AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0213880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0213880 MtrunA17_Chr2g0314601 99.403 670 4 0 1 670 1 670 0.0 1388
Msa0213880 MtrunA17_Chr8g0359401 89.521 668 69 1 1 668 1 667 0.0 1264
Msa0213880 MtrunA17_Chr1g0147841 74.925 666 155 2 4 669 2 655 0.0 1046
Msa0213880 MtrunA17_Chr4g0057161 82.007 289 52 0 380 668 7 295 2.14e-174 498
Msa0213880 MtrunA17_Chr3g0097081 61.780 191 42 2 85 274 1 161 9.56e-67 221
Msa0213880 MtrunA17_Chr3g0097081 52.893 121 50 1 362 475 137 257 5.86e-32 125
Msa0213880 MtrunA17_Chr2g0327981 30.573 314 189 10 9 312 40 334 5.86e-27 112
Msa0213880 MtrunA17_Chr4g0031131 28.617 311 199 10 9 312 34 328 4.16e-26 110
Msa0213880 MtrunA17_Chr4g0067461 27.619 315 195 11 7 312 111 401 1.96e-25 109
Msa0213880 MtrunA17_Chr8g0380921 26.243 362 218 15 1 327 63 410 9.46e-25 107
Msa0213880 MtrunA17_Chr2g0293521 25.978 358 224 13 1 327 63 410 2.94e-24 105
Msa0213880 MtrunA17_Chr4g0073351 27.193 342 208 9 8 321 96 424 3.07e-22 100
Msa0213880 MtrunA17_Chr4g0011281 26.822 343 208 8 8 321 102 430 2.09e-20 94.7
Msa0213880 MtrunA17_Chr1g0195521 26.524 328 201 13 8 312 119 429 1.01e-19 92.4
Msa0213880 MtrunA17_Chr4g0056941 28.274 336 212 10 7 320 93 421 1.75e-19 91.7
Msa0213880 MtrunA17_Chr5g0398811 26.571 350 222 10 5 326 88 430 2.98e-19 90.9
Msa0213880 MtrunA17_Chr7g0230291 26.608 342 210 8 8 321 83 411 4.06e-19 90.5
Msa0213880 MtrunA17_Chr8g0388261 27.066 351 217 13 7 328 4 344 1.47e-18 87.8
Msa0213880 MtrunA17_Chr4g0076751 24.217 351 225 14 7 327 25 364 1.96e-18 87.8
Msa0213880 MtrunA17_Chr3g0121661 26.647 334 216 10 9 320 101 427 3.25e-17 84.7
Msa0213880 MtrunA17_Chr3g0136511 29.796 245 147 9 1 234 1 231 1.09e-14 77.4
Msa0213880 MtrunA17_Chr1g0208111 24.377 361 218 14 6 318 18 371 1.26e-14 76.3
Msa0213880 MtrunA17_Chr1g0182091 28.372 215 140 7 105 312 4 211 2.63e-14 73.2
Msa0213880 MtrunA17_Chr3g0133771 24.280 243 169 6 7 248 2 230 1.63e-12 69.3
Msa0213880 MtrunA17_Chr4g0027491 23.546 361 221 13 6 318 18 371 2.74e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0213880 AT1G78570.1 88.077 671 76 2 1 669 1 669 0.0 1239
Msa0213880 AT3G14790.2 85.351 669 93 2 1 669 4 667 0.0 1170
Msa0213880 AT3G14790.1 85.351 669 93 2 1 669 1 664 0.0 1170
Msa0213880 AT1G53500.1 85.479 668 93 3 2 669 4 667 0.0 1161
Msa0213880 AT1G63000.1 83.039 283 48 0 387 669 15 297 1.56e-177 507
Msa0213880 AT2G28760.1 30.032 313 192 10 9 312 33 327 4.25e-28 116
Msa0213880 AT2G28760.2 30.032 313 192 10 9 312 33 327 4.25e-28 116
Msa0213880 AT2G28760.3 30.032 313 192 10 9 312 33 327 4.25e-28 116
Msa0213880 AT4G20460.1 27.714 350 212 12 8 327 71 409 7.08e-28 117
Msa0213880 AT2G28760.4 30.032 313 192 10 9 312 64 358 1.02e-27 115
Msa0213880 AT5G59290.4 29.712 313 193 10 9 312 3 297 1.38e-27 114
Msa0213880 AT5G59290.1 29.712 313 193 10 9 312 32 326 1.94e-27 114
Msa0213880 AT5G59290.3 29.712 313 193 10 9 312 25 319 2.23e-27 114
Msa0213880 AT5G59290.2 29.712 313 193 10 9 312 47 341 3.14e-27 114
Msa0213880 AT3G46440.2 29.393 313 194 10 9 312 31 325 4.67e-27 113
Msa0213880 AT3G46440.1 29.393 313 194 10 9 312 31 325 4.67e-27 113
Msa0213880 AT3G53520.1 27.187 320 209 10 9 321 122 424 8.93e-25 108
Msa0213880 AT3G62830.2 27.157 313 200 10 9 312 121 414 1.32e-24 107
Msa0213880 AT3G62830.1 27.157 313 200 10 9 312 121 414 1.32e-24 107
Msa0213880 AT2G47650.1 26.837 313 201 10 9 312 123 416 5.34e-24 105
Msa0213880 AT5G44480.3 26.989 352 210 15 8 326 72 409 1.23e-23 104
Msa0213880 AT5G44480.4 26.989 352 210 15 8 326 72 409 1.23e-23 104
Msa0213880 AT5G44480.2 26.989 352 210 15 8 326 72 409 1.23e-23 104
Msa0213880 AT5G44480.1 26.989 352 210 15 8 326 96 433 1.46e-23 104
Msa0213880 AT2G47650.2 26.498 317 203 10 9 312 123 422 7.41e-23 102
Msa0213880 AT1G30620.3 27.809 356 214 15 4 327 65 409 1.37e-22 101
Msa0213880 AT3G53520.2 26.875 320 208 11 9 321 122 422 1.46e-22 101
Msa0213880 AT1G30620.1 27.809 356 214 15 4 327 66 410 1.48e-22 101
Msa0213880 AT1G30620.6 27.809 356 214 15 4 327 66 410 1.48e-22 101
Msa0213880 AT1G30620.4 27.809 356 214 15 4 327 66 410 1.48e-22 101
Msa0213880 AT1G30620.2 27.809 356 214 15 4 327 66 410 1.48e-22 101
Msa0213880 AT3G53520.4 25.948 343 207 11 9 321 122 447 8.46e-22 99.4
Msa0213880 AT1G63180.1 26.331 357 222 14 1 327 1 346 1.03e-20 94.7
Msa0213880 AT4G00110.1 26.844 339 219 8 8 324 92 423 2.23e-20 94.7
Msa0213880 AT2G45310.1 26.866 335 216 9 9 321 99 426 9.79e-20 92.8
Msa0213880 AT1G02000.1 25.893 336 220 9 8 321 93 421 7.98e-19 90.1
Msa0213880 AT4G30440.1 30.901 233 151 6 8 234 89 317 2.48e-18 88.6
Msa0213880 AT1G64440.1 27.920 351 210 15 8 327 4 342 5.59e-18 86.7
Msa0213880 AT1G30620.5 30.256 195 121 6 4 191 66 252 1.33e-17 84.3
Msa0213880 AT3G53520.3 27.897 233 148 7 8 234 121 339 2.25e-17 84.7
Msa0213880 AT4G23920.1 26.163 344 219 12 7 323 3 338 3.89e-16 80.9
