AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0672980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672980 MtrunA17_Chr4g0013581 98.225 507 9 0 1 507 1 507 0.0 1021
Msa0672980 MtrunA17_Chr4g0013591 82.941 510 80 2 1 504 1 509 0.0 850
Msa0672980 MtrunA17_Chr8g0353161 70.120 502 146 2 6 504 8 508 0.0 722
Msa0672980 MtrunA17_Chr8g0353141 70.120 502 146 3 6 504 8 508 0.0 719
Msa0672980 MtrunA17_Chr5g0435421 67.123 511 161 2 1 504 1 511 0.0 678
Msa0672980 MtrunA17_Chr5g0437201 65.825 515 160 3 6 504 8 522 0.0 665
Msa0672980 MtrunA17_Chr8g0356471 44.747 514 267 6 10 507 9 521 3.91e-166 480
Msa0672980 MtrunA17_Chr2g0319001 31.323 514 327 8 7 501 17 523 9.43e-81 261
Msa0672980 MtrunA17_Chr4g0067801 47.032 219 112 2 154 371 1 216 6.36e-61 199
Msa0672980 MtrunA17_Chr4g0042131 29.167 384 259 6 132 507 43 421 1.62e-45 164
Msa0672980 MtrunA17_Chr2g0319011 29.904 311 194 6 205 496 3 308 2.59e-31 123
Msa0672980 MtrunA17_Chr2g0319021 34.862 109 71 0 25 133 32 140 4.50e-20 86.7
Msa0672980 MtrunA17_Chr4g0042121 32.283 127 79 3 7 129 21 144 2.79e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672980 AT1G16390.1 48.795 498 244 6 15 503 14 509 1.78e-175 504
Msa0672980 AT1G79360.1 47.400 500 248 6 23 507 19 518 1.68e-171 494
Msa0672980 AT1G79410.1 42.970 505 276 8 7 505 9 507 1.10e-137 407
Msa0672980 AT1G16370.1 42.331 489 268 7 25 505 31 513 5.15e-137 406
Msa0672980 AT1G73220.1 35.465 516 317 6 2 507 23 532 7.72e-105 324
Msa0672980 AT3G20660.1 29.377 514 340 11 4 507 17 517 3.37e-71 236
Msa0672980 AT3G51490.3 28.902 173 115 3 127 292 3 174 1.50e-12 70.5
Msa0672980 AT3G51490.2 28.902 173 115 3 127 292 53 224 1.87e-12 70.5
Msa0672980 AT3G51490.1 28.902 173 115 3 127 292 53 224 2.01e-12 70.1
Msa0672980 AT1G34580.2 24.057 424 267 18 120 504 37 444 1.27e-11 67.0
Msa0672980 AT1G34580.1 24.057 424 267 18 120 504 87 494 2.01e-11 66.6
Msa0672980 AT1G20840.2 26.415 159 106 2 141 292 68 222 7.30e-11 65.5
Msa0672980 AT1G20840.1 26.415 159 106 2 141 292 68 222 7.30e-11 65.5

Find 109 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATTGGAATGGTTTATTT+TGG 0.180720 4_4:+18731506 Msa0672980:CDS
CGTGGAAATCGGTGTATATT+TGG 0.206428 4_4:+18731207 Msa0672980:CDS
ATGTGTACATGAAACATCTT+AGG 0.247780 4_4:+18732296 Msa0672980:three_prime_UTR
GAATATTTCTGCTTCACATT+AGG 0.262371 4_4:+18731140 Msa0672980:CDS
AATATTTCTGCTTCACATTA+GGG 0.272078 4_4:+18731141 Msa0672980:CDS
GAAAGGGGTTTAGGAAGATT+TGG 0.291856 4_4:+18730603 Msa0672980:CDS
CCTCCCAGCAGATATCAAAA+AGG 0.297351 4_4:-18731879 None:intergenic
TTGTGTGGCTACTTATTTCT+TGG 0.297902 4_4:+18731607 Msa0672980:CDS
GAAGCTATGGCAATGCTTAA+AGG 0.298486 4_4:+18731320 Msa0672980:CDS
CAAGAATCGATGGCTTTCTT+TGG 0.301329 4_4:-18731637 None:intergenic
ATGGTTCTTGGTATTGGAAT+TGG 0.308137 4_4:+18731491 Msa0672980:CDS
GCAAAATTCCTAAGTCTTCA+TGG 0.320997 4_4:+18730769 Msa0672980:CDS
CCGCAATCTTCGTTCTTCAT+TGG 0.331379 4_4:+18730870 Msa0672980:CDS
CGTCAATTGCAGAGTTGTTC+GGG 0.343455 4_4:+18731435 Msa0672980:CDS
