AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1389400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 224 sgRNAs with CRISPR-Local

Find 477 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTGCACCTTTCTCTTTC+TGG 0.090871 tig0021270:-100668 None:intergenic
ATTTATTGACTCCAACTTTC+AGG 0.166655 tig0021270:-103409 None:intergenic
TGAATTCCATTTAGCTATAT+TGG 0.219632 tig0021270:+102028 Msa1389400:three_prime_UTR
GGAGAAGGTCCAAAAGAATT+AGG 0.229212 tig0021270:+99669 Msa1389400:CDS
GGAGAAGGTCCAAAAGAATT+AGG 0.229212 tig0021270:+99849 Msa1389400:CDS
CCTGGATTGCTCAGCTGAAT+TGG 0.251429 tig0021270:+103256 Msa1389400:three_prime_UTR
GCTGTGCTCGTTGGCTCTTT+TGG 0.262041 tig0021270:+103504 Msa1389400:three_prime_UTR
AGCTTGCCTTCAGCAAGTTT+TGG 0.267697 tig0021270:+101298 Msa1389400:three_prime_UTR
AACAATGGCCCTAATTCTTT+TGG 0.272373 tig0021270:-99678 None:intergenic
AACCATGGCCCTAATTCTTT+TGG 0.275168 tig0021270:-99858 None:intergenic
AATAAATTTATCGGGCCTTT+TGG 0.277715 tig0021270:+103429 Msa1389400:three_prime_UTR
CCAAGCGCGAGACTAATATT+TGG 0.280273 tig0021270:+103470 Msa1389400:three_prime_UTR
TCCGATCTGATGCTCGAAAA+TGG 0.289314 tig0021270:+96505 Msa1389400:five_prime_UTR
AGCTGGAGATATCAAGAAAT+TGG 0.296400 tig0021270:+100354 Msa1389400:CDS
TGAATGCTTGGATATCTATT+AGG 0.305363 tig0021270:-99491 None:intergenic
TTGAAGCAACTCTTCGAATT+CGG 0.314367 tig0021270:+101949 Msa1389400:three_prime_UTR
TCATCGCCAATATAGCTAAA+TGG 0.320678 tig0021270:-102034 None:intergenic
TGAAGCAACTCTTCGAATTC+GGG 0.326058 tig0021270:+101950 Msa1389400:three_prime_UTR
GAGTCAATAAATAAATTTAT+CGG 0.329465 tig0021270:+103420 Msa1389400:three_prime_UTR
CCATTATCTCTTTCCTATAC+AGG 0.329932 tig0021270:+100738 Msa1389400:three_prime_UTR
GTAACAAAGCACATATAAAA+AGG 0.337845 tig0021270:+100622 Msa1389400:three_prime_UTR
GAGTGCAGAAGTAATGTAAA+AGG 0.340817 tig0021270:+100438 Msa1389400:three_prime_UTR
GGCGATGGCGGTTGCGGTGG+TGG 0.346111 tig0021270:+100064 Msa1389400:CDS
ATCTAGACTCCGACACGTTC+CGG 0.356468 tig0021270:+103377 Msa1389400:three_prime_UTR
CTCTGAATCTGAACAGTCTT+AGG 0.361731 tig0021270:-97150 None:intergenic
CAAGTTTGATGCTTGCTTCA+AGG 0.362213 tig0021270:+101515 Msa1389400:three_prime_UTR
CCTCGTCGCAATGGCGGTTC+CGG 0.368561 tig0021270:+100525 Msa1389400:three_prime_UTR
CTTAGGCCACTTGTCGAATC+TGG 0.370934 tig0021270:-97133 None:intergenic
TCTAATCCTATTTGATCTCC+TGG 0.371886 tig0021270:-99531 None:intergenic
AACTTTCAGGTTGGGTCTGC+CGG 0.373589 tig0021270:-103396 None:intergenic
GGATATTCAAATGCAAGAAA+TGG 0.373656 tig0021270:+101536 Msa1389400:three_prime_UTR
GTGAATAAACACGCTCTTTG+TGG 0.376971 tig0021270:+103668 Msa1389400:three_prime_UTR
TTGACTCCAACTTTCAGGTT+GGG 0.377248 tig0021270:-103404 None:intergenic
CCCTCCACCACCTTCAGCTC+CGG 0.377700 tig0021270:-99960 None:intergenic
GAAACAATGTTTACCTGTAT+AGG 0.381243 tig0021270:-100751 None:intergenic
AGGAGGACAGATGGTGTAAT+AGG 0.382120 tig0021270:+99812 Msa1389400:CDS
GGTGTTGAAGTTGGCGGTGG+CGG 0.382336 tig0021270:+99758 Msa1389400:CDS
TTTCACTTCGCAAATTTCAT+TGG 0.387078 tig0021270:+96584 Msa1389400:five_prime_UTR
ATGTGCTAAAGTCCGCATTC+TGG 0.389059 tig0021270:-103289 None:intergenic
AACTTGTTGATGCTTCAATA+TGG 0.391748 tig0021270:-99431 None:intergenic
GAAAACCCAGGAGATCAAAT+AGG 0.395401 tig0021270:+99525 Msa1389400:CDS
TGAACAATTCCTTCCTCAAA+AGG 0.408776 tig0021270:-102125 None:intergenic
GCCACCACCACCTTCAGCTC+TGG 0.410878 tig0021270:-99786 None:intergenic
GCATGACGACTTGAATTTCA+TGG 0.412646 tig0021270:+103345 Msa1389400:three_prime_UTR
CCAATTCAGCTGAGCAATCC+AGG 0.420223 tig0021270:-103256 None:intergenic
CTGGATTGCTCAGCTGAATT+GGG 0.421005 tig0021270:+103257 Msa1389400:three_prime_UTR
ATGGTTGAAGTTGGTGGCGG+TGG 0.428827 tig0021270:+99875 Msa1389400:CDS
TGAAATTTGCGAAGTGAAAA+CGG 0.429932 tig0021270:-96580 None:intergenic
CCAATCGGATATTGAATGCT+TGG 0.430148 tig0021270:-99503 None:intergenic
CCTGTATAGGAAAGAGATAA+TGG 0.430433 tig0021270:-100738 None:intergenic
CAAGCGCGAGACTAATATTT+GGG 0.431684 tig0021270:+103471 Msa1389400:three_prime_UTR
GAGAAGGTCCAAAAGAATTA+GGG 0.431984 tig0021270:+99670 Msa1389400:CDS
GAGAAGGTCCAAAAGAATTA+GGG 0.431984 tig0021270:+99850 Msa1389400:CDS
CTGAAGGTGGTGGAGGGGAA+AGG 0.432104 tig0021270:+99966 Msa1389400:CDS
ACCGGAGCTGAAGGTGGTGG+AGG 0.432907 tig0021270:+99959 Msa1389400:CDS
TAATAGGTGGTGGTGGGGAA+AGG 0.439707 tig0021270:+99828 Msa1389400:CDS
GGCTTCTACGGGTAATGTTG+TGG 0.441520 tig0021270:+103321 Msa1389400:three_prime_UTR
TAGATGGTGGTGGAGAAATA+AGG 0.445546 tig0021270:+99729 Msa1389400:CDS
TAGTAGGTGGTGGTGGGGAA+AGG 0.449530 tig0021270:+99648 Msa1389400:CDS
GCTTCTACGGGTAATGTTGT+GGG 0.449565 tig0021270:+103322 Msa1389400:three_prime_UTR
GCCACCACCACCTTCAGCTC+CGG 0.450368 tig0021270:-99606 None:intergenic
ATTGTTGAAGTTGGTGGCGG+TGG 0.454080 tig0021270:+99695 Msa1389400:CDS
CATACGGGGACTGGCTTCTA+CGG 0.455310 tig0021270:+103309 Msa1389400:three_prime_UTR
GTTGAAGTTGGCGGTGGCGG+TGG 0.456963 tig0021270:+99761 Msa1389400:CDS
GAGTCTGAAAGGAGATTAAA+CGG 0.462557 tig0021270:-96426 None:intergenic
GGCACCGGAGCTGAAGGTGG+TGG 0.463445 tig0021270:+99956 Msa1389400:CDS
ATGGATGACGTTGGTGGCGA+TGG 0.464563 tig0021270:+100049 Msa1389400:CDS
GTTGGTGGCGATGGCGGTTG+CGG 0.466718 tig0021270:+100058 Msa1389400:CDS
GTGACGGCCACACCTGATAT+AGG 0.469948 tig0021270:+100465 Msa1389400:three_prime_UTR
CTGAAGGTGGTGGTGGCGAA+AGG 0.471160 tig0021270:+99612 Msa1389400:CDS
AGTCAATAAATAAATTTATC+GGG 0.471486 tig0021270:+103421 Msa1389400:three_prime_UTR
GATGGCGGTTGCGGTGGTGG+TGG 0.474313 tig0021270:+100067 Msa1389400:CDS
ATTAGGGCCATTGTTGAAGT+TGG 0.475450 tig0021270:+99686 Msa1389400:CDS
ACCACCACCTACTACAATAT+CGG 0.476563 tig0021270:-99639 None:intergenic
CAGAAGTAATGTAAAAGGTA+AGG 0.479588 tig0021270:+100443 Msa1389400:three_prime_UTR
ACCGGAGCTGAAGGTGGTGG+TGG 0.481766 tig0021270:+99605 Msa1389400:CDS
AGGACCGATGGAGTTGTAGA+TGG 0.484578 tig0021270:+99989 Msa1389400:CDS
ACTATTGCTGCTGTGCTCGT+TGG 0.485368 tig0021270:+103495 Msa1389400:three_prime_UTR
