Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0213880 | KEH38548.1 | 99.403 | 670 | 4 | 0 | 1 | 670 | 13 | 682 | 0.0 | 1390 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0213880 | sp|Q9SYM5|RHM1_ARATH | 88.077 | 671 | 76 | 2 | 1 | 669 | 1 | 669 | 0.0 | 1239 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0213880 | A0A072VAU0 | 99.403 | 670 | 4 | 0 | 1 | 670 | 13 | 682 | 0.0 | 1390 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0140880 | Msa0213880 | 0.805695 | 1.179157e-49 | -8.615850e-47 |
Msa0213880 | Msa0254260 | 0.870470 | 1.424491e-66 | -8.615850e-47 |
Msa0213880 | Msa0332390 | 0.862921 | 3.598296e-64 | -8.615850e-47 |
Msa0213880 | Msa0333610 | 0.814569 | 1.441246e-51 | -8.615850e-47 |
Msa0213880 | Msa0341740 | 0.804091 | 2.550611e-49 | -8.615850e-47 |
Msa0213880 | Msa0462450 | 0.803583 | 3.253381e-49 | -8.615850e-47 |
Msa0213880 | Msa0754560 | 0.807059 | 6.081921e-50 | -8.615850e-47 |
Msa0213880 | Msa0866040 | 0.822296 | 2.556119e-53 | -8.615850e-47 |
Msa0213880 | Msa0866130 | 0.853787 | 1.896622e-61 | -8.615850e-47 |
Msa0213880 | Msa1440900 | 0.804552 | 2.044684e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0213880 | MtrunA17_Chr2g0314601 | 99.403 | 670 | 4 | 0 | 1 | 670 | 1 | 670 | 0.0 | 1388 |
Msa0213880 | MtrunA17_Chr8g0359401 | 89.521 | 668 | 69 | 1 | 1 | 668 | 1 | 667 | 0.0 | 1264 |
Msa0213880 | MtrunA17_Chr1g0147841 | 74.925 | 666 | 155 | 2 | 4 | 669 | 2 | 655 | 0.0 | 1046 |
Msa0213880 | MtrunA17_Chr4g0057161 | 82.007 | 289 | 52 | 0 | 380 | 668 | 7 | 295 | 2.14e-174 | 498 |
Msa0213880 | MtrunA17_Chr3g0097081 | 61.780 | 191 | 42 | 2 | 85 | 274 | 1 | 161 | 9.56e-67 | 221 |
Msa0213880 | MtrunA17_Chr3g0097081 | 52.893 | 121 | 50 | 1 | 362 | 475 | 137 | 257 | 5.86e-32 | 125 |
Msa0213880 | MtrunA17_Chr2g0327981 | 30.573 | 314 | 189 | 10 | 9 | 312 | 40 | 334 | 5.86e-27 | 112 |
Msa0213880 | MtrunA17_Chr4g0031131 | 28.617 | 311 | 199 | 10 | 9 | 312 | 34 | 328 | 4.16e-26 | 110 |
Msa0213880 | MtrunA17_Chr4g0067461 | 27.619 | 315 | 195 | 11 | 7 | 312 | 111 | 401 | 1.96e-25 | 109 |
Msa0213880 | MtrunA17_Chr8g0380921 | 26.243 | 362 | 218 | 15 | 1 | 327 | 63 | 410 | 9.46e-25 | 107 |
Msa0213880 | MtrunA17_Chr2g0293521 | 25.978 | 358 | 224 | 13 | 1 | 327 | 63 | 410 | 2.94e-24 | 105 |
Msa0213880 | MtrunA17_Chr4g0073351 | 27.193 | 342 | 208 | 9 | 8 | 321 | 96 | 424 | 3.07e-22 | 100 |
Msa0213880 | MtrunA17_Chr4g0011281 | 26.822 | 343 | 208 | 8 | 8 | 321 | 102 | 430 | 2.09e-20 | 94.7 |
Msa0213880 | MtrunA17_Chr1g0195521 | 26.524 | 328 | 201 | 13 | 8 | 312 | 119 | 429 | 1.01e-19 | 92.4 |
Msa0213880 | MtrunA17_Chr4g0056941 | 28.274 | 336 | 212 | 10 | 7 | 320 | 93 | 421 | 1.75e-19 | 91.7 |
Msa0213880 | MtrunA17_Chr5g0398811 | 26.571 | 350 | 222 | 10 | 5 | 326 | 88 | 430 | 2.98e-19 | 90.9 |
Msa0213880 | MtrunA17_Chr7g0230291 | 26.608 | 342 | 210 | 8 | 8 | 321 | 83 | 411 | 4.06e-19 | 90.5 |
Msa0213880 | MtrunA17_Chr8g0388261 | 27.066 | 351 | 217 | 13 | 7 | 328 | 4 | 344 | 1.47e-18 | 87.8 |
Msa0213880 | MtrunA17_Chr4g0076751 | 24.217 | 351 | 225 | 14 | 7 | 327 | 25 | 364 | 1.96e-18 | 87.8 |
Msa0213880 | MtrunA17_Chr3g0121661 | 26.647 | 334 | 216 | 10 | 9 | 320 | 101 | 427 | 3.25e-17 | 84.7 |
Msa0213880 | MtrunA17_Chr3g0136511 | 29.796 | 245 | 147 | 9 | 1 | 234 | 1 | 231 | 1.09e-14 | 77.4 |
Msa0213880 | MtrunA17_Chr1g0208111 | 24.377 | 361 | 218 | 14 | 6 | 318 | 18 | 371 | 1.26e-14 | 76.3 |
Msa0213880 | MtrunA17_Chr1g0182091 | 28.372 | 215 | 140 | 7 | 105 | 312 | 4 | 211 | 2.63e-14 | 73.2 |
Msa0213880 | MtrunA17_Chr3g0133771 | 24.280 | 243 | 169 | 6 | 7 | 248 | 2 | 230 | 1.63e-12 | 69.3 |
Msa0213880 | MtrunA17_Chr4g0027491 | 23.546 | 361 | 221 | 13 | 6 | 318 | 18 | 371 | 2.74e-12 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0213880 | AT1G78570.1 | 88.077 | 671 | 76 | 2 | 1 | 669 | 1 | 669 | 0.0 | 1239 |
Msa0213880 | AT3G14790.2 | 85.351 | 669 | 93 | 2 | 1 | 669 | 4 | 667 | 0.0 | 1170 |
Msa0213880 | AT3G14790.1 | 85.351 | 669 | 93 | 2 | 1 | 669 | 1 | 664 | 0.0 | 1170 |
Msa0213880 | AT1G53500.1 | 85.479 | 668 | 93 | 3 | 2 | 669 | 4 | 667 | 0.0 | 1161 |
Msa0213880 | AT1G63000.1 | 83.039 | 283 | 48 | 0 | 387 | 669 | 15 | 297 | 1.56e-177 | 507 |
Msa0213880 | AT2G28760.1 | 30.032 | 313 | 192 | 10 | 9 | 312 | 33 | 327 | 4.25e-28 | 116 |
Msa0213880 | AT2G28760.2 | 30.032 | 313 | 192 | 10 | 9 | 312 | 33 | 327 | 4.25e-28 | 116 |
Msa0213880 | AT2G28760.3 | 30.032 | 313 | 192 | 10 | 9 | 312 | 33 | 327 | 4.25e-28 | 116 |
Msa0213880 | AT4G20460.1 | 27.714 | 350 | 212 | 12 | 8 | 327 | 71 | 409 | 7.08e-28 | 117 |
Msa0213880 | AT2G28760.4 | 30.032 | 313 | 192 | 10 | 9 | 312 | 64 | 358 | 1.02e-27 | 115 |
Msa0213880 | AT5G59290.4 | 29.712 | 313 | 193 | 10 | 9 | 312 | 3 | 297 | 1.38e-27 | 114 |
Msa0213880 | AT5G59290.1 | 29.712 | 313 | 193 | 10 | 9 | 312 | 32 | 326 | 1.94e-27 | 114 |
Msa0213880 | AT5G59290.3 | 29.712 | 313 | 193 | 10 | 9 | 312 | 25 | 319 | 2.23e-27 | 114 |
Msa0213880 | AT5G59290.2 | 29.712 | 313 | 193 | 10 | 9 | 312 | 47 | 341 | 3.14e-27 | 114 |
Msa0213880 | AT3G46440.2 | 29.393 | 313 | 194 | 10 | 9 | 312 | 31 | 325 | 4.67e-27 | 113 |
Msa0213880 | AT3G46440.1 | 29.393 | 313 | 194 | 10 | 9 | 312 | 31 | 325 | 4.67e-27 | 113 |
Msa0213880 | AT3G53520.1 | 27.187 | 320 | 209 | 10 | 9 | 321 | 122 | 424 | 8.93e-25 | 108 |
Msa0213880 | AT3G62830.2 | 27.157 | 313 | 200 | 10 | 9 | 312 | 121 | 414 | 1.32e-24 | 107 |
