AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1414690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 224 sgRNAs with CRISPR-Local

Find 477 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTGCACCTTTCTCTTTC+TGG 0.090871 tig0024140:+6111 Msa1414690:intergenic
ATTTATTGACTCCAACTTTC+AGG 0.166655 tig0024140:+3370 Msa1414690:intergenic
TGAATTCCATTTAGCTATAT+TGG 0.219632 tig0024140:-4751 Msa1414690:three_prime_UTR
GGAGAAGGTCCAAAAGAATT+AGG 0.229212 tig0024140:-6930 Msa1414690:CDS
GGAGAAGGTCCAAAAGAATT+AGG 0.229212 tig0024140:-7110 Msa1414690:CDS
CCTGGATTGCTCAGCTGAAT+TGG 0.251429 tig0024140:-3523 Msa1414690:three_prime_UTR
GCTGTGCTCGTTGGCTCTTT+TGG 0.262041 tig0024140:-3275 Msa1414690:three_prime_UTR
AGCTTGCCTTCAGCAAGTTT+TGG 0.267697 tig0024140:-5481 Msa1414690:three_prime_UTR
AACAATGGCCCTAATTCTTT+TGG 0.272373 tig0024140:+7101 Msa1414690:intergenic
AACCATGGCCCTAATTCTTT+TGG 0.275168 tig0024140:+6921 Msa1414690:intergenic
AATAAATTTATCGGGCCTTT+TGG 0.277715 tig0024140:-3350 Msa1414690:three_prime_UTR
CCAAGCGCGAGACTAATATT+TGG 0.280273 tig0024140:-3309 Msa1414690:three_prime_UTR
TCCGATCTGATGCTCGAAAA+TGG 0.289314 tig0024140:-10274 Msa1414690:five_prime_UTR
AGCTGGAGATATCAAGAAAT+TGG 0.296400 tig0024140:-6425 Msa1414690:CDS
TGAATGCTTGGATATCTATT+AGG 0.305363 tig0024140:+7288 Msa1414690:intergenic
TTGAAGCAACTCTTCGAATT+CGG 0.314367 tig0024140:-4830 Msa1414690:three_prime_UTR
TCATCGCCAATATAGCTAAA+TGG 0.320678 tig0024140:+4745 Msa1414690:intergenic
TGAAGCAACTCTTCGAATTC+GGG 0.326058 tig0024140:-4829 Msa1414690:three_prime_UTR
GAGTCAATAAATAAATTTAT+CGG 0.329465 tig0024140:-3359 Msa1414690:three_prime_UTR
CCATTATCTCTTTCCTATAC+AGG 0.329932 tig0024140:-6041 Msa1414690:intron
GTAACAAAGCACATATAAAA+AGG 0.337845 tig0024140:-6157 Msa1414690:three_prime_UTR
GAGTGCAGAAGTAATGTAAA+AGG 0.340817 tig0024140:-6341 Msa1414690:three_prime_UTR
GGCGATGGCGGTTGCGGTGG+TGG 0.346111 tig0024140:-6715 Msa1414690:CDS
ATCTAGACTCCGACACGTTC+CGG 0.356468 tig0024140:-3402 Msa1414690:three_prime_UTR
CTCTGAATCTGAACAGTCTT+AGG 0.361731 tig0024140:+9629 Msa1414690:intergenic
CAAGTTTGATGCTTGCTTCA+AGG 0.362213 tig0024140:-5264 Msa1414690:three_prime_UTR
CCTCGTCGCAATGGCGGTTC+CGG 0.368561 tig0024140:-6254 Msa1414690:three_prime_UTR
CTTAGGCCACTTGTCGAATC+TGG 0.370934 tig0024140:+9646 Msa1414690:intergenic
TCTAATCCTATTTGATCTCC+TGG 0.371886 tig0024140:+7248 Msa1414690:intergenic
AACTTTCAGGTTGGGTCTGC+CGG 0.373589 tig0024140:+3383 Msa1414690:intergenic
GGATATTCAAATGCAAGAAA+TGG 0.373656 tig0024140:-5243 Msa1414690:three_prime_UTR
GTGAATAAACACGCTCTTTG+TGG 0.376971 tig0024140:-3111 Msa1414690:three_prime_UTR
TTGACTCCAACTTTCAGGTT+GGG 0.377248 tig0024140:+3375 Msa1414690:intergenic
CCCTCCACCACCTTCAGCTC+CGG 0.377700 tig0024140:+6819 Msa1414690:intergenic
GAAACAATGTTTACCTGTAT+AGG 0.381243 tig0024140:+6028 Msa1414690:intergenic
AGGAGGACAGATGGTGTAAT+AGG 0.382120 tig0024140:-6967 Msa1414690:CDS
GGTGTTGAAGTTGGCGGTGG+CGG 0.382336 tig0024140:-7021 Msa1414690:CDS
TTTCACTTCGCAAATTTCAT+TGG 0.387078 tig0024140:-10195 Msa1414690:five_prime_UTR
ATGTGCTAAAGTCCGCATTC+TGG 0.389059 tig0024140:+3490 Msa1414690:intergenic
AACTTGTTGATGCTTCAATA+TGG 0.391748 tig0024140:+7348 Msa1414690:intergenic
GAAAACCCAGGAGATCAAAT+AGG 0.395401 tig0024140:-7254 Msa1414690:CDS
TGAACAATTCCTTCCTCAAA+AGG 0.408776 tig0024140:+4654 Msa1414690:intergenic
GCCACCACCACCTTCAGCTC+TGG 0.410878 tig0024140:+6993 Msa1414690:intergenic
GCATGACGACTTGAATTTCA+TGG 0.412646 tig0024140:-3434 Msa1414690:three_prime_UTR
CCAATTCAGCTGAGCAATCC+AGG 0.420223 tig0024140:+3523 Msa1414690:intergenic
CTGGATTGCTCAGCTGAATT+GGG 0.421005 tig0024140:-3522 Msa1414690:three_prime_UTR
ATGGTTGAAGTTGGTGGCGG+TGG 0.428827 tig0024140:-6904 Msa1414690:CDS
TGAAATTTGCGAAGTGAAAA+CGG 0.429932 tig0024140:+10199 Msa1414690:intergenic
CCAATCGGATATTGAATGCT+TGG 0.430148 tig0024140:+7276 Msa1414690:intergenic
CCTGTATAGGAAAGAGATAA+TGG 0.430433 tig0024140:+6041 Msa1414690:intergenic
CAAGCGCGAGACTAATATTT+GGG 0.431684 tig0024140:-3308 Msa1414690:three_prime_UTR
GAGAAGGTCCAAAAGAATTA+GGG 0.431984 tig0024140:-6929 Msa1414690:CDS
GAGAAGGTCCAAAAGAATTA+GGG 0.431984 tig0024140:-7109 Msa1414690:CDS
CTGAAGGTGGTGGAGGGGAA+AGG 0.432104 tig0024140:-6813 Msa1414690:CDS
ACCGGAGCTGAAGGTGGTGG+AGG 0.432907 tig0024140:-6820 Msa1414690:CDS
TAATAGGTGGTGGTGGGGAA+AGG 0.439707 tig0024140:-6951 Msa1414690:CDS
GGCTTCTACGGGTAATGTTG+TGG 0.441520 tig0024140:-3458 Msa1414690:three_prime_UTR
TAGATGGTGGTGGAGAAATA+AGG 0.445546 tig0024140:-7050 Msa1414690:CDS
TAGTAGGTGGTGGTGGGGAA+AGG 0.449530 tig0024140:-7131 Msa1414690:CDS
GCTTCTACGGGTAATGTTGT+GGG 0.449565 tig0024140:-3457 Msa1414690:three_prime_UTR
GCCACCACCACCTTCAGCTC+CGG 0.450368 tig0024140:+7173 Msa1414690:intergenic
ATTGTTGAAGTTGGTGGCGG+TGG 0.454080 tig0024140:-7084 Msa1414690:CDS
CATACGGGGACTGGCTTCTA+CGG 0.455310 tig0024140:-3470 Msa1414690:three_prime_UTR
GTTGAAGTTGGCGGTGGCGG+TGG 0.456963 tig0024140:-7018 Msa1414690:CDS
GAGTCTGAAAGGAGATTAAA+CGG 0.462557 tig0024140:+10353 Msa1414690:intergenic
GGCACCGGAGCTGAAGGTGG+TGG 0.463445 tig0024140:-6823 Msa1414690:CDS
ATGGATGACGTTGGTGGCGA+TGG 0.464563 tig0024140:-6730 Msa1414690:CDS
GTTGGTGGCGATGGCGGTTG+CGG 0.466718 tig0024140:-6721 Msa1414690:CDS
GTGACGGCCACACCTGATAT+AGG 0.469948 tig0024140:-6314 Msa1414690:three_prime_UTR
CTGAAGGTGGTGGTGGCGAA+AGG 0.471160 tig0024140:-7167 Msa1414690:CDS
AGTCAATAAATAAATTTATC+GGG 0.471486 tig0024140:-3358 Msa1414690:three_prime_UTR
GATGGCGGTTGCGGTGGTGG+TGG 0.474313 tig0024140:-6712 Msa1414690:CDS
ATTAGGGCCATTGTTGAAGT+TGG 0.475450 tig0024140:-7093 Msa1414690:CDS
ACCACCACCTACTACAATAT+CGG 0.476563 tig0024140:+7140 Msa1414690:intergenic
CAGAAGTAATGTAAAAGGTA+AGG 0.479588 tig0024140:-6336 Msa1414690:three_prime_UTR
ACCGGAGCTGAAGGTGGTGG+TGG 0.481766 tig0024140:-7174 Msa1414690:CDS
AGGACCGATGGAGTTGTAGA+TGG 0.484578 tig0024140:-6790 Msa1414690:CDS
ACTATTGCTGCTGTGCTCGT+TGG 0.485368 tig0024140:-3284 Msa1414690:three_prime_UTR
GGTTGCGGTGGTGGTGGCGA+TGG 0.492001 tig0024140:-6706 Msa1414690:CDS
AGACGAATCAACTACCAATC+TGG 0.492221 tig0024140:-6087 Msa1414690:three_prime_UTR
AGGGCCATTGTTGAAGTTGG+TGG 0.492247 tig0024140:-7090 Msa1414690:CDS
TTGTAGATGGTGGTGGCGAA+AGG 0.493499 tig0024140:-6777 Msa1414690:CDS
GATGGTGTAATAGGTGGTGG+TGG 0.494417 tig0024140:-6958 Msa1414690:CDS
ATGGATGGTGTTGAAGTTGG+CGG 0.497191 tig0024140:-6847 Msa1414690:CDS
CCGGAGCTGAAGGTGGTGGA+GGG 0.497991 tig0024140:-6819 Msa1414690:CDS
GTTGAAGTTGGCGGTGGCAC+CGG 0.498250 tig0024140:-6838 Msa1414690:CDS
GTTGAAGTTGGCGGTGGCAC+CGG 0.498250 tig0024140:-7192 Msa1414690:CDS
TCAGCTGAATTGGGATCTGT+TGG 0.499150 tig0024140:-3513 Msa1414690:three_prime_UTR
TCTGAAAATATCACGCCAAA+AGG 0.500549 tig0024140:+3335 Msa1414690:intergenic
TTCAGATTCAGAGGAAGAAG+AGG 0.501652 tig0024140:-9619 Msa1414690:five_prime_UTR
GGCACCGGAGCTGAAGGTGG+TGG 0.501956 tig0024140:-7177 Msa1414690:CDS
GAGTTCGATGCGATGGCGAA+AGG 0.502422 tig0024140:-7227 Msa1414690:CDS
GATATTGTAGTAGGTGGTGG+TGG 0.503534 tig0024140:-7138 Msa1414690:CDS