GGTTGCGGTGGTGGTGGCGA+TGG 0.492001 tig0021270:+100073 Msa1389400:CDS
AGACGAATCAACTACCAATC+TGG 0.492221 tig0021270:+100692 Msa1389400:three_prime_UTR
AGGGCCATTGTTGAAGTTGG+TGG 0.492247 tig0021270:+99689 Msa1389400:CDS
TTGTAGATGGTGGTGGCGAA+AGG 0.493499 tig0021270:+100002 Msa1389400:CDS
GATGGTGTAATAGGTGGTGG+TGG 0.494417 tig0021270:+99821 Msa1389400:CDS
ATGGATGGTGTTGAAGTTGG+CGG 0.497191 tig0021270:+99932 Msa1389400:CDS
CCGGAGCTGAAGGTGGTGGA+GGG 0.497991 tig0021270:+99960 Msa1389400:CDS
GTTGAAGTTGGCGGTGGCAC+CGG 0.498250 tig0021270:+99587 Msa1389400:CDS
GTTGAAGTTGGCGGTGGCAC+CGG 0.498250 tig0021270:+99941 Msa1389400:CDS
TCAGCTGAATTGGGATCTGT+TGG 0.499150 tig0021270:+103266 Msa1389400:three_prime_UTR
TCTGAAAATATCACGCCAAA+AGG 0.500549 tig0021270:-103444 None:intergenic
TTCAGATTCAGAGGAAGAAG+AGG 0.501652 tig0021270:+97160 Msa1389400:five_prime_UTR
GGCACCGGAGCTGAAGGTGG+TGG 0.501956 tig0021270:+99602 Msa1389400:CDS
GAGTTCGATGCGATGGCGAA+AGG 0.502422 tig0021270:+99552 Msa1389400:CDS
GATATTGTAGTAGGTGGTGG+TGG 0.503534 tig0021270:+99641 Msa1389400:CDS
GGCGGTGGCACCGGAGCTGA+AGG 0.503621 tig0021270:+99596 Msa1389400:CDS
GGCGGTGGCACCGGAGCTGA+AGG 0.503621 tig0021270:+99950 Msa1389400:CDS
ATGGTGTAATAGGTGGTGGT+GGG 0.503761 tig0021270:+99822 Msa1389400:CDS
CTAATCCTATTTGATCTCCT+GGG 0.505911 tig0021270:-99530 None:intergenic
GGTGGCAATGAGGCTGTAGA+TGG 0.510887 tig0021270:+99713 Msa1389400:CDS
GGTGGCAATGAGGCTGTAGA+TGG 0.510887 tig0021270:+99893 Msa1389400:CDS
ACTTTAGCACATACGGGGAC+TGG 0.511795 tig0021270:+103300 Msa1389400:three_prime_UTR
GGCAGACCCAACCTGAAAGT+TGG 0.512293 tig0021270:+103398 Msa1389400:three_prime_UTR
GGCACCAGAGCTGAAGGTGG+TGG 0.512569 tig0021270:+99782 Msa1389400:CDS
ACCGCCACCAACTTCAACAA+TGG 0.518041 tig0021270:-99693 None:intergenic
AGGATGGATGGTGTTGAAGT+TGG 0.519257 tig0021270:+99929 Msa1389400:CDS
TTCAAATGCAAGAAATGGAC+GGG 0.522978 tig0021270:+101541 Msa1389400:three_prime_UTR
ATGAAGAGTGTTTGAAATGT+GGG 0.523905 tig0021270:+102081 Msa1389400:three_prime_UTR
AGGATGGATGGTGTTGAAGT+TGG 0.523994 tig0021270:+99749 Msa1389400:CDS
AACACTCTTCATATGTAGCA+TGG 0.525664 tig0021270:-102070 None:intergenic
GAAGCCACTGAGAACTAGTA+TGG 0.525821 tig0021270:+101271 Msa1389400:three_prime_UTR
ATTAGGGCCATGGTTGAAGT+TGG 0.525869 tig0021270:+99866 Msa1389400:CDS
GGAGGGGAAAGGAGGACCGA+TGG 0.526035 tig0021270:+99977 Msa1389400:CDS
AGGGCCATGGTTGAAGTTGG+TGG 0.526237 tig0021270:+99869 Msa1389400:CDS
ATTGACTCCAACTTTCAGGT+TGG 0.526314 tig0021270:-103405 None:intergenic
AATGCGGACTTTAGCACATA+CGG 0.526953 tig0021270:+103293 Msa1389400:three_prime_UTR
ATGGATGGTGTTGAAGTTGG+CGG 0.526957 tig0021270:+99752 Msa1389400:CDS
GGAGATGTACATGGTGGTTG+TGG 0.527779 tig0021270:+100094 Msa1389400:CDS
GATGGAGAGGACGGCGAATG+AGG 0.528403 tig0021270:+101974 Msa1389400:three_prime_UTR
GGCGGTGGCACCAGAGCTGA+AGG 0.528855 tig0021270:+99776 Msa1389400:CDS
AACTCTTCGAATTCGGGAGA+TGG 0.529922 tig0021270:+101956 Msa1389400:three_prime_UTR
ACCGCCACCAACTTCAACCA+TGG 0.531071 tig0021270:-99873 None:intergenic
AATCTAGTCCAGAAAGAGAA+AGG 0.531970 tig0021270:+100660 Msa1389400:three_prime_UTR
CCAAATATTAGTCTCGCGCT+TGG 0.532147 tig0021270:-103470 None:intergenic
CAAACTGAAGTTGAACCATC+AGG 0.532569 tig0021270:-101356 None:intergenic
AACAGGCAAGAAGAGACAGC+CGG 0.534721 tig0021270:+101322 Msa1389400:three_prime_UTR
ACCAGAGCTGAAGGTGGTGG+TGG 0.536501 tig0021270:+99785 Msa1389400:CDS
TTCGAATTCGGGAGATGGAG+AGG 0.538631 tig0021270:+101961 Msa1389400:three_prime_UTR
CTGAAGGTGGTGGTGGCGAA+AGG 0.539321 tig0021270:+99792 Msa1389400:CDS
GTGGTGGTGGGGAAAGGAGA+AGG 0.544468 tig0021270:+99654 Msa1389400:CDS
GTGGTGGTGGGGAAAGGAGA+AGG 0.544468 tig0021270:+99834 Msa1389400:CDS
CTGTTCCCAAAACTTGCTGA+AGG 0.546763 tig0021270:-101304 None:intergenic
AGGAGGACCGATATTGTAGT+AGG 0.547868 tig0021270:+99632 Msa1389400:CDS
CGAGGACATCACGGATTTAG+CGG 0.548208 tig0021270:-100507 None:intergenic
GCCATTGTTGAAGTTGGTGG+CGG 0.549648 tig0021270:+99692 Msa1389400:CDS
GGTGGCGATGGCGGTTGCGG+TGG 0.549823 tig0021270:+100061 Msa1389400:CDS
ACGGCGAATGAGGAGACTAA+TGG 0.553816 tig0021270:+101984 Msa1389400:three_prime_UTR
GGTGGCACCGGAGCTGAAGG+TGG 0.553954 tig0021270:+99599 Msa1389400:CDS
GGTGGCACCGGAGCTGAAGG+TGG 0.553954 tig0021270:+99953 Msa1389400:CDS
ACCGATATTGTAGTAGGTGG+TGG 0.554808 tig0021270:+99638 Msa1389400:CDS
GGAAGCTATTCGAGAAGAAG+AGG 0.554823 tig0021270:+97103 Msa1389400:intron
CAGAGAAGAGAGCTAAAGAT+CGG 0.559209 tig0021270:-96549 None:intergenic
TGGTGGTGGAGAAATAAGGA+TGG 0.560370 tig0021270:+99733 Msa1389400:CDS
CCAAGCATTCAATATCCGAT+TGG 0.562018 tig0021270:+99503 Msa1389400:CDS
ATACGGGGACTGGCTTCTAC+GGG 0.565321 tig0021270:+103310 Msa1389400:three_prime_UTR
TATGAAGAGTGTTTGAAATG+TGG 0.566182 tig0021270:+102080 Msa1389400:three_prime_UTR
CGGAGCTGAAGGTGGTGGAG+GGG 0.566193 tig0021270:+99961 Msa1389400:CDS
GATGGTGTTGAAGTTGGCGG+TGG 0.568175 tig0021270:+99755 Msa1389400:CDS
GATTTAGCGGAGGCTTTGCG+CGG 0.569231 tig0021270:-100494 None:intergenic
GGTGGAGAAATGAGGATGGA+TGG 0.569241 tig0021270:+99917 Msa1389400:CDS
ATGACGGATGGTGTTGAAGT+TGG 0.569733 tig0021270:+99575 Msa1389400:CDS
ATGGTGGTGGCGAAAGGAGA+AGG 0.570011 tig0021270:+100008 Msa1389400:CDS
ACGGATGGTGTTGAAGTTGG+CGG 0.570486 tig0021270:+99578 Msa1389400:CDS
ACAGGCAAGAAGAGACAGCC+GGG 0.572058 tig0021270:+101323 Msa1389400:three_prime_UTR
ACAGATGGTGTAATAGGTGG+TGG 0.573984 tig0021270:+99818 Msa1389400:CDS
CCGTGATGTCCTCGTCGCAA+TGG 0.574492 tig0021270:+100516 Msa1389400:three_prime_UTR
ATATTGTAGTAGGTGGTGGT+GGG 0.574784 tig0021270:+99642 Msa1389400:CDS
AGGATTAGAGTTCGATGCGA+TGG 0.575134 tig0021270:+99545 Msa1389400:CDS
ATGCGGACTTTAGCACATAC+GGG 0.575592 tig0021270:+103294 Msa1389400:three_prime_UTR
AAGGTGGTGGTGGCGAAAGG+AGG 0.577210 tig0021270:+99615 Msa1389400:CDS
TGGTGGTGGAGAAATGAGGA+TGG 0.578840 tig0021270:+99913 Msa1389400:CDS
CTAAGACTGTTCAGATTCAG+AGG 0.581573 tig0021270:+97151 Msa1389400:five_prime_UTR
GCCATGGTTGAAGTTGGTGG+CGG 0.582925 tig0021270:+99872 Msa1389400:CDS