GAAATGATGGAAAGGGGTTT+AGG 0.347800 4_4:+18730594 Msa0672980:CDS
GCCATCGATTCTTGTATTCT+CGG 0.352206 4_4:+18731646 Msa0672980:CDS
TGTTACATTACTCGGTTTGC+CGG 0.361066 4_4:+18731955 Msa0672980:CDS
CCTTTAGCCGTTGGAAACTT+AGG 0.365016 4_4:+18731533 Msa0672980:CDS
TGTGCTAGTAGCTTTGTAAC+AGG 0.368806 4_4:+18730843 Msa0672980:CDS
TTCTTAGGTCATAAGCTTCA+TGG 0.370163 4_4:-18732320 None:intergenic
TGTATAATGTGTGTTATTGT+TGG 0.371116 4_4:+18731686 Msa0672980:CDS
GCGGTAATGGTTCTTGGTAT+TGG 0.379219 4_4:+18731485 Msa0672980:CDS
TCGTCAATTGCAGAGTTGTT+CGG 0.383274 4_4:+18731434 Msa0672980:CDS
TTCTCTCATGGCGGCTATAG+AGG 0.389503 4_4:+18729789 Msa0672980:exon
TCCATCATTTCATCTGTTGA+AGG 0.402045 4_4:-18730582 None:intergenic
CAGAGTTGTTCGGGAGAAGT+TGG 0.405119 4_4:+18731444 Msa0672980:CDS
TAGATATAATTCGTGGAAAT+CGG 0.408726 4_4:+18731196 Msa0672980:CDS
ATATACCTCGGAAGAAGCTT+GGG 0.417250 4_4:-18729830 None:intergenic
GATTCGTACAATGCCATGTT+TGG 0.423157 4_4:-18730716 None:intergenic
ATGATTGAGTAAATAATTGC+AGG 0.429182 4_4:-18731239 None:intergenic
TTTCTTCTCTTGTTGATCCA+TGG 0.431898 4_4:-18732005 None:intergenic
AAAGCGAATGGTGGCGGTAA+TGG 0.437000 4_4:+18731472 Msa0672980:CDS
ATGACATGTCAGTTTAAAAT+CGG 0.439222 4_4:+18732029 Msa0672980:exon
CCGAGTGGAGGTTCACTGTT+GGG 0.441877 4_4:+18731111 Msa0672980:CDS
ATGGTGGCGGTAATGGTTCT+TGG 0.443762 4_4:+18731479 Msa0672980:CDS
TATATACCTCGGAAGAAGCT+TGG 0.445381 4_4:-18729831 None:intergenic
AACAGATGAAATGATGGAAA+GGG 0.447149 4_4:+18730587 Msa0672980:CDS
GTCACGTTTGGTTTATGTAA+AGG 0.450575 4_4:-18729697 None:intergenic
ATCGGGACAACAAGGAATTA+AGG 0.453209 4_4:+18731709 Msa0672980:CDS
TTCCTAAGTCTTCATGGTCA+TGG 0.455731 4_4:+18730775 Msa0672980:CDS
TTTGGAATGCCTTTAGCCGT+TGG 0.456255 4_4:+18731524 Msa0672980:CDS
AGAGTTGTTCGGGAGAAGTT+GGG 0.457783 4_4:+18731445 Msa0672980:CDS
TTGTCTTGTGTTACATTACT+CGG 0.467042 4_4:+18731947 Msa0672980:CDS
TGTTGTGTTCAACGGTTTGA+TGG 0.467189 4_4:+18731574 Msa0672980:CDS
TGTTACTTATCAGTTAATAG+TGG 0.470031 4_4:-18732239 None:intergenic
TATTTGGCTGTTGTGTTCAA+CGG 0.483478 4_4:+18731566 Msa0672980:CDS
ATCTTAATAGATATAATTCG+TGG 0.492171 4_4:+18731189 Msa0672980:CDS
CTTGCATTAGAAGCCATCTC+GGG 0.492815 4_4:-18731286 None:intergenic
CTCGGAAGAAGCTTGGGGTA+TGG 0.496504 4_4:-18729824 None:intergenic
CTGCAATTGACGAGTAAAGC+TGG 0.497090 4_4:-18731424 None:intergenic
TAGAAGCCATCTCGGGGACT+CGG 0.499415 4_4:-18731279 None:intergenic
CCTTGCATTAGAAGCCATCT+CGG 0.501206 4_4:-18731287 None:intergenic
CCTAAGTTTCCAACGGCTAA+AGG 0.502513 4_4:-18731533 None:intergenic
GTAGTGTTTCTCACACTTGT+TGG 0.504323 4_4:-18731809 None:intergenic
ATGTGTGTTATTGTTGGATC+GGG 0.504656 4_4:+18731692 Msa0672980:CDS
GAGAAACACTACAACATCAT+TGG 0.509406 4_4:+18731820 Msa0672980:CDS
TCCTTCAACAGATGAAATGA+TGG 0.510742 4_4:+18730581 Msa0672980:CDS
TTAGGGTATGTGTCATTGCC+TGG 0.518083 4_4:+18731158 Msa0672980:CDS
GGCTCTAAAGCGAATGGTGG+CGG 0.520323 4_4:+18731466 Msa0672980:CDS
TCTTGGTATTGGAATTGGAA+TGG 0.520997 4_4:+18731496 Msa0672980:CDS
GAAGCTTGGGGTATGGAAGA+AGG 0.522165 4_4:-18729817 None:intergenic