GGCGGTGGCACCGGAGCTGA+AGG 0.503621 tig0024140:-6829 Msa1414690:CDS
GGCGGTGGCACCGGAGCTGA+AGG 0.503621 tig0024140:-7183 Msa1414690:CDS
ATGGTGTAATAGGTGGTGGT+GGG 0.503761 tig0024140:-6957 Msa1414690:CDS
CTAATCCTATTTGATCTCCT+GGG 0.505911 tig0024140:+7249 Msa1414690:intergenic
GGTGGCAATGAGGCTGTAGA+TGG 0.510887 tig0024140:-6886 Msa1414690:CDS
GGTGGCAATGAGGCTGTAGA+TGG 0.510887 tig0024140:-7066 Msa1414690:CDS
ACTTTAGCACATACGGGGAC+TGG 0.511795 tig0024140:-3479 Msa1414690:three_prime_UTR
GGCAGACCCAACCTGAAAGT+TGG 0.512293 tig0024140:-3381 Msa1414690:three_prime_UTR
GGCACCAGAGCTGAAGGTGG+TGG 0.512569 tig0024140:-6997 Msa1414690:CDS
ACCGCCACCAACTTCAACAA+TGG 0.518041 tig0024140:+7086 Msa1414690:intergenic
AGGATGGATGGTGTTGAAGT+TGG 0.519257 tig0024140:-6850 Msa1414690:CDS
TTCAAATGCAAGAAATGGAC+GGG 0.522978 tig0024140:-5238 Msa1414690:intron
ATGAAGAGTGTTTGAAATGT+GGG 0.523905 tig0024140:-4698 Msa1414690:three_prime_UTR
AGGATGGATGGTGTTGAAGT+TGG 0.523994 tig0024140:-7030 Msa1414690:CDS
AACACTCTTCATATGTAGCA+TGG 0.525664 tig0024140:+4709 Msa1414690:intergenic
GAAGCCACTGAGAACTAGTA+TGG 0.525821 tig0024140:-5508 Msa1414690:three_prime_UTR
ATTAGGGCCATGGTTGAAGT+TGG 0.525869 tig0024140:-6913 Msa1414690:CDS
GGAGGGGAAAGGAGGACCGA+TGG 0.526035 tig0024140:-6802 Msa1414690:CDS
AGGGCCATGGTTGAAGTTGG+TGG 0.526237 tig0024140:-6910 Msa1414690:CDS
ATTGACTCCAACTTTCAGGT+TGG 0.526314 tig0024140:+3374 Msa1414690:intergenic
AATGCGGACTTTAGCACATA+CGG 0.526953 tig0024140:-3486 Msa1414690:three_prime_UTR
ATGGATGGTGTTGAAGTTGG+CGG 0.526957 tig0024140:-7027 Msa1414690:CDS
GGAGATGTACATGGTGGTTG+TGG 0.527779 tig0024140:-6685 Msa1414690:CDS
GATGGAGAGGACGGCGAATG+AGG 0.528403 tig0024140:-4805 Msa1414690:three_prime_UTR
GGCGGTGGCACCAGAGCTGA+AGG 0.528855 tig0024140:-7003 Msa1414690:CDS
AACTCTTCGAATTCGGGAGA+TGG 0.529922 tig0024140:-4823 Msa1414690:three_prime_UTR
ACCGCCACCAACTTCAACCA+TGG 0.531071 tig0024140:+6906 Msa1414690:intergenic
AATCTAGTCCAGAAAGAGAA+AGG 0.531970 tig0024140:-6119 Msa1414690:three_prime_UTR
CCAAATATTAGTCTCGCGCT+TGG 0.532147 tig0024140:+3309 Msa1414690:intergenic
CAAACTGAAGTTGAACCATC+AGG 0.532569 tig0024140:+5423 Msa1414690:intergenic
AACAGGCAAGAAGAGACAGC+CGG 0.534721 tig0024140:-5457 Msa1414690:three_prime_UTR
ACCAGAGCTGAAGGTGGTGG+TGG 0.536501 tig0024140:-6994 Msa1414690:CDS
TTCGAATTCGGGAGATGGAG+AGG 0.538631 tig0024140:-4818 Msa1414690:three_prime_UTR
CTGAAGGTGGTGGTGGCGAA+AGG 0.539321 tig0024140:-6987 Msa1414690:CDS
GTGGTGGTGGGGAAAGGAGA+AGG 0.544468 tig0024140:-6945 Msa1414690:CDS
GTGGTGGTGGGGAAAGGAGA+AGG 0.544468 tig0024140:-7125 Msa1414690:CDS
CTGTTCCCAAAACTTGCTGA+AGG 0.546763 tig0024140:+5475 Msa1414690:intergenic
AGGAGGACCGATATTGTAGT+AGG 0.547868 tig0024140:-7147 Msa1414690:CDS
CGAGGACATCACGGATTTAG+CGG 0.548208 tig0024140:+6272 Msa1414690:intergenic
GCCATTGTTGAAGTTGGTGG+CGG 0.549648 tig0024140:-7087 Msa1414690:CDS
GGTGGCGATGGCGGTTGCGG+TGG 0.549823 tig0024140:-6718 Msa1414690:CDS
ACGGCGAATGAGGAGACTAA+TGG 0.553816 tig0024140:-4795 Msa1414690:three_prime_UTR
GGTGGCACCGGAGCTGAAGG+TGG 0.553954 tig0024140:-6826 Msa1414690:CDS
GGTGGCACCGGAGCTGAAGG+TGG 0.553954 tig0024140:-7180 Msa1414690:CDS
ACCGATATTGTAGTAGGTGG+TGG 0.554808 tig0024140:-7141 Msa1414690:CDS
GGAAGCTATTCGAGAAGAAG+AGG 0.554823 tig0024140:-9676 Msa1414690:intron
CAGAGAAGAGAGCTAAAGAT+CGG 0.559209 tig0024140:+10230 Msa1414690:intergenic
TGGTGGTGGAGAAATAAGGA+TGG 0.560370 tig0024140:-7046 Msa1414690:CDS
CCAAGCATTCAATATCCGAT+TGG 0.562018 tig0024140:-7276 Msa1414690:CDS
ATACGGGGACTGGCTTCTAC+GGG 0.565321 tig0024140:-3469 Msa1414690:three_prime_UTR
TATGAAGAGTGTTTGAAATG+TGG 0.566182 tig0024140:-4699 Msa1414690:three_prime_UTR
CGGAGCTGAAGGTGGTGGAG+GGG 0.566193 tig0024140:-6818 Msa1414690:CDS
GATGGTGTTGAAGTTGGCGG+TGG 0.568175 tig0024140:-7024 Msa1414690:CDS
GATTTAGCGGAGGCTTTGCG+CGG 0.569231 tig0024140:+6285 Msa1414690:intergenic
GGTGGAGAAATGAGGATGGA+TGG 0.569241 tig0024140:-6862 Msa1414690:CDS
ATGACGGATGGTGTTGAAGT+TGG 0.569733 tig0024140:-7204 Msa1414690:CDS
ATGGTGGTGGCGAAAGGAGA+AGG 0.570011 tig0024140:-6771 Msa1414690:CDS
ACGGATGGTGTTGAAGTTGG+CGG 0.570486 tig0024140:-7201 Msa1414690:CDS
ACAGGCAAGAAGAGACAGCC+GGG 0.572058 tig0024140:-5456 Msa1414690:three_prime_UTR
ACAGATGGTGTAATAGGTGG+TGG 0.573984 tig0024140:-6961 Msa1414690:CDS
CCGTGATGTCCTCGTCGCAA+TGG 0.574492 tig0024140:-6263 Msa1414690:three_prime_UTR
ATATTGTAGTAGGTGGTGGT+GGG 0.574784 tig0024140:-7137 Msa1414690:CDS
AGGATTAGAGTTCGATGCGA+TGG 0.575134 tig0024140:-7234 Msa1414690:CDS
ATGCGGACTTTAGCACATAC+GGG 0.575592 tig0024140:-3485 Msa1414690:three_prime_UTR
AAGGTGGTGGTGGCGAAAGG+AGG 0.577210 tig0024140:-7164 Msa1414690:CDS
TGGTGGTGGAGAAATGAGGA+TGG 0.578840 tig0024140:-6866 Msa1414690:CDS
CTAAGACTGTTCAGATTCAG+AGG 0.581573 tig0024140:-9628 Msa1414690:five_prime_UTR
GCCATGGTTGAAGTTGGTGG+CGG 0.582925 tig0024140:-6907 Msa1414690:CDS
AAGGTGGTGGAGGGGAAAGG+AGG 0.586200 tig0024140:-6810 Msa1414690:CDS
ATAACTGAAACTAAATCGAT+CGG 0.586558 tig0024140:+6222 Msa1414690:intergenic
CTAATGGTGAATGTAGTGAA+AGG 0.588155 tig0024140:-4779 Msa1414690:three_prime_UTR
ATTCAAATGCAAGAAATGGA+CGG 0.588460 tig0024140:-5239 Msa1414690:three_prime_UTR
TTGGGTCTGCCGGAACGTGT+CGG 0.588603 tig0024140:+3393 Msa1414690:intergenic
CCACTGAGAACTAGTATGGT+GGG 0.590558 tig0024140:-5504 Msa1414690:three_prime_UTR
CAATGGAGAAAGAGTCTGAA+AGG 0.590894 tig0024140:+10342 Msa1414690:intergenic
AGCAAGCATCAAACTTGTGA+GGG 0.592861 tig0024140:+5270 Msa1414690:intergenic
GTCCAAAAGAATTAGGGCCA+TGG 0.594851 tig0024140:-6923 Msa1414690:CDS
AATCGATCGGAGAGTTCTAC+CGG 0.594959 tig0024140:+6235 Msa1414690:intergenic
AGGGCAATGGATGACGTTGG+TGG 0.595874 tig0024140:-6736 Msa1414690:CDS
ATGCGATGGCGAAAGGATGA+CGG 0.597203 tig0024140:-7220 Msa1414690:CDS
GAACACAGTTGAAACCAGAT+TGG 0.599444 tig0024140:+6073 Msa1414690:intergenic
AAGGTGGTGGTGGCGAAAGG+AGG 0.602934 tig0024140:-6984 Msa1414690:CDS
GGTGGAGAAATAAGGATGGA+TGG 0.604701 tig0024140:-7042 Msa1414690:CDS
GATGGTGTTGAAGTTGGCGG+TGG 0.606604 tig0024140:-6844 Msa1414690:CDS
GCCACTGAGAACTAGTATGG+TGG 0.607785 tig0024140:-5505 Msa1414690:three_prime_UTR
TGGTGTAATAGGTGGTGGTG+GGG 0.608606 tig0024140:-6956 Msa1414690:CDS
ATTTGACCAGATTCGACAAG+TGG 0.608851 tig0024140:-9652 Msa1414690:five_prime_UTR
AGGACAGATGGTGTAATAGG+TGG 0.609112 tig0024140:-6964 Msa1414690:CDS
CCGGGAAAAGAGATGCCTGA+TGG 0.609734 tig0024140:-5438 Msa1414690:three_prime_UTR
ACCACCATCTACAACTCCAT+CGG 0.611181 tig0024140:+6786 Msa1414690:intergenic
AAGCAAGCATCAAACTTGTG+AGG 0.613257 tig0024140:+5269 Msa1414690:intergenic
GATGGAGTTGTAGATGGTGG+TGG 0.615734 tig0024140:-6784 Msa1414690:CDS
TGATGTCCTCGTCGCAATGG+CGG 0.616829 tig0024140:-6260 Msa1414690:three_prime_UTR
CTTCTACGGGTAATGTTGTG+GGG 0.617417 tig0024140:-3456 Msa1414690:three_prime_UTR
ATGTTAATGGAAGTGACTGC+AGG 0.621000 tig0024140:-5365 Msa1414690:three_prime_UTR
GATGGTGTTGAAGTTGGCGG+TGG 0.623232 tig0024140:-7198 Msa1414690:CDS
AGAGTGTTTGAAATGTGGGA+TGG 0.624246 tig0024140:-4694 Msa1414690:three_prime_UTR
GGTGGCGATGGAGATGTACA+TGG 0.626469 tig0024140:-6694 Msa1414690:CDS