AAGGTGGTGGAGGGGAAAGG+AGG 0.586200 tig0021270:+99969 Msa1389400:CDS
ATAACTGAAACTAAATCGAT+CGG 0.586558 tig0021270:-100557 None:intergenic
CTAATGGTGAATGTAGTGAA+AGG 0.588155 tig0021270:+102000 Msa1389400:three_prime_UTR
ATTCAAATGCAAGAAATGGA+CGG 0.588460 tig0021270:+101540 Msa1389400:three_prime_UTR
TTGGGTCTGCCGGAACGTGT+CGG 0.588603 tig0021270:-103386 None:intergenic
CCACTGAGAACTAGTATGGT+GGG 0.590558 tig0021270:+101275 Msa1389400:three_prime_UTR
CAATGGAGAAAGAGTCTGAA+AGG 0.590894 tig0021270:-96437 None:intergenic
AGCAAGCATCAAACTTGTGA+GGG 0.592861 tig0021270:-101509 None:intergenic
GTCCAAAAGAATTAGGGCCA+TGG 0.594851 tig0021270:+99856 Msa1389400:CDS
AATCGATCGGAGAGTTCTAC+CGG 0.594959 tig0021270:-100544 None:intergenic
AGGGCAATGGATGACGTTGG+TGG 0.595874 tig0021270:+100043 Msa1389400:CDS
ATGCGATGGCGAAAGGATGA+CGG 0.597203 tig0021270:+99559 Msa1389400:CDS
GAACACAGTTGAAACCAGAT+TGG 0.599444 tig0021270:-100706 None:intergenic
AAGGTGGTGGTGGCGAAAGG+AGG 0.602934 tig0021270:+99795 Msa1389400:CDS
GGTGGAGAAATAAGGATGGA+TGG 0.604701 tig0021270:+99737 Msa1389400:CDS
GATGGTGTTGAAGTTGGCGG+TGG 0.606604 tig0021270:+99935 Msa1389400:CDS
GCCACTGAGAACTAGTATGG+TGG 0.607785 tig0021270:+101274 Msa1389400:three_prime_UTR
TGGTGTAATAGGTGGTGGTG+GGG 0.608606 tig0021270:+99823 Msa1389400:CDS
ATTTGACCAGATTCGACAAG+TGG 0.608851 tig0021270:+97127 Msa1389400:five_prime_UTR
AGGACAGATGGTGTAATAGG+TGG 0.609112 tig0021270:+99815 Msa1389400:CDS
CCGGGAAAAGAGATGCCTGA+TGG 0.609734 tig0021270:+101341 Msa1389400:three_prime_UTR
ACCACCATCTACAACTCCAT+CGG 0.611181 tig0021270:-99993 None:intergenic
AAGCAAGCATCAAACTTGTG+AGG 0.613257 tig0021270:-101510 None:intergenic
GATGGAGTTGTAGATGGTGG+TGG 0.615734 tig0021270:+99995 Msa1389400:CDS
TGATGTCCTCGTCGCAATGG+CGG 0.616829 tig0021270:+100519 Msa1389400:three_prime_UTR
CTTCTACGGGTAATGTTGTG+GGG 0.617417 tig0021270:+103323 Msa1389400:three_prime_UTR
ATGTTAATGGAAGTGACTGC+AGG 0.621000 tig0021270:+101414 Msa1389400:three_prime_UTR
GATGGTGTTGAAGTTGGCGG+TGG 0.623232 tig0021270:+99581 Msa1389400:CDS
AGAGTGTTTGAAATGTGGGA+TGG 0.624246 tig0021270:+102085 Msa1389400:three_prime_UTR
GGTGGCGATGGAGATGTACA+TGG 0.626469 tig0021270:+100085 Msa1389400:CDS
GAAGCTATTCGAGAAGAAGA+GGG 0.626506 tig0021270:+97104 Msa1389400:intron
AATGAGGCTGTAGATGGTGG+TGG 0.626981 tig0021270:+99719 Msa1389400:CDS
AATGAGGCTGTAGATGGTGG+TGG 0.626981 tig0021270:+99899 Msa1389400:CDS
AATTCGGGAGATGGAGAGGA+CGG 0.628944 tig0021270:+101965 Msa1389400:three_prime_UTR
GATGACGTTGGTGGCGATGG+CGG 0.631346 tig0021270:+100052 Msa1389400:CDS
GGCAATGAGGCTGTAGATGG+TGG 0.632531 tig0021270:+99716 Msa1389400:CDS
GGCAATGAGGCTGTAGATGG+TGG 0.632531 tig0021270:+99896 Msa1389400:CDS
AATATCCGATTGGAAAACCC+AGG 0.633825 tig0021270:+99513 Msa1389400:CDS
ATGGCAATTGAAGCTCGTTG+AGG 0.635193 tig0021270:+96524 Msa1389400:five_prime_UTR
TAATGTAAAAGGTAAGGTGA+CGG 0.636801 tig0021270:+100449 Msa1389400:three_prime_UTR
TATTGTAGTAGGTGGTGGTG+GGG 0.637343 tig0021270:+99643 Msa1389400:CDS
GGGATCTGTTGGCCAGAATG+CGG 0.637679 tig0021270:+103277 Msa1389400:three_prime_UTR
GCTTGGATATCTATTAGGCA+TGG 0.639413 tig0021270:-99486 None:intergenic
GGTGGCGAAAGGAGGACAGA+TGG 0.640376 tig0021270:+99803 Msa1389400:CDS
TAGATGGTGGTGGAGAAATG+AGG 0.642475 tig0021270:+99909 Msa1389400:CDS
CGAGCATCAGATCGGAAGAG+CGG 0.651059 tig0021270:-96498 None:intergenic
CCATTGCGACGAGGACATCA+CGG 0.652805 tig0021270:-100516 None:intergenic
GGTGGCACCAGAGCTGAAGG+TGG 0.653943 tig0021270:+99779 Msa1389400:CDS
GCGAGATATTAGAAAAGCTG+AGG 0.654014 tig0021270:+100116 Msa1389400:CDS
AGGACCGATATTGTAGTAGG+TGG 0.655795 tig0021270:+99635 Msa1389400:CDS
ATCAGGGCAATGGATGACGT+TGG 0.657602 tig0021270:+100040 Msa1389400:CDS
CCGGAACCGCCATTGCGACG+AGG 0.668033 tig0021270:-100525 None:intergenic
GATGTGAAGTGTGCAGACAG+CGG 0.669637 tig0021270:+101459 Msa1389400:three_prime_UTR
AGTTGGTGGCGGTGGCAATG+AGG 0.672386 tig0021270:+99703 Msa1389400:CDS
AGTTGGTGGCGGTGGCAATG+AGG 0.672386 tig0021270:+99883 Msa1389400:CDS
TCAGTTTGAAGCCTTCTGTG+CGG 0.678971 tig0021270:+101371 Msa1389400:three_prime_UTR
GGACATCACGGATTTAGCGG+AGG 0.683899 tig0021270:-100504 None:intergenic
ACCGATGGAGTTGTAGATGG+TGG 0.690749 tig0021270:+99992 Msa1389400:CDS
TGTCAGGGAAACATTGCTGA+AGG 0.696155 tig0021270:+103198 Msa1389400:intron
TGCGGACTTTAGCACATACG+GGG 0.719539 tig0021270:+103295 Msa1389400:three_prime_UTR
CCCACCATACTAGTTCTCAG+TGG 0.729319 tig0021270:-101275 None:intergenic
GATGGCGAAAGGATGACGGA+TGG 0.756508 tig0021270:+99563 Msa1389400:CDS
GGCGATGGAGATGTACATGG+TGG 0.786952 tig0021270:+100088 Msa1389400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTTTTTTTTTTTT+TGG + tig0021270:101586-101605 Msa1389400:intron 0.0%
!! TGATTTATAAAAAACAATAT+GGG - tig0021270:101907-101926 None:intergenic 10.0%
!! ATGATTTATAAAAAACAATA+TGG - tig0021270:101908-101927 None:intergenic 10.0%
!! ATCACTATCATTTATTAAAA+TGG - tig0021270:103125-103144 None:intergenic 15.0%
!! GAGTCAATAAATAAATTTAT+CGG + tig0021270:103420-103439 Msa1389400:three_prime_UTR 15.0%
!! AGTCAATAAATAAATTTATC+GGG + tig0021270:103421-103440 Msa1389400:three_prime_UTR 15.0%
!! AAAAACTTCAGTTATTTATT+TGG - tig0021270:103579-103598 None:intergenic 15.0%
!! AATTGAATATAGAATCCTTA+GGG - tig0021270:96722-96741 None:intergenic 20.0%
!! ACTTATTTGAACTTATTTAG+TGG + tig0021270:96887-96906 Msa1389400:intron 20.0%
!!! AAGTTTTTACACAATTAACA+TGG - tig0021270:97509-97528 None:intergenic 20.0%
!! AAAAATTCAGAGAATTTCAA+TGG - tig0021270:98008-98027 None:intergenic 20.0%
!!! AAGTTTTAACACAATTAACA+TGG - tig0021270:98167-98186 None:intergenic 20.0%
!!! CAAAAGTACAAACTTAATAA+TGG - tig0021270:98368-98387 None:intergenic 20.0%
!!! CATTATTAAGTTTGTACTTT+TGG + tig0021270:98366-98385 Msa1389400:intron 20.0%
!! AGCAAAAGACAAAAATTTAA+TGG + tig0021270:98510-98529 Msa1389400:intron 20.0%
!!! AAGTTTTAACACAATTAACA+TGG - tig0021270:98167-98186 None:intergenic 20.0%
!!! CAAAAGTACAAACTTAATAA+TGG - tig0021270:98368-98387 None:intergenic 20.0%
