AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1367750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 224 sgRNAs with CRISPR-Local

Find 477 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTGCACCTTTCTCTTTC+TGG 0.090871 tig0018533:+194131 None:intergenic
ATTTATTGACTCCAACTTTC+AGG 0.166655 tig0018533:+191389 None:intergenic
TGAATTCCATTTAGCTATAT+TGG 0.219632 tig0018533:-192770 Msa1367750:three_prime_UTR
GGAGAAGGTCCAAAAGAATT+AGG 0.229212 tig0018533:-194950 Msa1367750:CDS
GGAGAAGGTCCAAAAGAATT+AGG 0.229212 tig0018533:-195130 Msa1367750:CDS
CCTGGATTGCTCAGCTGAAT+TGG 0.251429 tig0018533:-191542 Msa1367750:three_prime_UTR
GCTGTGCTCGTTGGCTCTTT+TGG 0.262041 tig0018533:-191294 Msa1367750:three_prime_UTR
AGCTTGCCTTCAGCAAGTTT+TGG 0.267697 tig0018533:-193501 Msa1367750:three_prime_UTR
AACAATGGCCCTAATTCTTT+TGG 0.272373 tig0018533:+195121 None:intergenic
AACCATGGCCCTAATTCTTT+TGG 0.275168 tig0018533:+194941 None:intergenic
AATAAATTTATCGGGCCTTT+TGG 0.277715 tig0018533:-191369 Msa1367750:three_prime_UTR
CCAAGCGCGAGACTAATATT+TGG 0.280273 tig0018533:-191328 Msa1367750:three_prime_UTR
TCCGATCTGATGCTCGAAAA+TGG 0.289314 tig0018533:-198294 Msa1367750:five_prime_UTR
AGCTGGAGATATCAAGAAAT+TGG 0.296400 tig0018533:-194445 Msa1367750:CDS
TGAATGCTTGGATATCTATT+AGG 0.305363 tig0018533:+195308 None:intergenic
TTGAAGCAACTCTTCGAATT+CGG 0.314367 tig0018533:-192849 Msa1367750:three_prime_UTR
TCATCGCCAATATAGCTAAA+TGG 0.320678 tig0018533:+192764 None:intergenic
TGAAGCAACTCTTCGAATTC+GGG 0.326058 tig0018533:-192848 Msa1367750:three_prime_UTR
GAGTCAATAAATAAATTTAT+CGG 0.329465 tig0018533:-191378 Msa1367750:three_prime_UTR
CCATTATCTCTTTCCTATAC+AGG 0.329932 tig0018533:-194061 Msa1367750:intron
GTAACAAAGCACATATAAAA+AGG 0.337845 tig0018533:-194177 Msa1367750:three_prime_UTR
GAGTGCAGAAGTAATGTAAA+AGG 0.340817 tig0018533:-194361 Msa1367750:three_prime_UTR
GGCGATGGCGGTTGCGGTGG+TGG 0.346111 tig0018533:-194735 Msa1367750:CDS
ATCTAGACTCCGACACGTTC+CGG 0.356468 tig0018533:-191421 Msa1367750:three_prime_UTR
CTCTGAATCTGAACAGTCTT+AGG 0.361731 tig0018533:+197649 None:intergenic
CAAGTTTGATGCTTGCTTCA+AGG 0.362213 tig0018533:-193284 Msa1367750:three_prime_UTR
CCTCGTCGCAATGGCGGTTC+CGG 0.368561 tig0018533:-194274 Msa1367750:three_prime_UTR
CTTAGGCCACTTGTCGAATC+TGG 0.370934 tig0018533:+197666 None:intergenic
TCTAATCCTATTTGATCTCC+TGG 0.371886 tig0018533:+195268 None:intergenic
AACTTTCAGGTTGGGTCTGC+CGG 0.373589 tig0018533:+191402 None:intergenic
GGATATTCAAATGCAAGAAA+TGG 0.373656 tig0018533:-193263 Msa1367750:three_prime_UTR
GTGAATAAACACGCTCTTTG+TGG 0.376971 tig0018533:-191130 Msa1367750:three_prime_UTR
TTGACTCCAACTTTCAGGTT+GGG 0.377248 tig0018533:+191394 None:intergenic
CCCTCCACCACCTTCAGCTC+CGG 0.377700 tig0018533:+194839 None:intergenic
GAAACAATGTTTACCTGTAT+AGG 0.381243 tig0018533:+194048 None:intergenic
AGGAGGACAGATGGTGTAAT+AGG 0.382120 tig0018533:-194987 Msa1367750:CDS
GGTGTTGAAGTTGGCGGTGG+CGG 0.382336 tig0018533:-195041 Msa1367750:CDS
TTTCACTTCGCAAATTTCAT+TGG 0.387078 tig0018533:-198215 Msa1367750:five_prime_UTR
ATGTGCTAAAGTCCGCATTC+TGG 0.389059 tig0018533:+191509 None:intergenic
AACTTGTTGATGCTTCAATA+TGG 0.391748 tig0018533:+195368 None:intergenic
GAAAACCCAGGAGATCAAAT+AGG 0.395401 tig0018533:-195274 Msa1367750:CDS
TGAACAATTCCTTCCTCAAA+AGG 0.408776 tig0018533:+192673 None:intergenic
GCCACCACCACCTTCAGCTC+TGG 0.410878 tig0018533:+195013 None:intergenic
GCATGACGACTTGAATTTCA+TGG 0.412646 tig0018533:-191453 Msa1367750:three_prime_UTR
CCAATTCAGCTGAGCAATCC+AGG 0.420223 tig0018533:+191542 None:intergenic
CTGGATTGCTCAGCTGAATT+GGG 0.421005 tig0018533:-191541 Msa1367750:three_prime_UTR
ATGGTTGAAGTTGGTGGCGG+TGG 0.428827 tig0018533:-194924 Msa1367750:CDS
TGAAATTTGCGAAGTGAAAA+CGG 0.429932 tig0018533:+198219 None:intergenic
CCAATCGGATATTGAATGCT+TGG 0.430148 tig0018533:+195296 None:intergenic
CCTGTATAGGAAAGAGATAA+TGG 0.430433 tig0018533:+194061 None:intergenic
CAAGCGCGAGACTAATATTT+GGG 0.431684 tig0018533:-191327 Msa1367750:three_prime_UTR
GAGAAGGTCCAAAAGAATTA+GGG 0.431984 tig0018533:-194949 Msa1367750:CDS
GAGAAGGTCCAAAAGAATTA+GGG 0.431984 tig0018533:-195129 Msa1367750:CDS
CTGAAGGTGGTGGAGGGGAA+AGG 0.432104 tig0018533:-194833 Msa1367750:CDS
ACCGGAGCTGAAGGTGGTGG+AGG 0.432907 tig0018533:-194840 Msa1367750:CDS
TAATAGGTGGTGGTGGGGAA+AGG 0.439707 tig0018533:-194971 Msa1367750:CDS
GGCTTCTACGGGTAATGTTG+TGG 0.441520 tig0018533:-191477 Msa1367750:three_prime_UTR
TAGATGGTGGTGGAGAAATA+AGG 0.445546 tig0018533:-195070 Msa1367750:CDS
TAGTAGGTGGTGGTGGGGAA+AGG 0.449530 tig0018533:-195151 Msa1367750:CDS
GCTTCTACGGGTAATGTTGT+GGG 0.449565 tig0018533:-191476 Msa1367750:three_prime_UTR
GCCACCACCACCTTCAGCTC+CGG 0.450368 tig0018533:+195193 None:intergenic
ATTGTTGAAGTTGGTGGCGG+TGG 0.454080 tig0018533:-195104 Msa1367750:CDS
CATACGGGGACTGGCTTCTA+CGG 0.455310 tig0018533:-191489 Msa1367750:three_prime_UTR
GTTGAAGTTGGCGGTGGCGG+TGG 0.456963 tig0018533:-195038 Msa1367750:CDS
GAGTCTGAAAGGAGATTAAA+CGG 0.462557 tig0018533:+198373 None:intergenic
GGCACCGGAGCTGAAGGTGG+TGG 0.463445 tig0018533:-194843 Msa1367750:CDS
ATGGATGACGTTGGTGGCGA+TGG 0.464563 tig0018533:-194750 Msa1367750:CDS
GTTGGTGGCGATGGCGGTTG+CGG 0.466718 tig0018533:-194741 Msa1367750:CDS
GTGACGGCCACACCTGATAT+AGG 0.469948 tig0018533:-194334 Msa1367750:three_prime_UTR
CTGAAGGTGGTGGTGGCGAA+AGG 0.471160 tig0018533:-195187 Msa1367750:CDS
AGTCAATAAATAAATTTATC+GGG 0.471486 tig0018533:-191377 Msa1367750:three_prime_UTR
GATGGCGGTTGCGGTGGTGG+TGG 0.474313 tig0018533:-194732 Msa1367750:CDS
ATTAGGGCCATTGTTGAAGT+TGG 0.475450 tig0018533:-195113 Msa1367750:CDS
ACCACCACCTACTACAATAT+CGG 0.476563 tig0018533:+195160 None:intergenic
CAGAAGTAATGTAAAAGGTA+AGG 0.479588 tig0018533:-194356 Msa1367750:three_prime_UTR
ACCGGAGCTGAAGGTGGTGG+TGG 0.481766 tig0018533:-195194 Msa1367750:CDS
AGGACCGATGGAGTTGTAGA+TGG 0.484578 tig0018533:-194810 Msa1367750:CDS
ACTATTGCTGCTGTGCTCGT+TGG 0.485368 tig0018533:-191303 Msa1367750:three_prime_UTR
GGTTGCGGTGGTGGTGGCGA+TGG 0.492001 tig0018533:-194726 Msa1367750:CDS
AGACGAATCAACTACCAATC+TGG 0.492221 tig0018533:-194107 Msa1367750:three_prime_UTR
AGGGCCATTGTTGAAGTTGG+TGG 0.492247 tig0018533:-195110 Msa1367750:CDS
TTGTAGATGGTGGTGGCGAA+AGG 0.493499 tig0018533:-194797 Msa1367750:CDS
GATGGTGTAATAGGTGGTGG+TGG 0.494417 tig0018533:-194978 Msa1367750:CDS
ATGGATGGTGTTGAAGTTGG+CGG 0.497191 tig0018533:-194867 Msa1367750:CDS
CCGGAGCTGAAGGTGGTGGA+GGG 0.497991 tig0018533:-194839 Msa1367750:CDS
GTTGAAGTTGGCGGTGGCAC+CGG 0.498250 tig0018533:-194858 Msa1367750:CDS
GTTGAAGTTGGCGGTGGCAC+CGG 0.498250 tig0018533:-195212 Msa1367750:CDS
TCAGCTGAATTGGGATCTGT+TGG 0.499150 tig0018533:-191532 Msa1367750:three_prime_UTR
TCTGAAAATATCACGCCAAA+AGG 0.500549 tig0018533:+191354 None:intergenic
TTCAGATTCAGAGGAAGAAG+AGG 0.501652 tig0018533:-197639 Msa1367750:five_prime_UTR
GGCACCGGAGCTGAAGGTGG+TGG 0.501956 tig0018533:-195197 Msa1367750:CDS
GAGTTCGATGCGATGGCGAA+AGG 0.502422 tig0018533:-195247 Msa1367750:CDS
GATATTGTAGTAGGTGGTGG+TGG 0.503534 tig0018533:-195158 Msa1367750:CDS
GGCGGTGGCACCGGAGCTGA+AGG 0.503621 tig0018533:-194849 Msa1367750:CDS
GGCGGTGGCACCGGAGCTGA+AGG 0.503621 tig0018533:-195203 Msa1367750:CDS
