623 Msa1402300:CDS
CTAGAAGAAACGAACCGAAA+AGG 0.540466 tig0022816:+81334 None:intergenic
AGCCCCGGTGAATAAACAAA+AGG 0.542980 tig0022816:-80839 Msa1402300:CDS
AATGTGTGTTATTGTTGGAT+CGG 0.549320 tig0022816:-80539 Msa1402300:CDS
CTTGTATTCTCGGTAGCTAG+TGG 0.549620 tig0022816:-80574 Msa1402300:CDS
CAACAGATGAAATGATGGAA+AGG 0.550084 tig0022816:-81644 Msa1402300:CDS
ACAAAACAGTGATATCTCAA+TGG 0.553373 tig0022816:-81419 Msa1402300:CDS
ATGCCATGTTTGGTATTCGT+CGG 0.558939 tig0022816:+81524 None:intergenic
GACAACAAGGAATTAAGGTC+GGG 0.563112 tig0022816:-80516 Msa1402300:CDS
CTATTAAGATAAGCTATACC+AGG 0.565268 tig0022816:+81054 None:intergenic
ATTAGCTCTTTCAGATACCA+TGG 0.565402 tig0022816:-80242 Msa1402300:CDS
CTCGGTTTGCCGGAGTCAAG+AGG 0.567370 tig0022816:-80265 Msa1402300:CDS
TCCCATGACCATGAAGACTT+AGG 0.573627 tig0022816:+81453 None:intergenic
AGGACGACATCAAGAAGCTA+TGG 0.579332 tig0022816:-80923 Msa1402300:CDS
AAGTCTTCATGGTCATGGGA+TGG 0.580758 tig0022816:-81450 Msa1402300:CDS
ACTTTAGCTGATACATCACT+TGG 0.581500 tig0022816:-81309 Msa1402300:CDS
AGTAAGTTTAATAGAAGCCC+CGG 0.581651 tig0022816:-80854 Msa1402300:CDS
ACCGAGTGGAGGTTCACTGT+TGG 0.582904 tig0022816:-81120 Msa1402300:CDS
AACAGAATAAATCCAAACAT+TGG 0.591278 tig0022816:+81218 None:intergenic
GAATCTGATGCACATGTGGT+CGG 0.594235 tig0022816:+81492 None:intergenic
ACAGATGAAATGATGGAAAG+GGG 0.595316 tig0022816:-81642 Msa1402300:CDS
ATCGGTGTATATTTGGACAT+CGG 0.596172 tig0022816:-81016 Msa1402300:CDS
TTGTTACCGAGTCCCCGAGA+TGG 0.599721 tig0022816:-80957 Msa1402300:CDS
ACCGAGAATACAAGAATCGA+TGG 0.601771 tig0022816:+80583 None:intergenic
GGACAACAAGGAATTAAGGT+CGG 0.602421 tig0022816:-80517 Msa1402300:CDS
AGAGCTAATCCTCTTGACTC+CGG 0.602963 tig0022816:+80256 None:intergenic
CATACCCCAAGCTTCTTCTG+AGG 0.603884 tig0022816:-82404 Msa1402300:intron
GATGGAAATACCGTCTTGTG+TGG 0.605544 tig0022816:-80638 Msa1402300:CDS
TGTGTACATGAAACATCTTA+GGG 0.615397 tig0022816:-79933 Msa1402300:three_prime_UTR
GTCAAAACCTAAGTTTCCAA+CGG 0.615468 tig0022816:+80690 None:intergenic
ATTGTTGGATCGGGACAACA+AGG 0.619158 tig0022816:-80529 Msa1402300:CDS
CCGAGATGGCTTCTAATGCA+AGG 0.623082 tig0022816:-80943 Msa1402300:CDS
AAATAAGTAGCCACACAAGA+CGG 0.630270 tig0022816:+80628 None:intergenic
TGAAGGTAACAATTCCACAA+TGG 0.632979 tig0022816:-80036 Msa1402300:three_prime_UTR
AAGTTGGGCTCTAAAGCGAA+TGG 0.635588 tig0022816:-80770 Msa1402300:CDS
ACACCGACGAATACCAAACA+TGG 0.647674 tig0022816:-81527 Msa1402300:CDS
CCCAACAGTGAACCTCCACT+CGG 0.649161 tig0022816:+81119 None:intergenic