!!! CATTATTAAGTTTGTACTTT+TGG + tig0021270:98366-98385 Msa1389400:intron 20.0%
!! AGCAAAAGACAAAAATTTAA+TGG + tig0021270:98510-98529 Msa1389400:intron 20.0%
!! AGAAAATAGAAGTTTATAGA+GGG - tig0021270:99352-99371 None:intergenic 20.0%
!! AAGAAAATAGAAGTTTATAG+AGG - tig0021270:99353-99372 None:intergenic 20.0%
!! TCATTAAAATGCACAAATAT+TGG + tig0021270:100951-100970 Msa1389400:intron 20.0%
!! CAATAAAAAAAGGAAAGAAA+GGG - tig0021270:101082-101101 None:intergenic 20.0%
!! ACAATAAAAAAAGGAAAGAA+AGG - tig0021270:101083-101102 None:intergenic 20.0%
!! GAAAATTCGACAATAAAAAA+AGG - tig0021270:101092-101111 None:intergenic 20.0%
!!! TTTCTGTGTAATTTTTGAAA+TGG + tig0021270:101108-101127 Msa1389400:intron 20.0%
!!! TTTCTGTGTAATTTTTGAAA+TGG + tig0021270:101108-101127 Msa1389400:intron 20.0%
!!! ATAAAAGTATCTGAGATTTT+AGG + tig0021270:102541-102560 Msa1389400:intron 20.0%
!!! GCTCTAACTTTTTTATATAT+AGG - tig0021270:102600-102619 None:intergenic 20.0%
!! TGTGTTTAGTATAAAAATCT+TGG + tig0021270:102850-102869 Msa1389400:intron 20.0%
!! GTGTTTAGTATAAAAATCTT+GGG + tig0021270:102851-102870 Msa1389400:intron 20.0%
!!! AACTGAAGTTTTTTAAGTAA+CGG + tig0021270:103586-103605 Msa1389400:three_prime_UTR 20.0%
! CAATTGAATATAGAATCCTT+AGG - tig0021270:96723-96742 None:intergenic 25.0%
! CATGATACAAAAACAGAATT+TGG - tig0021270:96778-96797 None:intergenic 25.0%
! ATCAAATCTAATGTCCTTAT+TGG + tig0021270:97065-97084 Msa1389400:intron 25.0%
! TATTTAGCAATTGATCTGTA+TGG - tig0021270:97551-97570 None:intergenic 25.0%
! TACAGATCAATTGCTAAATA+TGG + tig0021270:97551-97570 Msa1389400:intron 25.0%
!! ATACTTCTAAAGAAAACACT+TGG - tig0021270:97594-97613 None:intergenic 25.0%
! AAAAACTACCAAAGGAAATA+AGG - tig0021270:97657-97676 None:intergenic 25.0%
!!! TATTTCCTTTGGTAGTTTTT+TGG + tig0021270:97657-97676 Msa1389400:intron 25.0%
! TTAAACCAAAAAACTACCAA+AGG - tig0021270:97665-97684 None:intergenic 25.0%
! AAATTTGTACTACTTTGCTT+TGG + tig0021270:97857-97876 Msa1389400:intron 25.0%
! ATTATCACTAAGTGAATCAT+TGG - tig0021270:97884-97903 None:intergenic 25.0%
! TCAATTTCCTGATTTAATTG+AGG - tig0021270:97979-97998 None:intergenic 25.0%
! ATGTTGAAATGCTAGATAAA+AGG - tig0021270:98065-98084 None:intergenic 25.0%
! TTAACATGGTTTAATCATTG+AGG - tig0021270:97495-97514 None:intergenic 25.0%
! AGTCAATCACACAATTAAAA+TGG - tig0021270:98209-98228 None:intergenic 25.0%
!!! TAGTTGTTTTTGTGAATCAA+AGG + tig0021270:98602-98621 Msa1389400:intron 25.0%
! TATTGTTCTTATAGAAAGTG+TGG + tig0021270:98668-98687 Msa1389400:intron 25.0%
! TTAACATGGTTTAATCATTG+AGG - tig0021270:97495-97514 None:intergenic 25.0%
! AGTCAATCACACAATTAAAA+TGG - tig0021270:98209-98228 None:intergenic 25.0%
!!! TAGTTGTTTTTGTGAATCAA+AGG + tig0021270:98602-98621 Msa1389400:intron 25.0%
! TATTGTTCTTATAGAAAGTG+TGG + tig0021270:98668-98687 Msa1389400:intron 25.0%
!! TCCTTTATTTATTGAATCTG+TGG + tig0021270:99310-99329 Msa1389400:intron 25.0%
! TGAAAATACAATTAGTGTGA+TGG - tig0021270:100302-100321 None:intergenic 25.0%
! ATAACTGAAACTAAATCGAT+CGG - tig0021270:100560-100579 None:intergenic 25.0%
! GTAACAAAGCACATATAAAA+AGG + tig0021270:100622-100641 Msa1389400:three_prime_UTR 25.0%
!!! GTGTTTTTTAAGTCAATGTT+TGG + tig0021270:100819-100838 Msa1389400:intron 25.0%
! AGAGAGAGAATTAAAAAGAA+GGG - tig0021270:101057-101076 None:intergenic 25.0%
! AAGAGAGAGAATTAAAAAGA+AGG - tig0021270:101058-101077 None:intergenic 25.0%
!!! AGTTTTTTCTAAATCAGCAA+AGG - tig0021270:101638-101657 None:intergenic 25.0%
! TATCATTGAATTTATCAGCA+AGG - tig0021270:101694-101713 None:intergenic 25.0%
! ACAAACATAACATGTATAGA+GGG - tig0021270:101857-101876 None:intergenic 25.0%
! AACAAACATAACATGTATAG+AGG - tig0021270:101858-101877 None:intergenic 25.0%
!! CATGTACTTACATTATTTTC+AGG + tig0021270:101925-101944 Msa1389400:intron 25.0%
! TGAATTCCATTTAGCTATAT+TGG + tig0021270:102028-102047 Msa1389400:three_prime_UTR 25.0%
!!! TTGTTTTGTATGAGCATATA+TGG + tig0021270:102168-102187 Msa1389400:intron 25.0%
! TGTTTCATATGAGTAATTAG+AGG + tig0021270:102819-102838 Msa1389400:intron 25.0%
!! CTGAATGTTGACATTTTTAT+TGG + tig0021270:103175-103194 Msa1389400:intron 25.0%
!!! ACTGAAGTTTTTTAAGTAAC+GGG + tig0021270:103587-103606 Msa1389400:three_prime_UTR 25.0%
!! TTTTCTCAGACAATTATCAA+AGG - tig0021270:103646-103665 None:intergenic 25.0%
TGAAATTTGCGAAGTGAAAA+CGG - tig0021270:96583-96602 None:intergenic 30.0%
TTTCACTTCGCAAATTTCAT+TGG + tig0021270:96584-96603 Msa1389400:five_prime_UTR 30.0%
!! TATCTGATATTTGCTATCTC+AGG + tig0021270:96841-96860 Msa1389400:intron 30.0%
TAAACTGAAACAATCCAAAC+AGG - tig0021270:96868-96887 None:intergenic 30.0%
!! TAGTGGAATAAGTTTTGTAG+TGG + tig0021270:96904-96923 Msa1389400:intron 30.0%
! TGACTTATTTGACTTATCTC+AGG + tig0021270:96933-96952 Msa1389400:intron 30.0%
! GACTTATTTGACTTATCTCA+GGG + tig0021270:96934-96953 Msa1389400:intron 30.0%
AACACCAATCAAAACAAAAC+AGG - tig0021270:96960-96979 None:intergenic 30.0%
TTTGTGCTCACTACTAAAAT+GGG - tig0021270:97009-97028 None:intergenic 30.0%
! TTTTGTGCTCACTACTAAAA+TGG - tig0021270:97010-97029 None:intergenic 30.0%
!! AATGTCCTTATTGGTTGTTT+TGG + tig0021270:97074-97093 Msa1389400:intron 30.0%
TTCATCCAAAACAACCAATA+AGG - tig0021270:97082-97101 None:intergenic 30.0%
!!! TATTGGTTGTTTTGGATGAA+TGG + tig0021270:97082-97101 Msa1389400:intron 30.0%
AAACCATATAGACTGATACA+CGG - tig0021270:97312-97331 None:intergenic 30.0%
! TATCAGTCTATATGGTTTGT+AGG + tig0021270:97314-97333 Msa1389400:intron 30.0%
TTTCAACATTTAGCATGTAC+TGG + tig0021270:97418-97437 Msa1389400:intron 30.0%
! ATACCATACCTTATTTCCTT+TGG + tig0021270:97646-97665 Msa1389400:intron 30.0%
TGCAACTTTATCAGCTTAAA+AGG - tig0021270:97741-97760 None:intergenic 30.0%
! TTTTAAGCTGATAAAGTTGC+AGG + tig0021270:97740-97759 Msa1389400:intron 30.0%
TGATTTAATTGAGGCAATGT+TGG - tig0021270:97970-97989 None:intergenic 30.0%
AACATTGCCTCAATTAAATC+AGG + tig0021270:97969-97988 Msa1389400:intron 30.0%
TTTCAACATTTAGCATGTAC+TGG + tig0021270:97418-97437 Msa1389400:intron 30.0%