GAAGCTATTCGAGAAGAAGA+GGG 0.626506 tig0024140:-9675 Msa1414690:intron
AATGAGGCTGTAGATGGTGG+TGG 0.626981 tig0024140:-6880 Msa1414690:CDS
AATGAGGCTGTAGATGGTGG+TGG 0.626981 tig0024140:-7060 Msa1414690:CDS
AATTCGGGAGATGGAGAGGA+CGG 0.628944 tig0024140:-4814 Msa1414690:three_prime_UTR
GATGACGTTGGTGGCGATGG+CGG 0.631346 tig0024140:-6727 Msa1414690:CDS
GGCAATGAGGCTGTAGATGG+TGG 0.632531 tig0024140:-6883 Msa1414690:CDS
GGCAATGAGGCTGTAGATGG+TGG 0.632531 tig0024140:-7063 Msa1414690:CDS
AATATCCGATTGGAAAACCC+AGG 0.633825 tig0024140:-7266 Msa1414690:CDS
ATGGCAATTGAAGCTCGTTG+AGG 0.635193 tig0024140:-10255 Msa1414690:five_prime_UTR
TAATGTAAAAGGTAAGGTGA+CGG 0.636801 tig0024140:-6330 Msa1414690:three_prime_UTR
TATTGTAGTAGGTGGTGGTG+GGG 0.637343 tig0024140:-7136 Msa1414690:CDS
GGGATCTGTTGGCCAGAATG+CGG 0.637679 tig0024140:-3502 Msa1414690:three_prime_UTR
GCTTGGATATCTATTAGGCA+TGG 0.639413 tig0024140:+7293 Msa1414690:intergenic
GGTGGCGAAAGGAGGACAGA+TGG 0.640376 tig0024140:-6976 Msa1414690:CDS
TAGATGGTGGTGGAGAAATG+AGG 0.642475 tig0024140:-6870 Msa1414690:CDS
CGAGCATCAGATCGGAAGAG+CGG 0.651059 tig0024140:+10281 Msa1414690:intergenic
CCATTGCGACGAGGACATCA+CGG 0.652805 tig0024140:+6263 Msa1414690:intergenic
GGTGGCACCAGAGCTGAAGG+TGG 0.653943 tig0024140:-7000 Msa1414690:CDS
GCGAGATATTAGAAAAGCTG+AGG 0.654014 tig0024140:-6663 Msa1414690:CDS
AGGACCGATATTGTAGTAGG+TGG 0.655795 tig0024140:-7144 Msa1414690:CDS
ATCAGGGCAATGGATGACGT+TGG 0.657602 tig0024140:-6739 Msa1414690:CDS
CCGGAACCGCCATTGCGACG+AGG 0.668033 tig0024140:+6254 Msa1414690:intergenic
GATGTGAAGTGTGCAGACAG+CGG 0.669637 tig0024140:-5320 Msa1414690:three_prime_UTR
AGTTGGTGGCGGTGGCAATG+AGG 0.672386 tig0024140:-6896 Msa1414690:CDS
AGTTGGTGGCGGTGGCAATG+AGG 0.672386 tig0024140:-7076 Msa1414690:CDS
TCAGTTTGAAGCCTTCTGTG+CGG 0.678971 tig0024140:-5408 Msa1414690:three_prime_UTR
GGACATCACGGATTTAGCGG+AGG 0.683899 tig0024140:+6275 Msa1414690:intergenic
ACCGATGGAGTTGTAGATGG+TGG 0.690749 tig0024140:-6787 Msa1414690:CDS
TGTCAGGGAAACATTGCTGA+AGG 0.696155 tig0024140:-3581 Msa1414690:intron
TGCGGACTTTAGCACATACG+GGG 0.719539 tig0024140:-3484 Msa1414690:three_prime_UTR
CCCACCATACTAGTTCTCAG+TGG 0.729319 tig0024140:+5504 Msa1414690:intergenic
GATGGCGAAAGGATGACGGA+TGG 0.756508 tig0024140:-7216 Msa1414690:CDS
GGCGATGGAGATGTACATGG+TGG 0.786952 tig0024140:-6691 Msa1414690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTTTTTTTTTTTT+TGG - tig0024140:8267-8286 Msa1414690:intron 0.0%
!! TGATTTATAAAAAACAATAT+GGG + tig0024140:8588-8607 Msa1414690:intergenic 10.0%
!! ATGATTTATAAAAAACAATA+TGG + tig0024140:8589-8608 Msa1414690:intergenic 10.0%
!! ATCACTATCATTTATTAAAA+TGG + tig0024140:9806-9825 Msa1414690:intergenic 15.0%
!! GAGTCAATAAATAAATTTAT+CGG - tig0024140:10101-10120 Msa1414690:intron 15.0%
!! AGTCAATAAATAAATTTATC+GGG - tig0024140:10102-10121 Msa1414690:intron 15.0%
!! AAAAACTTCAGTTATTTATT+TGG + tig0024140:10260-10279 Msa1414690:intergenic 15.0%
!! AATTGAATATAGAATCCTTA+GGG + tig0024140:3403-3422 Msa1414690:intergenic 20.0%
!! ACTTATTTGAACTTATTTAG+TGG - tig0024140:3568-3587 Msa1414690:three_prime_UTR 20.0%
!!! AAGTTTTTACACAATTAACA+TGG + tig0024140:4190-4209 Msa1414690:intergenic 20.0%
!! AAAAATTCAGAGAATTTCAA+TGG + tig0024140:4689-4708 Msa1414690:intergenic 20.0%
!!! AAGTTTTAACACAATTAACA+TGG + tig0024140:4848-4867 Msa1414690:intergenic 20.0%
!!! CAAAAGTACAAACTTAATAA+TGG + tig0024140:5049-5068 Msa1414690:intergenic 20.0%
!!! CATTATTAAGTTTGTACTTT+TGG - tig0024140:5047-5066 Msa1414690:intron 20.0%
!! AGCAAAAGACAAAAATTTAA+TGG - tig0024140:5191-5210 Msa1414690:intron 20.0%
!!! AAGTTTTAACACAATTAACA+TGG + tig0024140:4848-4867 Msa1414690:intergenic 20.0%
!!! CAAAAGTACAAACTTAATAA+TGG + tig0024140:5049-5068 Msa1414690:intergenic 20.0%
!!! CATTATTAAGTTTGTACTTT+TGG - tig0024140:5047-5066 Msa1414690:intron 20.0%
!! AGCAAAAGACAAAAATTTAA+TGG - tig0024140:5191-5210 Msa1414690:intron 20.0%
!! AGAAAATAGAAGTTTATAGA+GGG + tig0024140:6033-6052 Msa1414690:intergenic 20.0%
!! AAGAAAATAGAAGTTTATAG+AGG + tig0024140:6034-6053 Msa1414690:intergenic 20.0%
!! TCATTAAAATGCACAAATAT+TGG - tig0024140:7632-7651 Msa1414690:intron 20.0%
!! CAATAAAAAAAGGAAAGAAA+GGG + tig0024140:7763-7782 Msa1414690:intergenic 20.0%
!! ACAATAAAAAAAGGAAAGAA+AGG + tig0024140:7764-7783 Msa1414690:intergenic 20.0%
!! GAAAATTCGACAATAAAAAA+AGG + tig0024140:7773-7792 Msa1414690:intergenic 20.0%
!!! TTTCTGTGTAATTTTTGAAA+TGG - tig0024140:7789-7808 Msa1414690:intron 20.0%
!!! TTTCTGTGTAATTTTTGAAA+TGG - tig0024140:7789-7808 Msa1414690:intron 20.0%
!!! ATAAAAGTATCTGAGATTTT+AGG - tig0024140:9222-9241 Msa1414690:intron 20.0%
!!! GCTCTAACTTTTTTATATAT+AGG + tig0024140:9281-9300 Msa1414690:intergenic 20.0%
!! TGTGTTTAGTATAAAAATCT+TGG - tig0024140:9531-9550 Msa1414690:intron 20.0%
!! GTGTTTAGTATAAAAATCTT+GGG - tig0024140:9532-9551 Msa1414690:intron 20.0%
!!! AACTGAAGTTTTTTAAGTAA+CGG - tig0024140:10267-10286 Msa1414690:five_prime_UTR 20.0%
! CAATTGAATATAGAATCCTT+AGG + tig0024140:3404-3423 Msa1414690:intergenic 25.0%
! CATGATACAAAAACAGAATT+TGG + tig0024140:3459-3478 Msa1414690:intergenic 25.0%
! ATCAAATCTAATGTCCTTAT+TGG - tig0024140:3746-3765 Msa1414690:intron 25.0%
! TATTTAGCAATTGATCTGTA+TGG + tig0024140:4232-4251 Msa1414690:intergenic 25.0%
! TACAGATCAATTGCTAAATA+TGG - tig0024140:4232-4251 Msa1414690:intron 25.0%
!! ATACTTCTAAAGAAAACACT+TGG + tig0024140:4275-4294 Msa1414690:intergenic 25.0%
! AAAAACTACCAAAGGAAATA+AGG + tig0024140:4338-4357 Msa1414690:intergenic 25.0%
!!! TATTTCCTTTGGTAGTTTTT+TGG - tig0024140:4338-4357 Msa1414690:intron 25.0%
! TTAAACCAAAAAACTACCAA+AGG + tig0024140:4346-4365 Msa1414690:intergenic 25.0%
! AAATTTGTACTACTTTGCTT+TGG - tig0024140:4538-4557 Msa1414690:intron 25.0%
! ATTATCACTAAGTGAATCAT+TGG + tig0024140:4565-4584 Msa1414690:intergenic 25.0%
! TCAATTTCCTGATTTAATTG+AGG + tig0024140:4660-4679 Msa1414690:intergenic 25.0%
! ATGTTGAAATGCTAGATAAA+AGG + tig0024140:4746-4765 Msa1414690:intergenic 25.0%
! TTAACATGGTTTAATCATTG+AGG + tig0024140:4176-4195 Msa1414690:intergenic 25.0%
! AGTCAATCACACAATTAAAA+TGG + tig0024140:4890-4909 Msa1414690:intergenic 25.0%
!!! TAGTTGTTTTTGTGAATCAA+AGG - tig0024140:5283-5302 Msa1414690:three_prime_UTR 25.0%
! TATTGTTCTTATAGAAAGTG+TGG - tig0024140:5349-5368 Msa1414690:three_prime_UTR 25.0%
! TTAACATGGTTTAATCATTG+AGG + tig0024140:4176-4195 Msa1414690:intergenic 25.0%
! AGTCAATCACACAATTAAAA+TGG + tig0024140:4890-4909 Msa1414690:intergenic 25.0%
!!! TAGTTGTTTTTGTGAATCAA+AGG - tig0024140:5283-5302 Msa1414690:three_prime_UTR 25.0%
! TATTGTTCTTATAGAAAGTG+TGG - tig0024140:5349-5368 Msa1414690:three_prime_UTR 25.0%
!! TCCTTTATTTATTGAATCTG+TGG - tig0024140:5991-6010 Msa1414690:intron 25.0%
! TGAAAATACAATTAGTGTGA+TGG + tig0024140:6983-7002 Msa1414690:intergenic 25.0%
! ATAACTGAAACTAAATCGAT+CGG + tig0024140:7241-7260 Msa1414690:intergenic 25.0%
! GTAACAAAGCACATATAAAA+AGG - tig0024140:7303-7322 Msa1414690:exon 25.0%
!!! GTGTTTTTTAAGTCAATGTT+TGG - tig0024140:7500-7519 Msa1414690:intron 25.0%