Msa0213880 | AT3G62830.1 | 27.157 | 313 | 200 | 10 | 9 | 312 | 121 | 414 | 1.32e-24 | 107 |
Msa0213880 | AT2G47650.1 | 26.837 | 313 | 201 | 10 | 9 | 312 | 123 | 416 | 5.34e-24 | 105 |
Msa0213880 | AT5G44480.3 | 26.989 | 352 | 210 | 15 | 8 | 326 | 72 | 409 | 1.23e-23 | 104 |
Msa0213880 | AT5G44480.4 | 26.989 | 352 | 210 | 15 | 8 | 326 | 72 | 409 | 1.23e-23 | 104 |
Msa0213880 | AT5G44480.2 | 26.989 | 352 | 210 | 15 | 8 | 326 | 72 | 409 | 1.23e-23 | 104 |
Msa0213880 | AT5G44480.1 | 26.989 | 352 | 210 | 15 | 8 | 326 | 96 | 433 | 1.46e-23 | 104 |
Msa0213880 | AT2G47650.2 | 26.498 | 317 | 203 | 10 | 9 | 312 | 123 | 422 | 7.41e-23 | 102 |
Msa0213880 | AT1G30620.3 | 27.809 | 356 | 214 | 15 | 4 | 327 | 65 | 409 | 1.37e-22 | 101 |
Msa0213880 | AT3G53520.2 | 26.875 | 320 | 208 | 11 | 9 | 321 | 122 | 422 | 1.46e-22 | 101 |
Msa0213880 | AT1G30620.1 | 27.809 | 356 | 214 | 15 | 4 | 327 | 66 | 410 | 1.48e-22 | 101 |
Msa0213880 | AT1G30620.6 | 27.809 | 356 | 214 | 15 | 4 | 327 | 66 | 410 | 1.48e-22 | 101 |
Msa0213880 | AT1G30620.4 | 27.809 | 356 | 214 | 15 | 4 | 327 | 66 | 410 | 1.48e-22 | 101 |
Msa0213880 | AT1G30620.2 | 27.809 | 356 | 214 | 15 | 4 | 327 | 66 | 410 | 1.48e-22 | 101 |
Msa0213880 | AT3G53520.4 | 25.948 | 343 | 207 | 11 | 9 | 321 | 122 | 447 | 8.46e-22 | 99.4 |
Msa0213880 | AT1G63180.1 | 26.331 | 357 | 222 | 14 | 1 | 327 | 1 | 346 | 1.03e-20 | 94.7 |
Msa0213880 | AT4G00110.1 | 26.844 | 339 | 219 | 8 | 8 | 324 | 92 | 423 | 2.23e-20 | 94.7 |
Msa0213880 | AT2G45310.1 | 26.866 | 335 | 216 | 9 | 9 | 321 | 99 | 426 | 9.79e-20 | 92.8 |
Msa0213880 | AT1G02000.1 | 25.893 | 336 | 220 | 9 | 8 | 321 | 93 | 421 | 7.98e-19 | 90.1 |
Msa0213880 | AT4G30440.1 | 30.901 | 233 | 151 | 6 | 8 | 234 | 89 | 317 | 2.48e-18 | 88.6 |
Msa0213880 | AT1G64440.1 | 27.920 | 351 | 210 | 15 | 8 | 327 | 4 | 342 | 5.59e-18 | 86.7 |
Msa0213880 | AT1G30620.5 | 30.256 | 195 | 121 | 6 | 4 | 191 | 66 | 252 | 1.33e-17 | 84.3 |
Msa0213880 | AT3G53520.3 | 27.897 | 233 | 148 | 7 | 8 | 234 | 121 | 339 | 2.25e-17 | 84.7 |
Msa0213880 | AT4G23920.1 | 26.163 | 344 | 219 | 12 | 7 | 323 | 3 | 338 | 3.89e-16 | 80.9 |
Msa0213880 | AT1G63180.2 | 26.689 | 296 | 181 | 11 | 1 | 267 | 1 | 289 | 4.45e-16 | 80.1 |
Msa0213880 | AT3G23820.1 | 26.567 | 335 | 217 | 10 | 8 | 320 | 113 | 440 | 1.53e-15 | 80.1 |
Msa0213880 | AT1G47290.1 | 26.757 | 370 | 201 | 15 | 3 | 319 | 6 | 358 | 6.57e-15 | 77.4 |
Msa0213880 | AT4G12250.1 | 26.100 | 341 | 223 | 8 | 3 | 321 | 92 | 425 | 1.54e-14 | 77.0 |
Msa0213880 | AT1G47290.2 | 26.757 | 370 | 201 | 15 | 3 | 319 | 6 | 358 | 1.76e-14 | 76.6 |
Msa0213880 | AT2G26260.1 | 26.506 | 249 | 148 | 8 | 2 | 234 | 5 | 234 | 1.76e-13 | 73.9 |
Msa0213880 | AT1G73250.1 | 27.473 | 182 | 120 | 5 | 151 | 322 | 140 | 319 | 8.06e-13 | 70.5 |
Find 173 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGGAATTCATTCTTCAATT+TGG | 0.161081 | 2_1:+57614989 | Msa0213870:intron |
CGATCAAAAGTTGAAGGTTT+TGG | 0.178673 | 2_1:-57616212 | Msa0213880:CDS |
AGGTTCAGGCATTGGGTTTA+AGG | 0.187878 | 2_1:-57615600 | Msa0213880:CDS |
GCTTACCATTGCCTTGGTTT+TGG | 0.211812 | 2_1:+57615541 | Msa0213870:intron |
TCTTTGATGGAAAGCAATTC+TGG | 0.218557 | 2_1:+57614969 | Msa0213870:intron |
TTCACCAAGAACAACATTTA+TGG | 0.223050 | 2_1:-57616784 | Msa0213880:CDS |
TAATTGATAAGTATTATAAT+TGG | 0.230179 | 2_1:-57614765 | Msa0213880:three_prime_UTR |
GTTGGACATGTTTACAATAT+TGG | 0.241068 | 2_1:-57616361 | Msa0213880:CDS |
CCCTTCACAAACTTGAAGTT+TGG | 0.241790 | 2_1:+57616922 | Msa0213870:intron |
TTTGCCATCTCAATTGAAAT+AGG | 0.250438 | 2_1:+57615185 | Msa0213870:intron |
ATTGCCAAGAGGATAAATTT+TGG | 0.258449 | 2_1:+57616490 | Msa0213870:intron |
TAGAAAGAACCGGCGAAATT+AGG | 0.282017 | 2_1:+57615566 | Msa0213870:intron |
AAGAAGTGAAGAGAGAAAAT+AGG | 0.287535 | 2_1:+57618259 | Msa0213870:intron |
AACCCAATGCCTGAACCTTC+TGG | 0.294957 | 2_1:+57615605 | Msa0213870:intron |
CTTGATAAGTGATTCTTTGA+TGG | 0.295568 | 2_1:+57614956 | Msa0213870:intron |
CAAGGGATTCCATATGAATA+TGG | 0.304468 | 2_1:-57615872 | Msa0213880:CDS |
AATTGATAAGTATTATAATT+GGG | 0.306164 | 2_1:-57614764 | Msa0213880:three_prime_UTR |
TCCAAACAGCATGACTGTTT+TGG | 0.309945 | 2_1:-57615219 | Msa0213880:CDS |
CCTCTCAAGTTCTTGATCTA+TGG | 0.311827 | 2_1:-57615941 | Msa0213880:CDS |
GGTATATCAACAATCCTAAT+TGG | 0.322317 | 2_1:-57616138 | Msa0213880:CDS |
ACTCATGTCGACAACTCTTT+TGG | 0.326250 | 2_1:-57616820 | Msa0213880:CDS |
TGAAGTTCCAGATACCTCTT+AGG | 0.329274 | 2_1:+57615156 | Msa0213870:intron |
ATGGCGTATGGTAGGTCTTA+TGG | 0.335557 | 2_1:-57616580 | Msa0213880:CDS |
TTGCTTAGGTCAGATGAAAT+TGG | 0.338530 | 2_1:+57615293 | Msa0213870:intron |
TTAGAAGCTTGCAAGGTAAC+TGG | 0.349049 | 2_1:-57616748 | Msa0213880:CDS |
TTCTTCCCATGTTGTTCTCT+CGG | 0.350950 | 2_1:+57616183 | Msa0213870:intron |
TTTCCACGTGTTGTGATTAC+CGG | 0.356238 | 2_1:+57616553 | Msa0213870:intron |
AAGTTAGCCCACTTGAAGTT+TGG | 0.358387 | 2_1:+57615074 | Msa0213870:intron |
ATCCAGAAGGTTCAGGCATT+GGG | 0.362912 | 2_1:-57615607 | Msa0213880:CDS |
TGTGAGTTATGTTTGTGTAT+TGG | 0.363789 | 2_1:-57614591 | Msa0213880:three_prime_UTR |
CTCACATCGCCCCACCAATT+AGG | 0.372048 | 2_1:+57616124 | Msa0213870:intron |
AGTACCATAAATGTTGTTCT+TGG | 0.373878 | 2_1:+57616780 | Msa0213870:intron |
ACACGTGGAAACAATGTCTA+TGG | 0.379199 | 2_1:-57616541 | Msa0213880:CDS |
GGAAAAGTTCTTCCGATTCA+TGG | 0.380568 | 2_1:-57616463 | Msa0213880:CDS |
TCCAAAACAGTCATGCTGTT+TGG | 0.382722 | 2_1:+57615218 | Msa0213870:intron |