TAAAAGCAAGTTTACCATTG+TGG 0.525109 4_4:-18732208 None:intergenic
TCCTAAGTCTTCATGGTCAT+GGG 0.525136 4_4:+18730776 Msa0672980:CDS
GAATTGTTACCTTCAAAAGA+AGG 0.526708 4_4:-18732186 None:intergenic
GGGTTTAGGAAGATTTGGTT+GGG 0.532129 4_4:+18730608 Msa0672980:CDS
GGGGTTTAGGAAGATTTGGT+TGG 0.533651 4_4:+18730607 Msa0672980:CDS
CTAGAAGAAACGAACCGAAA+AGG 0.540466 4_4:-18730896 None:intergenic
AGCCCCGGTGAATAAACAAA+AGG 0.542980 4_4:+18731391 Msa0672980:CDS
AATGTGTGTTATTGTTGGAT+CGG 0.549320 4_4:+18731691 Msa0672980:CDS
CTTGTATTCTCGGTAGCTAG+TGG 0.549620 4_4:+18731656 Msa0672980:CDS
CAACAGATGAAATGATGGAA+AGG 0.550084 4_4:+18730586 Msa0672980:CDS
ACAAAACAGTGATATCTCAA+TGG 0.553373 4_4:+18730811 Msa0672980:CDS
ATGCCATGTTTGGTATTCGT+CGG 0.558939 4_4:-18730706 None:intergenic
GACAACAAGGAATTAAGGTC+GGG 0.563112 4_4:+18731714 Msa0672980:CDS
CTATTAAGATAAGCTATACC+AGG 0.565268 4_4:-18731176 None:intergenic
ATTAGCTCTTTCAGATACCA+TGG 0.565402 4_4:+18731988 Msa0672980:CDS
CTCGGTTTGCCGGAGTCAAG+AGG 0.567370 4_4:+18731965 Msa0672980:CDS
TCCCATGACCATGAAGACTT+AGG 0.573627 4_4:-18730777 None:intergenic
AGGACGACATCAAGAAGCTA+TGG 0.579332 4_4:+18731307 Msa0672980:CDS
AAGTCTTCATGGTCATGGGA+TGG 0.580758 4_4:+18730780 Msa0672980:CDS
ACTTTAGCTGATACATCACT+TGG 0.581500 4_4:+18730921 Msa0672980:CDS
AGTAAGTTTAATAGAAGCCC+CGG 0.581651 4_4:+18731376 Msa0672980:CDS
ACCGAGTGGAGGTTCACTGT+TGG 0.582904 4_4:+18731110 Msa0672980:CDS
AACAGAATAAATCCAAACAT+TGG 0.591278 4_4:-18731012 None:intergenic
GAATCTGATGCACATGTGGT+CGG 0.594235 4_4:-18730738 None:intergenic
ACAGATGAAATGATGGAAAG+GGG 0.595316 4_4:+18730588 Msa0672980:CDS
ATCGGTGTATATTTGGACAT+CGG 0.596172 4_4:+18731214 Msa0672980:CDS
TTGTTACCGAGTCCCCGAGA+TGG 0.599721 4_4:+18731273 Msa0672980:CDS
ACCGAGAATACAAGAATCGA+TGG 0.601771 4_4:-18731647 None:intergenic
GGACAACAAGGAATTAAGGT+CGG 0.602421 4_4:+18731713 Msa0672980:CDS
AGAGCTAATCCTCTTGACTC+CGG 0.602963 4_4:-18731974 None:intergenic
GATGGAAATACCGTCTTGTG+TGG 0.605544 4_4:+18731592 Msa0672980:CDS
TGTGTACATGAAACATCTTA+GGG 0.615397 4_4:+18732297 Msa0672980:three_prime_UTR
GTCAAAACCTAAGTTTCCAA+CGG 0.615468 4_4:-18731540 None:intergenic
ATTGTTGGATCGGGACAACA+AGG 0.619158 4_4:+18731701 Msa0672980:CDS
CCGAGATGGCTTCTAATGCA+AGG 0.623082 4_4:+18731287 Msa0672980:CDS
AAATAAGTAGCCACACAAGA+CGG 0.630270 4_4:-18731602 None:intergenic
TGAAGGTAACAATTCCACAA+TGG 0.632979 4_4:+18732194 Msa0672980:three_prime_UTR
AAGTTGGGCTCTAAAGCGAA+TGG 0.635588 4_4:+18731460 Msa0672980:CDS
CATACCCCAAGCTTCTTCCG+AGG 0.637475 4_4:+18729825 Msa0672980:CDS
ACACCGACGAATACCAAACA+TGG 0.647674 4_4:+18730703 Msa0672980:CDS
CCCAACAGTGAACCTCCACT+CGG 0.649161 4_4:-18731111 None:intergenic
TTGCATTAGAAGCCATCTCG+GGG 0.669568 4_4:-18731285 None:intergenic
CTGAGAAAGTTAGTACCGAG+TGG 0.671581 4_4:+18731096 Msa0672980:CDS
TTGGGCTCTAAAGCGAATGG+TGG 0.677343 4_4:+18731463 Msa0672980:CDS
TATACCTCGGAAGAAGCTTG+GGG 0.677450 4_4:-18729829 None:intergenic
GTTAGAATCTGATGCACATG+TGG 0.681692 4_4:-18730742 None:intergenic