TTGCATTAGAAGCCATCTCG+GGG 0.669568 tig0022816:+80945 None:intergenic
CTGAGAAAGTTAGTACCGAG+TGG 0.671581 tig0022816:-81134 Msa1402300:CDS
TTGGGCTCTAAAGCGAATGG+TGG 0.677343 tig0022816:-80767 Msa1402300:CDS
GTTAGAATCTGATGCACATG+TGG 0.681692 tig0022816:+81488 None:intergenic
TATACCTCAGAAGAAGCTTG+GGG 0.696128 tig0022816:+82400 None:intergenic
AGAAAGTTAGTACCGAGTGG+AGG 0.706492 tig0022816:-81131 Msa1402300:CDS
CCAATGAAGAACGAAGATTG+CGG 0.713248 tig0022816:+81360 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAGATTAAATATAAATAAAT+AGG + tig0022816:80586-80605 None:intergenic 10.0%
!! AGCAATATTTATTGAAAAAA+TGG + tig0022816:79943-79962 None:intergenic 15.0%
!!! GGTTTGTTTATATATAATTA+GGG + tig0022816:80248-80267 None:intergenic 15.0%
!!! TGGTTTGTTTATATATAATT+AGG + tig0022816:80249-80268 None:intergenic 15.0%
!!! CCAGTTTTATATAATTATTT+TGG + tig0022816:80494-80513 None:intergenic 15.0%
!! CCAAAATAATTATATAAAAC+TGG - tig0022816:80491-80510 Msa1402300:CDS 15.0%
!!! ATTTTAATAGCAATTAGAAA+TGG - tig0022816:80712-80731 Msa1402300:CDS 15.0%
!! TCACTACTATCAAAATTATT+TGG - tig0022816:80148-80167 Msa1402300:three_prime_UTR 20.0%
!! TAATTAAGATGATAAAGTGA+CGG + tig0022816:80224-80243 None:intergenic 20.0%
!! AAAACTAAAAAATTCAATCC+TGG + tig0022816:80549-80568 None:intergenic 20.0%
!! TGCTTTCAATTGAATAATAA+AGG + tig0022816:80652-80671 None:intergenic 20.0%
!! GAATTAGAATTAGTTGAAAT+TGG + tig0022816:80755-80774 None:intergenic 20.0%
!!! TCTGTTTTTAAATTCTTGAT+TGG - tig0022816:81244-81263 Msa1402300:CDS 20.0%
!! ATCTTAATAGATATAATTCG+TGG - tig0022816:81404-81423 Msa1402300:CDS 20.0%
!!! AAAAATGACATTTTCTCATA+CGG - tig0022816:82117-82136 Msa1402300:intron 20.0%
! TATAAACAAACCAAAAGTCT+TGG - tig0022816:80256-80275 Msa1402300:CDS 25.0%
! ATCAAAGTCAAACAAAAACT+TGG + tig0022816:80387-80406 None:intergenic 25.0%
! CAATTGAATAATAAAGGCAA+AGG + tig0022816:80646-80665 None:intergenic 25.0%
! AATAGTAATAGCAATAGCAT+AGG - tig0022816:80677-80696 Msa1402300:CDS 25.0%
! TAATTCTAATTCTATTGAGC+AGG - tig0022816:80763-80782 Msa1402300:CDS 25.0%
! AACAGAATAAATCCAAACAT+TGG + tig0022816:81230-81249 None:intergenic 25.0%
!! AATATTTCTGCTTCACATTA+GGG - tig0022816:81356-81375 Msa1402300:CDS 25.0%
! TAGATATAATTCGTGGAAAT+CGG - tig0022816:81411-81430 Msa1402300:CDS 25.0%
! ATGATTGAGTAAATAATTGC+AGG + tig0022816:81457-81476 None:intergenic 25.0%
!!! CTTAGGTTTTGACATTTATT+TGG - tig0022816:81765-81784 Msa1402300:intron 25.0%
!! TGTATAATGTGTGTTATTGT+TGG - tig0022816:81901-81920 Msa1402300:intron 25.0%