! AGAGAGAGAATTAAAAAGAA+GGG + tig0024140:7738-7757 Msa1414690:intergenic 25.0%
! AAGAGAGAGAATTAAAAAGA+AGG + tig0024140:7739-7758 Msa1414690:intergenic 25.0%
!!! AGTTTTTTCTAAATCAGCAA+AGG + tig0024140:8319-8338 Msa1414690:intergenic 25.0%
! TATCATTGAATTTATCAGCA+AGG + tig0024140:8375-8394 Msa1414690:intergenic 25.0%
! ACAAACATAACATGTATAGA+GGG + tig0024140:8538-8557 Msa1414690:intergenic 25.0%
! AACAAACATAACATGTATAG+AGG + tig0024140:8539-8558 Msa1414690:intergenic 25.0%
!! CATGTACTTACATTATTTTC+AGG - tig0024140:8606-8625 Msa1414690:intron 25.0%
! TGAATTCCATTTAGCTATAT+TGG - tig0024140:8709-8728 Msa1414690:intron 25.0%
!!! TTGTTTTGTATGAGCATATA+TGG - tig0024140:8849-8868 Msa1414690:intron 25.0%
! TGTTTCATATGAGTAATTAG+AGG - tig0024140:9500-9519 Msa1414690:intron 25.0%
!! CTGAATGTTGACATTTTTAT+TGG - tig0024140:9856-9875 Msa1414690:intron 25.0%
!!! ACTGAAGTTTTTTAAGTAAC+GGG - tig0024140:10268-10287 Msa1414690:five_prime_UTR 25.0%
!! TTTTCTCAGACAATTATCAA+AGG + tig0024140:10327-10346 Msa1414690:intergenic 25.0%
TGAAATTTGCGAAGTGAAAA+CGG + tig0024140:3264-3283 Msa1414690:intergenic 30.0%
TTTCACTTCGCAAATTTCAT+TGG - tig0024140:3265-3284 Msa1414690:three_prime_UTR 30.0%
!! TATCTGATATTTGCTATCTC+AGG - tig0024140:3522-3541 Msa1414690:three_prime_UTR 30.0%
TAAACTGAAACAATCCAAAC+AGG + tig0024140:3549-3568 Msa1414690:intergenic 30.0%
!! TAGTGGAATAAGTTTTGTAG+TGG - tig0024140:3585-3604 Msa1414690:intron 30.0%
! TGACTTATTTGACTTATCTC+AGG - tig0024140:3614-3633 Msa1414690:intron 30.0%
! GACTTATTTGACTTATCTCA+GGG - tig0024140:3615-3634 Msa1414690:intron 30.0%
AACACCAATCAAAACAAAAC+AGG + tig0024140:3641-3660 Msa1414690:intergenic 30.0%
TTTGTGCTCACTACTAAAAT+GGG + tig0024140:3690-3709 Msa1414690:intergenic 30.0%
! TTTTGTGCTCACTACTAAAA+TGG + tig0024140:3691-3710 Msa1414690:intergenic 30.0%
!! AATGTCCTTATTGGTTGTTT+TGG - tig0024140:3755-3774 Msa1414690:intron 30.0%
TTCATCCAAAACAACCAATA+AGG + tig0024140:3763-3782 Msa1414690:intergenic 30.0%
!!! TATTGGTTGTTTTGGATGAA+TGG - tig0024140:3763-3782 Msa1414690:intron 30.0%
AAACCATATAGACTGATACA+CGG + tig0024140:3993-4012 Msa1414690:intergenic 30.0%
! TATCAGTCTATATGGTTTGT+AGG - tig0024140:3995-4014 Msa1414690:intron 30.0%
TTTCAACATTTAGCATGTAC+TGG - tig0024140:4099-4118 Msa1414690:intron 30.0%
! ATACCATACCTTATTTCCTT+TGG - tig0024140:4327-4346 Msa1414690:intron 30.0%
TGCAACTTTATCAGCTTAAA+AGG + tig0024140:4422-4441 Msa1414690:intergenic 30.0%
! TTTTAAGCTGATAAAGTTGC+AGG - tig0024140:4421-4440 Msa1414690:intron 30.0%
TGATTTAATTGAGGCAATGT+TGG + tig0024140:4651-4670 Msa1414690:intergenic 30.0%
AACATTGCCTCAATTAAATC+AGG - tig0024140:4650-4669 Msa1414690:intron 30.0%
TTTCAACATTTAGCATGTAC+TGG - tig0024140:4099-4118 Msa1414690:intron 30.0%
! TGTGTGATTGACTATGTTTT+TGG - tig0024140:4897-4916 Msa1414690:intron 30.0%
ACAAATGCAATCATTCAACA+AGG + tig0024140:4995-5014 Msa1414690:intergenic 30.0%
! TGTGTGATTGACTATGTTTT+TGG - tig0024140:4897-4916 Msa1414690:intron 30.0%
ACAAATGCAATCATTCAACA+AGG + tig0024140:4995-5014 Msa1414690:intergenic 30.0%
! TATTCTGAGTGTGACATTTT+TGG + tig0024140:5746-5765 Msa1414690:intergenic 30.0%
GCCACAGATTCAATAAATAA+AGG + tig0024140:5995-6014 Msa1414690:intergenic 30.0%
!! AACTTGTTGATGCTTCAATA+TGG + tig0024140:6115-6134 Msa1414690:intergenic 30.0%
TGAATGCTTGGATATCTATT+AGG + tig0024140:6175-6194 Msa1414690:intergenic 30.0%
TCTATTATGCATTTGACACA+CGG - tig0024140:6868-6887 Msa1414690:CDS 30.0%
TCGTTTGTCAGATAAAAATG+TGG - tig0024140:7005-7024 Msa1414690:CDS 30.0%
CAGAAGTAATGTAAAAGGTA+AGG - tig0024140:7124-7143 Msa1414690:CDS 30.0%
TAATGTAAAAGGTAAGGTGA+CGG - tig0024140:7130-7149 Msa1414690:CDS 30.0%
GAAACAATGTTTACCTGTAT+AGG + tig0024140:7435-7454 Msa1414690:intergenic 30.0%
! TTTTGTGTTTAAGCAAAGAC+TGG - tig0024140:7566-7585 Msa1414690:intron 30.0%
GGATATTCAAATGCAAGAAA+TGG - tig0024140:8217-8236 Msa1414690:intron 30.0%
ATTCAAATGCAAGAAATGGA+CGG - tig0024140:8221-8240 Msa1414690:intron 30.0%
!! TATGAAGAGTGTTTGAAATG+TGG - tig0024140:8761-8780 Msa1414690:intron 30.0%
!! ATGAAGAGTGTTTGAAATGT+GGG - tig0024140:8762-8781 Msa1414690:intron 30.0%
! TTATGTCTCAAAACCTTTTG+AGG - tig0024140:8793-8812 Msa1414690:intron 30.0%
! TGTATTAGTTAGTATCGAAC+TGG - tig0024140:8879-8898 Msa1414690:intron 30.0%
AAGAAAGAGAAAAGTGACAA+AGG + tig0024140:8932-8951 Msa1414690:intergenic 30.0%
TAATAAGCTCTTCTGTTGTT+GGG + tig0024140:9412-9431 Msa1414690:intergenic 30.0%
TTAATAAGCTCTTCTGTTGT+TGG + tig0024140:9413-9432 Msa1414690:intergenic 30.0%
TATGAGTAATTAGAGGATGA+AGG - tig0024140:9507-9526 Msa1414690:intron 30.0%
!! AGAAAACTGTTTCTGTTACA+AGG - tig0024140:9648-9667 Msa1414690:five_prime_UTR 30.0%
!! TGATGTTTCGTTTTTATGTC+TGG - tig0024140:9700-9719 Msa1414690:intron 30.0%
!! TTGACATTTTTATTGGTGTC+AGG - tig0024140:9863-9882 Msa1414690:intron 30.0%
!!! TGACATTTTTATTGGTGTCA+GGG - tig0024140:9864-9883 Msa1414690:intron 30.0%
!! ACTTTTAACCGACTTTTTGA+TGG - tig0024140:9905-9924 Msa1414690:intron 30.0%
!! ATTTATTGACTCCAACTTTC+AGG + tig0024140:10093-10112 Msa1414690:intergenic 30.0%
! AATAAATTTATCGGGCCTTT+TGG - tig0024140:10110-10129 Msa1414690:intron 30.0%
!!! AAGACTCGTTGTTTTTCAAT+TGG - tig0024140:10211-10230 Msa1414690:five_prime_UTR 30.0%
!!! AGACTCGTTGTTTTTCAATT+GGG - tig0024140:10212-10231 Msa1414690:five_prime_UTR 30.0%
GAGTCTGAAAGGAGATTAAA+CGG + tig0024140:3110-3129 None:intergenic 35.0%
TTGTGTCTGAAAAATCGCAA+TGG + tig0024140:3138-3157 None:intergenic 35.0%
GAGAAAAAACGAGCTTCAAT+CGG + tig0024140:3296-3315 Msa1414690:intergenic 35.0%
TGCTTCGAAAACTCTTGATT+AGG - tig0024140:3362-3381 Msa1414690:three_prime_UTR 35.0%
GCTTCGAAAACTCTTGATTA+GGG - tig0024140:3363-3382 Msa1414690:three_prime_UTR 35.0%
GTTTATACTCTCAAACCCTA+AGG - tig0024140:3385-3404 Msa1414690:three_prime_UTR 35.0%
ATATAGACTGATACACGGAT+AGG + tig0024140:3988-4007 Msa1414690:intergenic 35.0%
TATCCGTGTATCAGTCTATA+TGG - tig0024140:3987-4006 Msa1414690:intron 35.0%
TATGGTTTAATCAGTCTGCA+GGG + tig0024140:4214-4233 Msa1414690:intergenic 35.0%
CTACCAAAGGAAATAAGGTA+TGG + tig0024140:4333-4352 Msa1414690:intergenic 35.0%
GAAGCATGACATTATTGACA+TGG + tig0024140:4596-4615 Msa1414690:intergenic 35.0%
! GTTTTCATGAGCTATCTTGA+TGG - tig0024140:4927-4946 Msa1414690:intron 35.0%
! TGTGCTACTGCTATATATCT+AGG + tig0024140:5114-5133 Msa1414690:intergenic 35.0%
! TTCTGAGTGTGACACATTTT+TGG + tig0024140:5147-5166 Msa1414690:intergenic 35.0%
! ATTTAATGGACCACACACTA+TGG - tig0024140:5205-5224 Msa1414690:intron 35.0%
ACACTATGGTATGATAGAGT+TGG - tig0024140:5219-5238 Msa1414690:intron 35.0%
! CTTATAGAAAGTGTGGAAAC+TGG - tig0024140:5356-5375 Msa1414690:three_prime_UTR 35.0%
! GTTTTCATGAGCTATCTTGA+TGG - tig0024140:4927-4946 Msa1414690:intron 35.0%
! TGTGCTACTGCTATATATCT+AGG + tig0024140:5114-5133 Msa1414690:intergenic 35.0%
! ATTTAATGGACCACACACTA+TGG - tig0024140:5205-5224 Msa1414690:intron 35.0%
ACACTATGGTATGATAGAGT+TGG - tig0024140:5219-5238 Msa1414690:intron 35.0%
CTAATCCTATTTGATCTCCT+GGG + tig0024140:6214-6233 Msa1414690:intergenic 35.0%
TCTAATCCTATTTGATCTCC+TGG + tig0024140:6215-6234 Msa1414690:intergenic 35.0%
