AlfalfaGEDB | Msa0214090

M. sativa cultivar zhongmu-4 / Msa0214090

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0214090	Msa1367750	0.811687	6.181679e-51	-8.615850e-47
Msa0214090	Msa1389400	0.801795	7.608128e-49	-8.615850e-47
Msa0214090	Msa1414690	0.813531	2.441798e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 41 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCAAATTAAAAGGGAT+TGG	0.439201	2_1:-58262628	None:intergenic
AAATGTCCTGATTGGTAGAG+TGG	0.637316	2_1:-58263508	None:intergenic
AAATTAAAAGGGATTGGATC+AGG	0.497048	2_1:-58262622	None:intergenic
AAATTTAATAACGTGTGTTG+TGG	0.588206	2_1:+58265289	Msa0214090:three_prime_UTR
AATGAAGAATTTCAAGATTT+TGG	0.081409	2_1:+58265594	Msa0214090:three_prime_UTR
ACAACAGGTACATCCACCAA+AGG	0.675199	2_1:-58262726	None:intergenic
ACTTCACCACTCTACCAATC+AGG	0.496727	2_1:+58263502	Msa0214090:five_prime_UTR
ACTTTATTGTTGTGTCTCTT+TGG	0.303592	2_1:+58265465	Msa0214090:three_prime_UTR
AGAAGTACGAGTTCTGAAAA+AGG	0.395320	2_1:+58265109	Msa0214090:five_prime_UTR
AGAGAAATATTCTATGTAGG+TGG	0.633840	2_1:+58265355	Msa0214090:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTAAAAGGGATTGGATC+AGG	-	chr2_1:58262625-58262644	None:intergenic	30.0%
AAATCTAGCAGCTAATACAA+AGG	-	chr2_1:58262840-58262859	None:intergenic	30.0%
AGAAGAAATACAAAGCAAAC+GGG	-	chr2_1:58262934-58262953	None:intergenic	30.0%
CAGAAGAAATACAAAGCAAA+CGG	-	chr2_1:58262935-58262954	None:intergenic	30.0%
ATAAAACAGAATCAGCCAAA+AGG	-	chr2_1:58263152-58263171	None:intergenic	30.0%
TAACCACCTAATTACTTTAG+TGG	+	chr2_1:58263242-58263261	Msa0214090:intron	30.0%
TAACCACTAAAGTAATTAGG+TGG	-	chr2_1:58263248-58263267	None:intergenic	30.0%
AATCTTGAAGAATAGATGTG+GGG	-	chr2_1:58263312-58263331	None:intergenic	30.0%
CAATCTTGAAGAATAGATGT+GGG	-	chr2_1:58263313-58263332	None:intergenic	30.0%
ACAATCTTGAAGAATAGATG+TGG	-	chr2_1:58263314-58263333	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	58262467	58265871	58262467	ID=Msa0214090;Name=Msa0214090
chr2_1	mRNA	58262467	58265871	58262467	ID=Msa0214090-mRNA-1;Parent=Msa0214090;Name=Msa0214090-mRNA-1;_AED=0.27;_eAED=0.27;_QI=539\|0.66\|1\|1\|0\|0.25\|4\|569\|34
chr2_1	exon	58262467	58262798	58262467	ID=Msa0214090-mRNA-1:exon:16037;Parent=Msa0214090-mRNA-1
chr2_1	exon	58263461	58263563	58263461	ID=Msa0214090-mRNA-1:exon:16038;Parent=Msa0214090-mRNA-1
chr2_1	exon	58265074	58265782	58265074	ID=Msa0214090-mRNA-1:exon:16039;Parent=Msa0214090-mRNA-1
chr2_1	exon	58265803	58265871	58265803	ID=Msa0214090-mRNA-1:exon:16040;Parent=Msa0214090-mRNA-1
chr2_1	five_prime_UTR	58262467	58262798	58262467	ID=Msa0214090-mRNA-1:five_prime_utr;Parent=Msa0214090-mRNA-1
chr2_1	five_prime_UTR	58263461	58263563	58263461	ID=Msa0214090-mRNA-1:five_prime_utr;Parent=Msa0214090-mRNA-1
chr2_1	five_prime_UTR	58265074	58265177	58265074	ID=Msa0214090-mRNA-1:five_prime_utr;Parent=Msa0214090-mRNA-1
chr2_1	CDS	58265178	58265282	58265178	ID=Msa0214090-mRNA-1:cds;Parent=Msa0214090-mRNA-1
chr2_1	three_prime_UTR	58265283	58265782	58265283	ID=Msa0214090-mRNA-1:three_prime_utr;Parent=Msa0214090-mRNA-1
chr2_1	three_prime_UTR	58265803	58265871	58265803	ID=Msa0214090-mRNA-1:three_prime_utr;Parent=Msa0214090-mRNA-1

Gene Sequence	>Msa0214090 ATGGTTTTATTGGTAGTTATAAGGCTCATATCTCCACAGTTGCATAGTATGGAGGACAATATAGTTATGTTGATGGTTCAGCAGGTATGTTATAATATTTTGTAG
Protein sequence	>Msa0214090 MVLLVVIRLISPQLHSMEDNIVMLMVQQVCYNIL*