TTTATTGTAACGTGAAATCT+TGG | 0.382737 | 2_1:+57615253 | Msa0213870:intron |
TTCTTGATCTATGGAAGAAC+TGG | 0.390031 | 2_1:-57615932 | Msa0213880:CDS |
AGAGGAACCTAAGAGGTATC+TGG | 0.395333 | 2_1:-57615163 | Msa0213880:CDS |
TTGTGTTTAGAAGATAATAT+TGG | 0.401763 | 2_1:-57614788 | Msa0213880:three_prime_UTR |
CCGTACTCTGCAACAAAAGC+TGG | 0.402137 | 2_1:-57616619 | Msa0213880:CDS |
AATCTACGGAGATTTAGATT+TGG | 0.404375 | 2_1:+57618294 | Msa0213870:intron |
ATCCTCATTACCGGGGCGGC+TGG | 0.406209 | 2_1:-57617066 | Msa0213880:CDS |
CTTTGATGGAAAGCAATTCT+GGG | 0.407319 | 2_1:+57614970 | Msa0213870:intron |
ATGTTGCCAACCGGCTTATC+CGG | 0.407727 | 2_1:-57617029 | Msa0213880:CDS |
GGTTGGATCGGTGGTTTGCT+TGG | 0.414855 | 2_1:-57615911 | Msa0213880:CDS |
GATTCCAAAATTTATCCTCT+TGG | 0.417223 | 2_1:-57616494 | Msa0213880:CDS |
GTTGGATCGGTGGTTTGCTT+GGG | 0.417488 | 2_1:-57615910 | Msa0213880:CDS |
ACAGATGAGGATGCGGTTGT+TGG | 0.419126 | 2_1:-57616676 | Msa0213880:CDS |
TAAACACAACAATAACAGTA+TGG | 0.420329 | 2_1:+57614802 | Msa0213870:intron |
TCTTGACGATCAAAAGTTGA+AGG | 0.421916 | 2_1:-57616218 | Msa0213880:CDS |
TAAGTATTATAATTGGGGTT+AGG | 0.426960 | 2_1:-57614758 | Msa0213880:three_prime_UTR |
GTAAGCACTGATGAGGTCTA+TGG | 0.433555 | 2_1:-57616703 | Msa0213880:CDS |
AAGTTTGGAGATGATCTTGA+AGG | 0.433792 | 2_1:+57616937 | Msa0213870:intron |
CGGGAAGACCTAACGTTGAT+TGG | 0.437127 | 2_1:-57615763 | Msa0213880:CDS |
CATCCAGAAGGTTCAGGCAT+TGG | 0.437868 | 2_1:-57615608 | Msa0213880:CDS |
GAAGAGCCAATGCTCTTTGT+AGG | 0.440799 | 2_1:+57615974 | Msa0213870:intron |
TTGCGTCTCATGTTGCCAAC+CGG | 0.441564 | 2_1:-57617038 | Msa0213880:CDS |
TGGTAGGTCTTATGGATTGC+CGG | 0.441733 | 2_1:-57616572 | Msa0213880:CDS |
ATGACAATGTATGCACTCTC+AGG | 0.444077 | 2_1:-57615325 | Msa0213880:CDS |
ATTCCATATGAATATGGAAA+AGG | 0.444160 | 2_1:-57615866 | Msa0213880:CDS |
ATTATAATTGGGGTTAGGTA+TGG | 0.447743 | 2_1:-57614753 | Msa0213880:three_prime_UTR |
TAGCTAGCTTACCATTGCCT+TGG | 0.452476 | 2_1:+57615535 | Msa0213870:intron |
CGTTGTTGGGACTTTAACAT+TGG | 0.453861 | 2_1:-57615705 | Msa0213880:CDS |
GAAGCTCATCCAGAAGGTTC+AGG | 0.456647 | 2_1:-57615614 | Msa0213880:CDS |
TTCAATGCAGCAGGCGTGAC+GGG | 0.457186 | 2_1:-57615782 | Msa0213880:CDS |
TTTGAAGTTATCCTTCATAA+GGG | 0.460918 | 2_1:-57616388 | Msa0213880:CDS |
CCATCCGTGTCAACGTTGTT+GGG | 0.465475 | 2_1:-57615718 | Msa0213880:CDS |
ACCATCCGTGTCAACGTTGT+TGG | 0.468379 | 2_1:-57615719 | Msa0213880:CDS |
TCGTTGTGGCTCACGGCGCC+AGG | 0.468437 | 2_1:+57615128 | Msa0213870:intron |
AAGTATCTCTGATCATTAAA+CGG | 0.469948 | 2_1:+57616241 | Msa0213870:intron |
ATCTGGAACTTCACAAATCC+TGG | 0.470303 | 2_1:-57615146 | Msa0213880:CDS |
CGCAATGAATCCAGCCGCCC+CGG | 0.478937 | 2_1:+57617056 | Msa0213870:intron |
TTACAATATTGGAACTAAGA+AGG | 0.484035 | 2_1:-57616350 | Msa0213880:CDS |
CGTACTCTGCAACAAAAGCT+GGG | 0.487722 | 2_1:-57616618 | Msa0213880:CDS |
GTTGCAGAGTACGGATTTGT+TGG | 0.489137 | 2_1:+57616628 | Msa0213870:intron |
GAGATGATCTTGAAGGAATG+AGG | 0.489742 | 2_1:+57616944 | Msa0213870:intron |
ATTGATAAGTATTATAATTG+GGG | 0.495923 | 2_1:-57614763 | Msa0213880:three_prime_UTR |
ACTTACAAATTGGTACGAAA+AGG | 0.496883 | 2_1:+57618234 | Msa0213870:intron |
TCTTCCTATTTCAATTGAGA+TGG | 0.498900 | 2_1:-57615189 | Msa0213880:CDS |
TCTTGCAGCAACTATCACTT+TGG | 0.499126 | 2_1:+57615034 | Msa0213870:intron |
ATCCTTCATAAGGGAGAGGT+TGG | 0.502469 | 2_1:-57616379 | Msa0213880:CDS |
AGACCTCATCAGTGCTTACA+TGG | 0.502767 | 2_1:+57616707 | Msa0213870:intron |
TTCCATATGAATATGGAAAA+GGG | 0.506901 | 2_1:-57615865 | Msa0213880:CDS |
CAAGCTCTTCTCAATTGATC+CGG | 0.510856 | 2_1:-57616293 | Msa0213880:CDS |
TAGCATAGTTCATCATCAAA+AGG | 0.516883 | 2_1:+57615660 | Msa0213870:intron |
GTTCTTCCGATTCATGGTGA+TGG | 0.517259 | 2_1:-57616457 | Msa0213880:CDS |
TGCAAGAAGCAACAATGAAA+TGG | 0.518316 | 2_1:-57615018 | Msa0213880:CDS |
TGAAATTGCGTGGATTGCTT+AGG | 0.528340 | 2_1:+57615279 | Msa0213870:intron |
TCCAAACTTCAAGTTTGTGA+AGG | 0.531089 | 2_1:-57616923 | Msa0213880:CDS |
TTTATCCTCTTGGCAATGCA+AGG | 0.531302 | 2_1:-57616484 | Msa0213880:CDS |
TTGATGATGAACTATGCTAC+CGG | 0.533136 | 2_1:-57615656 | Msa0213880:CDS |
GTTACCTTGTGAGCTTGCTA+CGG | 0.534317 | 2_1:-57614676 | Msa0213880:three_prime_UTR |
GGGAAATTGTGTGAGAAACA+AGG | 0.534485 | 2_1:-57615890 | Msa0213880:CDS |
TTTGAACCATCACCATGAAT+CGG | 0.534712 | 2_1:+57616451 | Msa0213870:intron |
TATCAACAATCCTAATTGGT+GGG | 0.540325 | 2_1:-57616134 | Msa0213880:CDS |
GTCCAACCTCTCCCTTATGA+AGG | 0.542052 | 2_1:+57616377 | Msa0213870:intron |
ATCCAGCCGCCCCGGTAATG+AGG | 0.542170 | 2_1:+57617064 | Msa0213870:intron |
TGATCTATGGAAGAACTGGT+TGG | 0.542351 | 2_1:-57615928 | Msa0213880:CDS |
ATTGTTGATATACCAGTCCA+TGG | 0.546234 | 2_1:+57616147 | Msa0213870:intron |
GAGAGAACAACATGGGAAGA+AGG | 0.546603 | 2_1:-57616181 | Msa0213880:CDS |
CCAAACTTCAAGTTTGTGAA+GGG | 0.547634 | 2_1:-57616922 | Msa0213880:CDS |
GGAAGAACTGGTTGGATCGG+TGG | 0.548201 | 2_1:-57615920 | Msa0213880:CDS |
CCGAAAATGTTAATGATGCC+TGG | 0.549298 | 2_1:-57616082 | Msa0213880:CDS |
GTTAATGATGCCTGGTGGGA+TGG | 0.550016 | 2_1:-57616074 | Msa0213880:CDS |
CGGGATAGTTCCGGATAAGC+CGG | 0.551283 | 2_1:+57617019 | Msa0213870:intron |
GATTCACACCAATCAACGTT+AGG | 0.551310 | 2_1:+57615755 | Msa0213870:intron |
GGAGCTGAAATCGAAATCTA+CGG | 0.555069 | 2_1:+57618280 | Msa0213870:intron |
GAAATGCTCGTCATGGCGTA+TGG | 0.556137 | 2_1:-57616592 | Msa0213880:CDS |
GGATGGAGAGACATTTCAAT+GGG | 0.556466 | 2_1:-57616057 | Msa0213880:CDS |