GAGAAGGTCCAAAAGAATTA+GGG - tig0024140:6351-6370 Msa1414690:three_prime_UTR 35.0%
! AACAATGGCCCTAATTCTTT+TGG + tig0024140:6362-6381 Msa1414690:intergenic 35.0%
GAGAAGGTCCAAAAGAATTA+GGG - tig0024140:6351-6370 Msa1414690:three_prime_UTR 35.0%
GAGAAGGTCAAAAAGAATCA+GGG - tig0024140:6705-6724 Msa1414690:CDS 35.0%
AAAAATGTGGAGAAACAAGC+TGG - tig0024140:7018-7037 Msa1414690:CDS 35.0%
AGCTGGAGATATCAAGAAAT+TGG - tig0024140:7035-7054 Msa1414690:CDS 35.0%
GAGTGCAGAAGTAATGTAAA+AGG - tig0024140:7119-7138 Msa1414690:CDS 35.0%
AATCTAGTCCAGAAAGAGAA+AGG - tig0024140:7341-7360 Msa1414690:five_prime_UTR 35.0%
CCTGTATAGGAAAGAGATAA+TGG + tig0024140:7422-7441 Msa1414690:intergenic 35.0%
CCATTATCTCTTTCCTATAC+AGG - tig0024140:7419-7438 Msa1414690:intron 35.0%
TAACAACCCTCTTACTCATT+GGG - tig0024140:7457-7476 Msa1414690:intron 35.0%
AAAGAACCCAATGAGTAAGA+GGG + tig0024140:7466-7485 Msa1414690:intergenic 35.0%
! AAATATTGGCTGTTGAGAGA+AGG - tig0024140:7646-7665 Msa1414690:intron 35.0%
! AATATTGGCTGTTGAGAGAA+GGG - tig0024140:7647-7666 Msa1414690:intron 35.0%
CAAGCTTATGTCTCAAAAGA+TGG + tig0024140:7706-7725 Msa1414690:intergenic 35.0%
CCAAACATGATGAATGATTG+AGG + tig0024140:7857-7876 Msa1414690:intergenic 35.0%
CCTCAATCATTCATCATGTT+TGG - tig0024140:7854-7873 Msa1414690:intron 35.0%
CACTGTATCACTAAAACATG+CGG + tig0024140:7927-7946 Msa1414690:intergenic 35.0%
! AAATTTTCATTCCGCACAGA+AGG + tig0024140:8066-8085 Msa1414690:intergenic 35.0%
! GTGCGGAATGAAAATTTTAG+TGG - tig0024140:8069-8088 Msa1414690:intron 35.0%
TTCAAATGCAAGAAATGGAC+GGG - tig0024140:8222-8241 Msa1414690:intron 35.0%
TTGAAGCAACTCTTCGAATT+CGG - tig0024140:8630-8649 Msa1414690:intron 35.0%
CTAATGGTGAATGTAGTGAA+AGG - tig0024140:8681-8700 Msa1414690:intron 35.0%
TCATCGCCAATATAGCTAAA+TGG + tig0024140:8718-8737 Msa1414690:intergenic 35.0%
AACACTCTTCATATGTAGCA+TGG + tig0024140:8754-8773 Msa1414690:intergenic 35.0%
TGAACAATTCCTTCCTCAAA+AGG + tig0024140:8809-8828 Msa1414690:intergenic 35.0%
!! TTTTGAGGAAGGAATTGTTC+AGG - tig0024140:8808-8827 Msa1414690:intron 35.0%
! ATTAGTTAGTATCGAACTGG+TGG - tig0024140:8882-8901 Msa1414690:intron 35.0%
! TCTTGTTTCCTAAGACTCTT+AGG - tig0024140:9097-9116 Msa1414690:intron 35.0%
!!! TAAGAGGTTTTGGTTTGGTT+TGG - tig0024140:9121-9140 Msa1414690:intron 35.0%
TGCTGTAATGATACTGTACT+TGG - tig0024140:9163-9182 Msa1414690:intron 35.0%
! TCTCAGATACTTTTATCTGC+TGG + tig0024140:9218-9237 Msa1414690:intergenic 35.0%
GGGAGCTTAAATTTGTAAAC+AGG + tig0024140:9383-9402 Msa1414690:intergenic 35.0%
AGCTGAAACGTAGTGAAATA+AGG + tig0024140:9454-9473 Msa1414690:intergenic 35.0%
! AACACTAATAGTGGCATTGA+CGG + tig0024140:9600-9619 Msa1414690:intergenic 35.0%
! TGTGTCGATAACACTAATAG+TGG + tig0024140:9609-9628 Msa1414690:intergenic 35.0%
TCTGTTACAAGGCTTGTATT+TGG - tig0024140:9659-9678 Msa1414690:five_prime_UTR 35.0%
!! ATTGTTTTATCTATCCCCTG+CGG - tig0024140:9752-9771 Msa1414690:intron 35.0%
TACAGTCCTTGATTTCTTGA+AGG - tig0024140:9829-9848 Msa1414690:intron 35.0%
ACAGTCCTTGATTTCTTGAA+GGG - tig0024140:9830-9849 Msa1414690:intron 35.0%
AGTTACCCTTCAAGAAATCA+AGG + tig0024140:9838-9857 Msa1414690:intergenic 35.0%
CTTACAAGCCATCAAAAAGT+CGG + tig0024140:9916-9935 Msa1414690:intergenic 35.0%
TCTGAAAATATCACGCCAAA+AGG + tig0024140:10128-10147 Msa1414690:intergenic 35.0%
!!! GACTCGTTGTTTTTCAATTG+GGG - tig0024140:10213-10232 Msa1414690:five_prime_UTR 35.0%
CAATGGAGAAAGAGTCTGAA+AGG + tig0024140:3121-3140 None:intergenic 40.0%
CAGAGAAGAGAGCTAAAGAT+CGG + tig0024140:3233-3252 Msa1414690:intergenic 40.0%
!! TAGTCGTTTTCTCTCTCACA+AGG - tig0024140:3330-3349 Msa1414690:three_prime_UTR 40.0%
!!! AGGGCCTGTTTTGTTTTGAT+TGG - tig0024140:3634-3653 Msa1414690:intron 40.0%
GAAGCTATTCGAGAAGAAGA+GGG - tig0024140:3785-3804 Msa1414690:intron 40.0%
ATTTGACCAGATTCGACAAG+TGG - tig0024140:3808-3827 Msa1414690:intron 40.0%
CTCTGAATCTGAACAGTCTT+AGG + tig0024140:3834-3853 Msa1414690:intergenic 40.0%
CTAAGACTGTTCAGATTCAG+AGG - tig0024140:3832-3851 Msa1414690:intron 40.0%
TTCAGATTCAGAGGAAGAAG+AGG - tig0024140:3841-3860 Msa1414690:intron 40.0%
!!! AGAAGAGGATTTTGAAGCAG+AGG - tig0024140:3856-3875 Msa1414690:intron 40.0%
!!! GATTTTGAAGCAGAGGTTGA+AGG - tig0024140:3863-3882 Msa1414690:intron 40.0%
! CCAAATTTCTAGACAGCTCA+AGG + tig0024140:3926-3945 Msa1414690:intergenic 40.0%
CCTTGAGCTGTCTAGAAATT+TGG - tig0024140:3923-3942 Msa1414690:intron 40.0%
GCTGTCTAGAAATTTGGATG+TGG - tig0024140:3929-3948 Msa1414690:intron 40.0%
GTATGGTTTAATCAGTCTGC+AGG + tig0024140:4215-4234 Msa1414690:intergenic 40.0%
AATGGTTTGATCAGTCTGCA+GGG + tig0024140:4872-4891 Msa1414690:intergenic 40.0%
AAATGGTTTGATCAGTCTGC+AGG + tig0024140:4873-4892 Msa1414690:intergenic 40.0%
! TGAGCTATCTTGATGGATGT+AGG - tig0024140:4934-4953 Msa1414690:intron 40.0%
! GAGCTATCTTGATGGATGTA+GGG - tig0024140:4935-4954 Msa1414690:intron 40.0%
! ATCTTGATGGATGTAGGGAA+AGG - tig0024140:4940-4959 Msa1414690:intron 40.0%
CTCTATCATACCATAGTGTG+TGG + tig0024140:5218-5237 Msa1414690:intergenic 40.0%
!! TAGAGTTGGTGTGTGAATGT+AGG - tig0024140:5233-5252 Msa1414690:intron 40.0%
AATGGTTTGATCAGTCTGCA+GGG + tig0024140:4872-4891 Msa1414690:intergenic 40.0%
AAATGGTTTGATCAGTCTGC+AGG + tig0024140:4873-4892 Msa1414690:intergenic 40.0%
! TGAGCTATCTTGATGGATGT+AGG - tig0024140:4934-4953 Msa1414690:intron 40.0%
! GAGCTATCTTGATGGATGTA+GGG - tig0024140:4935-4954 Msa1414690:intron 40.0%
! ATCTTGATGGATGTAGGGAA+AGG - tig0024140:4940-4959 Msa1414690:intron 40.0%
CTCTATCATACCATAGTGTG+TGG + tig0024140:5218-5237 Msa1414690:intergenic 40.0%
!! TAGAGTTGGTGTGTGAATGT+AGG - tig0024140:5233-5252 Msa1414690:intron 40.0%
! AACACTACCTTTTCAGCTGA+AGG - tig0024140:6079-6098 Msa1414690:three_prime_UTR 40.0%
ACTTGAACCTTCAGCTGAAA+AGG + tig0024140:6089-6108 Msa1414690:intergenic 40.0%
ATGGTCTCAGCGAAAAAGAA+AGG + tig0024140:6151-6170 Msa1414690:intergenic 40.0%
GCTTGGATATCTATTAGGCA+TGG + tig0024140:6170-6189 Msa1414690:intergenic 40.0%
CCAATCGGATATTGAATGCT+TGG + tig0024140:6187-6206 Msa1414690:intergenic 40.0%
CCAAGCATTCAATATCCGAT+TGG - tig0024140:6184-6203 Msa1414690:three_prime_UTR 40.0%
AATATCCGATTGGAAAACCC+AGG - tig0024140:6194-6213 Msa1414690:three_prime_UTR 40.0%
GAAAACCCAGGAGATCAAAT+AGG - tig0024140:6206-6225 Msa1414690:three_prime_UTR 40.0%
ACCACCACCTACTACAATAT+CGG + tig0024140:6323-6342 Msa1414690:intergenic 40.0%
! ATATTGTAGTAGGTGGTGGT+GGG - tig0024140:6323-6342 Msa1414690:three_prime_UTR 40.0%
GGAGAAGGTCCAAAAGAATT+AGG - tig0024140:6350-6369 Msa1414690:three_prime_UTR 40.0%
ATTAGGGCCATTGTTGAAGT+TGG - tig0024140:6367-6386 Msa1414690:exon 40.0%
!! TAGATGGTGGTGGAGAAATA+AGG - tig0024140:6410-6429 Msa1414690:CDS 40.0%
GGAGAAGGTCCAAAAGAATT+AGG - tig0024140:6350-6369 Msa1414690:three_prime_UTR 40.0%
! AACCATGGCCCTAATTCTTT+TGG + tig0024140:6542-6561 Msa1414690:intergenic 40.0%
GGAGAAGGTCAAAAAGAATC+AGG - tig0024140:6704-6723 Msa1414690:CDS 40.0%
GTCAAAAAGAATCAGGGCAA+TGG - tig0024140:6711-6730 Msa1414690:CDS 40.0%
GCGAGATATTAGAAAAGCTG+AGG - tig0024140:6797-6816 Msa1414690:CDS 40.0%
TGAAATGGAGCTATGAAGCA+CGG + tig0024140:6957-6976 Msa1414690:intergenic 40.0%