!! ATGACATGTCAGTTTAAAAT+CGG - tig0022816:82244-82263 Msa1402300:intron 25.0%
!! TGTTACTTATCAGTTAATAG+TGG + tig0022816:82457-82476 None:intergenic 25.0%
!!! TCTCATCTTTTTTTCTCTCA+TGG - tig0022816:79993-80012 Msa1402300:three_prime_UTR 30.0%
ATAGCAATTAGAAATGGCAT+TGG - tig0022816:80718-80737 Msa1402300:CDS 30.0%
! AACAGATGAAATGATGGAAA+GGG - tig0022816:80802-80821 Msa1402300:CDS 30.0%
ACAAAACAGTGATATCTCAA+TGG - tig0022816:81026-81045 Msa1402300:CDS 30.0%
! TTGTTTTCTCTACCAATGTT+TGG - tig0022816:81215-81234 Msa1402300:CDS 30.0%
! GAATATTTCTGCTTCACATT+AGG - tig0022816:81355-81374 Msa1402300:CDS 30.0%
CTATTAAGATAAGCTATACC+AGG + tig0022816:81394-81413 None:intergenic 30.0%
! GGAATTGGAATGGTTTATTT+TGG - tig0022816:81721-81740 Msa1402300:intron 30.0%
! AATGTGTGTTATTGTTGGAT+CGG - tig0022816:81906-81925 Msa1402300:intron 30.0%
TTGTCTTGTGTTACATTACT+CGG - tig0022816:82162-82181 Msa1402300:intron 30.0%
!!! TCACGTTTTTTTTTGTTGCT+TGG - tig0022816:82294-82313 Msa1402300:intron 30.0%
!!! GTTTTTTTTTGTTGCTTGGT+AGG - tig0022816:82298-82317 Msa1402300:intron 30.0%
GAATTGTTACCTTCAAAAGA+AGG + tig0022816:82404-82423 None:intergenic 30.0%
TAAAAGCAAGTTTACCATTG+TGG + tig0022816:82426-82445 None:intergenic 30.0%
ATGTGTACATGAAACATCTT+AGG - tig0022816:82511-82530 Msa1402300:five_prime_UTR 30.0%
TGTGTACATGAAACATCTTA+GGG - tig0022816:82512-82531 Msa1402300:five_prime_UTR 30.0%
! GTCACGTTTGGTTTATGTAA+AGG + tig0022816:79916-79935 None:intergenic 35.0%
AAAAATGGATGTGTCACGTT+TGG + tig0022816:79928-79947 None:intergenic 35.0%
!!! CATCTTTTTTTCTCTCATGG+CGG - tig0022816:79996-80015 Msa1402300:three_prime_UTR 35.0%
ATATACCTCAGAAGAAGCTT+GGG + tig0022816:80049-80068 None:intergenic 35.0%
TATATACCTCAGAAGAAGCT+TGG + tig0022816:80050-80069 None:intergenic 35.0%
TCCTTCAACAGATGAAATGA+TGG - tig0022816:80796-80815 Msa1402300:CDS 35.0%
TCCATCATTTCATCTGTTGA+AGG + tig0022816:80800-80819 None:intergenic 35.0%
! CAACAGATGAAATGATGGAA+AGG - tig0022816:80801-80820 Msa1402300:CDS 35.0%
! ACAGATGAAATGATGGAAAG+GGG - tig0022816:80803-80822 Msa1402300:CDS 35.0%
GCAAAATTCCTAAGTCTTCA+TGG - tig0022816:80984-81003 Msa1402300:CDS 35.0%
!! TTCTTCATTGGTTGCCTTTT+CGG - tig0022816:81097-81116 Msa1402300:CDS 35.0%
ACTTTAGCTGATACATCACT+TGG - tig0022816:81136-81155 Msa1402300:CDS 35.0%
ATCGGTGTATATTTGGACAT+CGG - tig0022816:81429-81448 Msa1402300:CDS 35.0%
AGTAAGTTTAATAGAAGCCC+CGG - tig0022816:81591-81610 Msa1402300:CDS 35.0%
!! AAGCCTTTTGTTTATTCACC+GGG + tig0022816:81612-81631 None:intergenic 35.0%