TTCTTTCTATTCCAAAACCA+AGG | 0.556902 | 2_1:-57615552 | Msa0213880:CDS |
TGCTCGTCATGGCGTATGGT+AGG | 0.557344 | 2_1:-57616588 | Msa0213880:CDS |
CCCAACAACGTTGACACGGA+TGG | 0.559674 | 2_1:+57615718 | Msa0213870:intron |
TTTCAATGCAGCAGGCGTGA+CGG | 0.562169 | 2_1:-57615783 | Msa0213880:CDS |
AGTTATCCTTCATAAGGGAG+AGG | 0.562307 | 2_1:-57616383 | Msa0213880:CDS |
GGAAATTGTGTGAGAAACAA+GGG | 0.564756 | 2_1:-57615889 | Msa0213880:CDS |
CGATAGACTCAGTGATGAGA+AGG | 0.564861 | 2_1:+57616869 | Msa0213870:intron |
CTATTCCAAAACCAAGGCAA+TGG | 0.566752 | 2_1:-57615546 | Msa0213880:intron |
AAATGTCTCTCCATCCCACC+AGG | 0.569236 | 2_1:+57616064 | Msa0213870:intron |
GGGATGGAGAGACATTTCAA+TGG | 0.570949 | 2_1:-57616058 | Msa0213880:CDS |
TCATGTCTTCAATATCAGAA+TGG | 0.573520 | 2_1:+57614644 | Msa0213870:intron |
GAAGACACTCCTAATTTCGC+CGG | 0.574480 | 2_1:-57615575 | Msa0213880:CDS |
ACATTGATCCAAACTTCAAG+TGG | 0.579567 | 2_1:-57615082 | Msa0213880:CDS |
CTCAAGTACTAATACTCGAA+TGG | 0.579731 | 2_1:-57616005 | Msa0213880:CDS |
TGTCTTATTAGAAGCTTGCA+AGG | 0.580370 | 2_1:-57616755 | Msa0213880:CDS |
ATATCAACAATCCTAATTGG+TGG | 0.585366 | 2_1:-57616135 | Msa0213880:CDS |
TGGAGAGACAGATGAGGATG+CGG | 0.589535 | 2_1:-57616683 | Msa0213880:CDS |
TGGGGCTGAAATGCTCGTCA+TGG | 0.592576 | 2_1:-57616599 | Msa0213880:CDS |
TATGGAAGAACTGGTTGGAT+CGG | 0.593876 | 2_1:-57615923 | Msa0213880:CDS |
GAGCCAATGCTCTTTGTAGG+TGG | 0.595767 | 2_1:+57615977 | Msa0213870:intron |
GTTCCACCTACAAAGAGCAT+TGG | 0.596551 | 2_1:-57615980 | Msa0213880:CDS |
TGAGGATCGTTCATCACTCG+TGG | 0.597692 | 2_1:-57615837 | Msa0213880:CDS |
CCATAGATCAAGAACTTGAG+AGG | 0.598084 | 2_1:+57615941 | Msa0213870:intron |
ATCAACAATCCTAATTGGTG+GGG | 0.599048 | 2_1:-57616133 | Msa0213880:CDS |
GCTTGAAGAAAACCATGGAC+TGG | 0.603416 | 2_1:-57616159 | Msa0213880:CDS |
GTATTAGTACTTGAGACAAA+CGG | 0.603642 | 2_1:+57616013 | Msa0213870:intron |
GAGAATCTCGTTGTGGCTCA+CGG | 0.604501 | 2_1:+57615121 | Msa0213870:intron |
GCTGCATTGAAAATATGAGT+TGG | 0.607206 | 2_1:+57615794 | Msa0213870:intron |
GTTATCTAGCACTTATGCCG+TGG | 0.611201 | 2_1:-57614514 | None:intergenic |
ATCATACTCGAATATGCACC+CGG | 0.611680 | 2_1:+57615637 | Msa0213870:intron |
AACAGTAATCGAGTTTGTCG+AGG | 0.615310 | 2_1:+57616980 | Msa0213870:intron |
TGATGATGAACTATGCTACC+GGG | 0.618950 | 2_1:-57615655 | Msa0213880:CDS |
ATGGCAAAGAGGAACCTAAG+AGG | 0.622901 | 2_1:-57615170 | Msa0213880:CDS |
TATGATGAAGCTCATCCAGA+AGG | 0.624291 | 2_1:-57615620 | Msa0213880:CDS |
ATATTGGAACTAAGAAGGAA+AGG | 0.626669 | 2_1:-57616345 | Msa0213880:CDS |
TTTCAATTGAGATGGCAAAG+AGG | 0.627252 | 2_1:-57615181 | Msa0213880:CDS |
TTTGTATTGTGAAGATGTTG+CGG | 0.630976 | 2_1:-57616416 | Msa0213880:CDS |
CATCCATGTAAGCACTGATG+AGG | 0.632531 | 2_1:-57616710 | Msa0213880:CDS |
AAGTCCCAACAACGTTGACA+CGG | 0.632986 | 2_1:+57615714 | Msa0213870:intron |
ATAGTTCCGGATAAGCCGGT+TGG | 0.636641 | 2_1:+57617023 | Msa0213870:intron |
AATTGGTGGGGCGATGTGAG+TGG | 0.640742 | 2_1:-57616121 | Msa0213880:CDS |
ATCTTGGTGATGAAATTGCG+TGG | 0.642464 | 2_1:+57615269 | Msa0213870:intron |
ATATGGAAAAGGGCGTCTTG+AGG | 0.643401 | 2_1:-57615855 | Msa0213880:CDS |
TGATGAGAAGGTAGTTGACA+AGG | 0.649249 | 2_1:+57616881 | Msa0213870:intron |
AGAAGGCTTGAAGAAAACCA+TGG | 0.651189 | 2_1:-57616164 | Msa0213880:CDS |
TGACAATGTATGCACTCTCA+GGG | 0.651558 | 2_1:-57615324 | Msa0213880:CDS |
TTAACCGTAGCAAGCTCACA+AGG | 0.651715 | 2_1:+57614672 | Msa0213870:intron |
GGTCTATGGAGAGACAGATG+AGG | 0.654888 | 2_1:-57616689 | Msa0213880:CDS |
GAAGAGCTTGCATATATCAG+TGG | 0.655262 | 2_1:+57616306 | Msa0213870:intron |
CATTGATCCAAACTTCAAGT+GGG | 0.662099 | 2_1:-57615081 | Msa0213880:CDS |
TTGCCGGTAATCACAACACG+TGG | 0.662580 | 2_1:-57616556 | Msa0213880:CDS |
TAGATCAAGAACTTGAGAGG+AGG | 0.663040 | 2_1:+57615944 | Msa0213870:intron |
ACATCTCGAGAATCTCGTTG+TGG | 0.664572 | 2_1:+57615114 | Msa0213870:intron |
AAGTACTAATACTCGAATGG+TGG | 0.665787 | 2_1:-57616002 | Msa0213880:CDS |
AAATGTTAATGATGCCTGGT+GGG | 0.666092 | 2_1:-57616078 | Msa0213880:CDS |
GTACTCTGCAACAAAAGCTG+GGG | 0.681769 | 2_1:-57616617 | Msa0213880:CDS |
AAACATCCTCATTACCGGGG+CGG | 0.681852 | 2_1:-57617070 | Msa0213880:CDS |
TTGGTCCGAGAGAACAACAT+GGG | 0.688575 | 2_1:-57616188 | Msa0213880:CDS |
GAAGTAGCTGAGAAGCCTCG+TGG | 0.688718 | 2_1:+57616650 | Msa0213870:intron |
ATGGTGATGGTTCAAATGTG+AGG | 0.706627 | 2_1:-57616444 | Msa0213880:CDS |
GTTGGTCCGAGAGAACAACA+TGG | 0.719943 | 2_1:-57616189 | Msa0213880:CDS |
TGCGGTTGTTGGAAACCACG+AGG | 0.732893 | 2_1:-57616665 | Msa0213880:CDS |
AAAATGTTAATGATGCCTGG+TGG | 0.736377 | 2_1:-57616079 | Msa0213880:CDS |
GTATTGTGAAGATGTTGCGG+AGG | 0.741886 | 2_1:-57616413 | Msa0213880:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTGATAAGTATTATAAT+TGG | - | chr2_1:57618089-57618108 | Msa0213880:intron | 10.0% |
!! | AATTGATAAGTATTATAATT+GGG | - | chr2_1:57618090-57618109 | Msa0213880:intron | 10.0% |
!! | GAAAAAAAAAACTTACAAAT+TGG | + | chr2_1:57614633-57614652 | Msa0213870:intron | 15.0% |
!! | TCGATTTCAAAAAAAAAAAA+AGG | + | chr2_1:57617384-57617403 | Msa0213870:intron | 15.0% |
!!! | TTTTTTTTTTTTTGAAATCG+AGG | - | chr2_1:57617383-57617402 | Msa0213880:intron | 15.0% |
!! | ATTCATAATCATAATGAAAA+TGG | + | chr2_1:57617453-57617472 | Msa0213870:intron | 15.0% |
!! | ATTGATAAGTATTATAATTG+GGG | - | chr2_1:57618091-57618110 | Msa0213880:intron | 15.0% |
!!! | ACTAGATTTTTATTTAAATG+AGG | + | chr2_1:57618320-57618339 | Msa0213870:intron | 15.0% |