! TGTGTGATTGACTATGTTTT+TGG + tig0021270:98216-98235 Msa1389400:intron 30.0%
ACAAATGCAATCATTCAACA+AGG - tig0021270:98314-98333 None:intergenic 30.0%
! TGTGTGATTGACTATGTTTT+TGG + tig0021270:98216-98235 Msa1389400:intron 30.0%
ACAAATGCAATCATTCAACA+AGG - tig0021270:98314-98333 None:intergenic 30.0%
! TATTCTGAGTGTGACATTTT+TGG - tig0021270:99065-99084 None:intergenic 30.0%
GCCACAGATTCAATAAATAA+AGG - tig0021270:99314-99333 None:intergenic 30.0%
!! AACTTGTTGATGCTTCAATA+TGG - tig0021270:99434-99453 None:intergenic 30.0%
TGAATGCTTGGATATCTATT+AGG - tig0021270:99494-99513 None:intergenic 30.0%
TCTATTATGCATTTGACACA+CGG + tig0021270:100187-100206 Msa1389400:intron 30.0%
TCGTTTGTCAGATAAAAATG+TGG + tig0021270:100324-100343 Msa1389400:intron 30.0%
CAGAAGTAATGTAAAAGGTA+AGG + tig0021270:100443-100462 Msa1389400:three_prime_UTR 30.0%
TAATGTAAAAGGTAAGGTGA+CGG + tig0021270:100449-100468 Msa1389400:three_prime_UTR 30.0%
GAAACAATGTTTACCTGTAT+AGG - tig0021270:100754-100773 None:intergenic 30.0%
! TTTTGTGTTTAAGCAAAGAC+TGG + tig0021270:100885-100904 Msa1389400:intron 30.0%
GGATATTCAAATGCAAGAAA+TGG + tig0021270:101536-101555 Msa1389400:three_prime_UTR 30.0%
ATTCAAATGCAAGAAATGGA+CGG + tig0021270:101540-101559 Msa1389400:three_prime_UTR 30.0%
!! TATGAAGAGTGTTTGAAATG+TGG + tig0021270:102080-102099 Msa1389400:three_prime_UTR 30.0%
!! ATGAAGAGTGTTTGAAATGT+GGG + tig0021270:102081-102100 Msa1389400:three_prime_UTR 30.0%
! TTATGTCTCAAAACCTTTTG+AGG + tig0021270:102112-102131 Msa1389400:three_prime_UTR 30.0%
! TGTATTAGTTAGTATCGAAC+TGG + tig0021270:102198-102217 Msa1389400:intron 30.0%
AAGAAAGAGAAAAGTGACAA+AGG - tig0021270:102251-102270 None:intergenic 30.0%
TAATAAGCTCTTCTGTTGTT+GGG - tig0021270:102731-102750 None:intergenic 30.0%
TTAATAAGCTCTTCTGTTGT+TGG - tig0021270:102732-102751 None:intergenic 30.0%
TATGAGTAATTAGAGGATGA+AGG + tig0021270:102826-102845 Msa1389400:intron 30.0%
!! AGAAAACTGTTTCTGTTACA+AGG + tig0021270:102967-102986 Msa1389400:intron 30.0%
!! TGATGTTTCGTTTTTATGTC+TGG + tig0021270:103019-103038 Msa1389400:intron 30.0%
!! TTGACATTTTTATTGGTGTC+AGG + tig0021270:103182-103201 Msa1389400:intron 30.0%
!!! TGACATTTTTATTGGTGTCA+GGG + tig0021270:103183-103202 Msa1389400:intron 30.0%
!! ACTTTTAACCGACTTTTTGA+TGG + tig0021270:103224-103243 Msa1389400:three_prime_UTR 30.0%
!! ATTTATTGACTCCAACTTTC+AGG - tig0021270:103412-103431 None:intergenic 30.0%
! AATAAATTTATCGGGCCTTT+TGG + tig0021270:103429-103448 Msa1389400:three_prime_UTR 30.0%
!!! AAGACTCGTTGTTTTTCAAT+TGG + tig0021270:103530-103549 Msa1389400:three_prime_UTR 30.0%
!!! AGACTCGTTGTTTTTCAATT+GGG + tig0021270:103531-103550 Msa1389400:three_prime_UTR 30.0%
GAGTCTGAAAGGAGATTAAA+CGG - tig0021270:96429-96448 None:intergenic 35.0%
TTGTGTCTGAAAAATCGCAA+TGG - tig0021270:96457-96476 None:intergenic 35.0%
GAGAAAAAACGAGCTTCAAT+CGG - tig0021270:96615-96634 None:intergenic 35.0%
TGCTTCGAAAACTCTTGATT+AGG + tig0021270:96681-96700 Msa1389400:intron 35.0%
GCTTCGAAAACTCTTGATTA+GGG + tig0021270:96682-96701 Msa1389400:intron 35.0%
GTTTATACTCTCAAACCCTA+AGG + tig0021270:96704-96723 Msa1389400:intron 35.0%
ATATAGACTGATACACGGAT+AGG - tig0021270:97307-97326 None:intergenic 35.0%
TATCCGTGTATCAGTCTATA+TGG + tig0021270:97306-97325 Msa1389400:intron 35.0%
TATGGTTTAATCAGTCTGCA+GGG - tig0021270:97533-97552 None:intergenic 35.0%
CTACCAAAGGAAATAAGGTA+TGG - tig0021270:97652-97671 None:intergenic 35.0%
GAAGCATGACATTATTGACA+TGG - tig0021270:97915-97934 None:intergenic 35.0%
! GTTTTCATGAGCTATCTTGA+TGG + tig0021270:98246-98265 Msa1389400:intron 35.0%
! TGTGCTACTGCTATATATCT+AGG - tig0021270:98433-98452 None:intergenic 35.0%
! TTCTGAGTGTGACACATTTT+TGG - tig0021270:98466-98485 None:intergenic 35.0%
! ATTTAATGGACCACACACTA+TGG + tig0021270:98524-98543 Msa1389400:intron 35.0%
ACACTATGGTATGATAGAGT+TGG + tig0021270:98538-98557 Msa1389400:intron 35.0%
! CTTATAGAAAGTGTGGAAAC+TGG + tig0021270:98675-98694 Msa1389400:intron 35.0%
! GTTTTCATGAGCTATCTTGA+TGG + tig0021270:98246-98265 Msa1389400:intron 35.0%
! TGTGCTACTGCTATATATCT+AGG - tig0021270:98433-98452 None:intergenic 35.0%
! ATTTAATGGACCACACACTA+TGG + tig0021270:98524-98543 Msa1389400:intron 35.0%
ACACTATGGTATGATAGAGT+TGG + tig0021270:98538-98557 Msa1389400:intron 35.0%
CTAATCCTATTTGATCTCCT+GGG - tig0021270:99533-99552 None:intergenic 35.0%
TCTAATCCTATTTGATCTCC+TGG - tig0021270:99534-99553 None:intergenic 35.0%
GAGAAGGTCCAAAAGAATTA+GGG + tig0021270:99670-99689 Msa1389400:CDS 35.0%
! AACAATGGCCCTAATTCTTT+TGG - tig0021270:99681-99700 None:intergenic 35.0%
GAGAAGGTCCAAAAGAATTA+GGG + tig0021270:99670-99689 Msa1389400:CDS 35.0%
GAGAAGGTCAAAAAGAATCA+GGG + tig0021270:100024-100043 Msa1389400:CDS 35.0%
AAAAATGTGGAGAAACAAGC+TGG + tig0021270:100337-100356 Msa1389400:CDS 35.0%
AGCTGGAGATATCAAGAAAT+TGG + tig0021270:100354-100373 Msa1389400:CDS 35.0%
GAGTGCAGAAGTAATGTAAA+AGG + tig0021270:100438-100457 Msa1389400:three_prime_UTR 35.0%
AATCTAGTCCAGAAAGAGAA+AGG + tig0021270:100660-100679 Msa1389400:three_prime_UTR 35.0%
CCTGTATAGGAAAGAGATAA+TGG - tig0021270:100741-100760 None:intergenic 35.0%
CCATTATCTCTTTCCTATAC+AGG + tig0021270:100738-100757 Msa1389400:three_prime_UTR 35.0%
TAACAACCCTCTTACTCATT+GGG + tig0021270:100776-100795 Msa1389400:intron 35.0%
AAAGAACCCAATGAGTAAGA+GGG - tig0021270:100785-100804 None:intergenic 35.0%
! AAATATTGGCTGTTGAGAGA+AGG + tig0021270:100965-100984 Msa1389400:intron 35.0%
! AATATTGGCTGTTGAGAGAA+GGG + tig0021270:100966-100985 Msa1389400:intron 35.0%
CAAGCTTATGTCTCAAAAGA+TGG - tig0021270:101025-101044 None:intergenic 35.0%
CCAAACATGATGAATGATTG+AGG - tig0021270:101176-101195 None:intergenic 35.0%
CCTCAATCATTCATCATGTT+TGG + tig0021270:101173-101192 Msa1389400:intron 35.0%
CACTGTATCACTAAAACATG+CGG - tig0021270:101246-101265 None:intergenic 35.0%
! AAATTTTCATTCCGCACAGA+AGG - tig0021270:101385-101404 None:intergenic 35.0%
! GTGCGGAATGAAAATTTTAG+TGG + tig0021270:101388-101407 Msa1389400:three_prime_UTR 35.0%