AGAAAGTTAGTACCGAGTGG+AGG 0.706492 4_4:+18731099 Msa0672980:CDS
CCAATGAAGAACGAAGATTG+CGG 0.713248 4_4:-18730870 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CCAATTTTATATAATTATTT+TGG - chr4_4:18730279-18730298 None:intergenic 10.0%
!! CCAAAATAATTATATAAAAT+TGG + chr4_4:18730276-18730295 Msa0672980:intron 10.0%
!! CAGATTAAATATAAATAAAT+AGG - chr4_4:18730371-18730390 None:intergenic 10.0%
!! AGCAATATTTATTGAAAAAA+TGG - chr4_4:18729727-18729746 None:intergenic 15.0%
!! TAATTAAGATGATAAAGTAA+CGG - chr4_4:18730007-18730026 None:intergenic 15.0%
!!! GGTTTGTTTATATATAATTA+GGG - chr4_4:18730031-18730050 None:intergenic 15.0%
!!! TGGTTTGTTTATATATAATT+AGG - chr4_4:18730032-18730051 None:intergenic 15.0%
!!! ATTTTAATAGCAATTAGAAA+TGG + chr4_4:18730497-18730516 Msa0672980:intron 15.0%
!! AAAACTAAAAAATTCAATCC+TGG - chr4_4:18730334-18730353 None:intergenic 20.0%
!! TGCTTTCAATTGAATAATAA+AGG - chr4_4:18730437-18730456 None:intergenic 20.0%
!! GAATTAGAATTAGTTGAAAT+TGG - chr4_4:18730540-18730559 None:intergenic 20.0%
!!! TCTGTTTTTAAATTCTTGAT+TGG + chr4_4:18731029-18731048 Msa0672980:CDS 20.0%
!! ATCTTAATAGATATAATTCG+TGG + chr4_4:18731189-18731208 Msa0672980:CDS 20.0%
!!! AAAAATGACATTTTCTCATA+CGG + chr4_4:18731902-18731921 Msa0672980:CDS 20.0%
! GTTTATGTTTGTATATACCT+CGG - chr4_4:18729845-18729864 None:intergenic 25.0%
! TCACTACTATCAAAATCATT+TGG + chr4_4:18729932-18729951 Msa0672980:intron 25.0%
! ATCAAAGTCAAACAAAAACT+TGG - chr4_4:18730172-18730191 None:intergenic 25.0%
! CAATTGAATAATAAAGGCAA+AGG - chr4_4:18730431-18730450 None:intergenic 25.0%
! AATAGTAATAGCAATAGCAT+AGG + chr4_4:18730462-18730481 Msa0672980:intron 25.0%
! TAATTCTAATTCTATTGAGC+AGG + chr4_4:18730548-18730567 Msa0672980:intron 25.0%
! AACAGAATAAATCCAAACAT+TGG - chr4_4:18731015-18731034 None:intergenic 25.0%
!! AATATTTCTGCTTCACATTA+GGG + chr4_4:18731141-18731160 Msa0672980:CDS 25.0%
! TAGATATAATTCGTGGAAAT+CGG + chr4_4:18731196-18731215 Msa0672980:CDS 25.0%
! ATGATTGAGTAAATAATTGC+AGG - chr4_4:18731242-18731261 None:intergenic 25.0%
!!! CTTAGGTTTTGACATTTATT+TGG + chr4_4:18731550-18731569 Msa0672980:CDS 25.0%
!! TGTATAATGTGTGTTATTGT+TGG + chr4_4:18731686-18731705 Msa0672980:CDS 25.0%
!! ATGACATGTCAGTTTAAAAT+CGG + chr4_4:18732029-18732048 Msa0672980:exon 25.0%
!! TGTTACTTATCAGTTAATAG+TGG - chr4_4:18732242-18732261 None:intergenic 25.0%
!!! TCTCATCTTTTTTTCTCTCA+TGG + chr4_4:18729777-18729796 Msa0672980:exon 30.0%
ATAAACAAACCAAAAGTCCT+TGG + chr4_4:18730040-18730059 Msa0672980:intron 30.0%
TAATAAAATGCAACTAGCCA+AGG - chr4_4:18730060-18730079 None:intergenic 30.0%
ATAGCAATTAGAAATGGCAT+TGG + chr4_4:18730503-18730522 Msa0672980:intron 30.0%
! AACAGATGAAATGATGGAAA+GGG + chr4_4:18730587-18730606 Msa0672980:CDS 30.0%
ACAAAACAGTGATATCTCAA+TGG + chr4_4:18730811-18730830 Msa0672980:CDS 30.0%
! TTGTTTTCTCTACCAATGTT+TGG + chr4_4:18731000-18731019 Msa0672980:CDS 30.0%
! GAATATTTCTGCTTCACATT+AGG + chr4_4:18731140-18731159 Msa0672980:CDS 30.0%
CTATTAAGATAAGCTATACC+AGG - chr4_4:18731179-18731198 None:intergenic 30.0%