!!! | TTGTTTTTACTGAATTTTAG+TGG | - | chr2_1:57615053-57615072 | Msa0213880:CDS | 20.0% |
!!! | ATTGATATTTTGACTTGTTA+AGG | - | chr2_1:57615118-57615137 | Msa0213880:CDS | 20.0% |
!! | ACATTCAATTTCTATACTAA+AGG | + | chr2_1:57615586-57615605 | Msa0213870:intron | 20.0% |
!! | ACAGAAACTAAAATAAAACA+TGG | + | chr2_1:57615648-57615667 | Msa0213870:intron | 20.0% |
!!! | TTTAGTTTCTGTGATTATTT+AGG | - | chr2_1:57615656-57615675 | Msa0213880:CDS | 20.0% |
!!! | ATTTTGATTATATTTGTCTG+TGG | - | chr2_1:57615688-57615707 | Msa0213880:CDS | 20.0% |
!!! | ATTATTTTTTTTGCAGAAGT+TGG | - | chr2_1:57615737-57615756 | Msa0213880:CDS | 20.0% |
!! | AAAAAAAAAAGGAATCAGAA+TGG | + | chr2_1:57617373-57617392 | Msa0213870:intron | 20.0% |
!! | TTGTGTTTAGAAGATAATAT+TGG | - | chr2_1:57618066-57618085 | Msa0213880:intron | 20.0% |
!!! | AATGAGTGTTTTTTATGATC+TGG | - | chr2_1:57614759-57614778 | Msa0213880:three_prime_UTR | 25.0% |
!!! | ATGAGTGTTTTTTATGATCT+GGG | - | chr2_1:57614760-57614779 | Msa0213880:three_prime_UTR | 25.0% |
! | TTTCATCATAAACAATCACA+TGG | + | chr2_1:57614848-57614867 | Msa0213870:intron | 25.0% |
!!! | GATGTGTGTTTTTATTGTTT+AGG | - | chr2_1:57614985-57615004 | Msa0213880:CDS | 25.0% |
!!! | TTTTACTGAATTTTAGTGGT+TGG | - | chr2_1:57615057-57615076 | Msa0213880:CDS | 25.0% |
!!! | ATTTTGACTTGTTAAGGAAA+TGG | - | chr2_1:57615124-57615143 | Msa0213880:CDS | 25.0% |
!! | TCAAGAAAATGTGTTACTAT+AGG | - | chr2_1:57615148-57615167 | Msa0213880:CDS | 25.0% |
! | GATCTGTATCTTAAGATAAA+TGG | + | chr2_1:57615237-57615256 | Msa0213870:intron | 25.0% |
! | ATAGTAAACACAGTAAGTTT+AGG | + | chr2_1:57615327-57615346 | Msa0213870:intron | 25.0% |
! | ATAAGAAGTTAACAAGATCA+TGG | + | chr2_1:57615548-57615567 | Msa0213870:intron | 25.0% |
!!! | ACTAAAGGTAAATTGACTTT+TGG | + | chr2_1:57615571-57615590 | Msa0213870:intron | 25.0% |
!! | TTCTGTGATTATTTAGGATT+AGG | - | chr2_1:57615662-57615681 | Msa0213880:CDS | 25.0% |
!!! | AATTTTGGAATCAACTTTTC+AGG | + | chr2_1:57616352-57616371 | Msa0213870:intron | 25.0% |
!!! | TTTTGAAGTTATCCTTCATA+AGG | - | chr2_1:57616465-57616484 | Msa0213880:CDS | 25.0% |
!! | TTTGAAGTTATCCTTCATAA+GGG | - | chr2_1:57616466-57616485 | Msa0213880:CDS | 25.0% |
! | TTACAATATTGGAACTAAGA+AGG | - | chr2_1:57616504-57616523 | Msa0213880:CDS | 25.0% |
! | AAGTATCTCTGATCATTAAA+CGG | + | chr2_1:57616616-57616635 | Msa0213870:intron | 25.0% |
! | ATTCCATATGAATATGGAAA+AGG | - | chr2_1:57616988-57617007 | Msa0213880:CDS | 25.0% |
! | TTCCATATGAATATGGAAAA+GGG | - | chr2_1:57616989-57617008 | Msa0213880:CDS | 25.0% |
! | TTTATTGTAACGTGAAATCT+TGG | + | chr2_1:57617604-57617623 | Msa0213870:intron | 25.0% |
! | TAAACACAACAATAACAGTA+TGG | + | chr2_1:57618055-57618074 | Msa0213870:intron | 25.0% |
! | TAAGTATTATAATTGGGGTT+AGG | - | chr2_1:57618096-57618115 | Msa0213880:intron | 25.0% |
AATCTACGGAGATTTAGATT+TGG | + | chr2_1:57614563-57614582 | Msa0213870:intron | 30.0% | |
AAGAAGTGAAGAGAGAAAAT+AGG | + | chr2_1:57614598-57614617 | Msa0213870:intron | 30.0% | |
ACTTACAAATTGGTACGAAA+AGG | + | chr2_1:57614623-57614642 | Msa0213870:intron | 30.0% | |
TTCTTTCATTGATCTTGTGA+TGG | - | chr2_1:57614686-57614705 | Msa0213880:three_prime_UTR | 30.0% | |
CAAAATCCAAATCATCAACT+GGG | + | chr2_1:57614712-57614731 | Msa0213870:intron | 30.0% | |
ACAAAATCCAAATCATCAAC+TGG | + | chr2_1:57614713-57614732 | Msa0213870:intron | 30.0% | |
GAATCTGATTCATGAAATTG+TGG | - | chr2_1:57614963-57614982 | Msa0213880:CDS | 30.0% | |
AAAACTCACACAAGTTAAAG+TGG | + | chr2_1:57615193-57615212 | Msa0213870:intron | 30.0% | |
TGGGATTCATCATAATGAAT+CGG | + | chr2_1:57615283-57615302 | Msa0213870:intron | 30.0% | |
TCGAGTCATTACAATGAATT+GGG | + | chr2_1:57615302-57615321 | Msa0213870:intron | 30.0% | |
ATCGAGTCATTACAATGAAT+TGG | + | chr2_1:57615303-57615322 | Msa0213870:intron | 30.0% | |
TTCACCAAGAACAACATTTA+TGG | - | chr2_1:57616070-57616089 | Msa0213880:CDS | 30.0% | |
AGTACCATAAATGTTGTTCT+TGG | + | chr2_1:57616077-57616096 | Msa0213870:intron | 30.0% | |
!! | ACTTTTCAGGAAACTGATTT+GGG | + | chr2_1:57616339-57616358 | Msa0213870:intron | 30.0% |
!! | AACTTTTCAGGAAACTGATT+TGG | + | chr2_1:57616340-57616359 | Msa0213870:intron | 30.0% |
GATTCCAAAATTTATCCTCT+TGG | - | chr2_1:57616360-57616379 | Msa0213880:CDS | 30.0% | |
! | ATTGCCAAGAGGATAAATTT+TGG | + | chr2_1:57616367-57616386 | Msa0213870:intron | 30.0% |
TTTGTATTGTGAAGATGTTG+CGG | - | chr2_1:57616438-57616457 | Msa0213880:CDS | 30.0% | |
GTTGGACATGTTTACAATAT+TGG | - | chr2_1:57616493-57616512 | Msa0213880:CDS | 30.0% | |
ATATTGGAACTAAGAAGGAA+AGG | - | chr2_1:57616509-57616528 | Msa0213880:CDS | 30.0% | |
!! | ACAAATTTTATGCTAGTCTC+CGG | + | chr2_1:57616583-57616602 | Msa0213870:intron | 30.0% |
! | GATCAAAAGTTGAAGGTTTT+GGG | - | chr2_1:57616643-57616662 | Msa0213880:CDS | 30.0% |
GGTATATCAACAATCCTAAT+TGG | - | chr2_1:57616716-57616735 | Msa0213880:CDS | 30.0% | |
ATATCAACAATCCTAATTGG+TGG | - | chr2_1:57616719-57616738 | Msa0213880:CDS | 30.0% | |
TATCAACAATCCTAATTGGT+GGG | - | chr2_1:57616720-57616739 | Msa0213880:CDS | 30.0% | |
! | ATCATTAACATTTTCGGATG+AGG | + | chr2_1:57616769-57616788 | Msa0213870:intron | 30.0% |
GTATTAGTACTTGAGACAAA+CGG | + | chr2_1:57616844-57616863 | Msa0213870:intron | 30.0% | |
TAGCATAGTTCATCATCAAA+AGG | + | chr2_1:57617197-57617216 | Msa0213870:intron | 30.0% | |
TTCTTTCTATTCCAAAACCA+AGG | - | chr2_1:57617302-57617321 | Msa0213880:intron | 30.0% | |