Msa0213880 AT1G63180.2 26.689 296 181 11 1 267 1 289 4.45e-16 80.1
Msa0213880 AT3G23820.1 26.567 335 217 10 8 320 113 440 1.53e-15 80.1
Msa0213880 AT1G47290.1 26.757 370 201 15 3 319 6 358 6.57e-15 77.4
Msa0213880 AT4G12250.1 26.100 341 223 8 3 321 92 425 1.54e-14 77.0
Msa0213880 AT1G47290.2 26.757 370 201 15 3 319 6 358 1.76e-14 76.6
Msa0213880 AT2G26260.1 26.506 249 148 8 2 234 5 234 1.76e-13 73.9
Msa0213880 AT1G73250.1 27.473 182 120 5 151 322 140 319 8.06e-13 70.5

Find 173 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGAATTCATTCTTCAATT+TGG 0.161081 2_1:+57614989 Msa0213870:intron
CGATCAAAAGTTGAAGGTTT+TGG 0.178673 2_1:-57616212 Msa0213880:CDS
AGGTTCAGGCATTGGGTTTA+AGG 0.187878 2_1:-57615600 Msa0213880:CDS
GCTTACCATTGCCTTGGTTT+TGG 0.211812 2_1:+57615541 Msa0213870:intron
TCTTTGATGGAAAGCAATTC+TGG 0.218557 2_1:+57614969 Msa0213870:intron
TTCACCAAGAACAACATTTA+TGG 0.223050 2_1:-57616784 Msa0213880:CDS
TAATTGATAAGTATTATAAT+TGG 0.230179 2_1:-57614765 Msa0213880:three_prime_UTR
GTTGGACATGTTTACAATAT+TGG 0.241068 2_1:-57616361 Msa0213880:CDS
CCCTTCACAAACTTGAAGTT+TGG 0.241790 2_1:+57616922 Msa0213870:intron
TTTGCCATCTCAATTGAAAT+AGG 0.250438 2_1:+57615185 Msa0213870:intron
ATTGCCAAGAGGATAAATTT+TGG 0.258449 2_1:+57616490 Msa0213870:intron
TAGAAAGAACCGGCGAAATT+AGG 0.282017 2_1:+57615566 Msa0213870:intron
AAGAAGTGAAGAGAGAAAAT+AGG 0.287535 2_1:+57618259 Msa0213870:intron
AACCCAATGCCTGAACCTTC+TGG 0.294957 2_1:+57615605 Msa0213870:intron
CTTGATAAGTGATTCTTTGA+TGG 0.295568 2_1:+57614956 Msa0213870:intron
CAAGGGATTCCATATGAATA+TGG 0.304468 2_1:-57615872 Msa0213880:CDS
AATTGATAAGTATTATAATT+GGG 0.306164 2_1:-57614764 Msa0213880:three_prime_UTR
TCCAAACAGCATGACTGTTT+TGG 0.309945 2_1:-57615219 Msa0213880:CDS
CCTCTCAAGTTCTTGATCTA+TGG 0.311827 2_1:-57615941 Msa0213880:CDS
GGTATATCAACAATCCTAAT+TGG 0.322317 2_1:-57616138 Msa0213880:CDS
ACTCATGTCGACAACTCTTT+TGG 0.326250 2_1:-57616820 Msa0213880:CDS
TGAAGTTCCAGATACCTCTT+AGG 0.329274 2_1:+57615156 Msa0213870:intron
ATGGCGTATGGTAGGTCTTA+TGG 0.335557 2_1:-57616580 Msa0213880:CDS
TTGCTTAGGTCAGATGAAAT+TGG 0.338530 2_1:+57615293 Msa0213870:intron
TTAGAAGCTTGCAAGGTAAC+TGG 0.349049 2_1:-57616748 Msa0213880:CDS
TTCTTCCCATGTTGTTCTCT+CGG 0.350950 2_1:+57616183 Msa0213870:intron
TTTCCACGTGTTGTGATTAC+CGG 0.356238 2_1:+57616553 Msa0213870:intron
AAGTTAGCCCACTTGAAGTT+TGG 0.358387 2_1:+57615074 Msa0213870:intron
ATCCAGAAGGTTCAGGCATT+GGG 0.362912 2_1:-57615607 Msa0213880:CDS
TGTGAGTTATGTTTGTGTAT+TGG 0.363789 2_1:-57614591 Msa0213880:three_prime_UTR
CTCACATCGCCCCACCAATT+AGG 0.372048 2_1:+57616124 Msa0213870:intron
AGTACCATAAATGTTGTTCT+TGG 0.373878 2_1:+57616780 Msa0213870:intron
ACACGTGGAAACAATGTCTA+TGG 0.379199 2_1:-57616541 Msa0213880:CDS
GGAAAAGTTCTTCCGATTCA+TGG 0.380568 2_1:-57616463 Msa0213880:CDS
TCCAAAACAGTCATGCTGTT+TGG 0.382722 2_1:+57615218 Msa0213870:intron
TTTATTGTAACGTGAAATCT+TGG 0.382737 2_1:+57615253 Msa0213870:intron
TTCTTGATCTATGGAAGAAC+TGG 0.390031 2_1:-57615932 Msa0213880:CDS
AGAGGAACCTAAGAGGTATC+TGG 0.395333 2_1:-57615163 Msa0213880:CDS
TTGTGTTTAGAAGATAATAT+TGG 0.401763 2_1:-57614788 Msa0213880:three_prime_UTR
CCGTACTCTGCAACAAAAGC+TGG 0.402137 2_1:-57616619 Msa0213880:CDS
AATCTACGGAGATTTAGATT+TGG 0.404375 2_1:+57618294 Msa0213870:intron
ATCCTCATTACCGGGGCGGC+TGG 0.406209 2_1:-57617066 Msa0213880:CDS
CTTTGATGGAAAGCAATTCT+GGG 0.407319 2_1:+57614970 Msa0213870:intron
ATGTTGCCAACCGGCTTATC+CGG 0.407727 2_1:-57617029 Msa0213880:CDS
GGTTGGATCGGTGGTTTGCT+TGG 0.414855 2_1:-57615911 Msa0213880:CDS
GATTCCAAAATTTATCCTCT+TGG 0.417223 2_1:-57616494 Msa0213880:CDS
GTTGGATCGGTGGTTTGCTT+GGG 0.417488 2_1:-57615910 Msa0213880:CDS
ACAGATGAGGATGCGGTTGT+TGG 0.419126 2_1:-57616676 Msa0213880:CDS
TAAACACAACAATAACAGTA+TGG 0.420329 2_1:+57614802 Msa0213870:intron
TCTTGACGATCAAAAGTTGA+AGG 0.421916 2_1:-57616218 Msa0213880:CDS
TAAGTATTATAATTGGGGTT+AGG 0.426960 2_1:-57614758 Msa0213880:three_prime_UTR
GTAAGCACTGATGAGGTCTA+TGG 0.433555 2_1:-57616703 Msa0213880:CDS
AAGTTTGGAGATGATCTTGA+AGG 0.433792 2_1:+57616937 Msa0213870:intron
CGGGAAGACCTAACGTTGAT+TGG 0.437127 2_1:-57615763 Msa0213880:CDS
CATCCAGAAGGTTCAGGCAT+TGG 0.437868 2_1:-57615608 Msa0213880:CDS
GAAGAGCCAATGCTCTTTGT+AGG 0.440799 2_1:+57615974 Msa0213870:intron
TTGCGTCTCATGTTGCCAAC+CGG 0.441564 2_1:-57617038 Msa0213880:CDS
TGGTAGGTCTTATGGATTGC+CGG 0.441733 2_1:-57616572 Msa0213880:CDS
ATGACAATGTATGCACTCTC+AGG 0.444077 2_1:-57615325 Msa0213880:CDS
ATTCCATATGAATATGGAAA+AGG 0.444160 2_1:-57615866 Msa0213880:CDS
ATTATAATTGGGGTTAGGTA+TGG 0.447743 2_1:-57614753 Msa0213880:three_prime_UTR
TAGCTAGCTTACCATTGCCT+TGG 0.452476 2_1:+57615535 Msa0213870:intron
CGTTGTTGGGACTTTAACAT+TGG 0.453861 2_1:-57615705 Msa0213880:CDS
GAAGCTCATCCAGAAGGTTC+AGG 0.456647 2_1:-57615614 Msa0213880:CDS
TTCAATGCAGCAGGCGTGAC+GGG 0.457186 2_1:-57615782 Msa0213880:CDS