! GGAATTGGAATGGTTTATTT+TGG + chr4_4:18731506-18731525 Msa0672980:CDS 30.0%
! AATGTGTGTTATTGTTGGAT+CGG + chr4_4:18731691-18731710 Msa0672980:CDS 30.0%
TTGTCTTGTGTTACATTACT+CGG + chr4_4:18731947-18731966 Msa0672980:CDS 30.0%
!!! TCACGTTTTTTTTTGTTGCT+TGG + chr4_4:18732079-18732098 Msa0672980:three_prime_UTR 30.0%
!!! GTTTTTTTTTGTTGCTTGGT+AGG + chr4_4:18732083-18732102 Msa0672980:three_prime_UTR 30.0%
GAATTGTTACCTTCAAAAGA+AGG - chr4_4:18732189-18732208 None:intergenic 30.0%
TAAAAGCAAGTTTACCATTG+TGG - chr4_4:18732211-18732230 None:intergenic 30.0%
ATGTGTACATGAAACATCTT+AGG + chr4_4:18732296-18732315 Msa0672980:three_prime_UTR 30.0%
TGTGTACATGAAACATCTTA+GGG + chr4_4:18732297-18732316 Msa0672980:three_prime_UTR 30.0%
! GTCACGTTTGGTTTATGTAA+AGG - chr4_4:18729700-18729719 None:intergenic 35.0%
AAAAATGGATGTGTCACGTT+TGG - chr4_4:18729712-18729731 None:intergenic 35.0%
!!! CATCTTTTTTTCTCTCATGG+CGG + chr4_4:18729780-18729799 Msa0672980:exon 35.0%
TCCTTCAACAGATGAAATGA+TGG + chr4_4:18730581-18730600 Msa0672980:CDS 35.0%
TCCATCATTTCATCTGTTGA+AGG - chr4_4:18730585-18730604 None:intergenic 35.0%
! CAACAGATGAAATGATGGAA+AGG + chr4_4:18730586-18730605 Msa0672980:CDS 35.0%
! ACAGATGAAATGATGGAAAG+GGG + chr4_4:18730588-18730607 Msa0672980:CDS 35.0%
GCAAAATTCCTAAGTCTTCA+TGG + chr4_4:18730769-18730788 Msa0672980:CDS 35.0%
!! TTCTTCATTGGTTGCCTTTT+CGG + chr4_4:18730882-18730901 Msa0672980:CDS 35.0%
ACTTTAGCTGATACATCACT+TGG + chr4_4:18730921-18730940 Msa0672980:CDS 35.0%
ATCGGTGTATATTTGGACAT+CGG + chr4_4:18731214-18731233 Msa0672980:CDS 35.0%
AGTAAGTTTAATAGAAGCCC+CGG + chr4_4:18731376-18731395 Msa0672980:CDS 35.0%
!! AAGCCTTTTGTTTATTCACC+GGG - chr4_4:18731397-18731416 None:intergenic 35.0%
!! GAAGCCTTTTGTTTATTCAC+CGG - chr4_4:18731398-18731417 None:intergenic 35.0%
! ATGGTTCTTGGTATTGGAAT+TGG + chr4_4:18731491-18731510 Msa0672980:CDS 35.0%
! TCTTGGTATTGGAATTGGAA+TGG + chr4_4:18731496-18731515 Msa0672980:CDS 35.0%
GTCAAAACCTAAGTTTCCAA+CGG - chr4_4:18731543-18731562 None:intergenic 35.0%
TATTTGGCTGTTGTGTTCAA+CGG + chr4_4:18731566-18731585 Msa0672980:CDS 35.0%
AAATAAGTAGCCACACAAGA+CGG - chr4_4:18731605-18731624 None:intergenic 35.0%
! TTGTGTGGCTACTTATTTCT+TGG + chr4_4:18731607-18731626 Msa0672980:CDS 35.0%
! ATGTGTGTTATTGTTGGATC+GGG + chr4_4:18731692-18731711 Msa0672980:CDS 35.0%
GAGAAACACTACAACATCAT+TGG + chr4_4:18731820-18731839 Msa0672980:CDS 35.0%
! GTGAGACAAGCTATTGTTTT+TGG + chr4_4:18731842-18731861 Msa0672980:CDS 35.0%
! ATTAGCTCTTTCAGATACCA+TGG + chr4_4:18731988-18732007 Msa0672980:CDS 35.0%
TTTCTTCTCTTGTTGATCCA+TGG - chr4_4:18732008-18732027 None:intergenic 35.0%
! TGAGTTTCACCTTCTTTTGA+AGG + chr4_4:18732177-18732196 Msa0672980:three_prime_UTR 35.0%
TGAAGGTAACAATTCCACAA+TGG + chr4_4:18732194-18732213 Msa0672980:three_prime_UTR 35.0%
ATATACCTCGGAAGAAGCTT+GGG - chr4_4:18729833-18729852 None:intergenic 40.0%
TATATACCTCGGAAGAAGCT+TGG - chr4_4:18729834-18729853 None:intergenic 40.0%
AATAACAACGTGCACAAGCA+TGG - chr4_4:18730238-18730257 None:intergenic 40.0%