ATGGTGTAATAGGTGGTGGT+GGG 0.503761 tig0018533:-194977 Msa1367750:CDS
CTAATCCTATTTGATCTCCT+GGG 0.505911 tig0018533:+195269 None:intergenic
GGTGGCAATGAGGCTGTAGA+TGG 0.510887 tig0018533:-194906 Msa1367750:CDS
GGTGGCAATGAGGCTGTAGA+TGG 0.510887 tig0018533:-195086 Msa1367750:CDS
ACTTTAGCACATACGGGGAC+TGG 0.511795 tig0018533:-191498 Msa1367750:three_prime_UTR
GGCAGACCCAACCTGAAAGT+TGG 0.512293 tig0018533:-191400 Msa1367750:three_prime_UTR
GGCACCAGAGCTGAAGGTGG+TGG 0.512569 tig0018533:-195017 Msa1367750:CDS
ACCGCCACCAACTTCAACAA+TGG 0.518041 tig0018533:+195106 None:intergenic
AGGATGGATGGTGTTGAAGT+TGG 0.519257 tig0018533:-194870 Msa1367750:CDS
TTCAAATGCAAGAAATGGAC+GGG 0.522978 tig0018533:-193258 Msa1367750:intron
ATGAAGAGTGTTTGAAATGT+GGG 0.523905 tig0018533:-192717 Msa1367750:three_prime_UTR
AGGATGGATGGTGTTGAAGT+TGG 0.523994 tig0018533:-195050 Msa1367750:CDS
AACACTCTTCATATGTAGCA+TGG 0.525664 tig0018533:+192728 None:intergenic
GAAGCCACTGAGAACTAGTA+TGG 0.525821 tig0018533:-193528 Msa1367750:three_prime_UTR
ATTAGGGCCATGGTTGAAGT+TGG 0.525869 tig0018533:-194933 Msa1367750:CDS
GGAGGGGAAAGGAGGACCGA+TGG 0.526035 tig0018533:-194822 Msa1367750:CDS
AGGGCCATGGTTGAAGTTGG+TGG 0.526237 tig0018533:-194930 Msa1367750:CDS
ATTGACTCCAACTTTCAGGT+TGG 0.526314 tig0018533:+191393 None:intergenic
AATGCGGACTTTAGCACATA+CGG 0.526953 tig0018533:-191505 Msa1367750:three_prime_UTR
ATGGATGGTGTTGAAGTTGG+CGG 0.526957 tig0018533:-195047 Msa1367750:CDS
GGAGATGTACATGGTGGTTG+TGG 0.527779 tig0018533:-194705 Msa1367750:CDS
GATGGAGAGGACGGCGAATG+AGG 0.528403 tig0018533:-192824 Msa1367750:three_prime_UTR
GGCGGTGGCACCAGAGCTGA+AGG 0.528855 tig0018533:-195023 Msa1367750:CDS
AACTCTTCGAATTCGGGAGA+TGG 0.529922 tig0018533:-192842 Msa1367750:three_prime_UTR
ACCGCCACCAACTTCAACCA+TGG 0.531071 tig0018533:+194926 None:intergenic
AATCTAGTCCAGAAAGAGAA+AGG 0.531970 tig0018533:-194139 Msa1367750:three_prime_UTR
CCAAATATTAGTCTCGCGCT+TGG 0.532147 tig0018533:+191328 None:intergenic
CAAACTGAAGTTGAACCATC+AGG 0.532569 tig0018533:+193443 None:intergenic
AACAGGCAAGAAGAGACAGC+CGG 0.534721 tig0018533:-193477 Msa1367750:three_prime_UTR
ACCAGAGCTGAAGGTGGTGG+TGG 0.536501 tig0018533:-195014 Msa1367750:CDS
TTCGAATTCGGGAGATGGAG+AGG 0.538631 tig0018533:-192837 Msa1367750:three_prime_UTR
CTGAAGGTGGTGGTGGCGAA+AGG 0.539321 tig0018533:-195007 Msa1367750:CDS
GTGGTGGTGGGGAAAGGAGA+AGG 0.544468 tig0018533:-194965 Msa1367750:CDS
GTGGTGGTGGGGAAAGGAGA+AGG 0.544468 tig0018533:-195145 Msa1367750:CDS
CTGTTCCCAAAACTTGCTGA+AGG 0.546763 tig0018533:+193495 None:intergenic
AGGAGGACCGATATTGTAGT+AGG 0.547868 tig0018533:-195167 Msa1367750:CDS
CGAGGACATCACGGATTTAG+CGG 0.548208 tig0018533:+194292 None:intergenic
GCCATTGTTGAAGTTGGTGG+CGG 0.549648 tig0018533:-195107 Msa1367750:CDS
GGTGGCGATGGCGGTTGCGG+TGG 0.549823 tig0018533:-194738 Msa1367750:CDS
ACGGCGAATGAGGAGACTAA+TGG 0.553816 tig0018533:-192814 Msa1367750:three_prime_UTR
GGTGGCACCGGAGCTGAAGG+TGG 0.553954 tig0018533:-194846 Msa1367750:CDS
GGTGGCACCGGAGCTGAAGG+TGG 0.553954 tig0018533:-195200 Msa1367750:CDS
ACCGATATTGTAGTAGGTGG+TGG 0.554808 tig0018533:-195161 Msa1367750:CDS
GGAAGCTATTCGAGAAGAAG+AGG 0.554823 tig0018533:-197696 Msa1367750:intron
CAGAGAAGAGAGCTAAAGAT+CGG 0.559209 tig0018533:+198250 None:intergenic
TGGTGGTGGAGAAATAAGGA+TGG 0.560370 tig0018533:-195066 Msa1367750:CDS
CCAAGCATTCAATATCCGAT+TGG 0.562018 tig0018533:-195296 Msa1367750:CDS
ATACGGGGACTGGCTTCTAC+GGG 0.565321 tig0018533:-191488 Msa1367750:three_prime_UTR
TATGAAGAGTGTTTGAAATG+TGG 0.566182 tig0018533:-192718 Msa1367750:three_prime_UTR
CGGAGCTGAAGGTGGTGGAG+GGG 0.566193 tig0018533:-194838 Msa1367750:CDS
GATGGTGTTGAAGTTGGCGG+TGG 0.568175 tig0018533:-195044 Msa1367750:CDS
GATTTAGCGGAGGCTTTGCG+CGG 0.569231 tig0018533:+194305 None:intergenic
GGTGGAGAAATGAGGATGGA+TGG 0.569241 tig0018533:-194882 Msa1367750:CDS
ATGACGGATGGTGTTGAAGT+TGG 0.569733 tig0018533:-195224 Msa1367750:CDS
ATGGTGGTGGCGAAAGGAGA+AGG 0.570011 tig0018533:-194791 Msa1367750:CDS
ACGGATGGTGTTGAAGTTGG+CGG 0.570486 tig0018533:-195221 Msa1367750:CDS
ACAGGCAAGAAGAGACAGCC+GGG 0.572058 tig0018533:-193476 Msa1367750:three_prime_UTR
ACAGATGGTGTAATAGGTGG+TGG 0.573984 tig0018533:-194981 Msa1367750:CDS
CCGTGATGTCCTCGTCGCAA+TGG 0.574492 tig0018533:-194283 Msa1367750:three_prime_UTR
ATATTGTAGTAGGTGGTGGT+GGG 0.574784 tig0018533:-195157 Msa1367750:CDS
AGGATTAGAGTTCGATGCGA+TGG 0.575134 tig0018533:-195254 Msa1367750:CDS
ATGCGGACTTTAGCACATAC+GGG 0.575592 tig0018533:-191504 Msa1367750:three_prime_UTR
AAGGTGGTGGTGGCGAAAGG+AGG 0.577210 tig0018533:-195184 Msa1367750:CDS
TGGTGGTGGAGAAATGAGGA+TGG 0.578840 tig0018533:-194886 Msa1367750:CDS
CTAAGACTGTTCAGATTCAG+AGG 0.581573 tig0018533:-197648 Msa1367750:five_prime_UTR
GCCATGGTTGAAGTTGGTGG+CGG 0.582925 tig0018533:-194927 Msa1367750:CDS
AAGGTGGTGGAGGGGAAAGG+AGG 0.586200 tig0018533:-194830 Msa1367750:CDS
ATAACTGAAACTAAATCGAT+CGG 0.586558 tig0018533:+194242 None:intergenic
CTAATGGTGAATGTAGTGAA+AGG 0.588155 tig0018533:-192798 Msa1367750:three_prime_UTR
ATTCAAATGCAAGAAATGGA+CGG 0.588460 tig0018533:-193259 Msa1367750:three_prime_UTR
TTGGGTCTGCCGGAACGTGT+CGG 0.588603 tig0018533:+191412 None:intergenic
CCACTGAGAACTAGTATGGT+GGG 0.590558 tig0018533:-193524 Msa1367750:three_prime_UTR
CAATGGAGAAAGAGTCTGAA+AGG 0.590894 tig0018533:+198362 None:intergenic
AGCAAGCATCAAACTTGTGA+GGG 0.592861 tig0018533:+193290 None:intergenic
GTCCAAAAGAATTAGGGCCA+TGG 0.594851 tig0018533:-194943 Msa1367750:CDS
AATCGATCGGAGAGTTCTAC+CGG 0.594959 tig0018533:+194255 None:intergenic
AGGGCAATGGATGACGTTGG+TGG 0.595874 tig0018533:-194756 Msa1367750:CDS
ATGCGATGGCGAAAGGATGA+CGG 0.597203 tig0018533:-195240 Msa1367750:CDS
GAACACAGTTGAAACCAGAT+TGG 0.599444 tig0018533:+194093 None:intergenic
AAGGTGGTGGTGGCGAAAGG+AGG 0.602934 tig0018533:-195004 Msa1367750:CDS
GGTGGAGAAATAAGGATGGA+TGG 0.604701 tig0018533:-195062 Msa1367750:CDS
GATGGTGTTGAAGTTGGCGG+TGG 0.606604 tig0018533:-194864 Msa1367750:CDS
GCCACTGAGAACTAGTATGG+TGG 0.607785 tig0018533:-193525 Msa1367750:three_prime_UTR
TGGTGTAATAGGTGGTGGTG+GGG 0.608606 tig0018533:-194976 Msa1367750:CDS
ATTTGACCAGATTCGACAAG+TGG 0.608851 tig0018533:-197672 Msa1367750:five_prime_UTR
AGGACAGATGGTGTAATAGG+TGG 0.609112 tig0018533:-194984 Msa1367750:CDS
CCGGGAAAAGAGATGCCTGA+TGG 0.609734 tig0018533:-193458 Msa1367750:three_prime_UTR
ACCACCATCTACAACTCCAT+CGG 0.611181 tig0018533:+194806 None:intergenic
AAGCAAGCATCAAACTTGTG+AGG 0.613257 tig0018533:+193289 None:intergenic
GATGGAGTTGTAGATGGTGG+TGG 0.615734 tig0018533:-194804 Msa1367750:CDS
TGATGTCCTCGTCGCAATGG+CGG 0.616829 tig0018533:-194280 Msa1367750:three_prime_UTR
CTTCTACGGGTAATGTTGTG+GGG 0.617417 tig0018533:-191475 Msa1367750:three_prime_UTR
ATGTTAATGGAAGTGACTGC+AGG 0.621000 tig0018533:-193385 Msa1367750:three_prime_UTR
GATGGTGTTGAAGTTGGCGG+TGG 0.623232 tig0018533:-195218 Msa1367750:CDS
AGAGTGTTTGAAATGTGGGA+TGG 0.624246 tig0018533:-192713 Msa1367750:three_prime_UTR
GGTGGCGATGGAGATGTACA+TGG 0.626469 tig0018533:-194714 Msa1367750:CDS
GAAGCTATTCGAGAAGAAGA+GGG 0.626506 tig0018533:-197695 Msa1367750:intron
AATGAGGCTGTAGATGGTGG+TGG 0.626981 tig0018533:-194900 Msa1367750:CDS