!! GAAGCCTTTTGTTTATTCAC+CGG + tig0022816:81613-81632 None:intergenic 35.0%
! ATGGTTCTTGGTATTGGAAT+TGG - tig0022816:81706-81725 Msa1402300:intron 35.0%
! TCTTGGTATTGGAATTGGAA+TGG - tig0022816:81711-81730 Msa1402300:intron 35.0%
GTCAAAACCTAAGTTTCCAA+CGG + tig0022816:81758-81777 None:intergenic 35.0%
TATTTGGCTGTTGTGTTCAA+CGG - tig0022816:81781-81800 Msa1402300:intron 35.0%
AAATAAGTAGCCACACAAGA+CGG + tig0022816:81820-81839 None:intergenic 35.0%
! TTGTGTGGCTACTTATTTCT+TGG - tig0022816:81822-81841 Msa1402300:intron 35.0%
! ATGTGTGTTATTGTTGGATC+GGG - tig0022816:81907-81926 Msa1402300:intron 35.0%
GAGAAACACTACAACATCAT+TGG - tig0022816:82035-82054 Msa1402300:intron 35.0%
! GTGAGACAAGCTATTGTTTT+TGG - tig0022816:82057-82076 Msa1402300:intron 35.0%
! ATTAGCTCTTTCAGATACCA+TGG - tig0022816:82203-82222 Msa1402300:intron 35.0%
TTTCTTCTCTTGTTGATCCA+TGG + tig0022816:82223-82242 None:intergenic 35.0%
! TGAGTTTCACCTTCTTTTGA+AGG - tig0022816:82392-82411 Msa1402300:intron 35.0%
TGAAGGTAACAATTCCACAA+TGG - tig0022816:82409-82428 Msa1402300:CDS 35.0%
TATACCTCAGAAGAAGCTTG+GGG + tig0022816:80048-80067 None:intergenic 40.0%
! ATGCAACTAGCCAAGACTTT+TGG + tig0022816:80269-80288 None:intergenic 40.0%
AATAACAACGTGCACAAGCA+TGG + tig0022816:80453-80472 None:intergenic 40.0%
TTCAATCCTGGCAACTACTA+TGG + tig0022816:80537-80556 None:intergenic 40.0%
! GAAATGATGGAAAGGGGTTT+AGG - tig0022816:80809-80828 Msa1402300:CDS 40.0%
GAAAGGGGTTTAGGAAGATT+TGG - tig0022816:80818-80837 Msa1402300:CDS 40.0%
! GGGTTTAGGAAGATTTGGTT+GGG - tig0022816:80823-80842 Msa1402300:CDS 40.0%
ATGCCATGTTTGGTATTCGT+CGG + tig0022816:80924-80943 None:intergenic 40.0%
GATTCGTACAATGCCATGTT+TGG + tig0022816:80934-80953 None:intergenic 40.0%
GTTAGAATCTGATGCACATG+TGG + tig0022816:80960-80979 None:intergenic 40.0%
TTCCTAAGTCTTCATGGTCA+TGG - tig0022816:80990-81009 Msa1402300:CDS 40.0%
TCCTAAGTCTTCATGGTCAT+GGG - tig0022816:80991-81010 Msa1402300:CDS 40.0%
! GATATCACTGTTTTGTGTGC+TGG + tig0022816:81022-81041 None:intergenic 40.0%
!! TGTGCTAGTAGCTTTGTAAC+AGG - tig0022816:81058-81077 Msa1402300:CDS 40.0%
CCAATGAAGAACGAAGATTG+CGG + tig0022816:81088-81107 None:intergenic 40.0%
CTAGAAGAAACGAACCGAAA+AGG + tig0022816:81114-81133 None:intergenic 40.0%
CGTGGAAATCGGTGTATATT+TGG - tig0022816:81422-81441 Msa1402300:CDS 40.0%
GAAGCTATGGCAATGCTTAA+AGG - tig0022816:81535-81554 Msa1402300:CDS 40.0%
!! AGCCTTTTGTTTATTCACCG+GGG + tig0022816:81611-81630 None:intergenic 40.0%
TCGTCAATTGCAGAGTTGTT+CGG - tig0022816:81649-81668 Msa1402300:CDS 40.0%