TTCAAATGCAAGAAATGGAC+GGG + tig0021270:101541-101560 Msa1389400:three_prime_UTR 35.0%
TTGAAGCAACTCTTCGAATT+CGG + tig0021270:101949-101968 Msa1389400:three_prime_UTR 35.0%
CTAATGGTGAATGTAGTGAA+AGG + tig0021270:102000-102019 Msa1389400:three_prime_UTR 35.0%
TCATCGCCAATATAGCTAAA+TGG - tig0021270:102037-102056 None:intergenic 35.0%
AACACTCTTCATATGTAGCA+TGG - tig0021270:102073-102092 None:intergenic 35.0%
TGAACAATTCCTTCCTCAAA+AGG - tig0021270:102128-102147 None:intergenic 35.0%
!! TTTTGAGGAAGGAATTGTTC+AGG + tig0021270:102127-102146 Msa1389400:three_prime_UTR 35.0%
! ATTAGTTAGTATCGAACTGG+TGG + tig0021270:102201-102220 Msa1389400:intron 35.0%
! TCTTGTTTCCTAAGACTCTT+AGG + tig0021270:102416-102435 Msa1389400:intron 35.0%
!!! TAAGAGGTTTTGGTTTGGTT+TGG + tig0021270:102440-102459 Msa1389400:intron 35.0%
TGCTGTAATGATACTGTACT+TGG + tig0021270:102482-102501 Msa1389400:intron 35.0%
! TCTCAGATACTTTTATCTGC+TGG - tig0021270:102537-102556 None:intergenic 35.0%
GGGAGCTTAAATTTGTAAAC+AGG - tig0021270:102702-102721 None:intergenic 35.0%
AGCTGAAACGTAGTGAAATA+AGG - tig0021270:102773-102792 None:intergenic 35.0%
! AACACTAATAGTGGCATTGA+CGG - tig0021270:102919-102938 None:intergenic 35.0%
! TGTGTCGATAACACTAATAG+TGG - tig0021270:102928-102947 None:intergenic 35.0%
TCTGTTACAAGGCTTGTATT+TGG + tig0021270:102978-102997 Msa1389400:intron 35.0%
!! ATTGTTTTATCTATCCCCTG+CGG + tig0021270:103071-103090 Msa1389400:intron 35.0%
TACAGTCCTTGATTTCTTGA+AGG + tig0021270:103148-103167 Msa1389400:intron 35.0%
ACAGTCCTTGATTTCTTGAA+GGG + tig0021270:103149-103168 Msa1389400:intron 35.0%
AGTTACCCTTCAAGAAATCA+AGG - tig0021270:103157-103176 None:intergenic 35.0%
CTTACAAGCCATCAAAAAGT+CGG - tig0021270:103235-103254 None:intergenic 35.0%
TCTGAAAATATCACGCCAAA+AGG - tig0021270:103447-103466 None:intergenic 35.0%
!!! GACTCGTTGTTTTTCAATTG+GGG + tig0021270:103532-103551 Msa1389400:three_prime_UTR 35.0%
CAATGGAGAAAGAGTCTGAA+AGG - tig0021270:96440-96459 None:intergenic 40.0%
CAGAGAAGAGAGCTAAAGAT+CGG - tig0021270:96552-96571 None:intergenic 40.0%
!! TAGTCGTTTTCTCTCTCACA+AGG + tig0021270:96649-96668 Msa1389400:five_prime_UTR 40.0%
!!! AGGGCCTGTTTTGTTTTGAT+TGG + tig0021270:96953-96972 Msa1389400:intron 40.0%
GAAGCTATTCGAGAAGAAGA+GGG + tig0021270:97104-97123 Msa1389400:intron 40.0%
ATTTGACCAGATTCGACAAG+TGG + tig0021270:97127-97146 Msa1389400:five_prime_UTR 40.0%
CTCTGAATCTGAACAGTCTT+AGG - tig0021270:97153-97172 None:intergenic 40.0%
CTAAGACTGTTCAGATTCAG+AGG + tig0021270:97151-97170 Msa1389400:five_prime_UTR 40.0%
TTCAGATTCAGAGGAAGAAG+AGG + tig0021270:97160-97179 Msa1389400:five_prime_UTR 40.0%
!!! AGAAGAGGATTTTGAAGCAG+AGG + tig0021270:97175-97194 Msa1389400:five_prime_UTR 40.0%
!!! GATTTTGAAGCAGAGGTTGA+AGG + tig0021270:97182-97201 Msa1389400:five_prime_UTR 40.0%
! CCAAATTTCTAGACAGCTCA+AGG - tig0021270:97245-97264 None:intergenic 40.0%
CCTTGAGCTGTCTAGAAATT+TGG + tig0021270:97242-97261 Msa1389400:intron 40.0%
GCTGTCTAGAAATTTGGATG+TGG + tig0021270:97248-97267 Msa1389400:intron 40.0%
GTATGGTTTAATCAGTCTGC+AGG - tig0021270:97534-97553 None:intergenic 40.0%
AATGGTTTGATCAGTCTGCA+GGG - tig0021270:98191-98210 None:intergenic 40.0%
AAATGGTTTGATCAGTCTGC+AGG - tig0021270:98192-98211 None:intergenic 40.0%
! TGAGCTATCTTGATGGATGT+AGG + tig0021270:98253-98272 Msa1389400:intron 40.0%
! GAGCTATCTTGATGGATGTA+GGG + tig0021270:98254-98273 Msa1389400:intron 40.0%
! ATCTTGATGGATGTAGGGAA+AGG + tig0021270:98259-98278 Msa1389400:intron 40.0%
CTCTATCATACCATAGTGTG+TGG - tig0021270:98537-98556 None:intergenic 40.0%
!! TAGAGTTGGTGTGTGAATGT+AGG + tig0021270:98552-98571 Msa1389400:intron 40.0%
AATGGTTTGATCAGTCTGCA+GGG - tig0021270:98191-98210 None:intergenic 40.0%
AAATGGTTTGATCAGTCTGC+AGG - tig0021270:98192-98211 None:intergenic 40.0%
! TGAGCTATCTTGATGGATGT+AGG + tig0021270:98253-98272 Msa1389400:intron 40.0%
! GAGCTATCTTGATGGATGTA+GGG + tig0021270:98254-98273 Msa1389400:intron 40.0%
! ATCTTGATGGATGTAGGGAA+AGG + tig0021270:98259-98278 Msa1389400:intron 40.0%
CTCTATCATACCATAGTGTG+TGG - tig0021270:98537-98556 None:intergenic 40.0%
!! TAGAGTTGGTGTGTGAATGT+AGG + tig0021270:98552-98571 Msa1389400:intron 40.0%
! AACACTACCTTTTCAGCTGA+AGG + tig0021270:99398-99417 Msa1389400:intron 40.0%
ACTTGAACCTTCAGCTGAAA+AGG - tig0021270:99408-99427 None:intergenic 40.0%
ATGGTCTCAGCGAAAAAGAA+AGG - tig0021270:99470-99489 None:intergenic 40.0%
GCTTGGATATCTATTAGGCA+TGG - tig0021270:99489-99508 None:intergenic 40.0%
CCAATCGGATATTGAATGCT+TGG - tig0021270:99506-99525 None:intergenic 40.0%
CCAAGCATTCAATATCCGAT+TGG + tig0021270:99503-99522 Msa1389400:CDS 40.0%
AATATCCGATTGGAAAACCC+AGG + tig0021270:99513-99532 Msa1389400:CDS 40.0%
GAAAACCCAGGAGATCAAAT+AGG + tig0021270:99525-99544 Msa1389400:CDS 40.0%
ACCACCACCTACTACAATAT+CGG - tig0021270:99642-99661 None:intergenic 40.0%
! ATATTGTAGTAGGTGGTGGT+GGG + tig0021270:99642-99661 Msa1389400:CDS 40.0%
GGAGAAGGTCCAAAAGAATT+AGG + tig0021270:99669-99688 Msa1389400:CDS 40.0%
ATTAGGGCCATTGTTGAAGT+TGG + tig0021270:99686-99705 Msa1389400:CDS 40.0%
!! TAGATGGTGGTGGAGAAATA+AGG + tig0021270:99729-99748 Msa1389400:CDS 40.0%
GGAGAAGGTCCAAAAGAATT+AGG + tig0021270:99669-99688 Msa1389400:CDS 40.0%
! AACCATGGCCCTAATTCTTT+TGG - tig0021270:99861-99880 None:intergenic 40.0%
GGAGAAGGTCAAAAAGAATC+AGG + tig0021270:100023-100042 Msa1389400:CDS 40.0%
GTCAAAAAGAATCAGGGCAA+TGG + tig0021270:100030-100049 Msa1389400:CDS 40.0%
GCGAGATATTAGAAAAGCTG+AGG + tig0021270:100116-100135 Msa1389400:CDS 40.0%
TGAAATGGAGCTATGAAGCA+CGG - tig0021270:100276-100295 None:intergenic 40.0%
TGCTTCATAGCTCCATTTCA+AGG + tig0021270:100276-100295 Msa1389400:intron 40.0%
! TTAGTGTGATGGCCTTGAAA+TGG - tig0021270:100291-100310 None:intergenic 40.0%
! GCTTTTACCTATATCAGGTG+TGG - tig0021270:100475-100494 None:intergenic 40.0%
AGACGAATCAACTACCAATC+TGG + tig0021270:100692-100711 Msa1389400:three_prime_UTR 40.0%
GAACACAGTTGAAACCAGAT+TGG - tig0021270:100709-100728 None:intergenic 40.0%
CTAACAACCCTCTTACTCAT+TGG + tig0021270:100775-100794 Msa1389400:intron 40.0%