AATGAGGCTGTAGATGGTGG+TGG 0.626981 tig0018533:-195080 Msa1367750:CDS
AATTCGGGAGATGGAGAGGA+CGG 0.628944 tig0018533:-192833 Msa1367750:three_prime_UTR
GATGACGTTGGTGGCGATGG+CGG 0.631346 tig0018533:-194747 Msa1367750:CDS
GGCAATGAGGCTGTAGATGG+TGG 0.632531 tig0018533:-194903 Msa1367750:CDS
GGCAATGAGGCTGTAGATGG+TGG 0.632531 tig0018533:-195083 Msa1367750:CDS
AATATCCGATTGGAAAACCC+AGG 0.633825 tig0018533:-195286 Msa1367750:CDS
ATGGCAATTGAAGCTCGTTG+AGG 0.635193 tig0018533:-198275 Msa1367750:five_prime_UTR
TAATGTAAAAGGTAAGGTGA+CGG 0.636801 tig0018533:-194350 Msa1367750:three_prime_UTR
TATTGTAGTAGGTGGTGGTG+GGG 0.637343 tig0018533:-195156 Msa1367750:CDS
GGGATCTGTTGGCCAGAATG+CGG 0.637679 tig0018533:-191521 Msa1367750:three_prime_UTR
GCTTGGATATCTATTAGGCA+TGG 0.639413 tig0018533:+195313 None:intergenic
GGTGGCGAAAGGAGGACAGA+TGG 0.640376 tig0018533:-194996 Msa1367750:CDS
TAGATGGTGGTGGAGAAATG+AGG 0.642475 tig0018533:-194890 Msa1367750:CDS
CGAGCATCAGATCGGAAGAG+CGG 0.651059 tig0018533:+198301 None:intergenic
CCATTGCGACGAGGACATCA+CGG 0.652805 tig0018533:+194283 None:intergenic
GGTGGCACCAGAGCTGAAGG+TGG 0.653943 tig0018533:-195020 Msa1367750:CDS
GCGAGATATTAGAAAAGCTG+AGG 0.654014 tig0018533:-194683 Msa1367750:CDS
AGGACCGATATTGTAGTAGG+TGG 0.655795 tig0018533:-195164 Msa1367750:CDS
ATCAGGGCAATGGATGACGT+TGG 0.657602 tig0018533:-194759 Msa1367750:CDS
CCGGAACCGCCATTGCGACG+AGG 0.668033 tig0018533:+194274 None:intergenic
GATGTGAAGTGTGCAGACAG+CGG 0.669637 tig0018533:-193340 Msa1367750:three_prime_UTR
AGTTGGTGGCGGTGGCAATG+AGG 0.672386 tig0018533:-194916 Msa1367750:CDS
AGTTGGTGGCGGTGGCAATG+AGG 0.672386 tig0018533:-195096 Msa1367750:CDS
TCAGTTTGAAGCCTTCTGTG+CGG 0.678971 tig0018533:-193428 Msa1367750:three_prime_UTR
GGACATCACGGATTTAGCGG+AGG 0.683899 tig0018533:+194295 None:intergenic
ACCGATGGAGTTGTAGATGG+TGG 0.690749 tig0018533:-194807 Msa1367750:CDS
TGTCAGGGAAACATTGCTGA+AGG 0.696155 tig0018533:-191600 Msa1367750:intron
TGCGGACTTTAGCACATACG+GGG 0.719539 tig0018533:-191503 Msa1367750:three_prime_UTR
CCCACCATACTAGTTCTCAG+TGG 0.729319 tig0018533:+193524 None:intergenic
GATGGCGAAAGGATGACGGA+TGG 0.756508 tig0018533:-195236 Msa1367750:CDS
GGCGATGGAGATGTACATGG+TGG 0.786952 tig0018533:-194711 Msa1367750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTTTTTTTTTT+TGG - tig0018533:196287-196306 Msa1367750:intron 0.0%
!! TGATTTATAAAAAACAATAT+GGG + tig0018533:196608-196627 None:intergenic 10.0%
!! ATGATTTATAAAAAACAATA+TGG + tig0018533:196609-196628 None:intergenic 10.0%
!! ATCACTATCATTTATTAAAA+TGG + tig0018533:197826-197845 None:intergenic 15.0%
!! GAGTCAATAAATAAATTTAT+CGG - tig0018533:198121-198140 Msa1367750:intron 15.0%
!! AGTCAATAAATAAATTTATC+GGG - tig0018533:198122-198141 Msa1367750:intron 15.0%
!! AAAAACTTCAGTTATTTATT+TGG + tig0018533:198280-198299 None:intergenic 15.0%
!! AATTGAATATAGAATCCTTA+GGG + tig0018533:191422-191441 None:intergenic 20.0%
!! ACTTATTTGAACTTATTTAG+TGG - tig0018533:191587-191606 Msa1367750:three_prime_UTR 20.0%
!!! AAGTTTTTACACAATTAACA+TGG + tig0018533:192209-192228 None:intergenic 20.0%
!! AAAAATTCAGAGAATTTCAA+TGG + tig0018533:192708-192727 None:intergenic 20.0%
!!! AAGTTTTAACACAATTAACA+TGG + tig0018533:192867-192886 None:intergenic 20.0%
!!! CAAAAGTACAAACTTAATAA+TGG + tig0018533:193068-193087 None:intergenic 20.0%
!!! CATTATTAAGTTTGTACTTT+TGG - tig0018533:193066-193085 Msa1367750:intron 20.0%
!! AGCAAAAGACAAAAATTTAA+TGG - tig0018533:193210-193229 Msa1367750:intron 20.0%
!!! AAGTTTTAACACAATTAACA+TGG + tig0018533:192867-192886 None:intergenic 20.0%
!!! CAAAAGTACAAACTTAATAA+TGG + tig0018533:193068-193087 None:intergenic 20.0%
!!! CATTATTAAGTTTGTACTTT+TGG - tig0018533:193066-193085 Msa1367750:intron 20.0%
!! AGCAAAAGACAAAAATTTAA+TGG - tig0018533:193210-193229 Msa1367750:intron 20.0%
!! AGAAAATAGAAGTTTATAGA+GGG + tig0018533:194052-194071 None:intergenic 20.0%
!! AAGAAAATAGAAGTTTATAG+AGG + tig0018533:194053-194072 None:intergenic 20.0%
!! TCATTAAAATGCACAAATAT+TGG - tig0018533:195651-195670 Msa1367750:intron 20.0%
!! CAATAAAAAAAGGAAAGAAA+GGG + tig0018533:195782-195801 None:intergenic 20.0%
!! ACAATAAAAAAAGGAAAGAA+AGG + tig0018533:195783-195802 None:intergenic 20.0%
!! GAAAATTCGACAATAAAAAA+AGG + tig0018533:195792-195811 None:intergenic 20.0%
!!! TTTCTGTGTAATTTTTGAAA+TGG - tig0018533:195808-195827 Msa1367750:intron 20.0%
!!! TTTCTGTGTAATTTTTGAAA+TGG - tig0018533:195808-195827 Msa1367750:intron 20.0%
!!! ATAAAAGTATCTGAGATTTT+AGG - tig0018533:197242-197261 Msa1367750:intron 20.0%
!!! GCTCTAACTTTTTTATATAT+AGG + tig0018533:197301-197320 None:intergenic 20.0%
!! TGTGTTTAGTATAAAAATCT+TGG - tig0018533:197551-197570 Msa1367750:intron 20.0%
!! GTGTTTAGTATAAAAATCTT+GGG - tig0018533:197552-197571 Msa1367750:intron 20.0%
!!! AACTGAAGTTTTTTAAGTAA+CGG - tig0018533:198287-198306 Msa1367750:five_prime_UTR 20.0%
! CAATTGAATATAGAATCCTT+AGG + tig0018533:191423-191442 None:intergenic 25.0%
! CATGATACAAAAACAGAATT+TGG + tig0018533:191478-191497 None:intergenic 25.0%
! ATCAAATCTAATGTCCTTAT+TGG - tig0018533:191765-191784 Msa1367750:intron 25.0%
! TATTTAGCAATTGATCTGTA+TGG + tig0018533:192251-192270 None:intergenic 25.0%
! TACAGATCAATTGCTAAATA+TGG - tig0018533:192251-192270 Msa1367750:intron 25.0%
!! ATACTTCTAAAGAAAACACT+TGG + tig0018533:192294-192313 None:intergenic 25.0%
! AAAAACTACCAAAGGAAATA+AGG + tig0018533:192357-192376 None:intergenic 25.0%
!!! TATTTCCTTTGGTAGTTTTT+TGG - tig0018533:192357-192376 Msa1367750:intron 25.0%
! TTAAACCAAAAAACTACCAA+AGG + tig0018533:192365-192384 None:intergenic 25.0%
! AAATTTGTACTACTTTGCTT+TGG - tig0018533:192557-192576 Msa1367750:intron 25.0%
! ATTATCACTAAGTGAATCAT+TGG + tig0018533:192584-192603 None:intergenic 25.0%
! TCAATTTCCTGATTTAATTG+AGG + tig0018533:192679-192698 None:intergenic 25.0%
! ATGTTGAAATGCTAGATAAA+AGG + tig0018533:192765-192784 None:intergenic 25.0%
! TTAACATGGTTTAATCATTG+AGG + tig0018533:192195-192214 None:intergenic 25.0%
! AGTCAATCACACAATTAAAA+TGG + tig0018533:192909-192928 None:intergenic 25.0%
!!! TAGTTGTTTTTGTGAATCAA+AGG - tig0018533:193302-193321 Msa1367750:three_prime_UTR 25.0%
! TATTGTTCTTATAGAAAGTG+TGG - tig0018533:193368-193387 Msa1367750:three_prime_UTR 25.0%
! TTAACATGGTTTAATCATTG+AGG + tig0018533:192195-192214 None:intergenic 25.0%
! AGTCAATCACACAATTAAAA+TGG + tig0018533:192909-192928 None:intergenic 25.0%
!!! TAGTTGTTTTTGTGAATCAA+AGG - tig0018533:193302-193321 Msa1367750:three_prime_UTR 25.0%
! TATTGTTCTTATAGAAAGTG+TGG - tig0018533:193368-193387 Msa1367750:three_prime_UTR 25.0%
!! TCCTTTATTTATTGAATCTG+TGG - tig0018533:194010-194029 Msa1367750:intron 25.0%
! TGAAAATACAATTAGTGTGA+TGG + tig0018533:195002-195021 None:intergenic 25.0%
! ATAACTGAAACTAAATCGAT+CGG + tig0018533:195260-195279 None:intergenic 25.0%
! GTAACAAAGCACATATAAAA+AGG - tig0018533:195322-195341 Msa1367750:exon 25.0%
!!! GTGTTTTTTAAGTCAATGTT+TGG - tig0018533:195519-195538 Msa1367750:intron 25.0%
! AGAGAGAGAATTAAAAAGAA+GGG + tig0018533:195757-195776 None:intergenic 25.0%
! AAGAGAGAGAATTAAAAAGA+AGG + tig0018533:195758-195777 None:intergenic 25.0%
!!! AGTTTTTTCTAAATCAGCAA+AGG + tig0018533:196339-196358 None:intergenic 25.0%
! TATCATTGAATTTATCAGCA+AGG + tig0018533:196395-196414 None:intergenic 25.0%