TTTGAAGTTATCCTTCATAA+GGG 0.460918 2_1:-57616388 Msa0213880:CDS
CCATCCGTGTCAACGTTGTT+GGG 0.465475 2_1:-57615718 Msa0213880:CDS
ACCATCCGTGTCAACGTTGT+TGG 0.468379 2_1:-57615719 Msa0213880:CDS
TCGTTGTGGCTCACGGCGCC+AGG 0.468437 2_1:+57615128 Msa0213870:intron
AAGTATCTCTGATCATTAAA+CGG 0.469948 2_1:+57616241 Msa0213870:intron
ATCTGGAACTTCACAAATCC+TGG 0.470303 2_1:-57615146 Msa0213880:CDS
CGCAATGAATCCAGCCGCCC+CGG 0.478937 2_1:+57617056 Msa0213870:intron
TTACAATATTGGAACTAAGA+AGG 0.484035 2_1:-57616350 Msa0213880:CDS
CGTACTCTGCAACAAAAGCT+GGG 0.487722 2_1:-57616618 Msa0213880:CDS
GTTGCAGAGTACGGATTTGT+TGG 0.489137 2_1:+57616628 Msa0213870:intron
GAGATGATCTTGAAGGAATG+AGG 0.489742 2_1:+57616944 Msa0213870:intron
ATTGATAAGTATTATAATTG+GGG 0.495923 2_1:-57614763 Msa0213880:three_prime_UTR
ACTTACAAATTGGTACGAAA+AGG 0.496883 2_1:+57618234 Msa0213870:intron
TCTTCCTATTTCAATTGAGA+TGG 0.498900 2_1:-57615189 Msa0213880:CDS
TCTTGCAGCAACTATCACTT+TGG 0.499126 2_1:+57615034 Msa0213870:intron
ATCCTTCATAAGGGAGAGGT+TGG 0.502469 2_1:-57616379 Msa0213880:CDS
AGACCTCATCAGTGCTTACA+TGG 0.502767 2_1:+57616707 Msa0213870:intron
TTCCATATGAATATGGAAAA+GGG 0.506901 2_1:-57615865 Msa0213880:CDS
CAAGCTCTTCTCAATTGATC+CGG 0.510856 2_1:-57616293 Msa0213880:CDS
TAGCATAGTTCATCATCAAA+AGG 0.516883 2_1:+57615660 Msa0213870:intron
GTTCTTCCGATTCATGGTGA+TGG 0.517259 2_1:-57616457 Msa0213880:CDS
TGCAAGAAGCAACAATGAAA+TGG 0.518316 2_1:-57615018 Msa0213880:CDS
TGAAATTGCGTGGATTGCTT+AGG 0.528340 2_1:+57615279 Msa0213870:intron
TCCAAACTTCAAGTTTGTGA+AGG 0.531089 2_1:-57616923 Msa0213880:CDS
TTTATCCTCTTGGCAATGCA+AGG 0.531302 2_1:-57616484 Msa0213880:CDS
TTGATGATGAACTATGCTAC+CGG 0.533136 2_1:-57615656 Msa0213880:CDS
GTTACCTTGTGAGCTTGCTA+CGG 0.534317 2_1:-57614676 Msa0213880:three_prime_UTR
GGGAAATTGTGTGAGAAACA+AGG 0.534485 2_1:-57615890 Msa0213880:CDS
TTTGAACCATCACCATGAAT+CGG 0.534712 2_1:+57616451 Msa0213870:intron
TATCAACAATCCTAATTGGT+GGG 0.540325 2_1:-57616134 Msa0213880:CDS
GTCCAACCTCTCCCTTATGA+AGG 0.542052 2_1:+57616377 Msa0213870:intron
ATCCAGCCGCCCCGGTAATG+AGG 0.542170 2_1:+57617064 Msa0213870:intron
TGATCTATGGAAGAACTGGT+TGG 0.542351 2_1:-57615928 Msa0213880:CDS
ATTGTTGATATACCAGTCCA+TGG 0.546234 2_1:+57616147 Msa0213870:intron
GAGAGAACAACATGGGAAGA+AGG 0.546603 2_1:-57616181 Msa0213880:CDS
CCAAACTTCAAGTTTGTGAA+GGG 0.547634 2_1:-57616922 Msa0213880:CDS
GGAAGAACTGGTTGGATCGG+TGG 0.548201 2_1:-57615920 Msa0213880:CDS
CCGAAAATGTTAATGATGCC+TGG 0.549298 2_1:-57616082 Msa0213880:CDS
GTTAATGATGCCTGGTGGGA+TGG 0.550016 2_1:-57616074 Msa0213880:CDS
CGGGATAGTTCCGGATAAGC+CGG 0.551283 2_1:+57617019 Msa0213870:intron
GATTCACACCAATCAACGTT+AGG 0.551310 2_1:+57615755 Msa0213870:intron
GGAGCTGAAATCGAAATCTA+CGG 0.555069 2_1:+57618280 Msa0213870:intron
GAAATGCTCGTCATGGCGTA+TGG 0.556137 2_1:-57616592 Msa0213880:CDS
GGATGGAGAGACATTTCAAT+GGG 0.556466 2_1:-57616057 Msa0213880:CDS
TTCTTTCTATTCCAAAACCA+AGG 0.556902 2_1:-57615552 Msa0213880:CDS
TGCTCGTCATGGCGTATGGT+AGG 0.557344 2_1:-57616588 Msa0213880:CDS
CCCAACAACGTTGACACGGA+TGG 0.559674 2_1:+57615718 Msa0213870:intron
TTTCAATGCAGCAGGCGTGA+CGG 0.562169 2_1:-57615783 Msa0213880:CDS
AGTTATCCTTCATAAGGGAG+AGG 0.562307 2_1:-57616383 Msa0213880:CDS
GGAAATTGTGTGAGAAACAA+GGG 0.564756 2_1:-57615889 Msa0213880:CDS
CGATAGACTCAGTGATGAGA+AGG 0.564861 2_1:+57616869 Msa0213870:intron
CTATTCCAAAACCAAGGCAA+TGG 0.566752 2_1:-57615546 Msa0213880:intron
AAATGTCTCTCCATCCCACC+AGG 0.569236 2_1:+57616064 Msa0213870:intron
GGGATGGAGAGACATTTCAA+TGG 0.570949 2_1:-57616058 Msa0213880:CDS
TCATGTCTTCAATATCAGAA+TGG 0.573520 2_1:+57614644 Msa0213870:intron
GAAGACACTCCTAATTTCGC+CGG 0.574480 2_1:-57615575 Msa0213880:CDS
ACATTGATCCAAACTTCAAG+TGG 0.579567 2_1:-57615082 Msa0213880:CDS
CTCAAGTACTAATACTCGAA+TGG 0.579731 2_1:-57616005 Msa0213880:CDS
TGTCTTATTAGAAGCTTGCA+AGG 0.580370 2_1:-57616755 Msa0213880:CDS
ATATCAACAATCCTAATTGG+TGG 0.585366 2_1:-57616135 Msa0213880:CDS
TGGAGAGACAGATGAGGATG+CGG 0.589535 2_1:-57616683 Msa0213880:CDS
TGGGGCTGAAATGCTCGTCA+TGG 0.592576 2_1:-57616599 Msa0213880:CDS
TATGGAAGAACTGGTTGGAT+CGG 0.593876 2_1:-57615923 Msa0213880:CDS
GAGCCAATGCTCTTTGTAGG+TGG 0.595767 2_1:+57615977 Msa0213870:intron
GTTCCACCTACAAAGAGCAT+TGG 0.596551 2_1:-57615980 Msa0213880:CDS
TGAGGATCGTTCATCACTCG+TGG 0.597692 2_1:-57615837 Msa0213880:CDS
CCATAGATCAAGAACTTGAG+AGG 0.598084 2_1:+57615941 Msa0213870:intron
ATCAACAATCCTAATTGGTG+GGG 0.599048 2_1:-57616133 Msa0213880:CDS
GCTTGAAGAAAACCATGGAC+TGG 0.603416 2_1:-57616159 Msa0213880:CDS
GTATTAGTACTTGAGACAAA+CGG 0.603642 2_1:+57616013 Msa0213870:intron
GAGAATCTCGTTGTGGCTCA+CGG 0.604501 2_1:+57615121 Msa0213870:intron
GCTGCATTGAAAATATGAGT+TGG 0.607206 2_1:+57615794 Msa0213870:intron
GTTATCTAGCACTTATGCCG+TGG 0.611201 2_1:-57614514 None:intergenic
ATCATACTCGAATATGCACC+CGG 0.611680 2_1:+57615637 Msa0213870:intron
AACAGTAATCGAGTTTGTCG+AGG 0.615310 2_1:+57616980 Msa0213870:intron