! | TTGAACAAGATTTGTTCAAC+AGG | + | chr2_1:57617424-57617443 | Msa0213870:intron | 30.0% |
TTAATCTGTGAATGTTTCTC+AGG | - | chr2_1:57617485-57617504 | Msa0213880:intron | 30.0% | |
TCTTCCTATTTCAATTGAGA+TGG | - | chr2_1:57617665-57617684 | Msa0213880:intron | 30.0% | |
TTTGCCATCTCAATTGAAAT+AGG | + | chr2_1:57617672-57617691 | Msa0213870:intron | 30.0% | |
TGGGAATTCATTCTTCAATT+TGG | + | chr2_1:57617868-57617887 | Msa0213870:intron | 30.0% | |
CTTGATAAGTGATTCTTTGA+TGG | + | chr2_1:57617901-57617920 | Msa0213870:intron | 30.0% | |
! | GCTACCAAATTTTTGTGTTT+TGG | - | chr2_1:57617991-57618010 | Msa0213880:intron | 30.0% |
GTAGCCAAAACACAAAAATT+TGG | + | chr2_1:57617998-57618017 | Msa0213870:intron | 30.0% | |
ATTATAATTGGGGTTAGGTA+TGG | - | chr2_1:57618101-57618120 | Msa0213880:intron | 30.0% | |
TCATGTCTTCAATATCAGAA+TGG | + | chr2_1:57618213-57618232 | Msa0213870:intron | 30.0% | |
TGTGAGTTATGTTTGTGTAT+TGG | - | chr2_1:57618263-57618282 | Msa0213880:five_prime_UTR | 30.0% | |
AAAAAAACAGAGCAAGAGTG+AGG | + | chr2_1:57614655-57614674 | Msa0213870:intron | 35.0% | |
ATTGACTACACAAAGTTGAC+AGG | + | chr2_1:57615362-57615381 | Msa0213870:intron | 35.0% | |
!!! | TTTTGCAGAAGTTGGTGATA+TGG | - | chr2_1:57615745-57615764 | Msa0213880:CDS | 35.0% |
!!! | GGTAATGAGGATGTTTTTTG+GGG | + | chr2_1:57615780-57615799 | Msa0213870:intron | 35.0% |
!!! | CGGTAATGAGGATGTTTTTT+GGG | + | chr2_1:57615781-57615800 | Msa0213870:intron | 35.0% |
CCAAAAAACATCCTCATTAC+CGG | - | chr2_1:57615779-57615798 | Msa0213880:CDS | 35.0% | |
CAAAAAACATCCTCATTACC+GGG | - | chr2_1:57615780-57615799 | Msa0213880:CDS | 35.0% | |
AAAAAACATCCTCATTACCG+GGG | - | chr2_1:57615781-57615800 | Msa0213880:CDS | 35.0% | |
! | AGGACAACAATTTTGTAGTC+GGG | + | chr2_1:57615857-57615876 | Msa0213870:intron | 35.0% |
! | GAGGACAACAATTTTGTAGT+CGG | + | chr2_1:57615858-57615877 | Msa0213870:intron | 35.0% |
AAGTTTGGAGATGATCTTGA+AGG | + | chr2_1:57615920-57615939 | Msa0213870:intron | 35.0% | |
! | TCCAAACTTCAAGTTTGTGA+AGG | - | chr2_1:57615931-57615950 | Msa0213880:CDS | 35.0% |
! | CCAAACTTCAAGTTTGTGAA+GGG | - | chr2_1:57615932-57615951 | Msa0213880:CDS | 35.0% |
! | TGTCTTATTAGAAGCTTGCA+AGG | - | chr2_1:57616099-57616118 | Msa0213880:CDS | 35.0% |
TTTGAACCATCACCATGAAT+CGG | + | chr2_1:57616406-57616425 | Msa0213870:intron | 35.0% | |
TCTTGACGATCAAAAGTTGA+AGG | - | chr2_1:57616636-57616655 | Msa0213880:CDS | 35.0% | |
! | CGATCAAAAGTTGAAGGTTT+TGG | - | chr2_1:57616642-57616661 | Msa0213880:CDS | 35.0% |
!!! | AAAAGTTGAAGGTTTTGGGT+TGG | - | chr2_1:57616647-57616666 | Msa0213880:CDS | 35.0% |
ATTGTTGATATACCAGTCCA+TGG | + | chr2_1:57616710-57616729 | Msa0213870:intron | 35.0% | |
ATCAACAATCCTAATTGGTG+GGG | - | chr2_1:57616721-57616740 | Msa0213880:CDS | 35.0% | |
! | CCAGGCATCATTAACATTTT+CGG | + | chr2_1:57616775-57616794 | Msa0213870:intron | 35.0% |
AAAATGTTAATGATGCCTGG+TGG | - | chr2_1:57616775-57616794 | Msa0213880:CDS | 35.0% | |
AAATGTTAATGATGCCTGGT+GGG | - | chr2_1:57616776-57616795 | Msa0213880:CDS | 35.0% | |
CTCAAGTACTAATACTCGAA+TGG | - | chr2_1:57616849-57616868 | Msa0213880:CDS | 35.0% | |
AAGTACTAATACTCGAATGG+TGG | - | chr2_1:57616852-57616871 | Msa0213880:CDS | 35.0% | |
TTCTTGATCTATGGAAGAAC+TGG | - | chr2_1:57616922-57616941 | Msa0213880:CDS | 35.0% | |
GGAAATTGTGTGAGAAACAA+GGG | - | chr2_1:57616965-57616984 | Msa0213880:CDS | 35.0% | |
CAAGGGATTCCATATGAATA+TGG | - | chr2_1:57616982-57617001 | Msa0213880:CDS | 35.0% | |
GCTGCATTGAAAATATGAGT+TGG | + | chr2_1:57617063-57617082 | Msa0213870:intron | 35.0% | |
! | ACTCATATTTTCAATGCAGC+AGG | - | chr2_1:57617063-57617082 | Msa0213880:CDS | 35.0% |
!! | TTGATGATGAACTATGCTAC+CGG | - | chr2_1:57617198-57617217 | Msa0213880:intron | 35.0% |
!!! | GGTTTTGGAATAGAAAGAAC+CGG | + | chr2_1:57617301-57617320 | Msa0213870:intron | 35.0% |
TTGCTTAGGTCAGATGAAAT+TGG | + | chr2_1:57617564-57617583 | Msa0213870:intron | 35.0% | |
TTTCAATTGAGATGGCAAAG+AGG | - | chr2_1:57617673-57617692 | Msa0213880:intron | 35.0% | |
ACATTGATCCAAACTTCAAG+TGG | - | chr2_1:57617772-57617791 | Msa0213880:intron | 35.0% | |
CATTGATCCAAACTTCAAGT+GGG | - | chr2_1:57617773-57617792 | Msa0213880:intron | 35.0% | |
TGCAAGAAGCAACAATGAAA+TGG | - | chr2_1:57617836-57617855 | Msa0213880:intron | 35.0% | |
CTTTGATGGAAAGCAATTCT+GGG | + | chr2_1:57617887-57617906 | Msa0213870:intron | 35.0% | |
TCTTTGATGGAAAGCAATTC+TGG | + | chr2_1:57617888-57617907 | Msa0213870:intron | 35.0% | |
GGAGCTGAAATCGAAATCTA+CGG | + | chr2_1:57614577-57614596 | Msa0213870:intron | 40.0% | |
CACAAAGTTGACAGGAAAAG+TGG | + | chr2_1:57615354-57615373 | Msa0213870:intron | 40.0% | |
TCGAGATTTCGATCTCGAAT+CGG | + | chr2_1:57615517-57615536 | Msa0213870:intron | 40.0% | |
!!! | CCGGTAATGAGGATGTTTTT+TGG | + | chr2_1:57615782-57615801 | Msa0213870:intron | 40.0% |
! | TTTTGTAGTCGGGATAGTTC+CGG | + | chr2_1:57615847-57615866 | Msa0213870:intron | 40.0% |
AACAGTAATCGAGTTTGTCG+AGG | + | chr2_1:57615877-57615896 | Msa0213870:intron | 40.0% | |
GAGATGATCTTGAAGGAATG+AGG | + | chr2_1:57615913-57615932 | Msa0213870:intron | 40.0% | |
CCCTTCACAAACTTGAAGTT+TGG | + | chr2_1:57615935-57615954 | Msa0213870:intron | 40.0% | |
TGATGAGAAGGTAGTTGACA+AGG | + | chr2_1:57615976-57615995 | Msa0213870:intron | 40.0% | |
! | ACTCATGTCGACAACTCTTT+TGG | - | chr2_1:57616034-57616053 | Msa0213880:CDS | 40.0% |
TTAGAAGCTTGCAAGGTAAC+TGG | - | chr2_1:57616106-57616125 | Msa0213880:CDS | 40.0% | |