! ACAAACATAACATGTATAGA+GGG + tig0018533:196558-196577 None:intergenic 25.0%
! AACAAACATAACATGTATAG+AGG + tig0018533:196559-196578 None:intergenic 25.0%
!! CATGTACTTACATTATTTTC+AGG - tig0018533:196626-196645 Msa1367750:intron 25.0%
! TGAATTCCATTTAGCTATAT+TGG - tig0018533:196729-196748 Msa1367750:intron 25.0%
!!! TTGTTTTGTATGAGCATATA+TGG - tig0018533:196869-196888 Msa1367750:intron 25.0%
! TGTTTCATATGAGTAATTAG+AGG - tig0018533:197520-197539 Msa1367750:intron 25.0%
!! CTGAATGTTGACATTTTTAT+TGG - tig0018533:197876-197895 Msa1367750:intron 25.0%
!!! ACTGAAGTTTTTTAAGTAAC+GGG - tig0018533:198288-198307 Msa1367750:five_prime_UTR 25.0%
!! TTTTCTCAGACAATTATCAA+AGG + tig0018533:198347-198366 None:intergenic 25.0%
TGAAATTTGCGAAGTGAAAA+CGG + tig0018533:191283-191302 None:intergenic 30.0%
TTTCACTTCGCAAATTTCAT+TGG - tig0018533:191284-191303 Msa1367750:three_prime_UTR 30.0%
!! TATCTGATATTTGCTATCTC+AGG - tig0018533:191541-191560 Msa1367750:three_prime_UTR 30.0%
TAAACTGAAACAATCCAAAC+AGG + tig0018533:191568-191587 None:intergenic 30.0%
!! TAGTGGAATAAGTTTTGTAG+TGG - tig0018533:191604-191623 Msa1367750:intron 30.0%
! TGACTTATTTGACTTATCTC+AGG - tig0018533:191633-191652 Msa1367750:intron 30.0%
! GACTTATTTGACTTATCTCA+GGG - tig0018533:191634-191653 Msa1367750:intron 30.0%
AACACCAATCAAAACAAAAC+AGG + tig0018533:191660-191679 None:intergenic 30.0%
TTTGTGCTCACTACTAAAAT+GGG + tig0018533:191709-191728 None:intergenic 30.0%
! TTTTGTGCTCACTACTAAAA+TGG + tig0018533:191710-191729 None:intergenic 30.0%
!! AATGTCCTTATTGGTTGTTT+TGG - tig0018533:191774-191793 Msa1367750:intron 30.0%
TTCATCCAAAACAACCAATA+AGG + tig0018533:191782-191801 None:intergenic 30.0%
!!! TATTGGTTGTTTTGGATGAA+TGG - tig0018533:191782-191801 Msa1367750:intron 30.0%
AAACCATATAGACTGATACA+CGG + tig0018533:192012-192031 None:intergenic 30.0%
! TATCAGTCTATATGGTTTGT+AGG - tig0018533:192014-192033 Msa1367750:intron 30.0%
TTTCAACATTTAGCATGTAC+TGG - tig0018533:192118-192137 Msa1367750:intron 30.0%
! ATACCATACCTTATTTCCTT+TGG - tig0018533:192346-192365 Msa1367750:intron 30.0%
TGCAACTTTATCAGCTTAAA+AGG + tig0018533:192441-192460 None:intergenic 30.0%
! TTTTAAGCTGATAAAGTTGC+AGG - tig0018533:192440-192459 Msa1367750:intron 30.0%
TGATTTAATTGAGGCAATGT+TGG + tig0018533:192670-192689 None:intergenic 30.0%
AACATTGCCTCAATTAAATC+AGG - tig0018533:192669-192688 Msa1367750:intron 30.0%
TTTCAACATTTAGCATGTAC+TGG - tig0018533:192118-192137 Msa1367750:intron 30.0%
! TGTGTGATTGACTATGTTTT+TGG - tig0018533:192916-192935 Msa1367750:intron 30.0%
ACAAATGCAATCATTCAACA+AGG + tig0018533:193014-193033 None:intergenic 30.0%
! TGTGTGATTGACTATGTTTT+TGG - tig0018533:192916-192935 Msa1367750:intron 30.0%
ACAAATGCAATCATTCAACA+AGG + tig0018533:193014-193033 None:intergenic 30.0%
! TATTCTGAGTGTGACATTTT+TGG + tig0018533:193765-193784 None:intergenic 30.0%
GCCACAGATTCAATAAATAA+AGG + tig0018533:194014-194033 None:intergenic 30.0%
!! AACTTGTTGATGCTTCAATA+TGG + tig0018533:194134-194153 None:intergenic 30.0%
TGAATGCTTGGATATCTATT+AGG + tig0018533:194194-194213 None:intergenic 30.0%
TCTATTATGCATTTGACACA+CGG - tig0018533:194887-194906 Msa1367750:CDS 30.0%
TCGTTTGTCAGATAAAAATG+TGG - tig0018533:195024-195043 Msa1367750:CDS 30.0%
CAGAAGTAATGTAAAAGGTA+AGG - tig0018533:195143-195162 Msa1367750:CDS 30.0%
TAATGTAAAAGGTAAGGTGA+CGG - tig0018533:195149-195168 Msa1367750:CDS 30.0%
GAAACAATGTTTACCTGTAT+AGG + tig0018533:195454-195473 None:intergenic 30.0%
! TTTTGTGTTTAAGCAAAGAC+TGG - tig0018533:195585-195604 Msa1367750:intron 30.0%
GGATATTCAAATGCAAGAAA+TGG - tig0018533:196236-196255 Msa1367750:intron 30.0%
ATTCAAATGCAAGAAATGGA+CGG - tig0018533:196240-196259 Msa1367750:intron 30.0%
!! TATGAAGAGTGTTTGAAATG+TGG - tig0018533:196781-196800 Msa1367750:intron 30.0%
!! ATGAAGAGTGTTTGAAATGT+GGG - tig0018533:196782-196801 Msa1367750:intron 30.0%
! TTATGTCTCAAAACCTTTTG+AGG - tig0018533:196813-196832 Msa1367750:intron 30.0%
! TGTATTAGTTAGTATCGAAC+TGG - tig0018533:196899-196918 Msa1367750:intron 30.0%
AAGAAAGAGAAAAGTGACAA+AGG + tig0018533:196952-196971 None:intergenic 30.0%
TAATAAGCTCTTCTGTTGTT+GGG + tig0018533:197432-197451 None:intergenic 30.0%
TTAATAAGCTCTTCTGTTGT+TGG + tig0018533:197433-197452 None:intergenic 30.0%
TATGAGTAATTAGAGGATGA+AGG - tig0018533:197527-197546 Msa1367750:intron 30.0%
!! AGAAAACTGTTTCTGTTACA+AGG - tig0018533:197668-197687 Msa1367750:five_prime_UTR 30.0%
!! TGATGTTTCGTTTTTATGTC+TGG - tig0018533:197720-197739 Msa1367750:intron 30.0%
!! TTGACATTTTTATTGGTGTC+AGG - tig0018533:197883-197902 Msa1367750:intron 30.0%
!!! TGACATTTTTATTGGTGTCA+GGG - tig0018533:197884-197903 Msa1367750:intron 30.0%
!! ACTTTTAACCGACTTTTTGA+TGG - tig0018533:197925-197944 Msa1367750:intron 30.0%
!! ATTTATTGACTCCAACTTTC+AGG + tig0018533:198113-198132 None:intergenic 30.0%
! AATAAATTTATCGGGCCTTT+TGG - tig0018533:198130-198149 Msa1367750:intron 30.0%
!!! AAGACTCGTTGTTTTTCAAT+TGG - tig0018533:198231-198250 Msa1367750:five_prime_UTR 30.0%
!!! AGACTCGTTGTTTTTCAATT+GGG - tig0018533:198232-198251 Msa1367750:five_prime_UTR 30.0%
GAGTCTGAAAGGAGATTAAA+CGG + tig0018533:191129-191148 None:intergenic 35.0%
TTGTGTCTGAAAAATCGCAA+TGG + tig0018533:191157-191176 None:intergenic 35.0%
GAGAAAAAACGAGCTTCAAT+CGG + tig0018533:191315-191334 None:intergenic 35.0%
TGCTTCGAAAACTCTTGATT+AGG - tig0018533:191381-191400 Msa1367750:three_prime_UTR 35.0%
GCTTCGAAAACTCTTGATTA+GGG - tig0018533:191382-191401 Msa1367750:three_prime_UTR 35.0%
GTTTATACTCTCAAACCCTA+AGG - tig0018533:191404-191423 Msa1367750:three_prime_UTR 35.0%
ATATAGACTGATACACGGAT+AGG + tig0018533:192007-192026 None:intergenic 35.0%
TATCCGTGTATCAGTCTATA+TGG - tig0018533:192006-192025 Msa1367750:intron 35.0%
TATGGTTTAATCAGTCTGCA+GGG + tig0018533:192233-192252 None:intergenic 35.0%
CTACCAAAGGAAATAAGGTA+TGG + tig0018533:192352-192371 None:intergenic 35.0%
GAAGCATGACATTATTGACA+TGG + tig0018533:192615-192634 None:intergenic 35.0%
! GTTTTCATGAGCTATCTTGA+TGG - tig0018533:192946-192965 Msa1367750:intron 35.0%
! TGTGCTACTGCTATATATCT+AGG + tig0018533:193133-193152 None:intergenic 35.0%
! TTCTGAGTGTGACACATTTT+TGG + tig0018533:193166-193185 None:intergenic 35.0%
! ATTTAATGGACCACACACTA+TGG - tig0018533:193224-193243 Msa1367750:intron 35.0%
ACACTATGGTATGATAGAGT+TGG - tig0018533:193238-193257 Msa1367750:intron 35.0%
! CTTATAGAAAGTGTGGAAAC+TGG - tig0018533:193375-193394 Msa1367750:three_prime_UTR 35.0%
! GTTTTCATGAGCTATCTTGA+TGG - tig0018533:192946-192965 Msa1367750:intron 35.0%
! TGTGCTACTGCTATATATCT+AGG + tig0018533:193133-193152 None:intergenic 35.0%
! ATTTAATGGACCACACACTA+TGG - tig0018533:193224-193243 Msa1367750:intron 35.0%
ACACTATGGTATGATAGAGT+TGG - tig0018533:193238-193257 Msa1367750:intron 35.0%
CTAATCCTATTTGATCTCCT+GGG + tig0018533:194233-194252 None:intergenic 35.0%
TCTAATCCTATTTGATCTCC+TGG + tig0018533:194234-194253 None:intergenic 35.0%
GAGAAGGTCCAAAAGAATTA+GGG - tig0018533:194370-194389 Msa1367750:three_prime_UTR 35.0%
! AACAATGGCCCTAATTCTTT+TGG + tig0018533:194381-194400 None:intergenic 35.0%
GAGAAGGTCCAAAAGAATTA+GGG - tig0018533:194370-194389 Msa1367750:three_prime_UTR 35.0%
GAGAAGGTCAAAAAGAATCA+GGG - tig0018533:194724-194743 Msa1367750:CDS 35.0%