TGATGATGAACTATGCTACC+GGG 0.618950 2_1:-57615655 Msa0213880:CDS
ATGGCAAAGAGGAACCTAAG+AGG 0.622901 2_1:-57615170 Msa0213880:CDS
TATGATGAAGCTCATCCAGA+AGG 0.624291 2_1:-57615620 Msa0213880:CDS
ATATTGGAACTAAGAAGGAA+AGG 0.626669 2_1:-57616345 Msa0213880:CDS
TTTCAATTGAGATGGCAAAG+AGG 0.627252 2_1:-57615181 Msa0213880:CDS
TTTGTATTGTGAAGATGTTG+CGG 0.630976 2_1:-57616416 Msa0213880:CDS
CATCCATGTAAGCACTGATG+AGG 0.632531 2_1:-57616710 Msa0213880:CDS
AAGTCCCAACAACGTTGACA+CGG 0.632986 2_1:+57615714 Msa0213870:intron
ATAGTTCCGGATAAGCCGGT+TGG 0.636641 2_1:+57617023 Msa0213870:intron
AATTGGTGGGGCGATGTGAG+TGG 0.640742 2_1:-57616121 Msa0213880:CDS
ATCTTGGTGATGAAATTGCG+TGG 0.642464 2_1:+57615269 Msa0213870:intron
ATATGGAAAAGGGCGTCTTG+AGG 0.643401 2_1:-57615855 Msa0213880:CDS
TGATGAGAAGGTAGTTGACA+AGG 0.649249 2_1:+57616881 Msa0213870:intron
AGAAGGCTTGAAGAAAACCA+TGG 0.651189 2_1:-57616164 Msa0213880:CDS
TGACAATGTATGCACTCTCA+GGG 0.651558 2_1:-57615324 Msa0213880:CDS
TTAACCGTAGCAAGCTCACA+AGG 0.651715 2_1:+57614672 Msa0213870:intron
GGTCTATGGAGAGACAGATG+AGG 0.654888 2_1:-57616689 Msa0213880:CDS
GAAGAGCTTGCATATATCAG+TGG 0.655262 2_1:+57616306 Msa0213870:intron
CATTGATCCAAACTTCAAGT+GGG 0.662099 2_1:-57615081 Msa0213880:CDS
TTGCCGGTAATCACAACACG+TGG 0.662580 2_1:-57616556 Msa0213880:CDS
TAGATCAAGAACTTGAGAGG+AGG 0.663040 2_1:+57615944 Msa0213870:intron
ACATCTCGAGAATCTCGTTG+TGG 0.664572 2_1:+57615114 Msa0213870:intron
AAGTACTAATACTCGAATGG+TGG 0.665787 2_1:-57616002 Msa0213880:CDS
AAATGTTAATGATGCCTGGT+GGG 0.666092 2_1:-57616078 Msa0213880:CDS
GTACTCTGCAACAAAAGCTG+GGG 0.681769 2_1:-57616617 Msa0213880:CDS
AAACATCCTCATTACCGGGG+CGG 0.681852 2_1:-57617070 Msa0213880:CDS
TTGGTCCGAGAGAACAACAT+GGG 0.688575 2_1:-57616188 Msa0213880:CDS
GAAGTAGCTGAGAAGCCTCG+TGG 0.688718 2_1:+57616650 Msa0213870:intron
ATGGTGATGGTTCAAATGTG+AGG 0.706627 2_1:-57616444 Msa0213880:CDS
GTTGGTCCGAGAGAACAACA+TGG 0.719943 2_1:-57616189 Msa0213880:CDS
TGCGGTTGTTGGAAACCACG+AGG 0.732893 2_1:-57616665 Msa0213880:CDS
AAAATGTTAATGATGCCTGG+TGG 0.736377 2_1:-57616079 Msa0213880:CDS
GTATTGTGAAGATGTTGCGG+AGG 0.741886 2_1:-57616413 Msa0213880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTGATAAGTATTATAAT+TGG - chr2_1:57618089-57618108 Msa0213880:intron 10.0%
!! AATTGATAAGTATTATAATT+GGG - chr2_1:57618090-57618109 Msa0213880:intron 10.0%
!! GAAAAAAAAAACTTACAAAT+TGG + chr2_1:57614633-57614652 Msa0213870:intron 15.0%
!! TCGATTTCAAAAAAAAAAAA+AGG + chr2_1:57617384-57617403 Msa0213870:intron 15.0%
!!! TTTTTTTTTTTTTGAAATCG+AGG - chr2_1:57617383-57617402 Msa0213880:intron 15.0%
!! ATTCATAATCATAATGAAAA+TGG + chr2_1:57617453-57617472 Msa0213870:intron 15.0%
!! ATTGATAAGTATTATAATTG+GGG - chr2_1:57618091-57618110 Msa0213880:intron 15.0%
!!! ACTAGATTTTTATTTAAATG+AGG + chr2_1:57618320-57618339 Msa0213870:intron 15.0%
!!! TTGTTTTTACTGAATTTTAG+TGG - chr2_1:57615053-57615072 Msa0213880:CDS 20.0%
!!! ATTGATATTTTGACTTGTTA+AGG - chr2_1:57615118-57615137 Msa0213880:CDS 20.0%
!! ACATTCAATTTCTATACTAA+AGG + chr2_1:57615586-57615605 Msa0213870:intron 20.0%
!! ACAGAAACTAAAATAAAACA+TGG + chr2_1:57615648-57615667 Msa0213870:intron 20.0%
!!! TTTAGTTTCTGTGATTATTT+AGG - chr2_1:57615656-57615675 Msa0213880:CDS 20.0%
!!! ATTTTGATTATATTTGTCTG+TGG - chr2_1:57615688-57615707 Msa0213880:CDS 20.0%
!!! ATTATTTTTTTTGCAGAAGT+TGG - chr2_1:57615737-57615756 Msa0213880:CDS 20.0%
!! AAAAAAAAAAGGAATCAGAA+TGG + chr2_1:57617373-57617392 Msa0213870:intron 20.0%
!! TTGTGTTTAGAAGATAATAT+TGG - chr2_1:57618066-57618085 Msa0213880:intron 20.0%
!!! AATGAGTGTTTTTTATGATC+TGG - chr2_1:57614759-57614778 Msa0213880:three_prime_UTR 25.0%
!!! ATGAGTGTTTTTTATGATCT+GGG - chr2_1:57614760-57614779 Msa0213880:three_prime_UTR 25.0%
! TTTCATCATAAACAATCACA+TGG + chr2_1:57614848-57614867 Msa0213870:intron 25.0%
!!! GATGTGTGTTTTTATTGTTT+AGG - chr2_1:57614985-57615004 Msa0213880:CDS 25.0%
!!! TTTTACTGAATTTTAGTGGT+TGG - chr2_1:57615057-57615076 Msa0213880:CDS 25.0%
!!! ATTTTGACTTGTTAAGGAAA+TGG - chr2_1:57615124-57615143 Msa0213880:CDS 25.0%
!! TCAAGAAAATGTGTTACTAT+AGG - chr2_1:57615148-57615167 Msa0213880:CDS 25.0%
! GATCTGTATCTTAAGATAAA+TGG + chr2_1:57615237-57615256 Msa0213870:intron 25.0%
! ATAGTAAACACAGTAAGTTT+AGG + chr2_1:57615327-57615346 Msa0213870:intron 25.0%
! ATAAGAAGTTAACAAGATCA+TGG + chr2_1:57615548-57615567 Msa0213870:intron 25.0%
!!! ACTAAAGGTAAATTGACTTT+TGG + chr2_1:57615571-57615590 Msa0213870:intron 25.0%
!! TTCTGTGATTATTTAGGATT+AGG - chr2_1:57615662-57615681 Msa0213880:CDS 25.0%
!!! AATTTTGGAATCAACTTTTC+AGG + chr2_1:57616352-57616371 Msa0213870:intron 25.0%
!!! TTTTGAAGTTATCCTTCATA+AGG - chr2_1:57616465-57616484 Msa0213880:CDS 25.0%
!! TTTGAAGTTATCCTTCATAA+GGG - chr2_1:57616466-57616485 Msa0213880:CDS 25.0%
! TTACAATATTGGAACTAAGA+AGG - chr2_1:57616504-57616523 Msa0213880:CDS 25.0%