CAAAGAACCCAATGAGTAAG+AGG - tig0021270:100786-100805 None:intergenic 40.0%
GAGTACTAATCATGCTCTCT+AGG - tig0021270:100918-100937 None:intergenic 40.0%
CAAACTGAAGTTGAACCATC+AGG - tig0021270:101359-101378 None:intergenic 40.0%
! ATCCGCTCCAAAGTTTTTCA+AGG - tig0021270:101442-101461 None:intergenic 40.0%
AGCAAGCATCAAACTTGTGA+GGG - tig0021270:101512-101531 None:intergenic 40.0%
AAGCAAGCATCAAACTTGTG+AGG - tig0021270:101513-101532 None:intergenic 40.0%
CAAGTTTGATGCTTGCTTCA+AGG + tig0021270:101515-101534 Msa1389400:three_prime_UTR 40.0%
TTACGTGCATTCAACTTACG+TGG - tig0021270:101718-101737 None:intergenic 40.0%
! AATGCACGTAACTTGCATGT+TGG + tig0021270:101727-101746 Msa1389400:intron 40.0%
TGAAGCAACTCTTCGAATTC+GGG + tig0021270:101950-101969 Msa1389400:three_prime_UTR 40.0%
! AGAGTGTTTGAAATGTGGGA+TGG + tig0021270:102085-102104 Msa1389400:three_prime_UTR 40.0%
!! GTCTCAAAACCTTTTGAGGA+AGG + tig0021270:102116-102135 Msa1389400:three_prime_UTR 40.0%
CCAAGCATGATGAATGATTG+AGG - tig0021270:102376-102395 None:intergenic 40.0%
CCTCAATCATTCATCATGCT+TGG + tig0021270:102373-102392 Msa1389400:intron 40.0%
! ACTCTTAGGCTAAGAGGTTT+TGG + tig0021270:102430-102449 Msa1389400:intron 40.0%
!!! TAGGCTAAGAGGTTTTGGTT+TGG + tig0021270:102435-102454 Msa1389400:intron 40.0%
AAAGTTAGAGCTAGAGCTAC+TGG + tig0021270:102609-102628 Msa1389400:intron 40.0%
AAGTTAGAGCTAGAGCTACT+GGG + tig0021270:102610-102629 Msa1389400:intron 40.0%
GAGAACCCAACAACCTAATT+GGG - tig0021270:102653-102672 None:intergenic 40.0%
TGAGAACCCAACAACCTAAT+TGG - tig0021270:102654-102673 None:intergenic 40.0%
TTGTTGGGTTCTCATCATCT+CGG + tig0021270:102660-102679 Msa1389400:intron 40.0%
AGCTTATTAAAGCGACTGCA+GGG + tig0021270:102742-102761 Msa1389400:intron 40.0%
!! TTTTGATGGCTTGTAAGACC+TGG + tig0021270:103238-103257 Msa1389400:three_prime_UTR 40.0%
AATGCGGACTTTAGCACATA+CGG + tig0021270:103293-103312 Msa1389400:three_prime_UTR 40.0%
GCATGACGACTTGAATTTCA+TGG + tig0021270:103345-103364 Msa1389400:three_prime_UTR 40.0%
!! TTGACTCCAACTTTCAGGTT+GGG - tig0021270:103407-103426 None:intergenic 40.0%
! ATTGACTCCAACTTTCAGGT+TGG - tig0021270:103408-103427 None:intergenic 40.0%
CAAGCGCGAGACTAATATTT+GGG + tig0021270:103471-103490 Msa1389400:three_prime_UTR 40.0%
GTGAATAAACACGCTCTTTG+TGG + tig0021270:103668-103687 Msa1389400:three_prime_UTR 40.0%
GAAGAGCGGAAAAATCGCAA+TGG - tig0021270:96487-96506 None:intergenic 45.0%
TCCGATCTGATGCTCGAAAA+TGG + tig0021270:96505-96524 Msa1389400:five_prime_UTR 45.0%
!! GCCATTTTCGAGCATCAGAT+CGG - tig0021270:96509-96528 None:intergenic 45.0%
ATGGCAATTGAAGCTCGTTG+AGG + tig0021270:96524-96543 Msa1389400:five_prime_UTR 45.0%
TTGCTATCTCAGGTCCTGTT+TGG + tig0021270:96851-96870 Msa1389400:intron 45.0%
GGAAGCTATTCGAGAAGAAG+AGG + tig0021270:97103-97122 Msa1389400:intron 45.0%
! ATGTAGGGAAAGGCATACAG+TGG + tig0021270:98269-98288 Msa1389400:intron 45.0%
! ATGTAGGGAAAGGCATACAG+TGG + tig0021270:98269-98288 Msa1389400:intron 45.0%
TTATAGAGGGAATCACGCGT+GGG - tig0021270:99339-99358 None:intergenic 45.0%
TTTATAGAGGGAATCACGCG+TGG - tig0021270:99340-99359 None:intergenic 45.0%
! GATCTCCTGGGTTTTCCAAT+CGG - tig0021270:99521-99540 None:intergenic 45.0%
AGGATTAGAGTTCGATGCGA+TGG + tig0021270:99545-99564 Msa1389400:CDS 45.0%
!! ATGACGGATGGTGTTGAAGT+TGG + tig0021270:99575-99594 Msa1389400:CDS 45.0%
AGGAGGACCGATATTGTAGT+AGG + tig0021270:99632-99651 Msa1389400:CDS 45.0%
AGGACCGATATTGTAGTAGG+TGG + tig0021270:99635-99654 Msa1389400:CDS 45.0%
ACCGATATTGTAGTAGGTGG+TGG + tig0021270:99638-99657 Msa1389400:CDS 45.0%
! GATATTGTAGTAGGTGGTGG+TGG + tig0021270:99641-99660 Msa1389400:CDS 45.0%
! TATTGTAGTAGGTGGTGGTG+GGG + tig0021270:99643-99662 Msa1389400:CDS 45.0%
!! TGGTGGTGGAGAAATAAGGA+TGG + tig0021270:99733-99752 Msa1389400:CDS 45.0%
GGTGGAGAAATAAGGATGGA+TGG + tig0021270:99737-99756 Msa1389400:CDS 45.0%
! AGGATGGATGGTGTTGAAGT+TGG + tig0021270:99749-99768 Msa1389400:CDS 45.0%
! ATGGATGGTGTTGAAGTTGG+CGG + tig0021270:99752-99771 Msa1389400:CDS 45.0%
AGGAGGACAGATGGTGTAAT+AGG + tig0021270:99812-99831 Msa1389400:CDS 45.0%
AGGACAGATGGTGTAATAGG+TGG + tig0021270:99815-99834 Msa1389400:CDS 45.0%
ACAGATGGTGTAATAGGTGG+TGG + tig0021270:99818-99837 Msa1389400:CDS 45.0%
! ATGGTGTAATAGGTGGTGGT+GGG + tig0021270:99822-99841 Msa1389400:CDS 45.0%
GTCCAAAAGAATTAGGGCCA+TGG + tig0021270:99676-99695 Msa1389400:CDS 45.0%
ATTAGGGCCATGGTTGAAGT+TGG + tig0021270:99866-99885 Msa1389400:CDS 45.0%
!! TAGATGGTGGTGGAGAAATG+AGG + tig0021270:99909-99928 Msa1389400:CDS 45.0%
! AGGATGGATGGTGTTGAAGT+TGG + tig0021270:99749-99768 Msa1389400:CDS 45.0%
! ATGGATGGTGTTGAAGTTGG+CGG + tig0021270:99752-99771 Msa1389400:CDS 45.0%
ACCACCATCTACAACTCCAT+CGG - tig0021270:99996-100015 None:intergenic 45.0%
ATGCATTTGACACACGGACA+CGG + tig0021270:100193-100212 Msa1389400:intron 45.0%
TGTGTCTGACACGACACTTA+TGG - tig0021270:100226-100245 None:intergenic 45.0%
AATCGATCGGAGAGTTCTAC+CGG - tig0021270:100547-100566 None:intergenic 45.0%
GATCTGCACCTTTCTCTTTC+TGG - tig0021270:100671-100690 None:intergenic 45.0%
GAAGCCACTGAGAACTAGTA+TGG + tig0021270:101271-101290 Msa1389400:three_prime_UTR 45.0%
CCACTGAGAACTAGTATGGT+GGG + tig0021270:101275-101294 Msa1389400:three_prime_UTR 45.0%
! AGCTTGCCTTCAGCAAGTTT+TGG + tig0021270:101298-101317 Msa1389400:three_prime_UTR 45.0%
! GCTTGCCTTCAGCAAGTTTT+GGG + tig0021270:101299-101318 Msa1389400:three_prime_UTR 45.0%
!! CTGTTCCCAAAACTTGCTGA+AGG - tig0021270:101307-101326 None:intergenic 45.0%
!!! CTTCAGCAAGTTTTGGGAAC+AGG + tig0021270:101305-101324 Msa1389400:three_prime_UTR 45.0%
! TCAGTTTGAAGCCTTCTGTG+CGG + tig0021270:101371-101390 Msa1389400:three_prime_UTR 45.0%
! CGCCTTGAAAAACTTTGGAG+CGG + tig0021270:101437-101456 Msa1389400:three_prime_UTR 45.0%
AACTCTTCGAATTCGGGAGA+TGG + tig0021270:101956-101975 Msa1389400:three_prime_UTR 45.0%
CCTCTTAGCCTAAGAGTCTT+AGG - tig0021270:102427-102446 None:intergenic 45.0%
CCTAAGACTCTTAGGCTAAG+AGG + tig0021270:102424-102443 Msa1389400:intron 45.0%