AAAAATGTGGAGAAACAAGC+TGG - tig0018533:195037-195056 Msa1367750:CDS 35.0%
AGCTGGAGATATCAAGAAAT+TGG - tig0018533:195054-195073 Msa1367750:CDS 35.0%
GAGTGCAGAAGTAATGTAAA+AGG - tig0018533:195138-195157 Msa1367750:CDS 35.0%
AATCTAGTCCAGAAAGAGAA+AGG - tig0018533:195360-195379 Msa1367750:five_prime_UTR 35.0%
CCTGTATAGGAAAGAGATAA+TGG + tig0018533:195441-195460 None:intergenic 35.0%
CCATTATCTCTTTCCTATAC+AGG - tig0018533:195438-195457 Msa1367750:intron 35.0%
TAACAACCCTCTTACTCATT+GGG - tig0018533:195476-195495 Msa1367750:intron 35.0%
AAAGAACCCAATGAGTAAGA+GGG + tig0018533:195485-195504 None:intergenic 35.0%
! AAATATTGGCTGTTGAGAGA+AGG - tig0018533:195665-195684 Msa1367750:intron 35.0%
! AATATTGGCTGTTGAGAGAA+GGG - tig0018533:195666-195685 Msa1367750:intron 35.0%
CAAGCTTATGTCTCAAAAGA+TGG + tig0018533:195725-195744 None:intergenic 35.0%
CCAAACATGATGAATGATTG+AGG + tig0018533:195876-195895 None:intergenic 35.0%
CCTCAATCATTCATCATGTT+TGG - tig0018533:195873-195892 Msa1367750:intron 35.0%
CACTGTATCACTAAAACATG+CGG + tig0018533:195946-195965 None:intergenic 35.0%
! AAATTTTCATTCCGCACAGA+AGG + tig0018533:196085-196104 None:intergenic 35.0%
! GTGCGGAATGAAAATTTTAG+TGG - tig0018533:196088-196107 Msa1367750:intron 35.0%
TTCAAATGCAAGAAATGGAC+GGG - tig0018533:196241-196260 Msa1367750:intron 35.0%
TTGAAGCAACTCTTCGAATT+CGG - tig0018533:196650-196669 Msa1367750:intron 35.0%
CTAATGGTGAATGTAGTGAA+AGG - tig0018533:196701-196720 Msa1367750:intron 35.0%
TCATCGCCAATATAGCTAAA+TGG + tig0018533:196738-196757 None:intergenic 35.0%
AACACTCTTCATATGTAGCA+TGG + tig0018533:196774-196793 None:intergenic 35.0%
TGAACAATTCCTTCCTCAAA+AGG + tig0018533:196829-196848 None:intergenic 35.0%
!! TTTTGAGGAAGGAATTGTTC+AGG - tig0018533:196828-196847 Msa1367750:intron 35.0%
! ATTAGTTAGTATCGAACTGG+TGG - tig0018533:196902-196921 Msa1367750:intron 35.0%
! TCTTGTTTCCTAAGACTCTT+AGG - tig0018533:197117-197136 Msa1367750:intron 35.0%
!!! TAAGAGGTTTTGGTTTGGTT+TGG - tig0018533:197141-197160 Msa1367750:intron 35.0%
TGCTGTAATGATACTGTACT+TGG - tig0018533:197183-197202 Msa1367750:intron 35.0%
! TCTCAGATACTTTTATCTGC+TGG + tig0018533:197238-197257 None:intergenic 35.0%
GGGAGCTTAAATTTGTAAAC+AGG + tig0018533:197403-197422 None:intergenic 35.0%
AGCTGAAACGTAGTGAAATA+AGG + tig0018533:197474-197493 None:intergenic 35.0%
! AACACTAATAGTGGCATTGA+CGG + tig0018533:197620-197639 None:intergenic 35.0%
! TGTGTCGATAACACTAATAG+TGG + tig0018533:197629-197648 None:intergenic 35.0%
TCTGTTACAAGGCTTGTATT+TGG - tig0018533:197679-197698 Msa1367750:five_prime_UTR 35.0%
!! ATTGTTTTATCTATCCCCTG+CGG - tig0018533:197772-197791 Msa1367750:intron 35.0%
TACAGTCCTTGATTTCTTGA+AGG - tig0018533:197849-197868 Msa1367750:intron 35.0%
ACAGTCCTTGATTTCTTGAA+GGG - tig0018533:197850-197869 Msa1367750:intron 35.0%
AGTTACCCTTCAAGAAATCA+AGG + tig0018533:197858-197877 None:intergenic 35.0%
CTTACAAGCCATCAAAAAGT+CGG + tig0018533:197936-197955 None:intergenic 35.0%
TCTGAAAATATCACGCCAAA+AGG + tig0018533:198148-198167 None:intergenic 35.0%
!!! GACTCGTTGTTTTTCAATTG+GGG - tig0018533:198233-198252 Msa1367750:five_prime_UTR 35.0%
CAATGGAGAAAGAGTCTGAA+AGG + tig0018533:191140-191159 None:intergenic 40.0%
CAGAGAAGAGAGCTAAAGAT+CGG + tig0018533:191252-191271 None:intergenic 40.0%
!! TAGTCGTTTTCTCTCTCACA+AGG - tig0018533:191349-191368 Msa1367750:three_prime_UTR 40.0%
!!! AGGGCCTGTTTTGTTTTGAT+TGG - tig0018533:191653-191672 Msa1367750:intron 40.0%
GAAGCTATTCGAGAAGAAGA+GGG - tig0018533:191804-191823 Msa1367750:intron 40.0%
ATTTGACCAGATTCGACAAG+TGG - tig0018533:191827-191846 Msa1367750:intron 40.0%
CTCTGAATCTGAACAGTCTT+AGG + tig0018533:191853-191872 None:intergenic 40.0%
CTAAGACTGTTCAGATTCAG+AGG - tig0018533:191851-191870 Msa1367750:intron 40.0%
TTCAGATTCAGAGGAAGAAG+AGG - tig0018533:191860-191879 Msa1367750:intron 40.0%
!!! AGAAGAGGATTTTGAAGCAG+AGG - tig0018533:191875-191894 Msa1367750:intron 40.0%
!!! GATTTTGAAGCAGAGGTTGA+AGG - tig0018533:191882-191901 Msa1367750:intron 40.0%
! CCAAATTTCTAGACAGCTCA+AGG + tig0018533:191945-191964 None:intergenic 40.0%
CCTTGAGCTGTCTAGAAATT+TGG - tig0018533:191942-191961 Msa1367750:intron 40.0%
GCTGTCTAGAAATTTGGATG+TGG - tig0018533:191948-191967 Msa1367750:intron 40.0%
GTATGGTTTAATCAGTCTGC+AGG + tig0018533:192234-192253 None:intergenic 40.0%
AATGGTTTGATCAGTCTGCA+GGG + tig0018533:192891-192910 None:intergenic 40.0%
AAATGGTTTGATCAGTCTGC+AGG + tig0018533:192892-192911 None:intergenic 40.0%
! TGAGCTATCTTGATGGATGT+AGG - tig0018533:192953-192972 Msa1367750:intron 40.0%
! GAGCTATCTTGATGGATGTA+GGG - tig0018533:192954-192973 Msa1367750:intron 40.0%
! ATCTTGATGGATGTAGGGAA+AGG - tig0018533:192959-192978 Msa1367750:intron 40.0%
CTCTATCATACCATAGTGTG+TGG + tig0018533:193237-193256 None:intergenic 40.0%
!! TAGAGTTGGTGTGTGAATGT+AGG - tig0018533:193252-193271 Msa1367750:intron 40.0%
AATGGTTTGATCAGTCTGCA+GGG + tig0018533:192891-192910 None:intergenic 40.0%
AAATGGTTTGATCAGTCTGC+AGG + tig0018533:192892-192911 None:intergenic 40.0%
! TGAGCTATCTTGATGGATGT+AGG - tig0018533:192953-192972 Msa1367750:intron 40.0%
! GAGCTATCTTGATGGATGTA+GGG - tig0018533:192954-192973 Msa1367750:intron 40.0%
! ATCTTGATGGATGTAGGGAA+AGG - tig0018533:192959-192978 Msa1367750:intron 40.0%
CTCTATCATACCATAGTGTG+TGG + tig0018533:193237-193256 None:intergenic 40.0%
!! TAGAGTTGGTGTGTGAATGT+AGG - tig0018533:193252-193271 Msa1367750:intron 40.0%
! AACACTACCTTTTCAGCTGA+AGG - tig0018533:194098-194117 Msa1367750:three_prime_UTR 40.0%
ACTTGAACCTTCAGCTGAAA+AGG + tig0018533:194108-194127 None:intergenic 40.0%
ATGGTCTCAGCGAAAAAGAA+AGG + tig0018533:194170-194189 None:intergenic 40.0%
GCTTGGATATCTATTAGGCA+TGG + tig0018533:194189-194208 None:intergenic 40.0%
CCAATCGGATATTGAATGCT+TGG + tig0018533:194206-194225 None:intergenic 40.0%
CCAAGCATTCAATATCCGAT+TGG - tig0018533:194203-194222 Msa1367750:three_prime_UTR 40.0%
AATATCCGATTGGAAAACCC+AGG - tig0018533:194213-194232 Msa1367750:three_prime_UTR 40.0%
GAAAACCCAGGAGATCAAAT+AGG - tig0018533:194225-194244 Msa1367750:three_prime_UTR 40.0%
ACCACCACCTACTACAATAT+CGG + tig0018533:194342-194361 None:intergenic 40.0%
! ATATTGTAGTAGGTGGTGGT+GGG - tig0018533:194342-194361 Msa1367750:three_prime_UTR 40.0%
GGAGAAGGTCCAAAAGAATT+AGG - tig0018533:194369-194388 Msa1367750:three_prime_UTR 40.0%
ATTAGGGCCATTGTTGAAGT+TGG - tig0018533:194386-194405 Msa1367750:exon 40.0%
!! TAGATGGTGGTGGAGAAATA+AGG - tig0018533:194429-194448 Msa1367750:CDS 40.0%
GGAGAAGGTCCAAAAGAATT+AGG - tig0018533:194369-194388 Msa1367750:three_prime_UTR 40.0%
! AACCATGGCCCTAATTCTTT+TGG + tig0018533:194561-194580 None:intergenic 40.0%
GGAGAAGGTCAAAAAGAATC+AGG - tig0018533:194723-194742 Msa1367750:CDS 40.0%
GTCAAAAAGAATCAGGGCAA+TGG - tig0018533:194730-194749 Msa1367750:CDS 40.0%
GCGAGATATTAGAAAAGCTG+AGG - tig0018533:194816-194835 Msa1367750:CDS 40.0%
TGAAATGGAGCTATGAAGCA+CGG + tig0018533:194976-194995 None:intergenic 40.0%
TGCTTCATAGCTCCATTTCA+AGG - tig0018533:194976-194995 Msa1367750:CDS 40.0%
! TTAGTGTGATGGCCTTGAAA+TGG + tig0018533:194991-195010 None:intergenic 40.0%
! GCTTTTACCTATATCAGGTG+TGG + tig0018533:195175-195194 None:intergenic 40.0%
AGACGAATCAACTACCAATC+TGG - tig0018533:195392-195411 Msa1367750:intron 40.0%