! AAGTATCTCTGATCATTAAA+CGG + chr2_1:57616616-57616635 Msa0213870:intron 25.0%
! ATTCCATATGAATATGGAAA+AGG - chr2_1:57616988-57617007 Msa0213880:CDS 25.0%
! TTCCATATGAATATGGAAAA+GGG - chr2_1:57616989-57617008 Msa0213880:CDS 25.0%
! TTTATTGTAACGTGAAATCT+TGG + chr2_1:57617604-57617623 Msa0213870:intron 25.0%
! TAAACACAACAATAACAGTA+TGG + chr2_1:57618055-57618074 Msa0213870:intron 25.0%
! TAAGTATTATAATTGGGGTT+AGG - chr2_1:57618096-57618115 Msa0213880:intron 25.0%
AATCTACGGAGATTTAGATT+TGG + chr2_1:57614563-57614582 Msa0213870:intron 30.0%
AAGAAGTGAAGAGAGAAAAT+AGG + chr2_1:57614598-57614617 Msa0213870:intron 30.0%
ACTTACAAATTGGTACGAAA+AGG + chr2_1:57614623-57614642 Msa0213870:intron 30.0%
TTCTTTCATTGATCTTGTGA+TGG - chr2_1:57614686-57614705 Msa0213880:three_prime_UTR 30.0%
CAAAATCCAAATCATCAACT+GGG + chr2_1:57614712-57614731 Msa0213870:intron 30.0%
ACAAAATCCAAATCATCAAC+TGG + chr2_1:57614713-57614732 Msa0213870:intron 30.0%
GAATCTGATTCATGAAATTG+TGG - chr2_1:57614963-57614982 Msa0213880:CDS 30.0%
AAAACTCACACAAGTTAAAG+TGG + chr2_1:57615193-57615212 Msa0213870:intron 30.0%
TGGGATTCATCATAATGAAT+CGG + chr2_1:57615283-57615302 Msa0213870:intron 30.0%
TCGAGTCATTACAATGAATT+GGG + chr2_1:57615302-57615321 Msa0213870:intron 30.0%
ATCGAGTCATTACAATGAAT+TGG + chr2_1:57615303-57615322 Msa0213870:intron 30.0%
TTCACCAAGAACAACATTTA+TGG - chr2_1:57616070-57616089 Msa0213880:CDS 30.0%
AGTACCATAAATGTTGTTCT+TGG + chr2_1:57616077-57616096 Msa0213870:intron 30.0%
!! ACTTTTCAGGAAACTGATTT+GGG + chr2_1:57616339-57616358 Msa0213870:intron 30.0%
!! AACTTTTCAGGAAACTGATT+TGG + chr2_1:57616340-57616359 Msa0213870:intron 30.0%
GATTCCAAAATTTATCCTCT+TGG - chr2_1:57616360-57616379 Msa0213880:CDS 30.0%
! ATTGCCAAGAGGATAAATTT+TGG + chr2_1:57616367-57616386 Msa0213870:intron 30.0%
TTTGTATTGTGAAGATGTTG+CGG - chr2_1:57616438-57616457 Msa0213880:CDS 30.0%
GTTGGACATGTTTACAATAT+TGG - chr2_1:57616493-57616512 Msa0213880:CDS 30.0%
ATATTGGAACTAAGAAGGAA+AGG - chr2_1:57616509-57616528 Msa0213880:CDS 30.0%
!! ACAAATTTTATGCTAGTCTC+CGG + chr2_1:57616583-57616602 Msa0213870:intron 30.0%
! GATCAAAAGTTGAAGGTTTT+GGG - chr2_1:57616643-57616662 Msa0213880:CDS 30.0%
GGTATATCAACAATCCTAAT+TGG - chr2_1:57616716-57616735 Msa0213880:CDS 30.0%
ATATCAACAATCCTAATTGG+TGG - chr2_1:57616719-57616738 Msa0213880:CDS 30.0%
TATCAACAATCCTAATTGGT+GGG - chr2_1:57616720-57616739 Msa0213880:CDS 30.0%
! ATCATTAACATTTTCGGATG+AGG + chr2_1:57616769-57616788 Msa0213870:intron 30.0%
GTATTAGTACTTGAGACAAA+CGG + chr2_1:57616844-57616863 Msa0213870:intron 30.0%
TAGCATAGTTCATCATCAAA+AGG + chr2_1:57617197-57617216 Msa0213870:intron 30.0%
TTCTTTCTATTCCAAAACCA+AGG - chr2_1:57617302-57617321 Msa0213880:intron 30.0%
! TTGAACAAGATTTGTTCAAC+AGG + chr2_1:57617424-57617443 Msa0213870:intron 30.0%
TTAATCTGTGAATGTTTCTC+AGG - chr2_1:57617485-57617504 Msa0213880:intron 30.0%
TCTTCCTATTTCAATTGAGA+TGG - chr2_1:57617665-57617684 Msa0213880:intron 30.0%
TTTGCCATCTCAATTGAAAT+AGG + chr2_1:57617672-57617691 Msa0213870:intron 30.0%
TGGGAATTCATTCTTCAATT+TGG + chr2_1:57617868-57617887 Msa0213870:intron 30.0%
CTTGATAAGTGATTCTTTGA+TGG + chr2_1:57617901-57617920 Msa0213870:intron 30.0%
! GCTACCAAATTTTTGTGTTT+TGG - chr2_1:57617991-57618010 Msa0213880:intron 30.0%
GTAGCCAAAACACAAAAATT+TGG + chr2_1:57617998-57618017 Msa0213870:intron 30.0%
ATTATAATTGGGGTTAGGTA+TGG - chr2_1:57618101-57618120 Msa0213880:intron 30.0%
TCATGTCTTCAATATCAGAA+TGG + chr2_1:57618213-57618232 Msa0213870:intron 30.0%
TGTGAGTTATGTTTGTGTAT+TGG - chr2_1:57618263-57618282 Msa0213880:five_prime_UTR 30.0%
AAAAAAACAGAGCAAGAGTG+AGG + chr2_1:57614655-57614674 Msa0213870:intron 35.0%
ATTGACTACACAAAGTTGAC+AGG + chr2_1:57615362-57615381 Msa0213870:intron 35.0%
!!! TTTTGCAGAAGTTGGTGATA+TGG - chr2_1:57615745-57615764 Msa0213880:CDS 35.0%
!!! GGTAATGAGGATGTTTTTTG+GGG + chr2_1:57615780-57615799 Msa0213870:intron 35.0%
!!! CGGTAATGAGGATGTTTTTT+GGG + chr2_1:57615781-57615800 Msa0213870:intron 35.0%
CCAAAAAACATCCTCATTAC+CGG - chr2_1:57615779-57615798 Msa0213880:CDS 35.0%
CAAAAAACATCCTCATTACC+GGG - chr2_1:57615780-57615799 Msa0213880:CDS 35.0%
AAAAAACATCCTCATTACCG+GGG - chr2_1:57615781-57615800 Msa0213880:CDS 35.0%
! AGGACAACAATTTTGTAGTC+GGG + chr2_1:57615857-57615876 Msa0213870:intron 35.0%
! GAGGACAACAATTTTGTAGT+CGG + chr2_1:57615858-57615877 Msa0213870:intron 35.0%
AAGTTTGGAGATGATCTTGA+AGG + chr2_1:57615920-57615939 Msa0213870:intron 35.0%
! TCCAAACTTCAAGTTTGTGA+AGG - chr2_1:57615931-57615950 Msa0213880:CDS 35.0%
! CCAAACTTCAAGTTTGTGAA+GGG - chr2_1:57615932-57615951 Msa0213880:CDS 35.0%
! TGTCTTATTAGAAGCTTGCA+AGG - chr2_1:57616099-57616118 Msa0213880:CDS 35.0%
TTTGAACCATCACCATGAAT+CGG + chr2_1:57616406-57616425 Msa0213870:intron 35.0%
TCTTGACGATCAAAAGTTGA+AGG - chr2_1:57616636-57616655 Msa0213880:CDS 35.0%
! CGATCAAAAGTTGAAGGTTT+TGG - chr2_1:57616642-57616661 Msa0213880:CDS 35.0%