TGTTGTGTTCAACGGTTTGA+TGG - tig0022816:81789-81808 Msa1402300:intron 40.0%
CAAGAATCGATGGCTTTCTT+TGG + tig0022816:81855-81874 None:intergenic 40.0%
!! GCCATCGATTCTTGTATTCT+CGG - tig0022816:81861-81880 Msa1402300:intron 40.0%
ACCGAGAATACAAGAATCGA+TGG + tig0022816:81865-81884 None:intergenic 40.0%
ATCGGGACAACAAGGAATTA+AGG - tig0022816:81924-81943 Msa1402300:intron 40.0%
GGACAACAAGGAATTAAGGT+CGG - tig0022816:81928-81947 Msa1402300:intron 40.0%
GACAACAAGGAATTAAGGTC+GGG - tig0022816:81929-81948 Msa1402300:intron 40.0%
GTAGTGTTTCTCACACTTGT+TGG + tig0022816:82027-82046 None:intergenic 40.0%
TCCCAGCAGATATCAAAAAG+GGG + tig0022816:82095-82114 None:intergenic 40.0%
CTCCCAGCAGATATCAAAAA+GGG + tig0022816:82096-82115 None:intergenic 40.0%
! ATTTTCTCATACGGCGTGTT+TGG - tig0022816:82126-82145 Msa1402300:intron 40.0%
! TGTTACATTACTCGGTTTGC+CGG - tig0022816:82170-82189 Msa1402300:intron 40.0%
TCAATGCCATAGTAGTTGCC+AGG - tig0022816:80528-80547 Msa1402300:CDS 45.0%
! GGGGTTTAGGAAGATTTGGT+TGG - tig0022816:80822-80841 Msa1402300:CDS 45.0%
ACACCGACGAATACCAAACA+TGG - tig0022816:80918-80937 Msa1402300:CDS 45.0%
GAATCTGATGCACATGTGGT+CGG + tig0022816:80956-80975 None:intergenic 45.0%
TCCCATGACCATGAAGACTT+AGG + tig0022816:80995-81014 None:intergenic 45.0%
AAGTCTTCATGGTCATGGGA+TGG - tig0022816:80995-81014 Msa1402300:CDS 45.0%
CCGCAATCTTCGTTCTTCAT+TGG - tig0022816:81085-81104 Msa1402300:CDS 45.0%
! CTGAGAAAGTTAGTACCGAG+TGG - tig0022816:81311-81330 Msa1402300:CDS 45.0%
! AGAAAGTTAGTACCGAGTGG+AGG - tig0022816:81314-81333 Msa1402300:CDS 45.0%
! TTAGGGTATGTGTCATTGCC+TGG - tig0022816:81373-81392 Msa1402300:CDS 45.0%
TTGCATTAGAAGCCATCTCG+GGG + tig0022816:81503-81522 None:intergenic 45.0%
CTTGCATTAGAAGCCATCTC+GGG + tig0022816:81504-81523 None:intergenic 45.0%
CCTTGCATTAGAAGCCATCT+CGG + tig0022816:81505-81524 None:intergenic 45.0%
AGGACGACATCAAGAAGCTA+TGG - tig0022816:81522-81541 Msa1402300:CDS 45.0%
AGCCCCGGTGAATAAACAAA+AGG - tig0022816:81606-81625 Msa1402300:CDS 45.0%
CTGCAATTGACGAGTAAAGC+TGG + tig0022816:81642-81661 None:intergenic 45.0%
CGTCAATTGCAGAGTTGTTC+GGG - tig0022816:81650-81669 Msa1402300:CDS 45.0%
AGAGTTGTTCGGGAGAAGTT+GGG - tig0022816:81660-81679 Msa1402300:CDS 45.0%
!! AAGTTGGGCTCTAAAGCGAA+TGG - tig0022816:81675-81694 Msa1402300:intron 45.0%
! GCGGTAATGGTTCTTGGTAT+TGG - tig0022816:81700-81719 Msa1402300:intron 45.0%
! TTTGGAATGCCTTTAGCCGT+TGG - tig0022816:81739-81758 Msa1402300:intron 45.0%
CCTAAGTTTCCAACGGCTAA+AGG + tig0022816:81751-81770 None:intergenic 45.0%