TGCTTCATAGCTCCATTTCA+AGG - tig0024140:6957-6976 Msa1414690:CDS 40.0%
! TTAGTGTGATGGCCTTGAAA+TGG + tig0024140:6972-6991 Msa1414690:intergenic 40.0%
! GCTTTTACCTATATCAGGTG+TGG + tig0024140:7156-7175 Msa1414690:intergenic 40.0%
AGACGAATCAACTACCAATC+TGG - tig0024140:7373-7392 Msa1414690:intron 40.0%
GAACACAGTTGAAACCAGAT+TGG + tig0024140:7390-7409 Msa1414690:intergenic 40.0%
CTAACAACCCTCTTACTCAT+TGG - tig0024140:7456-7475 Msa1414690:intron 40.0%
CAAAGAACCCAATGAGTAAG+AGG + tig0024140:7467-7486 Msa1414690:intergenic 40.0%
GAGTACTAATCATGCTCTCT+AGG + tig0024140:7599-7618 Msa1414690:intergenic 40.0%
CAAACTGAAGTTGAACCATC+AGG + tig0024140:8040-8059 Msa1414690:intergenic 40.0%
! ATCCGCTCCAAAGTTTTTCA+AGG + tig0024140:8123-8142 Msa1414690:intergenic 40.0%
AGCAAGCATCAAACTTGTGA+GGG + tig0024140:8193-8212 Msa1414690:intergenic 40.0%
AAGCAAGCATCAAACTTGTG+AGG + tig0024140:8194-8213 Msa1414690:intergenic 40.0%
CAAGTTTGATGCTTGCTTCA+AGG - tig0024140:8196-8215 Msa1414690:intron 40.0%
TTACGTGCATTCAACTTACG+TGG + tig0024140:8399-8418 Msa1414690:intergenic 40.0%
! AATGCACGTAACTTGCATGT+TGG - tig0024140:8408-8427 Msa1414690:intron 40.0%
TGAAGCAACTCTTCGAATTC+GGG - tig0024140:8631-8650 Msa1414690:intron 40.0%
! AGAGTGTTTGAAATGTGGGA+TGG - tig0024140:8766-8785 Msa1414690:intron 40.0%
!! GTCTCAAAACCTTTTGAGGA+AGG - tig0024140:8797-8816 Msa1414690:intron 40.0%
CCAAGCATGATGAATGATTG+AGG + tig0024140:9057-9076 Msa1414690:intergenic 40.0%
CCTCAATCATTCATCATGCT+TGG - tig0024140:9054-9073 Msa1414690:intron 40.0%
! ACTCTTAGGCTAAGAGGTTT+TGG - tig0024140:9111-9130 Msa1414690:intron 40.0%
!!! TAGGCTAAGAGGTTTTGGTT+TGG - tig0024140:9116-9135 Msa1414690:intron 40.0%
AAAGTTAGAGCTAGAGCTAC+TGG - tig0024140:9290-9309 Msa1414690:intron 40.0%
AAGTTAGAGCTAGAGCTACT+GGG - tig0024140:9291-9310 Msa1414690:intron 40.0%
GAGAACCCAACAACCTAATT+GGG + tig0024140:9334-9353 Msa1414690:intergenic 40.0%
TGAGAACCCAACAACCTAAT+TGG + tig0024140:9335-9354 Msa1414690:intergenic 40.0%
TTGTTGGGTTCTCATCATCT+CGG - tig0024140:9341-9360 Msa1414690:intron 40.0%
AGCTTATTAAAGCGACTGCA+GGG - tig0024140:9423-9442 Msa1414690:intron 40.0%
!! TTTTGATGGCTTGTAAGACC+TGG - tig0024140:9919-9938 Msa1414690:intron 40.0%
AATGCGGACTTTAGCACATA+CGG - tig0024140:9974-9993 Msa1414690:intron 40.0%
GCATGACGACTTGAATTTCA+TGG - tig0024140:10026-10045 Msa1414690:intron 40.0%
!! TTGACTCCAACTTTCAGGTT+GGG + tig0024140:10088-10107 Msa1414690:intergenic 40.0%
! ATTGACTCCAACTTTCAGGT+TGG + tig0024140:10089-10108 Msa1414690:intergenic 40.0%
CAAGCGCGAGACTAATATTT+GGG - tig0024140:10152-10171 Msa1414690:five_prime_UTR 40.0%
GTGAATAAACACGCTCTTTG+TGG - tig0024140:10349-10368 Msa1414690:five_prime_UTR 40.0%
GAAGAGCGGAAAAATCGCAA+TGG + tig0024140:3168-3187 None:intergenic 45.0%
TCCGATCTGATGCTCGAAAA+TGG - tig0024140:3186-3205 Msa1414690:three_prime_UTR 45.0%
!! GCCATTTTCGAGCATCAGAT+CGG + tig0024140:3190-3209 Msa1414690:intergenic 45.0%
ATGGCAATTGAAGCTCGTTG+AGG - tig0024140:3205-3224 Msa1414690:three_prime_UTR 45.0%
TTGCTATCTCAGGTCCTGTT+TGG - tig0024140:3532-3551 Msa1414690:three_prime_UTR 45.0%
GGAAGCTATTCGAGAAGAAG+AGG - tig0024140:3784-3803 Msa1414690:intron 45.0%
! ATGTAGGGAAAGGCATACAG+TGG - tig0024140:4950-4969 Msa1414690:intron 45.0%
! ATGTAGGGAAAGGCATACAG+TGG - tig0024140:4950-4969 Msa1414690:intron 45.0%
TTATAGAGGGAATCACGCGT+GGG + tig0024140:6020-6039 Msa1414690:intergenic 45.0%
TTTATAGAGGGAATCACGCG+TGG + tig0024140:6021-6040 Msa1414690:intergenic 45.0%
! GATCTCCTGGGTTTTCCAAT+CGG + tig0024140:6202-6221 Msa1414690:intergenic 45.0%
AGGATTAGAGTTCGATGCGA+TGG - tig0024140:6226-6245 Msa1414690:three_prime_UTR 45.0%
!! ATGACGGATGGTGTTGAAGT+TGG - tig0024140:6256-6275 Msa1414690:three_prime_UTR 45.0%
AGGAGGACCGATATTGTAGT+AGG - tig0024140:6313-6332 Msa1414690:three_prime_UTR 45.0%
AGGACCGATATTGTAGTAGG+TGG - tig0024140:6316-6335 Msa1414690:three_prime_UTR 45.0%
ACCGATATTGTAGTAGGTGG+TGG - tig0024140:6319-6338 Msa1414690:three_prime_UTR 45.0%
! GATATTGTAGTAGGTGGTGG+TGG - tig0024140:6322-6341 Msa1414690:three_prime_UTR 45.0%
! TATTGTAGTAGGTGGTGGTG+GGG - tig0024140:6324-6343 Msa1414690:three_prime_UTR 45.0%
!! TGGTGGTGGAGAAATAAGGA+TGG - tig0024140:6414-6433 Msa1414690:CDS 45.0%
GGTGGAGAAATAAGGATGGA+TGG - tig0024140:6418-6437 Msa1414690:CDS 45.0%
! AGGATGGATGGTGTTGAAGT+TGG - tig0024140:6430-6449 Msa1414690:CDS 45.0%
! ATGGATGGTGTTGAAGTTGG+CGG - tig0024140:6433-6452 Msa1414690:CDS 45.0%
AGGAGGACAGATGGTGTAAT+AGG - tig0024140:6493-6512 Msa1414690:intron 45.0%
AGGACAGATGGTGTAATAGG+TGG - tig0024140:6496-6515 Msa1414690:intron 45.0%
ACAGATGGTGTAATAGGTGG+TGG - tig0024140:6499-6518 Msa1414690:intron 45.0%
! ATGGTGTAATAGGTGGTGGT+GGG - tig0024140:6503-6522 Msa1414690:intron 45.0%
GTCCAAAAGAATTAGGGCCA+TGG - tig0024140:6357-6376 Msa1414690:three_prime_UTR 45.0%
ATTAGGGCCATGGTTGAAGT+TGG - tig0024140:6547-6566 Msa1414690:intron 45.0%
!! TAGATGGTGGTGGAGAAATG+AGG - tig0024140:6590-6609 Msa1414690:intron 45.0%
! AGGATGGATGGTGTTGAAGT+TGG - tig0024140:6430-6449 Msa1414690:CDS 45.0%
! ATGGATGGTGTTGAAGTTGG+CGG - tig0024140:6433-6452 Msa1414690:CDS 45.0%
ACCACCATCTACAACTCCAT+CGG + tig0024140:6677-6696 Msa1414690:intergenic 45.0%
ATGCATTTGACACACGGACA+CGG - tig0024140:6874-6893 Msa1414690:CDS 45.0%
TGTGTCTGACACGACACTTA+TGG + tig0024140:6907-6926 Msa1414690:intergenic 45.0%
AATCGATCGGAGAGTTCTAC+CGG + tig0024140:7228-7247 Msa1414690:intergenic 45.0%
GATCTGCACCTTTCTCTTTC+TGG + tig0024140:7352-7371 Msa1414690:intergenic 45.0%
GAAGCCACTGAGAACTAGTA+TGG - tig0024140:7952-7971 Msa1414690:intron 45.0%
CCACTGAGAACTAGTATGGT+GGG - tig0024140:7956-7975 Msa1414690:intron 45.0%
! AGCTTGCCTTCAGCAAGTTT+TGG - tig0024140:7979-7998 Msa1414690:intron 45.0%
! GCTTGCCTTCAGCAAGTTTT+GGG - tig0024140:7980-7999 Msa1414690:intron 45.0%
!! CTGTTCCCAAAACTTGCTGA+AGG + tig0024140:7988-8007 Msa1414690:intergenic 45.0%
!!! CTTCAGCAAGTTTTGGGAAC+AGG - tig0024140:7986-8005 Msa1414690:intron 45.0%
! TCAGTTTGAAGCCTTCTGTG+CGG - tig0024140:8052-8071 Msa1414690:intron 45.0%
! CGCCTTGAAAAACTTTGGAG+CGG - tig0024140:8118-8137 Msa1414690:intron 45.0%
AACTCTTCGAATTCGGGAGA+TGG - tig0024140:8637-8656 Msa1414690:intron 45.0%
CCTCTTAGCCTAAGAGTCTT+AGG + tig0024140:9108-9127 Msa1414690:intergenic 45.0%
CCTAAGACTCTTAGGCTAAG+AGG - tig0024140:9105-9124 Msa1414690:intron 45.0%
AACAACCTAATTGGGCCAGT+CGG + tig0024140:9326-9345 Msa1414690:intergenic 45.0%
! ACTGGCCCAATTAGGTTGTT+GGG - tig0024140:9326-9345 Msa1414690:intron 45.0%
AGCTCTTCTGTTGTTGGGTT+GGG + tig0024140:9407-9426 Msa1414690:intergenic 45.0%
AAGCTCTTCTGTTGTTGGGT+TGG + tig0024140:9408-9427 Msa1414690:intergenic 45.0%
GAGCTTATTAAAGCGACTGC+AGG - tig0024140:9422-9441 Msa1414690:intron 45.0%
AGAAGACAATGCAAACCGCA+GGG + tig0024140:9770-9789 Msa1414690:intergenic 45.0%
TGTCAGGGAAACATTGCTGA+AGG - tig0024140:9879-9898 Msa1414690:intron 45.0%
CTGGATTGCTCAGCTGAATT+GGG - tig0024140:9938-9957 Msa1414690:intron 45.0%
TCAGCTGAATTGGGATCTGT+TGG - tig0024140:9947-9966 Msa1414690:intron 45.0%
ATGTGCTAAAGTCCGCATTC+TGG + tig0024140:9973-9992 Msa1414690:intergenic 45.0%