TTCAATCCTGGCAACTACTA+TGG - chr4_4:18730322-18730341 None:intergenic 40.0%
! GAAATGATGGAAAGGGGTTT+AGG + chr4_4:18730594-18730613 Msa0672980:CDS 40.0%
GAAAGGGGTTTAGGAAGATT+TGG + chr4_4:18730603-18730622 Msa0672980:CDS 40.0%
! GGGTTTAGGAAGATTTGGTT+GGG + chr4_4:18730608-18730627 Msa0672980:CDS 40.0%
ATGCCATGTTTGGTATTCGT+CGG - chr4_4:18730709-18730728 None:intergenic 40.0%
GATTCGTACAATGCCATGTT+TGG - chr4_4:18730719-18730738 None:intergenic 40.0%
GTTAGAATCTGATGCACATG+TGG - chr4_4:18730745-18730764 None:intergenic 40.0%
TTCCTAAGTCTTCATGGTCA+TGG + chr4_4:18730775-18730794 Msa0672980:CDS 40.0%
TCCTAAGTCTTCATGGTCAT+GGG + chr4_4:18730776-18730795 Msa0672980:CDS 40.0%
! GATATCACTGTTTTGTGTGC+TGG - chr4_4:18730807-18730826 None:intergenic 40.0%
!! TGTGCTAGTAGCTTTGTAAC+AGG + chr4_4:18730843-18730862 Msa0672980:CDS 40.0%
CCAATGAAGAACGAAGATTG+CGG - chr4_4:18730873-18730892 None:intergenic 40.0%
CTAGAAGAAACGAACCGAAA+AGG - chr4_4:18730899-18730918 None:intergenic 40.0%
CGTGGAAATCGGTGTATATT+TGG + chr4_4:18731207-18731226 Msa0672980:CDS 40.0%
GAAGCTATGGCAATGCTTAA+AGG + chr4_4:18731320-18731339 Msa0672980:CDS 40.0%
!! AGCCTTTTGTTTATTCACCG+GGG - chr4_4:18731396-18731415 None:intergenic 40.0%
TCGTCAATTGCAGAGTTGTT+CGG + chr4_4:18731434-18731453 Msa0672980:CDS 40.0%
TGTTGTGTTCAACGGTTTGA+TGG + chr4_4:18731574-18731593 Msa0672980:CDS 40.0%
CAAGAATCGATGGCTTTCTT+TGG - chr4_4:18731640-18731659 None:intergenic 40.0%
!! GCCATCGATTCTTGTATTCT+CGG + chr4_4:18731646-18731665 Msa0672980:CDS 40.0%
ACCGAGAATACAAGAATCGA+TGG - chr4_4:18731650-18731669 None:intergenic 40.0%
ATCGGGACAACAAGGAATTA+AGG + chr4_4:18731709-18731728 Msa0672980:CDS 40.0%
GGACAACAAGGAATTAAGGT+CGG + chr4_4:18731713-18731732 Msa0672980:CDS 40.0%
GACAACAAGGAATTAAGGTC+GGG + chr4_4:18731714-18731733 Msa0672980:CDS 40.0%
GTAGTGTTTCTCACACTTGT+TGG - chr4_4:18731812-18731831 None:intergenic 40.0%
TCCCAGCAGATATCAAAAAG+GGG - chr4_4:18731880-18731899 None:intergenic 40.0%
CTCCCAGCAGATATCAAAAA+GGG - chr4_4:18731881-18731900 None:intergenic 40.0%
! ATTTTCTCATACGGCGTGTT+TGG + chr4_4:18731911-18731930 Msa0672980:CDS 40.0%
! TGTTACATTACTCGGTTTGC+CGG + chr4_4:18731955-18731974 Msa0672980:CDS 40.0%
TATACCTCGGAAGAAGCTTG+GGG - chr4_4:18729832-18729851 None:intergenic 45.0%
! TGCAACTAGCCAAGGACTTT+TGG - chr4_4:18730052-18730071 None:intergenic 45.0%
TCAATGCCATAGTAGTTGCC+AGG + chr4_4:18730313-18730332 Msa0672980:intron 45.0%
! GGGGTTTAGGAAGATTTGGT+TGG + chr4_4:18730607-18730626 Msa0672980:CDS 45.0%
ACACCGACGAATACCAAACA+TGG + chr4_4:18730703-18730722 Msa0672980:CDS 45.0%
GAATCTGATGCACATGTGGT+CGG - chr4_4:18730741-18730760 None:intergenic 45.0%
TCCCATGACCATGAAGACTT+AGG - chr4_4:18730780-18730799 None:intergenic 45.0%
AAGTCTTCATGGTCATGGGA+TGG + chr4_4:18730780-18730799 Msa0672980:CDS 45.0%
CCGCAATCTTCGTTCTTCAT+TGG + chr4_4:18730870-18730889 Msa0672980:CDS 45.0%
! CTGAGAAAGTTAGTACCGAG+TGG + chr4_4:18731096-18731115 Msa0672980:CDS 45.0%
! AGAAAGTTAGTACCGAGTGG+AGG + chr4_4:18731099-18731118 Msa0672980:CDS 45.0%