TTTCCACGTGTTGTGATTAC+CGG | + | chr2_1:57616304-57616323 | Msa0213870:intron | 40.0% | |
ACACGTGGAAACAATGTCTA+TGG | - | chr2_1:57616313-57616332 | Msa0213880:CDS | 40.0% | |
TTTATCCTCTTGGCAATGCA+AGG | - | chr2_1:57616370-57616389 | Msa0213880:CDS | 40.0% | |
GGAAAAGTTCTTCCGATTCA+TGG | - | chr2_1:57616391-57616410 | Msa0213880:CDS | 40.0% | |
!! | ATGGTGATGGTTCAAATGTG+AGG | - | chr2_1:57616410-57616429 | Msa0213880:CDS | 40.0% |
AGTTATCCTTCATAAGGGAG+AGG | - | chr2_1:57616471-57616490 | Msa0213880:CDS | 40.0% | |
GAAGAGCTTGCATATATCAG+TGG | + | chr2_1:57616551-57616570 | Msa0213870:intron | 40.0% | |
CAAGCTCTTCTCAATTGATC+CGG | - | chr2_1:57616561-57616580 | Msa0213880:CDS | 40.0% | |
TTCTTCCCATGTTGTTCTCT+CGG | + | chr2_1:57616674-57616693 | Msa0213870:intron | 40.0% | |
AGAAGGCTTGAAGAAAACCA+TGG | - | chr2_1:57616690-57616709 | Msa0213880:CDS | 40.0% | |
CCGAAAATGTTAATGATGCC+TGG | - | chr2_1:57616772-57616791 | Msa0213880:CDS | 40.0% | |
GGATGGAGAGACATTTCAAT+GGG | - | chr2_1:57616797-57616816 | Msa0213880:CDS | 40.0% | |
TAGATCAAGAACTTGAGAGG+AGG | + | chr2_1:57616913-57616932 | Msa0213870:intron | 40.0% | |
CCATAGATCAAGAACTTGAG+AGG | + | chr2_1:57616916-57616935 | Msa0213870:intron | 40.0% | |
CCTCTCAAGTTCTTGATCTA+TGG | - | chr2_1:57616913-57616932 | Msa0213880:CDS | 40.0% | |
TGATCTATGGAAGAACTGGT+TGG | - | chr2_1:57616926-57616945 | Msa0213880:CDS | 40.0% | |
TATGGAAGAACTGGTTGGAT+CGG | - | chr2_1:57616931-57616950 | Msa0213880:CDS | 40.0% | |
GGGAAATTGTGTGAGAAACA+AGG | - | chr2_1:57616964-57616983 | Msa0213880:CDS | 40.0% | |
! | CGCCCTTTTCCATATTCATA+TGG | + | chr2_1:57616994-57617013 | Msa0213870:intron | 40.0% |
GATTCACACCAATCAACGTT+AGG | + | chr2_1:57617102-57617121 | Msa0213870:intron | 40.0% | |
CGTTGTTGGGACTTTAACAT+TGG | - | chr2_1:57617149-57617168 | Msa0213880:intron | 40.0% | |
! | TGATGATGAACTATGCTACC+GGG | - | chr2_1:57617199-57617218 | Msa0213880:intron | 40.0% |
ATCATACTCGAATATGCACC+CGG | + | chr2_1:57617220-57617239 | Msa0213870:intron | 40.0% | |
TATGATGAAGCTCATCCAGA+AGG | - | chr2_1:57617234-57617253 | Msa0213880:intron | 40.0% | |
TAGAAAGAACCGGCGAAATT+AGG | + | chr2_1:57617291-57617310 | Msa0213870:intron | 40.0% | |
CTATTCCAAAACCAAGGCAA+TGG | - | chr2_1:57617308-57617327 | Msa0213880:intron | 40.0% | |
ATGACAATGTATGCACTCTC+AGG | - | chr2_1:57617529-57617548 | Msa0213880:intron | 40.0% | |
TGACAATGTATGCACTCTCA+GGG | - | chr2_1:57617530-57617549 | Msa0213880:intron | 40.0% | |
! | TGAAATTGCGTGGATTGCTT+AGG | + | chr2_1:57617578-57617597 | Msa0213870:intron | 40.0% |
!! | ATCTTGGTGATGAAATTGCG+TGG | + | chr2_1:57617588-57617607 | Msa0213870:intron | 40.0% |
! | TCCAAACAGCATGACTGTTT+TGG | - | chr2_1:57617635-57617654 | Msa0213880:intron | 40.0% |
TCCAAAACAGTCATGCTGTT+TGG | + | chr2_1:57617639-57617658 | Msa0213870:intron | 40.0% | |
TGAAGTTCCAGATACCTCTT+AGG | + | chr2_1:57617701-57617720 | Msa0213870:intron | 40.0% | |
! | ATCTGGAACTTCACAAATCC+TGG | - | chr2_1:57617708-57617727 | Msa0213880:intron | 40.0% |
AAGTTAGCCCACTTGAAGTT+TGG | + | chr2_1:57617783-57617802 | Msa0213870:intron | 40.0% | |
TCTTGCAGCAACTATCACTT+TGG | + | chr2_1:57617823-57617842 | Msa0213870:intron | 40.0% | |
!! | TGATGGCCCAGTTGATGATT+TGG | - | chr2_1:57614703-57614722 | Msa0213880:three_prime_UTR | 45.0% |
CGATAGACTCAGTGATGAGA+AGG | + | chr2_1:57615988-57616007 | Msa0213870:intron | 45.0% | |
!! | CATCCATGTAAGCACTGATG+AGG | - | chr2_1:57616144-57616163 | Msa0213880:CDS | 45.0% |
AGACCTCATCAGTGCTTACA+TGG | + | chr2_1:57616150-57616169 | Msa0213870:intron | 45.0% | |
!! | GTAAGCACTGATGAGGTCTA+TGG | - | chr2_1:57616151-57616170 | Msa0213880:CDS | 45.0% |
GTTGCAGAGTACGGATTTGT+TGG | + | chr2_1:57616229-57616248 | Msa0213870:intron | 45.0% | |
! | CCAGCTTTTGTTGCAGAGTA+CGG | + | chr2_1:57616238-57616257 | Msa0213870:intron | 45.0% |
CGTACTCTGCAACAAAAGCT+GGG | - | chr2_1:57616236-57616255 | Msa0213880:CDS | 45.0% | |
GTACTCTGCAACAAAAGCTG+GGG | - | chr2_1:57616237-57616256 | Msa0213880:CDS | 45.0% | |
ATGGCGTATGGTAGGTCTTA+TGG | - | chr2_1:57616274-57616293 | Msa0213880:CDS | 45.0% | |
! | TGGTAGGTCTTATGGATTGC+CGG | - | chr2_1:57616282-57616301 | Msa0213880:CDS | 45.0% |
! | CTTTTCCTTGCATTGCCAAG+AGG | + | chr2_1:57616378-57616397 | Msa0213870:intron | 45.0% |
GTTCTTCCGATTCATGGTGA+TGG | - | chr2_1:57616397-57616416 | Msa0213880:CDS | 45.0% | |
GTATTGTGAAGATGTTGCGG+AGG | - | chr2_1:57616441-57616460 | Msa0213880:CDS | 45.0% | |
ATCCTTCATAAGGGAGAGGT+TGG | - | chr2_1:57616475-57616494 | Msa0213880:CDS | 45.0% | |
TTGGTCCGAGAGAACAACAT+GGG | - | chr2_1:57616666-57616685 | Msa0213880:CDS | 45.0% | |
GAGAGAACAACATGGGAAGA+AGG | - | chr2_1:57616673-57616692 | Msa0213880:CDS | 45.0% | |
GCTTGAAGAAAACCATGGAC+TGG | - | chr2_1:57616695-57616714 | Msa0213880:CDS | 45.0% | |
GGGATGGAGAGACATTTCAA+TGG | - | chr2_1:57616796-57616815 | Msa0213880:CDS | 45.0% | |
! | GTTCCACCTACAAAGAGCAT+TGG | - | chr2_1:57616874-57616893 | Msa0213880:CDS | 45.0% |
GAAGAGCCAATGCTCTTTGT+AGG | + | chr2_1:57616883-57616902 | Msa0213870:intron | 45.0% | |
!! | ATATGGAAAAGGGCGTCTTG+AGG | - | chr2_1:57616999-57617018 | Msa0213880:CDS | 45.0% |
AAGTCCCAACAACGTTGACA+CGG | + | chr2_1:57617143-57617162 | Msa0213870:intron | 45.0% | |
ATCCAGAAGGTTCAGGCATT+GGG | - | chr2_1:57617247-57617266 | Msa0213880:intron | 45.0% | |
!! | AGGTTCAGGCATTGGGTTTA+AGG | - | chr2_1:57617254-57617273 | Msa0213880:intron | 45.0% |