ATGCGGACTTTAGCACATAC+GGG - tig0024140:9975-9994 Msa1414690:intron 45.0%
GCTTCTACGGGTAATGTTGT+GGG - tig0024140:10003-10022 Msa1414690:intron 45.0%
CTTCTACGGGTAATGTTGTG+GGG - tig0024140:10004-10023 Msa1414690:intron 45.0%
! CCAAATATTAGTCTCGCGCT+TGG + tig0024140:10154-10173 Msa1414690:intergenic 45.0%
CCAAGCGCGAGACTAATATT+TGG - tig0024140:10151-10170 Msa1414690:five_prime_UTR 45.0%
CTTAGGCCACTTGTCGAATC+TGG + tig0024140:3817-3836 Msa1414690:intergenic 50.0%
ATGCGATGGCGAAAGGATGA+CGG - tig0024140:6240-6259 Msa1414690:three_prime_UTR 50.0%
! ACGGATGGTGTTGAAGTTGG+CGG - tig0024140:6259-6278 Msa1414690:three_prime_UTR 50.0%
AGGGCCATTGTTGAAGTTGG+TGG - tig0024140:6370-6389 Msa1414690:exon 50.0%
!! GCCATTGTTGAAGTTGGTGG+CGG - tig0024140:6373-6392 Msa1414690:exon 50.0%
ACCGCCACCAACTTCAACAA+TGG + tig0024140:6377-6396 Msa1414690:intergenic 50.0%
!! ATTGTTGAAGTTGGTGGCGG+TGG - tig0024140:6376-6395 Msa1414690:exon 50.0%
! AATGAGGCTGTAGATGGTGG+TGG - tig0024140:6400-6419 Msa1414690:CDS 50.0%
! GATGGTGTAATAGGTGGTGG+TGG - tig0024140:6502-6521 Msa1414690:intron 50.0%
! TGGTGTAATAGGTGGTGGTG+GGG - tig0024140:6504-6523 Msa1414690:intron 50.0%
!! TAATAGGTGGTGGTGGGGAA+AGG - tig0024140:6509-6528 Msa1414690:intron 50.0%
! AATGAGGCTGTAGATGGTGG+TGG - tig0024140:6400-6419 Msa1414690:CDS 50.0%
!! TGGTGGTGGAGAAATGAGGA+TGG - tig0024140:6594-6613 Msa1414690:intron 50.0%
GGTGGAGAAATGAGGATGGA+TGG - tig0024140:6598-6617 Msa1414690:intron 50.0%
AGGACCGATGGAGTTGTAGA+TGG - tig0024140:6670-6689 Msa1414690:CDS 50.0%
ACCGATGGAGTTGTAGATGG+TGG - tig0024140:6673-6692 Msa1414690:CDS 50.0%
! GATGGAGTTGTAGATGGTGG+TGG - tig0024140:6676-6695 Msa1414690:CDS 50.0%
!! TTGTAGATGGTGGTGGCGAA+AGG - tig0024140:6683-6702 Msa1414690:CDS 50.0%
ATCAGGGCAATGGATGACGT+TGG - tig0024140:6721-6740 Msa1414690:CDS 50.0%
GGAGATGTACATGGTGGTTG+TGG - tig0024140:6775-6794 Msa1414690:CDS 50.0%
! AAGTGTCGTGTCAGACACAC+CGG - tig0024140:6908-6927 Msa1414690:CDS 50.0%
TATGAAGCACGGACACTCCT+CGG + tig0024140:6946-6965 Msa1414690:intergenic 50.0%
! GCGCGGCTTTTACCTATATC+AGG + tig0024140:7161-7180 Msa1414690:intergenic 50.0%
CGAGGACATCACGGATTTAG+CGG + tig0024140:7191-7210 Msa1414690:intergenic 50.0%
GCCACTGAGAACTAGTATGG+TGG - tig0024140:7955-7974 Msa1414690:intron 50.0%
! CCCACCATACTAGTTCTCAG+TGG + tig0024140:7959-7978 Msa1414690:intergenic 50.0%
AACAGGCAAGAAGAGACAGC+CGG - tig0024140:8003-8022 Msa1414690:intron 50.0%
! CCATCAGGCATCTCTTTTCC+CGG + tig0024140:8025-8044 Msa1414690:intergenic 50.0%
GCAGGCGCCTTGAAAAACTT+TGG - tig0024140:8113-8132 Msa1414690:intron 50.0%
GATGTGAAGTGTGCAGACAG+CGG - tig0024140:8140-8159 Msa1414690:intron 50.0%
TTCGAATTCGGGAGATGGAG+AGG - tig0024140:8642-8661 Msa1414690:intron 50.0%
AATTCGGGAGATGGAGAGGA+CGG - tig0024140:8646-8665 Msa1414690:intron 50.0%
ACGGCGAATGAGGAGACTAA+TGG - tig0024140:8665-8684 Msa1414690:intron 50.0%
TGAGAGAGAGAGAGAGAGAG+AGG - tig0024140:9005-9024 Msa1414690:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - tig0024140:9006-9025 Msa1414690:intron 50.0%
ACTGGGAAAGTTGTTCCGAC+TGG - tig0024140:9308-9327 Msa1414690:intron 50.0%
! TTGTTCCGACTGGCCCAATT+AGG - tig0024140:9318-9337 Msa1414690:intron 50.0%
! GACTGGCCCAATTAGGTTGT+TGG - tig0024140:9325-9344 Msa1414690:intron 50.0%
!! CTTCTGTTGTTGGGTTGGGA+GGG + tig0024140:9403-9422 Msa1414690:intergenic 50.0%
!! TCTTCTGTTGTTGGGTTGGG+AGG + tig0024140:9404-9423 Msa1414690:intergenic 50.0%
GAAGACAATGCAAACCGCAG+GGG + tig0024140:9769-9788 Msa1414690:intergenic 50.0%
GAGAAGACAATGCAAACCGC+AGG + tig0024140:9771-9790 Msa1414690:intergenic 50.0%
CCAATTCAGCTGAGCAATCC+AGG + tig0024140:9940-9959 Msa1414690:intergenic 50.0%
CCTGGATTGCTCAGCTGAAT+TGG - tig0024140:9937-9956 Msa1414690:intron 50.0%
TGCGGACTTTAGCACATACG+GGG - tig0024140:9976-9995 Msa1414690:intron 50.0%
ACTTTAGCACATACGGGGAC+TGG - tig0024140:9981-10000 Msa1414690:intron 50.0%
GGCTTCTACGGGTAATGTTG+TGG - tig0024140:10002-10021 Msa1414690:intron 50.0%
ATCTAGACTCCGACACGTTC+CGG - tig0024140:10058-10077 Msa1414690:intron 50.0%
!! AACTTTCAGGTTGGGTCTGC+CGG + tig0024140:10080-10099 Msa1414690:intergenic 50.0%
ACTATTGCTGCTGTGCTCGT+TGG - tig0024140:10176-10195 Msa1414690:five_prime_UTR 50.0%
CGAGCATCAGATCGGAAGAG+CGG + tig0024140:3182-3201 None:intergenic 55.0%
GAGTTCGATGCGATGGCGAA+AGG - tig0024140:6233-6252 Msa1414690:three_prime_UTR 55.0%
!! GATGGCGAAAGGATGACGGA+TGG - tig0024140:6244-6263 Msa1414690:three_prime_UTR 55.0%
! GATGGTGTTGAAGTTGGCGG+TGG - tig0024140:6262-6281 Msa1414690:three_prime_UTR 55.0%
!! TAGTAGGTGGTGGTGGGGAA+AGG - tig0024140:6329-6348 Msa1414690:three_prime_UTR 55.0%
GGTGGCAATGAGGCTGTAGA+TGG - tig0024140:6394-6413 Msa1414690:CDS 55.0%
GGCAATGAGGCTGTAGATGG+TGG - tig0024140:6397-6416 Msa1414690:CDS 55.0%
! GATGGTGTTGAAGTTGGCGG+TGG - tig0024140:6262-6281 Msa1414690:three_prime_UTR 55.0%
AGGGCCATGGTTGAAGTTGG+TGG - tig0024140:6550-6569 Msa1414690:intron 55.0%
!! GCCATGGTTGAAGTTGGTGG+CGG - tig0024140:6553-6572 Msa1414690:intron 55.0%
ACCGCCACCAACTTCAACCA+TGG + tig0024140:6557-6576 Msa1414690:intergenic 55.0%
!! ATGGTTGAAGTTGGTGGCGG+TGG - tig0024140:6556-6575 Msa1414690:intron 55.0%
GGTGGCAATGAGGCTGTAGA+TGG - tig0024140:6394-6413 Msa1414690:CDS 55.0%
GGCAATGAGGCTGTAGATGG+TGG - tig0024140:6397-6416 Msa1414690:CDS 55.0%
! GATGGTGTTGAAGTTGGCGG+TGG - tig0024140:6262-6281 Msa1414690:three_prime_UTR 55.0%
!! ATGGTGGTGGCGAAAGGAGA+AGG - tig0024140:6689-6708 Msa1414690:CDS 55.0%
AGGGCAATGGATGACGTTGG+TGG - tig0024140:6724-6743 Msa1414690:CDS 55.0%
!! ATGGATGACGTTGGTGGCGA+TGG - tig0024140:6730-6749 Msa1414690:CDS 55.0%
GGTGGCGATGGAGATGTACA+TGG - tig0024140:6766-6785 Msa1414690:CDS 55.0%
GGCGATGGAGATGTACATGG+TGG - tig0024140:6769-6788 Msa1414690:CDS 55.0%
AGTGTCGTGTCAGACACACC+GGG - tig0024140:6909-6928 Msa1414690:CDS 55.0%
GTGACGGCCACACCTGATAT+AGG - tig0024140:7146-7165 Msa1414690:CDS 55.0%
GATTTAGCGGAGGCTTTGCG+CGG + tig0024140:7178-7197 Msa1414690:intergenic 55.0%
GGACATCACGGATTTAGCGG+AGG + tig0024140:7188-7207 Msa1414690:intergenic 55.0%
CCATTGCGACGAGGACATCA+CGG + tig0024140:7200-7219 Msa1414690:intergenic 55.0%
TGATGTCCTCGTCGCAATGG+CGG - tig0024140:7200-7219 Msa1414690:CDS 55.0%
GGCTGTTGAGAGAAGGGAGA+AGG - tig0024140:7653-7672 Msa1414690:intron 55.0%
ACAGGCAAGAAGAGACAGCC+GGG - tig0024140:8004-8023 Msa1414690:intron 55.0%
CCGGGAAAAGAGATGCCTGA+TGG - tig0024140:8022-8041 Msa1414690:intron 55.0%
AGAGAGAGAGAGAGAGAGGG+AGG - tig0024140:9009-9028 Msa1414690:intron 55.0%
GAGAGAGAGAGAGAGAGGGA+GGG - tig0024140:9010-9029 Msa1414690:intron 55.0%
GGGTTCTCATCATCTCGGTG+TGG - tig0024140:9346-9365 Msa1414690:intron 55.0%
GGGATCTGTTGGCCAGAATG+CGG - tig0024140:9958-9977 Msa1414690:intron 55.0%
!! CATACGGGGACTGGCTTCTA+CGG - tig0024140:9990-10009 Msa1414690:intron 55.0%
!! ATACGGGGACTGGCTTCTAC+GGG - tig0024140:9991-10010 Msa1414690:intron 55.0%
GGCAGACCCAACCTGAAAGT+TGG - tig0024140:10079-10098 Msa1414690:intron 55.0%
!!! GCTGTGCTCGTTGGCTCTTT+TGG - tig0024140:10185-10204 Msa1414690:five_prime_UTR 55.0%
GTTGAAGTTGGCGGTGGCAC+CGG - tig0024140:6268-6287 Msa1414690:three_prime_UTR 60.0%