! TTAGGGTATGTGTCATTGCC+TGG + chr4_4:18731158-18731177 Msa0672980:CDS 45.0%
TTGCATTAGAAGCCATCTCG+GGG - chr4_4:18731288-18731307 None:intergenic 45.0%
CTTGCATTAGAAGCCATCTC+GGG - chr4_4:18731289-18731308 None:intergenic 45.0%
CCTTGCATTAGAAGCCATCT+CGG - chr4_4:18731290-18731309 None:intergenic 45.0%
AGGACGACATCAAGAAGCTA+TGG + chr4_4:18731307-18731326 Msa0672980:CDS 45.0%
AGCCCCGGTGAATAAACAAA+AGG + chr4_4:18731391-18731410 Msa0672980:CDS 45.0%
CTGCAATTGACGAGTAAAGC+TGG - chr4_4:18731427-18731446 None:intergenic 45.0%
CGTCAATTGCAGAGTTGTTC+GGG + chr4_4:18731435-18731454 Msa0672980:CDS 45.0%
AGAGTTGTTCGGGAGAAGTT+GGG + chr4_4:18731445-18731464 Msa0672980:CDS 45.0%
!! AAGTTGGGCTCTAAAGCGAA+TGG + chr4_4:18731460-18731479 Msa0672980:CDS 45.0%
! GCGGTAATGGTTCTTGGTAT+TGG + chr4_4:18731485-18731504 Msa0672980:CDS 45.0%
! TTTGGAATGCCTTTAGCCGT+TGG + chr4_4:18731524-18731543 Msa0672980:CDS 45.0%
CCTAAGTTTCCAACGGCTAA+AGG - chr4_4:18731536-18731555 None:intergenic 45.0%
CCTTTAGCCGTTGGAAACTT+AGG + chr4_4:18731533-18731552 Msa0672980:CDS 45.0%
GATGGAAATACCGTCTTGTG+TGG + chr4_4:18731592-18731611 Msa0672980:CDS 45.0%
CTTGTATTCTCGGTAGCTAG+TGG + chr4_4:18731656-18731675 Msa0672980:CDS 45.0%
ATTGTTGGATCGGGACAACA+AGG + chr4_4:18731701-18731720 Msa0672980:CDS 45.0%
! AGCCCCTTTTTGATATCTGC+TGG + chr4_4:18731875-18731894 Msa0672980:CDS 45.0%
! GCCCCTTTTTGATATCTGCT+GGG + chr4_4:18731876-18731895 Msa0672980:CDS 45.0%
CCTCCCAGCAGATATCAAAA+AGG - chr4_4:18731882-18731901 None:intergenic 45.0%
! CCTTTTTGATATCTGCTGGG+AGG + chr4_4:18731879-18731898 Msa0672980:CDS 45.0%
AGAGCTAATCCTCTTGACTC+CGG - chr4_4:18731977-18731996 None:intergenic 45.0%
!! AGATTAAATATAAATAAATA+GGG - chr4_4:18730370-18730389 None:intergenic 5.0%
TTCTCTCATGGCGGCTATAG+AGG + chr4_4:18729789-18729808 Msa0672980:exon 50.0%
GAAGCTTGGGGTATGGAAGA+AGG - chr4_4:18729820-18729839 None:intergenic 50.0%
! GGCTTTTTGCGTTCGTCGAT+TGG + chr4_4:18731050-18731069 Msa0672980:CDS 50.0%
CCGAGATGGCTTCTAATGCA+AGG + chr4_4:18731287-18731306 Msa0672980:CDS 50.0%
CAGAGTTGTTCGGGAGAAGT+TGG + chr4_4:18731444-18731463 Msa0672980:CDS 50.0%
!! TTGGGCTCTAAAGCGAATGG+TGG + chr4_4:18731463-18731482 Msa0672980:CDS 50.0%
!! AAAGCGAATGGTGGCGGTAA+TGG + chr4_4:18731472-18731491 Msa0672980:CDS 50.0%
!! ATGGTGGCGGTAATGGTTCT+TGG + chr4_4:18731479-18731498 Msa0672980:CDS 50.0%
CTCGGAAGAAGCTTGGGGTA+TGG - chr4_4:18729827-18729846 None:intergenic 55.0%
CATACCCCAAGCTTCTTCCG+AGG + chr4_4:18729825-18729844 Msa0672980:CDS 55.0%
ACCGAGTGGAGGTTCACTGT+TGG + chr4_4:18731110-18731129 Msa0672980:CDS 55.0%
CCCAACAGTGAACCTCCACT+CGG - chr4_4:18731114-18731133 None:intergenic 55.0%
CCGAGTGGAGGTTCACTGTT+GGG + chr4_4:18731111-18731130 Msa0672980:CDS 55.0%
TTGTTACCGAGTCCCCGAGA+TGG + chr4_4:18731273-18731292 Msa0672980:CDS 55.0%
TAGAAGCCATCTCGGGGACT+CGG - chr4_4:18731282-18731301 None:intergenic 55.0%
!! GGCTCTAAAGCGAATGGTGG+CGG + chr4_4:18731466-18731485 Msa0672980:CDS 55.0%