GAACACAGTTGAAACCAGAT+TGG + tig0018533:195409-195428 None:intergenic 40.0%
CTAACAACCCTCTTACTCAT+TGG - tig0018533:195475-195494 Msa1367750:intron 40.0%
CAAAGAACCCAATGAGTAAG+AGG + tig0018533:195486-195505 None:intergenic 40.0%
GAGTACTAATCATGCTCTCT+AGG + tig0018533:195618-195637 None:intergenic 40.0%
CAAACTGAAGTTGAACCATC+AGG + tig0018533:196059-196078 None:intergenic 40.0%
! ATCCGCTCCAAAGTTTTTCA+AGG + tig0018533:196142-196161 None:intergenic 40.0%
AGCAAGCATCAAACTTGTGA+GGG + tig0018533:196212-196231 None:intergenic 40.0%
AAGCAAGCATCAAACTTGTG+AGG + tig0018533:196213-196232 None:intergenic 40.0%
CAAGTTTGATGCTTGCTTCA+AGG - tig0018533:196215-196234 Msa1367750:intron 40.0%
TTACGTGCATTCAACTTACG+TGG + tig0018533:196419-196438 None:intergenic 40.0%
! AATGCACGTAACTTGCATGT+TGG - tig0018533:196428-196447 Msa1367750:intron 40.0%
TGAAGCAACTCTTCGAATTC+GGG - tig0018533:196651-196670 Msa1367750:intron 40.0%
! AGAGTGTTTGAAATGTGGGA+TGG - tig0018533:196786-196805 Msa1367750:intron 40.0%
!! GTCTCAAAACCTTTTGAGGA+AGG - tig0018533:196817-196836 Msa1367750:intron 40.0%
CCAAGCATGATGAATGATTG+AGG + tig0018533:197077-197096 None:intergenic 40.0%
CCTCAATCATTCATCATGCT+TGG - tig0018533:197074-197093 Msa1367750:intron 40.0%
! ACTCTTAGGCTAAGAGGTTT+TGG - tig0018533:197131-197150 Msa1367750:intron 40.0%
!!! TAGGCTAAGAGGTTTTGGTT+TGG - tig0018533:197136-197155 Msa1367750:intron 40.0%
AAAGTTAGAGCTAGAGCTAC+TGG - tig0018533:197310-197329 Msa1367750:intron 40.0%
AAGTTAGAGCTAGAGCTACT+GGG - tig0018533:197311-197330 Msa1367750:intron 40.0%
GAGAACCCAACAACCTAATT+GGG + tig0018533:197354-197373 None:intergenic 40.0%
TGAGAACCCAACAACCTAAT+TGG + tig0018533:197355-197374 None:intergenic 40.0%
TTGTTGGGTTCTCATCATCT+CGG - tig0018533:197361-197380 Msa1367750:intron 40.0%
AGCTTATTAAAGCGACTGCA+GGG - tig0018533:197443-197462 Msa1367750:intron 40.0%
!! TTTTGATGGCTTGTAAGACC+TGG - tig0018533:197939-197958 Msa1367750:intron 40.0%
AATGCGGACTTTAGCACATA+CGG - tig0018533:197994-198013 Msa1367750:intron 40.0%
GCATGACGACTTGAATTTCA+TGG - tig0018533:198046-198065 Msa1367750:intron 40.0%
!! TTGACTCCAACTTTCAGGTT+GGG + tig0018533:198108-198127 None:intergenic 40.0%
! ATTGACTCCAACTTTCAGGT+TGG + tig0018533:198109-198128 None:intergenic 40.0%
CAAGCGCGAGACTAATATTT+GGG - tig0018533:198172-198191 Msa1367750:five_prime_UTR 40.0%
GTGAATAAACACGCTCTTTG+TGG - tig0018533:198369-198388 Msa1367750:five_prime_UTR 40.0%
GAAGAGCGGAAAAATCGCAA+TGG + tig0018533:191187-191206 None:intergenic 45.0%
TCCGATCTGATGCTCGAAAA+TGG - tig0018533:191205-191224 Msa1367750:three_prime_UTR 45.0%
!! GCCATTTTCGAGCATCAGAT+CGG + tig0018533:191209-191228 None:intergenic 45.0%
ATGGCAATTGAAGCTCGTTG+AGG - tig0018533:191224-191243 Msa1367750:three_prime_UTR 45.0%
TTGCTATCTCAGGTCCTGTT+TGG - tig0018533:191551-191570 Msa1367750:three_prime_UTR 45.0%
GGAAGCTATTCGAGAAGAAG+AGG - tig0018533:191803-191822 Msa1367750:intron 45.0%
! ATGTAGGGAAAGGCATACAG+TGG - tig0018533:192969-192988 Msa1367750:intron 45.0%
! ATGTAGGGAAAGGCATACAG+TGG - tig0018533:192969-192988 Msa1367750:intron 45.0%
TTATAGAGGGAATCACGCGT+GGG + tig0018533:194039-194058 None:intergenic 45.0%
TTTATAGAGGGAATCACGCG+TGG + tig0018533:194040-194059 None:intergenic 45.0%
! GATCTCCTGGGTTTTCCAAT+CGG + tig0018533:194221-194240 None:intergenic 45.0%
AGGATTAGAGTTCGATGCGA+TGG - tig0018533:194245-194264 Msa1367750:three_prime_UTR 45.0%
!! ATGACGGATGGTGTTGAAGT+TGG - tig0018533:194275-194294 Msa1367750:three_prime_UTR 45.0%
AGGAGGACCGATATTGTAGT+AGG - tig0018533:194332-194351 Msa1367750:three_prime_UTR 45.0%
AGGACCGATATTGTAGTAGG+TGG - tig0018533:194335-194354 Msa1367750:three_prime_UTR 45.0%
ACCGATATTGTAGTAGGTGG+TGG - tig0018533:194338-194357 Msa1367750:three_prime_UTR 45.0%
! GATATTGTAGTAGGTGGTGG+TGG - tig0018533:194341-194360 Msa1367750:three_prime_UTR 45.0%
! TATTGTAGTAGGTGGTGGTG+GGG - tig0018533:194343-194362 Msa1367750:three_prime_UTR 45.0%
!! TGGTGGTGGAGAAATAAGGA+TGG - tig0018533:194433-194452 Msa1367750:CDS 45.0%
GGTGGAGAAATAAGGATGGA+TGG - tig0018533:194437-194456 Msa1367750:CDS 45.0%
! AGGATGGATGGTGTTGAAGT+TGG - tig0018533:194449-194468 Msa1367750:CDS 45.0%
! ATGGATGGTGTTGAAGTTGG+CGG - tig0018533:194452-194471 Msa1367750:CDS 45.0%
AGGAGGACAGATGGTGTAAT+AGG - tig0018533:194512-194531 Msa1367750:intron 45.0%
AGGACAGATGGTGTAATAGG+TGG - tig0018533:194515-194534 Msa1367750:intron 45.0%
ACAGATGGTGTAATAGGTGG+TGG - tig0018533:194518-194537 Msa1367750:intron 45.0%
! ATGGTGTAATAGGTGGTGGT+GGG - tig0018533:194522-194541 Msa1367750:intron 45.0%
GTCCAAAAGAATTAGGGCCA+TGG - tig0018533:194376-194395 Msa1367750:three_prime_UTR 45.0%
ATTAGGGCCATGGTTGAAGT+TGG - tig0018533:194566-194585 Msa1367750:intron 45.0%
!! TAGATGGTGGTGGAGAAATG+AGG - tig0018533:194609-194628 Msa1367750:intron 45.0%
! AGGATGGATGGTGTTGAAGT+TGG - tig0018533:194449-194468 Msa1367750:CDS 45.0%
! ATGGATGGTGTTGAAGTTGG+CGG - tig0018533:194452-194471 Msa1367750:CDS 45.0%
ACCACCATCTACAACTCCAT+CGG + tig0018533:194696-194715 None:intergenic 45.0%
ATGCATTTGACACACGGACA+CGG - tig0018533:194893-194912 Msa1367750:CDS 45.0%
TGTGTCTGACACGACACTTA+TGG + tig0018533:194926-194945 None:intergenic 45.0%
AATCGATCGGAGAGTTCTAC+CGG + tig0018533:195247-195266 None:intergenic 45.0%
GATCTGCACCTTTCTCTTTC+TGG + tig0018533:195371-195390 None:intergenic 45.0%
GAAGCCACTGAGAACTAGTA+TGG - tig0018533:195971-195990 Msa1367750:intron 45.0%
CCACTGAGAACTAGTATGGT+GGG - tig0018533:195975-195994 Msa1367750:intron 45.0%
! AGCTTGCCTTCAGCAAGTTT+TGG - tig0018533:195998-196017 Msa1367750:intron 45.0%
! GCTTGCCTTCAGCAAGTTTT+GGG - tig0018533:195999-196018 Msa1367750:intron 45.0%
!! CTGTTCCCAAAACTTGCTGA+AGG + tig0018533:196007-196026 None:intergenic 45.0%
!!! CTTCAGCAAGTTTTGGGAAC+AGG - tig0018533:196005-196024 Msa1367750:intron 45.0%
! TCAGTTTGAAGCCTTCTGTG+CGG - tig0018533:196071-196090 Msa1367750:intron 45.0%
! CGCCTTGAAAAACTTTGGAG+CGG - tig0018533:196137-196156 Msa1367750:intron 45.0%
AACTCTTCGAATTCGGGAGA+TGG - tig0018533:196657-196676 Msa1367750:intron 45.0%
CCTCTTAGCCTAAGAGTCTT+AGG + tig0018533:197128-197147 None:intergenic 45.0%
CCTAAGACTCTTAGGCTAAG+AGG - tig0018533:197125-197144 Msa1367750:intron 45.0%
AACAACCTAATTGGGCCAGT+CGG + tig0018533:197346-197365 None:intergenic 45.0%
! ACTGGCCCAATTAGGTTGTT+GGG - tig0018533:197346-197365 Msa1367750:intron 45.0%
AGCTCTTCTGTTGTTGGGTT+GGG + tig0018533:197427-197446 None:intergenic 45.0%
AAGCTCTTCTGTTGTTGGGT+TGG + tig0018533:197428-197447 None:intergenic 45.0%
GAGCTTATTAAAGCGACTGC+AGG - tig0018533:197442-197461 Msa1367750:intron 45.0%
AGAAGACAATGCAAACCGCA+GGG + tig0018533:197790-197809 None:intergenic 45.0%
TGTCAGGGAAACATTGCTGA+AGG - tig0018533:197899-197918 Msa1367750:intron 45.0%
CTGGATTGCTCAGCTGAATT+GGG - tig0018533:197958-197977 Msa1367750:intron 45.0%
TCAGCTGAATTGGGATCTGT+TGG - tig0018533:197967-197986 Msa1367750:intron 45.0%
ATGTGCTAAAGTCCGCATTC+TGG + tig0018533:197993-198012 None:intergenic 45.0%
ATGCGGACTTTAGCACATAC+GGG - tig0018533:197995-198014 Msa1367750:intron 45.0%
GCTTCTACGGGTAATGTTGT+GGG - tig0018533:198023-198042 Msa1367750:intron 45.0%
CTTCTACGGGTAATGTTGTG+GGG - tig0018533:198024-198043 Msa1367750:intron 45.0%