!!! AAAAGTTGAAGGTTTTGGGT+TGG - chr2_1:57616647-57616666 Msa0213880:CDS 35.0%
ATTGTTGATATACCAGTCCA+TGG + chr2_1:57616710-57616729 Msa0213870:intron 35.0%
ATCAACAATCCTAATTGGTG+GGG - chr2_1:57616721-57616740 Msa0213880:CDS 35.0%
! CCAGGCATCATTAACATTTT+CGG + chr2_1:57616775-57616794 Msa0213870:intron 35.0%
AAAATGTTAATGATGCCTGG+TGG - chr2_1:57616775-57616794 Msa0213880:CDS 35.0%
AAATGTTAATGATGCCTGGT+GGG - chr2_1:57616776-57616795 Msa0213880:CDS 35.0%
CTCAAGTACTAATACTCGAA+TGG - chr2_1:57616849-57616868 Msa0213880:CDS 35.0%
AAGTACTAATACTCGAATGG+TGG - chr2_1:57616852-57616871 Msa0213880:CDS 35.0%
TTCTTGATCTATGGAAGAAC+TGG - chr2_1:57616922-57616941 Msa0213880:CDS 35.0%
GGAAATTGTGTGAGAAACAA+GGG - chr2_1:57616965-57616984 Msa0213880:CDS 35.0%
CAAGGGATTCCATATGAATA+TGG - chr2_1:57616982-57617001 Msa0213880:CDS 35.0%
GCTGCATTGAAAATATGAGT+TGG + chr2_1:57617063-57617082 Msa0213870:intron 35.0%
! ACTCATATTTTCAATGCAGC+AGG - chr2_1:57617063-57617082 Msa0213880:CDS 35.0%
!! TTGATGATGAACTATGCTAC+CGG - chr2_1:57617198-57617217 Msa0213880:intron 35.0%
!!! GGTTTTGGAATAGAAAGAAC+CGG + chr2_1:57617301-57617320 Msa0213870:intron 35.0%
TTGCTTAGGTCAGATGAAAT+TGG + chr2_1:57617564-57617583 Msa0213870:intron 35.0%
TTTCAATTGAGATGGCAAAG+AGG - chr2_1:57617673-57617692 Msa0213880:intron 35.0%
ACATTGATCCAAACTTCAAG+TGG - chr2_1:57617772-57617791 Msa0213880:intron 35.0%
CATTGATCCAAACTTCAAGT+GGG - chr2_1:57617773-57617792 Msa0213880:intron 35.0%
TGCAAGAAGCAACAATGAAA+TGG - chr2_1:57617836-57617855 Msa0213880:intron 35.0%
CTTTGATGGAAAGCAATTCT+GGG + chr2_1:57617887-57617906 Msa0213870:intron 35.0%
TCTTTGATGGAAAGCAATTC+TGG + chr2_1:57617888-57617907 Msa0213870:intron 35.0%
GGAGCTGAAATCGAAATCTA+CGG + chr2_1:57614577-57614596 Msa0213870:intron 40.0%
CACAAAGTTGACAGGAAAAG+TGG + chr2_1:57615354-57615373 Msa0213870:intron 40.0%
TCGAGATTTCGATCTCGAAT+CGG + chr2_1:57615517-57615536 Msa0213870:intron 40.0%
!!! CCGGTAATGAGGATGTTTTT+TGG + chr2_1:57615782-57615801 Msa0213870:intron 40.0%
! TTTTGTAGTCGGGATAGTTC+CGG + chr2_1:57615847-57615866 Msa0213870:intron 40.0%
AACAGTAATCGAGTTTGTCG+AGG + chr2_1:57615877-57615896 Msa0213870:intron 40.0%
GAGATGATCTTGAAGGAATG+AGG + chr2_1:57615913-57615932 Msa0213870:intron 40.0%
CCCTTCACAAACTTGAAGTT+TGG + chr2_1:57615935-57615954 Msa0213870:intron 40.0%
TGATGAGAAGGTAGTTGACA+AGG + chr2_1:57615976-57615995 Msa0213870:intron 40.0%
! ACTCATGTCGACAACTCTTT+TGG - chr2_1:57616034-57616053 Msa0213880:CDS 40.0%
TTAGAAGCTTGCAAGGTAAC+TGG - chr2_1:57616106-57616125 Msa0213880:CDS 40.0%
TTTCCACGTGTTGTGATTAC+CGG + chr2_1:57616304-57616323 Msa0213870:intron 40.0%
ACACGTGGAAACAATGTCTA+TGG - chr2_1:57616313-57616332 Msa0213880:CDS 40.0%
TTTATCCTCTTGGCAATGCA+AGG - chr2_1:57616370-57616389 Msa0213880:CDS 40.0%
GGAAAAGTTCTTCCGATTCA+TGG - chr2_1:57616391-57616410 Msa0213880:CDS 40.0%
!! ATGGTGATGGTTCAAATGTG+AGG - chr2_1:57616410-57616429 Msa0213880:CDS 40.0%
AGTTATCCTTCATAAGGGAG+AGG - chr2_1:57616471-57616490 Msa0213880:CDS 40.0%
GAAGAGCTTGCATATATCAG+TGG + chr2_1:57616551-57616570 Msa0213870:intron 40.0%
CAAGCTCTTCTCAATTGATC+CGG - chr2_1:57616561-57616580 Msa0213880:CDS 40.0%
TTCTTCCCATGTTGTTCTCT+CGG + chr2_1:57616674-57616693 Msa0213870:intron 40.0%
AGAAGGCTTGAAGAAAACCA+TGG - chr2_1:57616690-57616709 Msa0213880:CDS 40.0%
CCGAAAATGTTAATGATGCC+TGG - chr2_1:57616772-57616791 Msa0213880:CDS 40.0%
GGATGGAGAGACATTTCAAT+GGG - chr2_1:57616797-57616816 Msa0213880:CDS 40.0%
TAGATCAAGAACTTGAGAGG+AGG + chr2_1:57616913-57616932 Msa0213870:intron 40.0%
CCATAGATCAAGAACTTGAG+AGG + chr2_1:57616916-57616935 Msa0213870:intron 40.0%
CCTCTCAAGTTCTTGATCTA+TGG - chr2_1:57616913-57616932 Msa0213880:CDS 40.0%
TGATCTATGGAAGAACTGGT+TGG - chr2_1:57616926-57616945 Msa0213880:CDS 40.0%
TATGGAAGAACTGGTTGGAT+CGG - chr2_1:57616931-57616950 Msa0213880:CDS 40.0%
GGGAAATTGTGTGAGAAACA+AGG - chr2_1:57616964-57616983 Msa0213880:CDS 40.0%
! CGCCCTTTTCCATATTCATA+TGG + chr2_1:57616994-57617013 Msa0213870:intron 40.0%
GATTCACACCAATCAACGTT+AGG + chr2_1:57617102-57617121 Msa0213870:intron 40.0%
CGTTGTTGGGACTTTAACAT+TGG - chr2_1:57617149-57617168 Msa0213880:intron 40.0%
! TGATGATGAACTATGCTACC+GGG - chr2_1:57617199-57617218 Msa0213880:intron 40.0%
ATCATACTCGAATATGCACC+CGG + chr2_1:57617220-57617239 Msa0213870:intron 40.0%
TATGATGAAGCTCATCCAGA+AGG - chr2_1:57617234-57617253 Msa0213880:intron 40.0%
TAGAAAGAACCGGCGAAATT+AGG + chr2_1:57617291-57617310 Msa0213870:intron 40.0%
CTATTCCAAAACCAAGGCAA+TGG - chr2_1:57617308-57617327 Msa0213880:intron 40.0%
ATGACAATGTATGCACTCTC+AGG - chr2_1:57617529-57617548 Msa0213880:intron 40.0%
TGACAATGTATGCACTCTCA+GGG - chr2_1:57617530-57617549 Msa0213880:intron 40.0%
! TGAAATTGCGTGGATTGCTT+AGG + chr2_1:57617578-57617597 Msa0213870:intron 40.0%
!! ATCTTGGTGATGAAATTGCG+TGG + chr2_1:57617588-57617607 Msa0213870:intron 40.0%
! TCCAAACAGCATGACTGTTT+TGG - chr2_1:57617635-57617654 Msa0213880:intron 40.0%