CCTTTAGCCGTTGGAAACTT+AGG - tig0022816:81748-81767 Msa1402300:intron 45.0%
GATGGAAATACCGTCTTGTG+TGG - tig0022816:81807-81826 Msa1402300:intron 45.0%
CTTGTATTCTCGGTAGCTAG+TGG - tig0022816:81871-81890 Msa1402300:intron 45.0%
ATTGTTGGATCGGGACAACA+AGG - tig0022816:81916-81935 Msa1402300:intron 45.0%
! AGCCCCTTTTTGATATCTGC+TGG - tig0022816:82090-82109 Msa1402300:intron 45.0%
! GCCCCTTTTTGATATCTGCT+GGG - tig0022816:82091-82110 Msa1402300:intron 45.0%
CCTCCCAGCAGATATCAAAA+AGG + tig0022816:82097-82116 None:intergenic 45.0%
! CCTTTTTGATATCTGCTGGG+AGG - tig0022816:82094-82113 Msa1402300:intron 45.0%
AGAGCTAATCCTCTTGACTC+CGG + tig0022816:82192-82211 None:intergenic 45.0%
!! AGATTAAATATAAATAAATA+GGG + tig0022816:80585-80604 None:intergenic 5.0%
TTCTCTCATGGCGGCTATAG+AGG - tig0022816:80005-80024 Msa1402300:three_prime_UTR 50.0%
GAAGCTTGGGGTATGGAAGA+AGG + tig0022816:80036-80055 None:intergenic 50.0%
CTCAGAAGAAGCTTGGGGTA+TGG + tig0022816:80043-80062 None:intergenic 50.0%
CATACCCCAAGCTTCTTCTG+AGG - tig0022816:80041-80060 Msa1402300:three_prime_UTR 50.0%
! GGCTTTTTGCGTTCGTCGAT+TGG - tig0022816:81265-81284 Msa1402300:CDS 50.0%
CCGAGATGGCTTCTAATGCA+AGG - tig0022816:81502-81521 Msa1402300:CDS 50.0%
CAGAGTTGTTCGGGAGAAGT+TGG - tig0022816:81659-81678 Msa1402300:CDS 50.0%
!! TTGGGCTCTAAAGCGAATGG+TGG - tig0022816:81678-81697 Msa1402300:intron 50.0%
!! AAAGCGAATGGTGGCGGTAA+TGG - tig0022816:81687-81706 Msa1402300:intron 50.0%
!! ATGGTGGCGGTAATGGTTCT+TGG - tig0022816:81694-81713 Msa1402300:intron 50.0%
ACCGAGTGGAGGTTCACTGT+TGG - tig0022816:81325-81344 Msa1402300:CDS 55.0%
CCCAACAGTGAACCTCCACT+CGG + tig0022816:81329-81348 None:intergenic 55.0%
CCGAGTGGAGGTTCACTGTT+GGG - tig0022816:81326-81345 Msa1402300:CDS 55.0%
TTGTTACCGAGTCCCCGAGA+TGG - tig0022816:81488-81507 Msa1402300:CDS 55.0%
TAGAAGCCATCTCGGGGACT+CGG + tig0022816:81497-81516 None:intergenic 55.0%
!! GGCTCTAAAGCGAATGGTGG+CGG - tig0022816:81681-81700 Msa1402300:intron 55.0%
! CTCGGTTTGCCGGAGTCAAG+AGG - tig0022816:82180-82199 Msa1402300:intron 60.0%
Chromosome Type Strat End Strand Name
tig0022816 gene 79913 82554 79913 ID=Msa1402300;Name=Msa1402300
tig0022816 mRNA 79913 82554 79913 ID=Msa1402300-mRNA-1;Parent=Msa1402300;Name=Msa1402300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=99|1|1|1|0|0.5|2|294|508
tig0022816 exon 79913 81682 79913 ID=Msa1402300-mRNA-1:exon:18839;Parent=Msa1402300-mRNA-1
tig0022816 exon 82405 82554 82405 ID=Msa1402300-mRNA-1:exon:18838;Parent=Msa1402300-mRNA-1