!! CTGAAGGTGGTGGTGGCGAA+AGG - tig0024140:6293-6312 Msa1414690:three_prime_UTR 60.0%
!! AAGGTGGTGGTGGCGAAAGG+AGG - tig0024140:6296-6315 Msa1414690:three_prime_UTR 60.0%
!! GTGGTGGTGGGGAAAGGAGA+AGG - tig0024140:6335-6354 Msa1414690:three_prime_UTR 60.0%
!! AGTTGGTGGCGGTGGCAATG+AGG - tig0024140:6384-6403 Msa1414690:CDS 60.0%
! GGTGTTGAAGTTGGCGGTGG+CGG - tig0024140:6265-6284 Msa1414690:three_prime_UTR 60.0%
! ACCAGAGCTGAAGGTGGTGG+TGG - tig0024140:6466-6485 Msa1414690:intron 60.0%
!! CTGAAGGTGGTGGTGGCGAA+AGG - tig0024140:6293-6312 Msa1414690:three_prime_UTR 60.0%
!! AAGGTGGTGGTGGCGAAAGG+AGG - tig0024140:6296-6315 Msa1414690:three_prime_UTR 60.0%
GGTGGCGAAAGGAGGACAGA+TGG - tig0024140:6484-6503 Msa1414690:intron 60.0%
!! GTGGTGGTGGGGAAAGGAGA+AGG - tig0024140:6335-6354 Msa1414690:three_prime_UTR 60.0%
!! AGTTGGTGGCGGTGGCAATG+AGG - tig0024140:6384-6403 Msa1414690:CDS 60.0%
GTTGAAGTTGGCGGTGGCAC+CGG - tig0024140:6268-6287 Msa1414690:three_prime_UTR 60.0%
!! CTGAAGGTGGTGGAGGGGAA+AGG - tig0024140:6647-6666 Msa1414690:CDS 60.0%
!! AAGGTGGTGGAGGGGAAAGG+AGG - tig0024140:6650-6669 Msa1414690:CDS 60.0%
!! GATGACGTTGGTGGCGATGG+CGG - tig0024140:6733-6752 Msa1414690:CDS 60.0%
! ACGGACACTCCTCGGATTGG+GGG + tig0024140:6938-6957 Msa1414690:intergenic 60.0%
CACGGACACTCCTCGGATTG+GGG + tig0024140:6939-6958 Msa1414690:intergenic 60.0%
GCACGGACACTCCTCGGATT+GGG + tig0024140:6940-6959 Msa1414690:intergenic 60.0%
AGCACGGACACTCCTCGGAT+TGG + tig0024140:6941-6960 Msa1414690:intergenic 60.0%
CCGTGATGTCCTCGTCGCAA+TGG - tig0024140:7197-7216 Msa1414690:CDS 60.0%
GATGGAGAGGACGGCGAATG+AGG - tig0024140:8655-8674 Msa1414690:intron 60.0%
AGAGAGAGAGAGAGGGAGGG+AGG - tig0024140:9013-9032 Msa1414690:intron 60.0%
GAGAGAGAGAGAGGGAGGGA+GGG - tig0024140:9014-9033 Msa1414690:intron 60.0%
TTGGGTCTGCCGGAACGTGT+CGG + tig0024140:10070-10089 Msa1414690:intergenic 60.0%
! ACCGGAGCTGAAGGTGGTGG+TGG - tig0024140:6286-6305 Msa1414690:three_prime_UTR 65.0%
GCCACCACCACCTTCAGCTC+CGG + tig0024140:6290-6309 Msa1414690:intergenic 65.0%
! GTTGAAGTTGGCGGTGGCGG+TGG - tig0024140:6442-6461 Msa1414690:CDS 65.0%
GGTGGCACCAGAGCTGAAGG+TGG - tig0024140:6460-6479 Msa1414690:intron 65.0%
GGCACCAGAGCTGAAGGTGG+TGG - tig0024140:6463-6482 Msa1414690:intron 65.0%
GCCACCACCACCTTCAGCTC+TGG + tig0024140:6290-6309 Msa1414690:intergenic 65.0%
! ACCGGAGCTGAAGGTGGTGG+AGG - tig0024140:6286-6305 Msa1414690:three_prime_UTR 65.0%
CCCTCCACCACCTTCAGCTC+CGG + tig0024140:6644-6663 Msa1414690:intergenic 65.0%
!! CCGGAGCTGAAGGTGGTGGA+GGG - tig0024140:6641-6660 Msa1414690:intron 65.0%
!! CGGAGCTGAAGGTGGTGGAG+GGG - tig0024140:6642-6661 Msa1414690:intron 65.0%
GGAGGGGAAAGGAGGACCGA+TGG - tig0024140:6658-6677 Msa1414690:CDS 65.0%
!! GTTGGTGGCGATGGCGGTTG+CGG - tig0024140:6739-6758 Msa1414690:CDS 65.0%
!! TCCTCGGATTGGGGGTGTCC+CGG + tig0024140:6930-6949 Msa1414690:intergenic 65.0%
CCTCGTCGCAATGGCGGTTC+CGG - tig0024140:7206-7225 Msa1414690:CDS 65.0%
! GGTGGCACCGGAGCTGAAGG+TGG - tig0024140:6280-6299 Msa1414690:three_prime_UTR 70.0%
! GGCACCGGAGCTGAAGGTGG+TGG - tig0024140:6283-6302 Msa1414690:three_prime_UTR 70.0%
GGCGGTGGCACCAGAGCTGA+AGG - tig0024140:6457-6476 Msa1414690:intron 70.0%
! GGTGGCACCGGAGCTGAAGG+TGG - tig0024140:6280-6299 Msa1414690:three_prime_UTR 70.0%
! GGCACCGGAGCTGAAGGTGG+TGG - tig0024140:6283-6302 Msa1414690:three_prime_UTR 70.0%
! GATGGCGGTTGCGGTGGTGG+TGG - tig0024140:6748-6767 Msa1414690:CDS 70.0%
!! GGTTGCGGTGGTGGTGGCGA+TGG - tig0024140:6754-6773 Msa1414690:CDS 70.0%
ACCGGGACACCCCCAATCCG+AGG - tig0024140:6926-6945 Msa1414690:CDS 70.0%
CCGGAACCGCCATTGCGACG+AGG + tig0024140:7209-7228 Msa1414690:intergenic 70.0%
! GGCGGTGGCACCGGAGCTGA+AGG - tig0024140:6277-6296 Msa1414690:three_prime_UTR 75.0%
! GGCGGTGGCACCGGAGCTGA+AGG - tig0024140:6277-6296 Msa1414690:three_prime_UTR 75.0%
! GGTGGCGATGGCGGTTGCGG+TGG - tig0024140:6742-6761 Msa1414690:CDS 75.0%
! GGCGATGGCGGTTGCGGTGG+TGG - tig0024140:6745-6764 Msa1414690:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0024140 gene 3105 10377 3105 ID=Msa1414690;Name=Msa1414690
tig0024140 mRNA 3105 10377 3105 ID=Msa1414690-mRNA-1;Parent=Msa1414690;Name=Msa1414690-mRNA-1;_AED=0.23;_eAED=0.23;_QI=430|1|1|1|0.42|0.37|8|1330|252
tig0024140 exon 3105 3597 3105 ID=Msa1414690-mRNA-1:exon:21934;Parent=Msa1414690-mRNA-1
tig0024140 exon 4653 4854 4653 ID=Msa1414690-mRNA-1:exon:21933;Parent=Msa1414690-mRNA-1
tig0024140 exon 5239 5537 5239 ID=Msa1414690-mRNA-1:exon:21932;Parent=Msa1414690-mRNA-1
tig0024140 exon 6042 6466 6042 ID=Msa1414690-mRNA-1:exon:21931;Parent=Msa1414690-mRNA-1
tig0024140 exon 6644 7387 6644 ID=Msa1414690-mRNA-1:exon:21930;Parent=Msa1414690-mRNA-1
tig0024140 exon 8514 8526 8514 ID=Msa1414690-mRNA-1:exon:21929;Parent=Msa1414690-mRNA-1
tig0024140 exon 9598 9693 9598 ID=Msa1414690-mRNA-1:exon:21928;Parent=Msa1414690-mRNA-1
tig0024140 exon 10131 10377 10131 ID=Msa1414690-mRNA-1:exon:21927;Parent=Msa1414690-mRNA-1
tig0024140 five_prime_UTR 10131 10377 10131 ID=Msa1414690-mRNA-1:five_prime_utr;Parent=Msa1414690-mRNA-1
tig0024140 five_prime_UTR 9598 9693 9598 ID=Msa1414690-mRNA-1:five_prime_utr;Parent=Msa1414690-mRNA-1
tig0024140 five_prime_UTR 8514 8526 8514 ID=Msa1414690-mRNA-1:five_prime_utr;Parent=Msa1414690-mRNA-1
tig0024140 five_prime_UTR 7314 7387 7314 ID=Msa1414690-mRNA-1:five_prime_utr;Parent=Msa1414690-mRNA-1
tig0024140 CDS 6644 7313 6644 ID=Msa1414690-mRNA-1:cds;Parent=Msa1414690-mRNA-1
tig0024140 CDS 6378 6466 6378 ID=Msa1414690-mRNA-1:cds;Parent=Msa1414690-mRNA-1
tig0024140 three_prime_UTR 6042 6377 6042 ID=Msa1414690-mRNA-1:three_prime_utr;Parent=Msa1414690-mRNA-1
tig0024140 three_prime_UTR 5239 5537 5239 ID=Msa1414690-mRNA-1:three_prime_utr;Parent=Msa1414690-mRNA-1
tig0024140 three_prime_UTR 4653 4854 4653 ID=Msa1414690-mRNA-1:three_prime_utr;Parent=Msa1414690-mRNA-1
tig0024140 three_prime_UTR 3105 3597 3105 ID=Msa1414690-mRNA-1:three_prime_utr;Parent=Msa1414690-mRNA-1
Gene Sequence

>Msa1414690

ATGCCTAATAGATATCCAAGCATTCAATATCCGATTGGAAAACCCAGGAGATCAAATAGGATTAGAGTTCGATGCGATGGCGAAAGGATGACGGATGGTGTTGAAGTTGGCGGTGGCACCGGAGCTGAAGGTGGTGGTGGCGAAAGGAGGACCGATATTGTAGTAGGTGGTGGTGGGGAAAGGAGAAGGTCCAAAAGAATTAGGGCCATTGTTGAAGTTGGTGGCGGTGGCAATGAGGCTGTAGATGGTGGTGGAGAAATAAGGATGGATGGTGTTGAAGTTGGCGGTGGCGGTGGCACCAGAGCTGAAGGTGGTGGTGGCGAAAGGAGGACAGATGGTGTAATAGGTGGTGGTGGGGAAAGGAGAAGGTCCAAAAGAATTAGGGCCATGGTTGAAGTTGGTGGCGGTGGCAATGAGGCTGTAGATGGTGGTGGAGAAATGAGGATGGATGGTGTTGAAGTTGGCGGTGGCACCGGAGCTGAAGGTGGTGGAGGGGAAAGGAGGACCGATGGAGTTGTAGATGGTGGTGGCGAAAGGAGAAGGTCAAAAAGAATCAGGGCAATGGATGACGTTGGTGGCGATGGCGGTTGCGGTGGTGGTGGCGATGGAGATGTACATGGTGGTTGTGGCGAGATATTAGAAAAGCTGAGGAGTGAACTCATTGAAACGAATAAAAATGTGGAGAAACAAGCTGGAGATATCAAGAAATTGGAAGAAACATTGAGCAGTTTACAAATAAGCATTGAACAATTTACATGA
Protein sequence

>Msa1414690

MPNRYPSIQYPIGKPRRSNRIRVRCDGERMTDGVEVGGGTGAEGGGGERRTDIVVGGGGERRRSKRIRAIVEVGGGGNEAVDGGGEIRMDGVEVGGGGGTRAEGGGGERRTDGVIGGGGERRRSKRIRAMVEVGGGGNEAVDGGGEMRMDGVEVGGGTGAEGGGGERRTDGVVDGGGERRRSKRIRAMDDVGGDGGCGGGGDGDVHGGCGEILEKLRSELIETNKNVEKQAGDIKKLEETLSSLQISIEQFT*