! CCAAATATTAGTCTCGCGCT+TGG + tig0018533:198174-198193 None:intergenic 45.0%
CCAAGCGCGAGACTAATATT+TGG - tig0018533:198171-198190 Msa1367750:five_prime_UTR 45.0%
CTTAGGCCACTTGTCGAATC+TGG + tig0018533:191836-191855 None:intergenic 50.0%
ATGCGATGGCGAAAGGATGA+CGG - tig0018533:194259-194278 Msa1367750:three_prime_UTR 50.0%
! ACGGATGGTGTTGAAGTTGG+CGG - tig0018533:194278-194297 Msa1367750:three_prime_UTR 50.0%
AGGGCCATTGTTGAAGTTGG+TGG - tig0018533:194389-194408 Msa1367750:exon 50.0%
!! GCCATTGTTGAAGTTGGTGG+CGG - tig0018533:194392-194411 Msa1367750:exon 50.0%
ACCGCCACCAACTTCAACAA+TGG + tig0018533:194396-194415 None:intergenic 50.0%
!! ATTGTTGAAGTTGGTGGCGG+TGG - tig0018533:194395-194414 Msa1367750:exon 50.0%
! AATGAGGCTGTAGATGGTGG+TGG - tig0018533:194419-194438 Msa1367750:CDS 50.0%
! GATGGTGTAATAGGTGGTGG+TGG - tig0018533:194521-194540 Msa1367750:intron 50.0%
! TGGTGTAATAGGTGGTGGTG+GGG - tig0018533:194523-194542 Msa1367750:intron 50.0%
!! TAATAGGTGGTGGTGGGGAA+AGG - tig0018533:194528-194547 Msa1367750:intron 50.0%
! AATGAGGCTGTAGATGGTGG+TGG - tig0018533:194419-194438 Msa1367750:CDS 50.0%
!! TGGTGGTGGAGAAATGAGGA+TGG - tig0018533:194613-194632 Msa1367750:intron 50.0%
GGTGGAGAAATGAGGATGGA+TGG - tig0018533:194617-194636 Msa1367750:intron 50.0%
AGGACCGATGGAGTTGTAGA+TGG - tig0018533:194689-194708 Msa1367750:CDS 50.0%
ACCGATGGAGTTGTAGATGG+TGG - tig0018533:194692-194711 Msa1367750:CDS 50.0%
! GATGGAGTTGTAGATGGTGG+TGG - tig0018533:194695-194714 Msa1367750:CDS 50.0%
!! TTGTAGATGGTGGTGGCGAA+AGG - tig0018533:194702-194721 Msa1367750:CDS 50.0%
ATCAGGGCAATGGATGACGT+TGG - tig0018533:194740-194759 Msa1367750:CDS 50.0%
GGAGATGTACATGGTGGTTG+TGG - tig0018533:194794-194813 Msa1367750:CDS 50.0%
! AAGTGTCGTGTCAGACACAC+CGG - tig0018533:194927-194946 Msa1367750:CDS 50.0%
TATGAAGCACGGACACTCCT+CGG + tig0018533:194965-194984 None:intergenic 50.0%
! GCGCGGCTTTTACCTATATC+AGG + tig0018533:195180-195199 None:intergenic 50.0%
CGAGGACATCACGGATTTAG+CGG + tig0018533:195210-195229 None:intergenic 50.0%
GCCACTGAGAACTAGTATGG+TGG - tig0018533:195974-195993 Msa1367750:intron 50.0%
! CCCACCATACTAGTTCTCAG+TGG + tig0018533:195978-195997 None:intergenic 50.0%
AACAGGCAAGAAGAGACAGC+CGG - tig0018533:196022-196041 Msa1367750:intron 50.0%
! CCATCAGGCATCTCTTTTCC+CGG + tig0018533:196044-196063 None:intergenic 50.0%
GCAGGCGCCTTGAAAAACTT+TGG - tig0018533:196132-196151 Msa1367750:intron 50.0%
GATGTGAAGTGTGCAGACAG+CGG - tig0018533:196159-196178 Msa1367750:intron 50.0%
TTCGAATTCGGGAGATGGAG+AGG - tig0018533:196662-196681 Msa1367750:intron 50.0%
AATTCGGGAGATGGAGAGGA+CGG - tig0018533:196666-196685 Msa1367750:intron 50.0%
ACGGCGAATGAGGAGACTAA+TGG - tig0018533:196685-196704 Msa1367750:intron 50.0%
TGAGAGAGAGAGAGAGAGAG+AGG - tig0018533:197025-197044 Msa1367750:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - tig0018533:197026-197045 Msa1367750:intron 50.0%
ACTGGGAAAGTTGTTCCGAC+TGG - tig0018533:197328-197347 Msa1367750:intron 50.0%
! TTGTTCCGACTGGCCCAATT+AGG - tig0018533:197338-197357 Msa1367750:intron 50.0%
! GACTGGCCCAATTAGGTTGT+TGG - tig0018533:197345-197364 Msa1367750:intron 50.0%
!! CTTCTGTTGTTGGGTTGGGA+GGG + tig0018533:197423-197442 None:intergenic 50.0%
!! TCTTCTGTTGTTGGGTTGGG+AGG + tig0018533:197424-197443 None:intergenic 50.0%
GAAGACAATGCAAACCGCAG+GGG + tig0018533:197789-197808 None:intergenic 50.0%
GAGAAGACAATGCAAACCGC+AGG + tig0018533:197791-197810 None:intergenic 50.0%
CCAATTCAGCTGAGCAATCC+AGG + tig0018533:197960-197979 None:intergenic 50.0%
CCTGGATTGCTCAGCTGAAT+TGG - tig0018533:197957-197976 Msa1367750:intron 50.0%
TGCGGACTTTAGCACATACG+GGG - tig0018533:197996-198015 Msa1367750:intron 50.0%
ACTTTAGCACATACGGGGAC+TGG - tig0018533:198001-198020 Msa1367750:intron 50.0%
GGCTTCTACGGGTAATGTTG+TGG - tig0018533:198022-198041 Msa1367750:intron 50.0%
ATCTAGACTCCGACACGTTC+CGG - tig0018533:198078-198097 Msa1367750:intron 50.0%
!! AACTTTCAGGTTGGGTCTGC+CGG + tig0018533:198100-198119 None:intergenic 50.0%
ACTATTGCTGCTGTGCTCGT+TGG - tig0018533:198196-198215 Msa1367750:five_prime_UTR 50.0%
CGAGCATCAGATCGGAAGAG+CGG + tig0018533:191201-191220 None:intergenic 55.0%
GAGTTCGATGCGATGGCGAA+AGG - tig0018533:194252-194271 Msa1367750:three_prime_UTR 55.0%
!! GATGGCGAAAGGATGACGGA+TGG - tig0018533:194263-194282 Msa1367750:three_prime_UTR 55.0%
! GATGGTGTTGAAGTTGGCGG+TGG - tig0018533:194281-194300 Msa1367750:three_prime_UTR 55.0%
!! TAGTAGGTGGTGGTGGGGAA+AGG - tig0018533:194348-194367 Msa1367750:three_prime_UTR 55.0%
GGTGGCAATGAGGCTGTAGA+TGG - tig0018533:194413-194432 Msa1367750:CDS 55.0%
GGCAATGAGGCTGTAGATGG+TGG - tig0018533:194416-194435 Msa1367750:CDS 55.0%
! GATGGTGTTGAAGTTGGCGG+TGG - tig0018533:194281-194300 Msa1367750:three_prime_UTR 55.0%
AGGGCCATGGTTGAAGTTGG+TGG - tig0018533:194569-194588 Msa1367750:intron 55.0%
!! GCCATGGTTGAAGTTGGTGG+CGG - tig0018533:194572-194591 Msa1367750:intron 55.0%
ACCGCCACCAACTTCAACCA+TGG + tig0018533:194576-194595 None:intergenic 55.0%
!! ATGGTTGAAGTTGGTGGCGG+TGG - tig0018533:194575-194594 Msa1367750:intron 55.0%
GGTGGCAATGAGGCTGTAGA+TGG - tig0018533:194413-194432 Msa1367750:CDS 55.0%
GGCAATGAGGCTGTAGATGG+TGG - tig0018533:194416-194435 Msa1367750:CDS 55.0%
! GATGGTGTTGAAGTTGGCGG+TGG - tig0018533:194281-194300 Msa1367750:three_prime_UTR 55.0%
!! ATGGTGGTGGCGAAAGGAGA+AGG - tig0018533:194708-194727 Msa1367750:CDS 55.0%
AGGGCAATGGATGACGTTGG+TGG - tig0018533:194743-194762 Msa1367750:CDS 55.0%
!! ATGGATGACGTTGGTGGCGA+TGG - tig0018533:194749-194768 Msa1367750:CDS 55.0%
GGTGGCGATGGAGATGTACA+TGG - tig0018533:194785-194804 Msa1367750:CDS 55.0%
GGCGATGGAGATGTACATGG+TGG - tig0018533:194788-194807 Msa1367750:CDS 55.0%
AGTGTCGTGTCAGACACACC+GGG - tig0018533:194928-194947 Msa1367750:CDS 55.0%
GTGACGGCCACACCTGATAT+AGG - tig0018533:195165-195184 Msa1367750:CDS 55.0%
GATTTAGCGGAGGCTTTGCG+CGG + tig0018533:195197-195216 None:intergenic 55.0%
GGACATCACGGATTTAGCGG+AGG + tig0018533:195207-195226 None:intergenic 55.0%
CCATTGCGACGAGGACATCA+CGG + tig0018533:195219-195238 None:intergenic 55.0%
TGATGTCCTCGTCGCAATGG+CGG - tig0018533:195219-195238 Msa1367750:CDS 55.0%
GGCTGTTGAGAGAAGGGAGA+AGG - tig0018533:195672-195691 Msa1367750:intron 55.0%
ACAGGCAAGAAGAGACAGCC+GGG - tig0018533:196023-196042 Msa1367750:intron 55.0%
CCGGGAAAAGAGATGCCTGA+TGG - tig0018533:196041-196060 Msa1367750:intron 55.0%
AGAGAGAGAGAGAGAGAGGG+AGG - tig0018533:197029-197048 Msa1367750:intron 55.0%
GAGAGAGAGAGAGAGAGGGA+GGG - tig0018533:197030-197049 Msa1367750:intron 55.0%
GGGTTCTCATCATCTCGGTG+TGG - tig0018533:197366-197385 Msa1367750:intron 55.0%
GGGATCTGTTGGCCAGAATG+CGG - tig0018533:197978-197997 Msa1367750:intron 55.0%
!! CATACGGGGACTGGCTTCTA+CGG - tig0018533:198010-198029 Msa1367750:intron 55.0%
!! ATACGGGGACTGGCTTCTAC+GGG - tig0018533:198011-198030 Msa1367750:intron 55.0%
GGCAGACCCAACCTGAAAGT+TGG - tig0018533:198099-198118 Msa1367750:intron 55.0%
!!! GCTGTGCTCGTTGGCTCTTT+TGG - tig0018533:198205-198224 Msa1367750:five_prime_UTR 55.0%
GTTGAAGTTGGCGGTGGCAC+CGG - tig0018533:194287-194306 Msa1367750:three_prime_UTR 60.0%
!! CTGAAGGTGGTGGTGGCGAA+AGG - tig0018533:194312-194331 Msa1367750:three_prime_UTR 60.0%