! CTCGGTTTGCCGGAGTCAAG+AGG + chr4_4:18731965-18731984 Msa0672980:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 18729697 18732339 18729697 ID=Msa0672980;Name=Msa0672980
chr4_4 mRNA 18729697 18732339 18729697 ID=Msa0672980-mRNA-1;Parent=Msa0672980;Name=Msa0672980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=99|1|1|1|0|0.5|2|294|508
chr4_4 exon 18729697 18729846 18729697 ID=Msa0672980-mRNA-1:exon:5407;Parent=Msa0672980-mRNA-1
chr4_4 exon 18730570 18732339 18730570 ID=Msa0672980-mRNA-1:exon:5408;Parent=Msa0672980-mRNA-1
chr4_4 five_prime_UTR 18729697 18729795 18729697 ID=Msa0672980-mRNA-1:five_prime_utr;Parent=Msa0672980-mRNA-1
chr4_4 CDS 18729796 18729846 18729796 ID=Msa0672980-mRNA-1:cds;Parent=Msa0672980-mRNA-1
chr4_4 CDS 18730570 18732045 18730570 ID=Msa0672980-mRNA-1:cds;Parent=Msa0672980-mRNA-1
chr4_4 three_prime_UTR 18732046 18732339 18732046 ID=Msa0672980-mRNA-1:three_prime_utr;Parent=Msa0672980-mRNA-1
Gene Sequence

>Msa0672980

ATGGCGGCTATAGAGGAGTTACCTTCTTCCATACCCCAAGCTTCTTCCGAGGAAAAAGTGATTCCTTCAACAGATGAAATGATGGAAAGGGGTTTAGGAAGATTTGGTTGGGTAGAATTTGTGCAATGCGTTCTTGTTTCATTCGCAATGTTCTTTGACGCACAACAATCGTTCATAACGATTTACACCGACGAATACCAAACATGGCATTGTACGAATCCGACCACATGTGCATCAGATTCTAACATCTGCAAAATTCCTAAGTCTTCATGGTCATGGGATGGACCAGCACACAAAACAGTGATATCTCAATGGAGTCTTGAATGTGCTAGTAGCTTTGTAACAGGTTTACCGCAATCTTCGTTCTTCATTGGTTGCCTTTTCGGTTCGTTTCTTCTAGCAACTTTAGCTGATACATCACTTGGTAGAAAGAACATGCTTGTTATGTCTTGTTTATCGATGTCTATAGTTTCAATTCTCATTGTTTTCTCTACCAATGTTTGGATTTATTCTGTTTTTAAATTCTTGATTGGCTTTTTGCGTTCGTCGATTGGAACTTGTGTTCTTGTTTTGCTAACTGAGAAAGTTAGTACCGAGTGGAGGTTCACTGTTGGGATTGTCGAATATTTCTGCTTCACATTAGGGTATGTGTCATTGCCTGGTATAGCTTATCTTAATAGATATAATTCGTGGAAATCGGTGTATATTTGGACATCGGTTCCTGCAATTATTTACTCAATCATTGCTTATATCTTTGTTACCGAGTCCCCGAGATGGCTTCTAATGCAAGGACGACATCAAGAAGCTATGGCAATGCTTAAAGGAGTTTCTTCTGTAGAGAACAGTGATGATATGATAGTAAGTTTAATAGAAGCCCCGGTGAATAAACAAAAGGCTTCGATTTTCCAGCTTTACTCGTCAATTGCAGAGTTGTTCGGGAGAAGTTGGGCTCTAAAGCGAATGGTGGCGGTAATGGTTCTTGGTATTGGAATTGGAATGGTTTATTTTGGAATGCCTTTAGCCGTTGGAAACTTAGGTTTTGACATTTATTTGGCTGTTGTGTTCAACGGTTTGATGGAAATACCGTCTTGTGTGGCTACTTATTTCTTGGAGAATCGCCAAAGAAAGCCATCGATTCTTGTATTCTCGGTAGCTAGTGGCATATGTTGTATAATGTGTGTTATTGTTGGATCGGGACAACAAGGAATTAAGGTCGGGTTAGCGATGACATCGTTTTTCAGTGCTTGCACAGCTTATAATGTGTTTCTCATTTACATTATTGAGCTGTTTCCAACAAGTGTGAGAAACACTACAACATCATTGGTGAGACAAGCTATTGTTTTTGGTAACATTTTCAGCCCCTTTTTGATATCTGCTGGGAGGAAAAATGACATTTTCTCATACGGCGTGTTTGGAGTTGTTATCATGTTGTCTTGTGTTACATTACTCGGTTTGCCGGAGTCAAGAGGATTAGCTCTTTCAGATACCATGGATCAACAAGAGAAGAAAGATGACATGTCAGTTTAA

Protein sequence

>Msa0672980

MAAIEELPSSIPQASSEEKVIPSTDEMMERGLGRFGWVEFVQCVLVSFAMFFDAQQSFITIYTDEYQTWHCTNPTTCASDSNICKIPKSSWSWDGPAHKTVISQWSLECASSFVTGLPQSSFFIGCLFGSFLLATLADTSLGRKNMLVMSCLSMSIVSILIVFSTNVWIYSVFKFLIGFLRSSIGTCVLVLLTEKVSTEWRFTVGIVEYFCFTLGYVSLPGIAYLNRYNSWKSVYIWTSVPAIIYSIIAYIFVTESPRWLLMQGRHQEAMAMLKGVSSVENSDDMIVSLIEAPVNKQKASIFQLYSSIAELFGRSWALKRMVAVMVLGIGIGMVYFGMPLAVGNLGFDIYLAVVFNGLMEIPSCVATYFLENRQRKPSILVFSVASGICCIMCVIVGSGQQGIKVGLAMTSFFSACTAYNVFLIYIIELFPTSVRNTTTSLVRQAIVFGNIFSPFLISAGRKNDIFSYGVFGVVIMLSCVTLLGLPESRGLALSDTMDQQEKKDDMSV*