TCCAAAACAGTCATGCTGTT+TGG + chr2_1:57617639-57617658 Msa0213870:intron 40.0%
TGAAGTTCCAGATACCTCTT+AGG + chr2_1:57617701-57617720 Msa0213870:intron 40.0%
! ATCTGGAACTTCACAAATCC+TGG - chr2_1:57617708-57617727 Msa0213880:intron 40.0%
AAGTTAGCCCACTTGAAGTT+TGG + chr2_1:57617783-57617802 Msa0213870:intron 40.0%
TCTTGCAGCAACTATCACTT+TGG + chr2_1:57617823-57617842 Msa0213870:intron 40.0%
!! TGATGGCCCAGTTGATGATT+TGG - chr2_1:57614703-57614722 Msa0213880:three_prime_UTR 45.0%
CGATAGACTCAGTGATGAGA+AGG + chr2_1:57615988-57616007 Msa0213870:intron 45.0%
!! CATCCATGTAAGCACTGATG+AGG - chr2_1:57616144-57616163 Msa0213880:CDS 45.0%
AGACCTCATCAGTGCTTACA+TGG + chr2_1:57616150-57616169 Msa0213870:intron 45.0%
!! GTAAGCACTGATGAGGTCTA+TGG - chr2_1:57616151-57616170 Msa0213880:CDS 45.0%
GTTGCAGAGTACGGATTTGT+TGG + chr2_1:57616229-57616248 Msa0213870:intron 45.0%
! CCAGCTTTTGTTGCAGAGTA+CGG + chr2_1:57616238-57616257 Msa0213870:intron 45.0%
CGTACTCTGCAACAAAAGCT+GGG - chr2_1:57616236-57616255 Msa0213880:CDS 45.0%
GTACTCTGCAACAAAAGCTG+GGG - chr2_1:57616237-57616256 Msa0213880:CDS 45.0%
ATGGCGTATGGTAGGTCTTA+TGG - chr2_1:57616274-57616293 Msa0213880:CDS 45.0%
! TGGTAGGTCTTATGGATTGC+CGG - chr2_1:57616282-57616301 Msa0213880:CDS 45.0%
! CTTTTCCTTGCATTGCCAAG+AGG + chr2_1:57616378-57616397 Msa0213870:intron 45.0%
GTTCTTCCGATTCATGGTGA+TGG - chr2_1:57616397-57616416 Msa0213880:CDS 45.0%
GTATTGTGAAGATGTTGCGG+AGG - chr2_1:57616441-57616460 Msa0213880:CDS 45.0%
ATCCTTCATAAGGGAGAGGT+TGG - chr2_1:57616475-57616494 Msa0213880:CDS 45.0%
TTGGTCCGAGAGAACAACAT+GGG - chr2_1:57616666-57616685 Msa0213880:CDS 45.0%
GAGAGAACAACATGGGAAGA+AGG - chr2_1:57616673-57616692 Msa0213880:CDS 45.0%
GCTTGAAGAAAACCATGGAC+TGG - chr2_1:57616695-57616714 Msa0213880:CDS 45.0%
GGGATGGAGAGACATTTCAA+TGG - chr2_1:57616796-57616815 Msa0213880:CDS 45.0%
! GTTCCACCTACAAAGAGCAT+TGG - chr2_1:57616874-57616893 Msa0213880:CDS 45.0%
GAAGAGCCAATGCTCTTTGT+AGG + chr2_1:57616883-57616902 Msa0213870:intron 45.0%
!! ATATGGAAAAGGGCGTCTTG+AGG - chr2_1:57616999-57617018 Msa0213880:CDS 45.0%
AAGTCCCAACAACGTTGACA+CGG + chr2_1:57617143-57617162 Msa0213870:intron 45.0%
ATCCAGAAGGTTCAGGCATT+GGG - chr2_1:57617247-57617266 Msa0213880:intron 45.0%
!! AGGTTCAGGCATTGGGTTTA+AGG - chr2_1:57617254-57617273 Msa0213880:intron 45.0%
GAAGACACTCCTAATTTCGC+CGG - chr2_1:57617279-57617298 Msa0213880:intron 45.0%
! GCTTACCATTGCCTTGGTTT+TGG + chr2_1:57617316-57617335 Msa0213870:intron 45.0%
! TAGCTAGCTTACCATTGCCT+TGG + chr2_1:57617322-57617341 Msa0213870:intron 45.0%
ATGGCAAAGAGGAACCTAAG+AGG - chr2_1:57617684-57617703 Msa0213880:intron 45.0%
!! AGAGGAACCTAAGAGGTATC+TGG - chr2_1:57617691-57617710 Msa0213880:intron 45.0%
ACATCTCGAGAATCTCGTTG+TGG + chr2_1:57617743-57617762 Msa0213870:intron 45.0%
!! GTTACCTTGTGAGCTTGCTA+CGG - chr2_1:57618178-57618197 Msa0213880:intron 45.0%
TTAACCGTAGCAAGCTCACA+AGG + chr2_1:57618185-57618204 Msa0213870:intron 45.0%
AAACATCCTCATTACCGGGG+CGG - chr2_1:57615784-57615803 Msa0213880:CDS 50.0%
TTGCGTCTCATGTTGCCAAC+CGG - chr2_1:57615816-57615835 Msa0213880:CDS 50.0%
! ATGTTGCCAACCGGCTTATC+CGG - chr2_1:57615825-57615844 Msa0213880:CDS 50.0%
ATAGTTCCGGATAAGCCGGT+TGG + chr2_1:57615834-57615853 Msa0213870:intron 50.0%
GGTCTATGGAGAGACAGATG+AGG - chr2_1:57616165-57616184 Msa0213880:CDS 50.0%
TGGAGAGACAGATGAGGATG+CGG - chr2_1:57616171-57616190 Msa0213880:CDS 50.0%
ACAGATGAGGATGCGGTTGT+TGG - chr2_1:57616178-57616197 Msa0213880:CDS 50.0%
CCGTACTCTGCAACAAAAGC+TGG - chr2_1:57616235-57616254 Msa0213880:CDS 50.0%
GAAATGCTCGTCATGGCGTA+TGG - chr2_1:57616262-57616281 Msa0213880:CDS 50.0%
TTGCCGGTAATCACAACACG+TGG - chr2_1:57616298-57616317 Msa0213880:CDS 50.0%
GTCCAACCTCTCCCTTATGA+AGG + chr2_1:57616480-57616499 Msa0213870:intron 50.0%
GTTGGTCCGAGAGAACAACA+TGG - chr2_1:57616665-57616684 Msa0213880:CDS 50.0%
GTTAATGATGCCTGGTGGGA+TGG - chr2_1:57616780-57616799 Msa0213880:CDS 50.0%
AAATGTCTCTCCATCCCACC+AGG + chr2_1:57616793-57616812 Msa0213870:intron 50.0%
GAGCCAATGCTCTTTGTAGG+TGG + chr2_1:57616880-57616899 Msa0213870:intron 50.0%
!! GTTGGATCGGTGGTTTGCTT+GGG - chr2_1:57616944-57616963 Msa0213880:CDS 50.0%
TGAGGATCGTTCATCACTCG+TGG - chr2_1:57617017-57617036 Msa0213880:CDS 50.0%
TTTCAATGCAGCAGGCGTGA+CGG - chr2_1:57617071-57617090 Msa0213880:CDS 50.0%
CGGGAAGACCTAACGTTGAT+TGG - chr2_1:57617091-57617110 Msa0213880:CDS 50.0%
ACCATCCGTGTCAACGTTGT+TGG - chr2_1:57617135-57617154 Msa0213880:intron 50.0%
CCATCCGTGTCAACGTTGTT+GGG - chr2_1:57617136-57617155 Msa0213880:intron 50.0%
GAAGCTCATCCAGAAGGTTC+AGG - chr2_1:57617240-57617259 Msa0213880:intron 50.0%
CATCCAGAAGGTTCAGGCAT+TGG - chr2_1:57617246-57617265 Msa0213880:intron 50.0%
AACCCAATGCCTGAACCTTC+TGG + chr2_1:57617252-57617271 Msa0213870:intron 50.0%
GAGAATCTCGTTGTGGCTCA+CGG + chr2_1:57617736-57617755 Msa0213870:intron 50.0%