tig0022816 five_prime_UTR 82456 82554 82456 ID=Msa1402300-mRNA-1:five_prime_utr;Parent=Msa1402300-mRNA-1
tig0022816 CDS 82405 82455 82405 ID=Msa1402300-mRNA-1:cds;Parent=Msa1402300-mRNA-1
tig0022816 CDS 80207 81682 80207 ID=Msa1402300-mRNA-1:cds;Parent=Msa1402300-mRNA-1
tig0022816 three_prime_UTR 79913 80206 79913 ID=Msa1402300-mRNA-1:three_prime_utr;Parent=Msa1402300-mRNA-1
Gene Sequence

>Msa1402300

ATGGCGGCTATAGAGGAGTTACCTTCTTCCATACCCCAAGCTTCTTCTGAGGAAAAAGTGATTCCTTCAACAGATGAAATGATGGAAAGGGGTTTAGGAAGATTTGGTTGGGTAGAATTTGTGCAATGCGTTCTTGTTTCATTCGCAATGTTCTTTGACGCACAACAATCGTTCATAACGATTTACACCGACGAATACCAAACATGGCATTGTACGAATCCGACCACATGTGCATCAGATTCTAACATCTGCAAAATTCCTAAGTCTTCATGGTCATGGGATGGACCAGCACACAAAACAGTGATATCTCAATGGAGTCTTGAATGTGCTAGTAGCTTTGTAACAGGTTTACCGCAATCTTCGTTCTTCATTGGTTGCCTTTTCGGTTCGTTTCTTCTAGCAACTTTAGCTGATACATCACTTGGTAGAAAGAACATGCTTGTTATGTCTTGTTTATCGATGTCTATAGTTTCAATTCTCATTGTTTTCTCTACCAATGTTTGGATTTATTCTGTTTTTAAATTCTTGATTGGCTTTTTGCGTTCGTCGATTGGAACTTGTGTTCTTGTTTTGCTAACTGAGAAAGTTAGTACCGAGTGGAGGTTCACTGTTGGGATTGTCGAATATTTCTGCTTCACATTAGGGTATGTGTCATTGCCTGGTATAGCTTATCTTAATAGATATAATTCGTGGAAATCGGTGTATATTTGGACATCGGTTCCTGCAATTATTTACTCAATCATTGCTTATATCTTTGTTACCGAGTCCCCGAGATGGCTTCTAATGCAAGGACGACATCAAGAAGCTATGGCAATGCTTAAAGGAGTTTCTTCTGTAGAGAACAGTGATGATATGATAGTAAGTTTAATAGAAGCCCCGGTGAATAAACAAAAGGCTTCGATTTTCCAGCTTTACTCGTCAATTGCAGAGTTGTTCGGGAGAAGTTGGGCTCTAAAGCGAATGGTGGCGGTAATGGTTCTTGGTATTGGAATTGGAATGGTTTATTTTGGAATGCCTTTAGCCGTTGGAAACTTAGGTTTTGACATTTATTTGGCTGTTGTGTTCAACGGTTTGATGGAAATACCGTCTTGTGTGGCTACTTATTTCTTGGAGAATCGCCAAAGAAAGCCATCGATTCTTGTATTCTCGGTAGCTAGTGGCATATGTTGTATAATGTGTGTTATTGTTGGATCGGGACAACAAGGAATTAAGGTCGGGTTAGCGATGACATCGTTTTTCAGTGCTTGCACAGCTTATAATGTGTTTCTCATTTACATTATTGAGCTGTTTCCAACAAGTGTGAGAAACACTACAACATCATTGGTGAGACAAGCTATTGTTTTTGGTAACATTTTCAGCCCCTTTTTGATATCTGCTGGGAGGAAAAATGACATTTTCTCATACGGCGTGTTTGGAGTTGTTATCATGTTGTCTTGTGTTACATTACTCGGTTTGCCGGAGTCAAGAGGATTAGCTCTTTCAGATACCATGGATCAACAAGAGAAGAAAGATGACATGTCAGTTTAA

Protein sequence

>Msa1402300

MAAIEELPSSIPQASSEEKVIPSTDEMMERGLGRFGWVEFVQCVLVSFAMFFDAQQSFITIYTDEYQTWHCTNPTTCASDSNICKIPKSSWSWDGPAHKTVISQWSLECASSFVTGLPQSSFFIGCLFGSFLLATLADTSLGRKNMLVMSCLSMSIVSILIVFSTNVWIYSVFKFLIGFLRSSIGTCVLVLLTEKVSTEWRFTVGIVEYFCFTLGYVSLPGIAYLNRYNSWKSVYIWTSVPAIIYSIIAYIFVTESPRWLLMQGRHQEAMAMLKGVSSVENSDDMIVSLIEAPVNKQKASIFQLYSSIAELFGRSWALKRMVAVMVLGIGIGMVYFGMPLAVGNLGFDIYLAVVFNGLMEIPSCVATYFLENRQRKPSILVFSVASGICCIMCVIVGSGQQGIKVGLAMTSFFSACTAYNVFLIYIIELFPTSVRNTTTSLVRQAIVFGNIFSPFLISAGRKNDIFSYGVFGVVIMLSCVTLLGLPESRGLALSDTMDQQEKKDDMSV*