GAAGACACTCCTAATTTCGC+CGG | - | chr2_1:57617279-57617298 | Msa0213880:intron | 45.0% | |
! | GCTTACCATTGCCTTGGTTT+TGG | + | chr2_1:57617316-57617335 | Msa0213870:intron | 45.0% |
! | TAGCTAGCTTACCATTGCCT+TGG | + | chr2_1:57617322-57617341 | Msa0213870:intron | 45.0% |
ATGGCAAAGAGGAACCTAAG+AGG | - | chr2_1:57617684-57617703 | Msa0213880:intron | 45.0% | |
!! | AGAGGAACCTAAGAGGTATC+TGG | - | chr2_1:57617691-57617710 | Msa0213880:intron | 45.0% |
ACATCTCGAGAATCTCGTTG+TGG | + | chr2_1:57617743-57617762 | Msa0213870:intron | 45.0% | |
!! | GTTACCTTGTGAGCTTGCTA+CGG | - | chr2_1:57618178-57618197 | Msa0213880:intron | 45.0% |
TTAACCGTAGCAAGCTCACA+AGG | + | chr2_1:57618185-57618204 | Msa0213870:intron | 45.0% | |
AAACATCCTCATTACCGGGG+CGG | - | chr2_1:57615784-57615803 | Msa0213880:CDS | 50.0% | |
TTGCGTCTCATGTTGCCAAC+CGG | - | chr2_1:57615816-57615835 | Msa0213880:CDS | 50.0% | |
! | ATGTTGCCAACCGGCTTATC+CGG | - | chr2_1:57615825-57615844 | Msa0213880:CDS | 50.0% |
ATAGTTCCGGATAAGCCGGT+TGG | + | chr2_1:57615834-57615853 | Msa0213870:intron | 50.0% | |
GGTCTATGGAGAGACAGATG+AGG | - | chr2_1:57616165-57616184 | Msa0213880:CDS | 50.0% | |
TGGAGAGACAGATGAGGATG+CGG | - | chr2_1:57616171-57616190 | Msa0213880:CDS | 50.0% | |
ACAGATGAGGATGCGGTTGT+TGG | - | chr2_1:57616178-57616197 | Msa0213880:CDS | 50.0% | |
CCGTACTCTGCAACAAAAGC+TGG | - | chr2_1:57616235-57616254 | Msa0213880:CDS | 50.0% | |
GAAATGCTCGTCATGGCGTA+TGG | - | chr2_1:57616262-57616281 | Msa0213880:CDS | 50.0% | |
TTGCCGGTAATCACAACACG+TGG | - | chr2_1:57616298-57616317 | Msa0213880:CDS | 50.0% | |
GTCCAACCTCTCCCTTATGA+AGG | + | chr2_1:57616480-57616499 | Msa0213870:intron | 50.0% | |
GTTGGTCCGAGAGAACAACA+TGG | - | chr2_1:57616665-57616684 | Msa0213880:CDS | 50.0% | |
GTTAATGATGCCTGGTGGGA+TGG | - | chr2_1:57616780-57616799 | Msa0213880:CDS | 50.0% | |
AAATGTCTCTCCATCCCACC+AGG | + | chr2_1:57616793-57616812 | Msa0213870:intron | 50.0% | |
GAGCCAATGCTCTTTGTAGG+TGG | + | chr2_1:57616880-57616899 | Msa0213870:intron | 50.0% | |
!! | GTTGGATCGGTGGTTTGCTT+GGG | - | chr2_1:57616944-57616963 | Msa0213880:CDS | 50.0% |
TGAGGATCGTTCATCACTCG+TGG | - | chr2_1:57617017-57617036 | Msa0213880:CDS | 50.0% | |
TTTCAATGCAGCAGGCGTGA+CGG | - | chr2_1:57617071-57617090 | Msa0213880:CDS | 50.0% | |
CGGGAAGACCTAACGTTGAT+TGG | - | chr2_1:57617091-57617110 | Msa0213880:CDS | 50.0% | |
ACCATCCGTGTCAACGTTGT+TGG | - | chr2_1:57617135-57617154 | Msa0213880:intron | 50.0% | |
CCATCCGTGTCAACGTTGTT+GGG | - | chr2_1:57617136-57617155 | Msa0213880:intron | 50.0% | |
GAAGCTCATCCAGAAGGTTC+AGG | - | chr2_1:57617240-57617259 | Msa0213880:intron | 50.0% | |
CATCCAGAAGGTTCAGGCAT+TGG | - | chr2_1:57617246-57617265 | Msa0213880:intron | 50.0% | |
AACCCAATGCCTGAACCTTC+TGG | + | chr2_1:57617252-57617271 | Msa0213870:intron | 50.0% | |
GAGAATCTCGTTGTGGCTCA+CGG | + | chr2_1:57617736-57617755 | Msa0213870:intron | 50.0% | |
CGGGATAGTTCCGGATAAGC+CGG | + | chr2_1:57615838-57615857 | Msa0213870:intron | 55.0% | |
TGCGGTTGTTGGAAACCACG+AGG | - | chr2_1:57616189-57616208 | Msa0213880:CDS | 55.0% | |
GAAGTAGCTGAGAAGCCTCG+TGG | + | chr2_1:57616207-57616226 | Msa0213870:intron | 55.0% | |
TGGGGCTGAAATGCTCGTCA+TGG | - | chr2_1:57616255-57616274 | Msa0213880:CDS | 55.0% | |
TGCTCGTCATGGCGTATGGT+AGG | - | chr2_1:57616266-57616285 | Msa0213880:CDS | 55.0% | |
CTCACATCGCCCCACCAATT+AGG | + | chr2_1:57616733-57616752 | Msa0213870:intron | 55.0% | |
AATTGGTGGGGCGATGTGAG+TGG | - | chr2_1:57616733-57616752 | Msa0213880:CDS | 55.0% | |
GGAAGAACTGGTTGGATCGG+TGG | - | chr2_1:57616934-57616953 | Msa0213880:CDS | 55.0% | |
!! | GGTTGGATCGGTGGTTTGCT+TGG | - | chr2_1:57616943-57616962 | Msa0213880:CDS | 55.0% |
TTCAATGCAGCAGGCGTGAC+GGG | - | chr2_1:57617072-57617091 | Msa0213880:CDS | 55.0% | |
CCCAACAACGTTGACACGGA+TGG | + | chr2_1:57617139-57617158 | Msa0213870:intron | 55.0% | |
ATCCTCATTACCGGGGCGGC+TGG | - | chr2_1:57615788-57615807 | Msa0213880:CDS | 65.0% | |
ATCCAGCCGCCCCGGTAATG+AGG | + | chr2_1:57615793-57615812 | Msa0213870:intron | 65.0% | |
CGCAATGAATCCAGCCGCCC+CGG | + | chr2_1:57615801-57615820 | Msa0213870:intron | 65.0% | |
TCGTTGTGGCTCACGGCGCC+AGG | + | chr2_1:57617729-57617748 | Msa0213870:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 57614515 | 57618361 | 57614515 | ID=Msa0213880;Name=Msa0213880 |
chr2_1 | mRNA | 57614515 | 57618361 | 57614515 | ID=Msa0213880-mRNA-1;Parent=Msa0213880;Name=Msa0213880-mRNA-1;_AED=0.04;_eAED=0.04;_QI=133|1|1|1|0.5|0.33|3|408|670 |
chr2_1 | exon | 57614515 | 57615369 | 57614515 | ID=Msa0213880-mRNA-1:exon:15945;Parent=Msa0213880-mRNA-1 |
chr2_1 | exon | 57615547 | 57617123 | 57615547 | ID=Msa0213880-mRNA-1:exon:15944;Parent=Msa0213880-mRNA-1 |
chr2_1 | exon | 57618240 | 57618361 | 57618240 | ID=Msa0213880-mRNA-1:exon:15943;Parent=Msa0213880-mRNA-1 |
chr2_1 | five_prime_UTR | 57618240 | 57618361 | 57618240 | ID=Msa0213880-mRNA-1:five_prime_utr;Parent=Msa0213880-mRNA-1 |
chr2_1 | five_prime_UTR | 57617113 | 57617123 | 57617113 | ID=Msa0213880-mRNA-1:five_prime_utr;Parent=Msa0213880-mRNA-1 |
chr2_1 | CDS | 57615547 | 57617112 | 57615547 | ID=Msa0213880-mRNA-1:cds;Parent=Msa0213880-mRNA-1 |
chr2_1 | CDS | 57614923 | 57615369 | 57614923 | ID=Msa0213880-mRNA-1:cds;Parent=Msa0213880-mRNA-1 |
chr2_1 | three_prime_UTR | 57614515 | 57614922 | 57614515 | ID=Msa0213880-mRNA-1:three_prime_utr;Parent=Msa0213880-mRNA-1 |
Gene Sequence |
Protein sequence |