CGGGATAGTTCCGGATAAGC+CGG + chr2_1:57615838-57615857 Msa0213870:intron 55.0%
TGCGGTTGTTGGAAACCACG+AGG - chr2_1:57616189-57616208 Msa0213880:CDS 55.0%
GAAGTAGCTGAGAAGCCTCG+TGG + chr2_1:57616207-57616226 Msa0213870:intron 55.0%
TGGGGCTGAAATGCTCGTCA+TGG - chr2_1:57616255-57616274 Msa0213880:CDS 55.0%
TGCTCGTCATGGCGTATGGT+AGG - chr2_1:57616266-57616285 Msa0213880:CDS 55.0%
CTCACATCGCCCCACCAATT+AGG + chr2_1:57616733-57616752 Msa0213870:intron 55.0%
AATTGGTGGGGCGATGTGAG+TGG - chr2_1:57616733-57616752 Msa0213880:CDS 55.0%
GGAAGAACTGGTTGGATCGG+TGG - chr2_1:57616934-57616953 Msa0213880:CDS 55.0%
!! GGTTGGATCGGTGGTTTGCT+TGG - chr2_1:57616943-57616962 Msa0213880:CDS 55.0%
TTCAATGCAGCAGGCGTGAC+GGG - chr2_1:57617072-57617091 Msa0213880:CDS 55.0%
CCCAACAACGTTGACACGGA+TGG + chr2_1:57617139-57617158 Msa0213870:intron 55.0%
ATCCTCATTACCGGGGCGGC+TGG - chr2_1:57615788-57615807 Msa0213880:CDS 65.0%
ATCCAGCCGCCCCGGTAATG+AGG + chr2_1:57615793-57615812 Msa0213870:intron 65.0%
CGCAATGAATCCAGCCGCCC+CGG + chr2_1:57615801-57615820 Msa0213870:intron 65.0%
TCGTTGTGGCTCACGGCGCC+AGG + chr2_1:57617729-57617748 Msa0213870:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 57614515 57618361 57614515 ID=Msa0213880;Name=Msa0213880
chr2_1 mRNA 57614515 57618361 57614515 ID=Msa0213880-mRNA-1;Parent=Msa0213880;Name=Msa0213880-mRNA-1;_AED=0.04;_eAED=0.04;_QI=133|1|1|1|0.5|0.33|3|408|670
chr2_1 exon 57614515 57615369 57614515 ID=Msa0213880-mRNA-1:exon:15945;Parent=Msa0213880-mRNA-1
chr2_1 exon 57615547 57617123 57615547 ID=Msa0213880-mRNA-1:exon:15944;Parent=Msa0213880-mRNA-1
chr2_1 exon 57618240 57618361 57618240 ID=Msa0213880-mRNA-1:exon:15943;Parent=Msa0213880-mRNA-1
chr2_1 five_prime_UTR 57618240 57618361 57618240 ID=Msa0213880-mRNA-1:five_prime_utr;Parent=Msa0213880-mRNA-1
chr2_1 five_prime_UTR 57617113 57617123 57617113 ID=Msa0213880-mRNA-1:five_prime_utr;Parent=Msa0213880-mRNA-1
chr2_1 CDS 57615547 57617112 57615547 ID=Msa0213880-mRNA-1:cds;Parent=Msa0213880-mRNA-1
chr2_1 CDS 57614923 57615369 57614923 ID=Msa0213880-mRNA-1:cds;Parent=Msa0213880-mRNA-1
chr2_1 three_prime_UTR 57614515 57614922 57614515 ID=Msa0213880-mRNA-1:three_prime_utr;Parent=Msa0213880-mRNA-1
Gene Sequence

>Msa0213880

ATGGCAACGCACACCCCAAAAAACATCCTCATTACCGGGGCGGCTGGATTCATTGCGTCTCATGTTGCCAACCGGCTTATCCGGAACTATCCCGACTACAAAATTGTTGTCCTCGACAAACTCGATTACTGTTCTAATCTGAAGAACCTCATTCCTTCAAGATCATCTCCAAACTTCAAGTTTGTGAAGGGAGACATTGAAAGTGCTGACCTTGTCAACTACCTTCTCATCACTGAGTCTATCGACACAATTATGCACTTTGCTGCTCAAACTCATGTCGACAACTCTTTTGGTAACAGCTTTGAGTTCACCAAGAACAACATTTATGGTACTCATGTCTTATTAGAAGCTTGCAAGGTAACTGGTCAGATCAAAAGATTCATCCATGTAAGCACTGATGAGGTCTATGGAGAGACAGATGAGGATGCGGTTGTTGGAAACCACGAGGCTTCTCAGCTACTTCCAACAAATCCGTACTCTGCAACAAAAGCTGGGGCTGAAATGCTCGTCATGGCGTATGGTAGGTCTTATGGATTGCCGGTAATCACAACACGTGGAAACAATGTCTATGGCCCAAATCAGTTTCCTGAAAAGTTGATTCCAAAATTTATCCTCTTGGCAATGCAAGGAAAAGTTCTTCCGATTCATGGTGATGGTTCAAATGTGAGGAGTTATTTGTATTGTGAAGATGTTGCGGAGGCTTTTGAAGTTATCCTTCATAAGGGAGAGGTTGGACATGTTTACAATATTGGAACTAAGAAGGAAAGGAGAGTTATTGATGTAGCCACTGATATATGCAAGCTCTTCTCAATTGATCCGGAGACTAGCATAAAATTTGTAGAGAACAGACCGTTTAATGATCAGAGATACTTTCTTGACGATCAAAAGTTGAAGGTTTTGGGTTGGTCCGAGAGAACAACATGGGAAGAAGGCTTGAAGAAAACCATGGACTGGTATATCAACAATCCTAATTGGTGGGGCGATGTGAGTGGTGCATTGCTTCCTCATCCGAAAATGTTAATGATGCCTGGTGGGATGGAGAGACATTTCAATGGGTCTGAAGAAGAAAATTCTGCACCGTTTGTCTCAAGTACTAATACTCGAATGGTGGTTCCACCTACAAAGAGCATTGGCTCTTCGCAGAAACCTCCTCTCAAGTTCTTGATCTATGGAAGAACTGGTTGGATCGGTGGTTTGCTTGGGAAATTGTGTGAGAAACAAGGGATTCCATATGAATATGGAAAAGGGCGTCTTGAGGATCGTTCATCACTCGTGGCTGATATTCAGAACGTGAAGCCAACTCATATTTTCAATGCAGCAGGCGTGACGGGAAGACCTAACGTTGATTGGTGTGAATCTCATAAAACTGAAACCATCCGTGTCAACGTTGTTGGGACTTTAACATTGGCTGATGTAAGCAGAGAGCATAACCTTTTGATGATGAACTATGCTACCGGGTGCATATTCGAGTATGATGAAGCTCATCCAGAAGGTTCAGGCATTGGGTTTAAGGAAGAAGACACTCCTAATTTCGCCGGTTCTTTCTATTCCAAAACCAAGGCAATGGTTGAAGAGCTTTTGAAAGACTATGACAATGTATGCACTCTCAGGGTTCGCATGCCAATTTCATCTGACCTAAGCAATCCACGCAATTTCATCACCAAGATTTCACGTTACAATAAAGTAGTCAACATTCCAAACAGCATGACTGTTTTGGACGAACTTCTTCCTATTTCAATTGAGATGGCAAAGAGGAACCTAAGAGGTATCTGGAACTTCACAAATCCTGGCGCCGTGAGCCACAACGAGATTCTCGAGATGTACAAAGACTACATTGATCCAAACTTCAAGTGGGCTAACTTCACACTTGAAGAGCAAGCCAAAGTGATAGTTGCTGCAAGAAGCAACAATGAAATGGATGCATCCAAATTGAAGAATGAATTCCCAGAATTGCTTTCCATCAAAGAATCACTTATCAAGTACGTCTTTGAGCTAAACAAGAAAAGTGCTTAA

Protein sequence

>Msa0213880

MATHTPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLIPSRSSPNFKFVKGDIESADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKVLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVATDICKLFSIDPETSIKFVENRPFNDQRYFLDDQKLKVLGWSERTTWEEGLKKTMDWYINNPNWWGDVSGALLPHPKMLMMPGGMERHFNGSEEENSAPFVSSTNTRMVVPPTKSIGSSQKPPLKFLIYGRTGWIGGLLGKLCEKQGIPYEYGKGRLEDRSSLVADIQNVKPTHIFNAAGVTGRPNVDWCESHKTETIRVNVVGTLTLADVSREHNLLMMNYATGCIFEYDEAHPEGSGIGFKEEDTPNFAGSFYSKTKAMVEELLKDYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYKDYIDPNFKWANFTLEEQAKVIVAARSNNEMDASKLKNEFPELLSIKESLIKYVFELNKKSA*