!! AAGGTGGTGGTGGCGAAAGG+AGG - tig0018533:194315-194334 Msa1367750:three_prime_UTR 60.0%
!! GTGGTGGTGGGGAAAGGAGA+AGG - tig0018533:194354-194373 Msa1367750:three_prime_UTR 60.0%
!! AGTTGGTGGCGGTGGCAATG+AGG - tig0018533:194403-194422 Msa1367750:CDS 60.0%
! GGTGTTGAAGTTGGCGGTGG+CGG - tig0018533:194284-194303 Msa1367750:three_prime_UTR 60.0%
! ACCAGAGCTGAAGGTGGTGG+TGG - tig0018533:194485-194504 Msa1367750:intron 60.0%
!! CTGAAGGTGGTGGTGGCGAA+AGG - tig0018533:194312-194331 Msa1367750:three_prime_UTR 60.0%
!! AAGGTGGTGGTGGCGAAAGG+AGG - tig0018533:194315-194334 Msa1367750:three_prime_UTR 60.0%
GGTGGCGAAAGGAGGACAGA+TGG - tig0018533:194503-194522 Msa1367750:intron 60.0%
!! GTGGTGGTGGGGAAAGGAGA+AGG - tig0018533:194354-194373 Msa1367750:three_prime_UTR 60.0%
!! AGTTGGTGGCGGTGGCAATG+AGG - tig0018533:194403-194422 Msa1367750:CDS 60.0%
GTTGAAGTTGGCGGTGGCAC+CGG - tig0018533:194287-194306 Msa1367750:three_prime_UTR 60.0%
!! CTGAAGGTGGTGGAGGGGAA+AGG - tig0018533:194666-194685 Msa1367750:CDS 60.0%
!! AAGGTGGTGGAGGGGAAAGG+AGG - tig0018533:194669-194688 Msa1367750:CDS 60.0%
!! GATGACGTTGGTGGCGATGG+CGG - tig0018533:194752-194771 Msa1367750:CDS 60.0%
! ACGGACACTCCTCGGATTGG+GGG + tig0018533:194957-194976 None:intergenic 60.0%
CACGGACACTCCTCGGATTG+GGG + tig0018533:194958-194977 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+GGG + tig0018533:194959-194978 None:intergenic 60.0%
AGCACGGACACTCCTCGGAT+TGG + tig0018533:194960-194979 None:intergenic 60.0%
CCGTGATGTCCTCGTCGCAA+TGG - tig0018533:195216-195235 Msa1367750:CDS 60.0%
GATGGAGAGGACGGCGAATG+AGG - tig0018533:196675-196694 Msa1367750:intron 60.0%
AGAGAGAGAGAGAGGGAGGG+AGG - tig0018533:197033-197052 Msa1367750:intron 60.0%
GAGAGAGAGAGAGGGAGGGA+GGG - tig0018533:197034-197053 Msa1367750:intron 60.0%
TTGGGTCTGCCGGAACGTGT+CGG + tig0018533:198090-198109 None:intergenic 60.0%
! ACCGGAGCTGAAGGTGGTGG+TGG - tig0018533:194305-194324 Msa1367750:three_prime_UTR 65.0%
GCCACCACCACCTTCAGCTC+CGG + tig0018533:194309-194328 None:intergenic 65.0%
! GTTGAAGTTGGCGGTGGCGG+TGG - tig0018533:194461-194480 Msa1367750:CDS 65.0%
GGTGGCACCAGAGCTGAAGG+TGG - tig0018533:194479-194498 Msa1367750:intron 65.0%
GGCACCAGAGCTGAAGGTGG+TGG - tig0018533:194482-194501 Msa1367750:intron 65.0%
GCCACCACCACCTTCAGCTC+TGG + tig0018533:194309-194328 None:intergenic 65.0%
! ACCGGAGCTGAAGGTGGTGG+AGG - tig0018533:194305-194324 Msa1367750:three_prime_UTR 65.0%
CCCTCCACCACCTTCAGCTC+CGG + tig0018533:194663-194682 None:intergenic 65.0%
!! CCGGAGCTGAAGGTGGTGGA+GGG - tig0018533:194660-194679 Msa1367750:intron 65.0%
!! CGGAGCTGAAGGTGGTGGAG+GGG - tig0018533:194661-194680 Msa1367750:intron 65.0%
GGAGGGGAAAGGAGGACCGA+TGG - tig0018533:194677-194696 Msa1367750:CDS 65.0%
!! GTTGGTGGCGATGGCGGTTG+CGG - tig0018533:194758-194777 Msa1367750:CDS 65.0%
!! TCCTCGGATTGGGGGTGTCC+CGG + tig0018533:194949-194968 None:intergenic 65.0%
CCTCGTCGCAATGGCGGTTC+CGG - tig0018533:195225-195244 Msa1367750:CDS 65.0%
! GGTGGCACCGGAGCTGAAGG+TGG - tig0018533:194299-194318 Msa1367750:three_prime_UTR 70.0%
! GGCACCGGAGCTGAAGGTGG+TGG - tig0018533:194302-194321 Msa1367750:three_prime_UTR 70.0%
GGCGGTGGCACCAGAGCTGA+AGG - tig0018533:194476-194495 Msa1367750:intron 70.0%
! GGTGGCACCGGAGCTGAAGG+TGG - tig0018533:194299-194318 Msa1367750:three_prime_UTR 70.0%
! GGCACCGGAGCTGAAGGTGG+TGG - tig0018533:194302-194321 Msa1367750:three_prime_UTR 70.0%
! GATGGCGGTTGCGGTGGTGG+TGG - tig0018533:194767-194786 Msa1367750:CDS 70.0%
!! GGTTGCGGTGGTGGTGGCGA+TGG - tig0018533:194773-194792 Msa1367750:CDS 70.0%
ACCGGGACACCCCCAATCCG+AGG - tig0018533:194945-194964 Msa1367750:CDS 70.0%
CCGGAACCGCCATTGCGACG+AGG + tig0018533:195228-195247 None:intergenic 70.0%
! GGCGGTGGCACCGGAGCTGA+AGG - tig0018533:194296-194315 Msa1367750:three_prime_UTR 75.0%
! GGCGGTGGCACCGGAGCTGA+AGG - tig0018533:194296-194315 Msa1367750:three_prime_UTR 75.0%
! GGTGGCGATGGCGGTTGCGG+TGG - tig0018533:194761-194780 Msa1367750:CDS 75.0%
! GGCGATGGCGGTTGCGGTGG+TGG - tig0018533:194764-194783 Msa1367750:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0018533 gene 191124 198397 191124 ID=Msa1367750;Name=Msa1367750
tig0018533 mRNA 191124 198397 191124 ID=Msa1367750-mRNA-1;Parent=Msa1367750;Name=Msa1367750-mRNA-1;_AED=0.23;_eAED=0.23;_QI=430|1|1|1|0.42|0.37|8|1330|252
tig0018533 exon 191124 191616 191124 ID=Msa1367750-mRNA-1:exon:122;Parent=Msa1367750-mRNA-1
tig0018533 exon 192672 192873 192672 ID=Msa1367750-mRNA-1:exon:121;Parent=Msa1367750-mRNA-1
tig0018533 exon 193259 193557 193259 ID=Msa1367750-mRNA-1:exon:120;Parent=Msa1367750-mRNA-1
tig0018533 exon 194062 194486 194062 ID=Msa1367750-mRNA-1:exon:119;Parent=Msa1367750-mRNA-1
tig0018533 exon 194664 195407 194664 ID=Msa1367750-mRNA-1:exon:118;Parent=Msa1367750-mRNA-1
tig0018533 exon 196534 196546 196534 ID=Msa1367750-mRNA-1:exon:117;Parent=Msa1367750-mRNA-1
tig0018533 exon 197618 197713 197618 ID=Msa1367750-mRNA-1:exon:116;Parent=Msa1367750-mRNA-1
tig0018533 exon 198151 198397 198151 ID=Msa1367750-mRNA-1:exon:115;Parent=Msa1367750-mRNA-1
tig0018533 five_prime_UTR 198151 198397 198151 ID=Msa1367750-mRNA-1:five_prime_utr;Parent=Msa1367750-mRNA-1
tig0018533 five_prime_UTR 197618 197713 197618 ID=Msa1367750-mRNA-1:five_prime_utr;Parent=Msa1367750-mRNA-1
tig0018533 five_prime_UTR 196534 196546 196534 ID=Msa1367750-mRNA-1:five_prime_utr;Parent=Msa1367750-mRNA-1
tig0018533 five_prime_UTR 195334 195407 195334 ID=Msa1367750-mRNA-1:five_prime_utr;Parent=Msa1367750-mRNA-1
tig0018533 CDS 194664 195333 194664 ID=Msa1367750-mRNA-1:cds;Parent=Msa1367750-mRNA-1
tig0018533 CDS 194398 194486 194398 ID=Msa1367750-mRNA-1:cds;Parent=Msa1367750-mRNA-1
tig0018533 three_prime_UTR 194062 194397 194062 ID=Msa1367750-mRNA-1:three_prime_utr;Parent=Msa1367750-mRNA-1
tig0018533 three_prime_UTR 193259 193557 193259 ID=Msa1367750-mRNA-1:three_prime_utr;Parent=Msa1367750-mRNA-1
tig0018533 three_prime_UTR 192672 192873 192672 ID=Msa1367750-mRNA-1:three_prime_utr;Parent=Msa1367750-mRNA-1
tig0018533 three_prime_UTR 191124 191616 191124 ID=Msa1367750-mRNA-1:three_prime_utr;Parent=Msa1367750-mRNA-1
Gene Sequence

>Msa1367750

ATGCCTAATAGATATCCAAGCATTCAATATCCGATTGGAAAACCCAGGAGATCAAATAGGATTAGAGTTCGATGCGATGGCGAAAGGATGACGGATGGTGTTGAAGTTGGCGGTGGCACCGGAGCTGAAGGTGGTGGTGGCGAAAGGAGGACCGATATTGTAGTAGGTGGTGGTGGGGAAAGGAGAAGGTCCAAAAGAATTAGGGCCATTGTTGAAGTTGGTGGCGGTGGCAATGAGGCTGTAGATGGTGGTGGAGAAATAAGGATGGATGGTGTTGAAGTTGGCGGTGGCGGTGGCACCAGAGCTGAAGGTGGTGGTGGCGAAAGGAGGACAGATGGTGTAATAGGTGGTGGTGGGGAAAGGAGAAGGTCCAAAAGAATTAGGGCCATGGTTGAAGTTGGTGGCGGTGGCAATGAGGCTGTAGATGGTGGTGGAGAAATGAGGATGGATGGTGTTGAAGTTGGCGGTGGCACCGGAGCTGAAGGTGGTGGAGGGGAAAGGAGGACCGATGGAGTTGTAGATGGTGGTGGCGAAAGGAGAAGGTCAAAAAGAATCAGGGCAATGGATGACGTTGGTGGCGATGGCGGTTGCGGTGGTGGTGGCGATGGAGATGTACATGGTGGTTGTGGCGAGATATTAGAAAAGCTGAGGAGTGAACTCATTGAAACGAATAAAAATGTGGAGAAACAAGCTGGAGATATCAAGAAATTGGAAGAAACATTGAGCAGTTTACAAATAAGCATTGAACAATTTACATGA
Protein sequence

>Msa1367750

MPNRYPSIQYPIGKPRRSNRIRVRCDGERMTDGVEVGGGTGAEGGGGERRTDIVVGGGGERRRSKRIRAIVEVGGGGNEAVDGGGEIRMDGVEVGGGGGTRAEGGGGERRTDGVIGGGGERRRSKRIRAMVEVGGGGNEAVDGGGEMRMDGVEVGGGTGAEGGGGERRTDGVVDGGGERRRSKRIRAMDDVGGDGGCGGGGDGDVHGGCGEILEKLRSELIETNKNVEKQAGDIKKLEETLSSLQISIEQFT*