AACAACCTAATTGGGCCAGT+CGG - tig0021270:102645-102664 None:intergenic 45.0%
! ACTGGCCCAATTAGGTTGTT+GGG + tig0021270:102645-102664 Msa1389400:intron 45.0%
AGCTCTTCTGTTGTTGGGTT+GGG - tig0021270:102726-102745 None:intergenic 45.0%
AAGCTCTTCTGTTGTTGGGT+TGG - tig0021270:102727-102746 None:intergenic 45.0%
GAGCTTATTAAAGCGACTGC+AGG + tig0021270:102741-102760 Msa1389400:intron 45.0%
AGAAGACAATGCAAACCGCA+GGG - tig0021270:103089-103108 None:intergenic 45.0%
TGTCAGGGAAACATTGCTGA+AGG + tig0021270:103198-103217 Msa1389400:intron 45.0%
CTGGATTGCTCAGCTGAATT+GGG + tig0021270:103257-103276 Msa1389400:three_prime_UTR 45.0%
TCAGCTGAATTGGGATCTGT+TGG + tig0021270:103266-103285 Msa1389400:three_prime_UTR 45.0%
ATGTGCTAAAGTCCGCATTC+TGG - tig0021270:103292-103311 None:intergenic 45.0%
ATGCGGACTTTAGCACATAC+GGG + tig0021270:103294-103313 Msa1389400:three_prime_UTR 45.0%
GCTTCTACGGGTAATGTTGT+GGG + tig0021270:103322-103341 Msa1389400:three_prime_UTR 45.0%
CTTCTACGGGTAATGTTGTG+GGG + tig0021270:103323-103342 Msa1389400:three_prime_UTR 45.0%
! CCAAATATTAGTCTCGCGCT+TGG - tig0021270:103473-103492 None:intergenic 45.0%
CCAAGCGCGAGACTAATATT+TGG + tig0021270:103470-103489 Msa1389400:three_prime_UTR 45.0%
CTTAGGCCACTTGTCGAATC+TGG - tig0021270:97136-97155 None:intergenic 50.0%
ATGCGATGGCGAAAGGATGA+CGG + tig0021270:99559-99578 Msa1389400:CDS 50.0%
! ACGGATGGTGTTGAAGTTGG+CGG + tig0021270:99578-99597 Msa1389400:CDS 50.0%
AGGGCCATTGTTGAAGTTGG+TGG + tig0021270:99689-99708 Msa1389400:CDS 50.0%
!! GCCATTGTTGAAGTTGGTGG+CGG + tig0021270:99692-99711 Msa1389400:CDS 50.0%
ACCGCCACCAACTTCAACAA+TGG - tig0021270:99696-99715 None:intergenic 50.0%
!! ATTGTTGAAGTTGGTGGCGG+TGG + tig0021270:99695-99714 Msa1389400:CDS 50.0%
! AATGAGGCTGTAGATGGTGG+TGG + tig0021270:99719-99738 Msa1389400:CDS 50.0%
! GATGGTGTAATAGGTGGTGG+TGG + tig0021270:99821-99840 Msa1389400:CDS 50.0%
! TGGTGTAATAGGTGGTGGTG+GGG + tig0021270:99823-99842 Msa1389400:CDS 50.0%
!! TAATAGGTGGTGGTGGGGAA+AGG + tig0021270:99828-99847 Msa1389400:CDS 50.0%
! AATGAGGCTGTAGATGGTGG+TGG + tig0021270:99719-99738 Msa1389400:CDS 50.0%
!! TGGTGGTGGAGAAATGAGGA+TGG + tig0021270:99913-99932 Msa1389400:CDS 50.0%
GGTGGAGAAATGAGGATGGA+TGG + tig0021270:99917-99936 Msa1389400:CDS 50.0%
AGGACCGATGGAGTTGTAGA+TGG + tig0021270:99989-100008 Msa1389400:CDS 50.0%
ACCGATGGAGTTGTAGATGG+TGG + tig0021270:99992-100011 Msa1389400:CDS 50.0%
! GATGGAGTTGTAGATGGTGG+TGG + tig0021270:99995-100014 Msa1389400:CDS 50.0%
!! TTGTAGATGGTGGTGGCGAA+AGG + tig0021270:100002-100021 Msa1389400:CDS 50.0%
ATCAGGGCAATGGATGACGT+TGG + tig0021270:100040-100059 Msa1389400:CDS 50.0%
GGAGATGTACATGGTGGTTG+TGG + tig0021270:100094-100113 Msa1389400:CDS 50.0%
! AAGTGTCGTGTCAGACACAC+CGG + tig0021270:100227-100246 Msa1389400:intron 50.0%
TATGAAGCACGGACACTCCT+CGG - tig0021270:100265-100284 None:intergenic 50.0%
! GCGCGGCTTTTACCTATATC+AGG - tig0021270:100480-100499 None:intergenic 50.0%
CGAGGACATCACGGATTTAG+CGG - tig0021270:100510-100529 None:intergenic 50.0%
GCCACTGAGAACTAGTATGG+TGG + tig0021270:101274-101293 Msa1389400:three_prime_UTR 50.0%
! CCCACCATACTAGTTCTCAG+TGG - tig0021270:101278-101297 None:intergenic 50.0%
AACAGGCAAGAAGAGACAGC+CGG + tig0021270:101322-101341 Msa1389400:three_prime_UTR 50.0%
! CCATCAGGCATCTCTTTTCC+CGG - tig0021270:101344-101363 None:intergenic 50.0%
GCAGGCGCCTTGAAAAACTT+TGG + tig0021270:101432-101451 Msa1389400:three_prime_UTR 50.0%
GATGTGAAGTGTGCAGACAG+CGG + tig0021270:101459-101478 Msa1389400:three_prime_UTR 50.0%
TTCGAATTCGGGAGATGGAG+AGG + tig0021270:101961-101980 Msa1389400:three_prime_UTR 50.0%
AATTCGGGAGATGGAGAGGA+CGG + tig0021270:101965-101984 Msa1389400:three_prime_UTR 50.0%
ACGGCGAATGAGGAGACTAA+TGG + tig0021270:101984-102003 Msa1389400:three_prime_UTR 50.0%
TGAGAGAGAGAGAGAGAGAG+AGG + tig0021270:102324-102343 Msa1389400:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + tig0021270:102325-102344 Msa1389400:intron 50.0%
ACTGGGAAAGTTGTTCCGAC+TGG + tig0021270:102627-102646 Msa1389400:intron 50.0%
! TTGTTCCGACTGGCCCAATT+AGG + tig0021270:102637-102656 Msa1389400:intron 50.0%
! GACTGGCCCAATTAGGTTGT+TGG + tig0021270:102644-102663 Msa1389400:intron 50.0%
!! CTTCTGTTGTTGGGTTGGGA+GGG - tig0021270:102722-102741 None:intergenic 50.0%
!! TCTTCTGTTGTTGGGTTGGG+AGG - tig0021270:102723-102742 None:intergenic 50.0%
GAAGACAATGCAAACCGCAG+GGG - tig0021270:103088-103107 None:intergenic 50.0%
GAGAAGACAATGCAAACCGC+AGG - tig0021270:103090-103109 None:intergenic 50.0%
CCAATTCAGCTGAGCAATCC+AGG - tig0021270:103259-103278 None:intergenic 50.0%
CCTGGATTGCTCAGCTGAAT+TGG + tig0021270:103256-103275 Msa1389400:three_prime_UTR 50.0%
TGCGGACTTTAGCACATACG+GGG + tig0021270:103295-103314 Msa1389400:three_prime_UTR 50.0%
ACTTTAGCACATACGGGGAC+TGG + tig0021270:103300-103319 Msa1389400:three_prime_UTR 50.0%
GGCTTCTACGGGTAATGTTG+TGG + tig0021270:103321-103340 Msa1389400:three_prime_UTR 50.0%
ATCTAGACTCCGACACGTTC+CGG + tig0021270:103377-103396 Msa1389400:three_prime_UTR 50.0%
!! AACTTTCAGGTTGGGTCTGC+CGG - tig0021270:103399-103418 None:intergenic 50.0%
ACTATTGCTGCTGTGCTCGT+TGG + tig0021270:103495-103514 Msa1389400:three_prime_UTR 50.0%
CGAGCATCAGATCGGAAGAG+CGG - tig0021270:96501-96520 None:intergenic 55.0%
GAGTTCGATGCGATGGCGAA+AGG + tig0021270:99552-99571 Msa1389400:CDS 55.0%
!! GATGGCGAAAGGATGACGGA+TGG + tig0021270:99563-99582 Msa1389400:CDS 55.0%
! GATGGTGTTGAAGTTGGCGG+TGG + tig0021270:99581-99600 Msa1389400:CDS 55.0%
!! TAGTAGGTGGTGGTGGGGAA+AGG + tig0021270:99648-99667 Msa1389400:CDS 55.0%
GGTGGCAATGAGGCTGTAGA+TGG + tig0021270:99713-99732 Msa1389400:CDS 55.0%
GGCAATGAGGCTGTAGATGG+TGG + tig0021270:99716-99735 Msa1389400:CDS 55.0%
! GATGGTGTTGAAGTTGGCGG+TGG + tig0021270:99581-99600 Msa1389400:CDS 55.0%
AGGGCCATGGTTGAAGTTGG+TGG + tig0021270:99869-99888 Msa1389400:CDS 55.0%
!! GCCATGGTTGAAGTTGGTGG+CGG + tig0021270:99872-99891 Msa1389400:CDS 55.0%
ACCGCCACCAACTTCAACCA+TGG - tig0021270:99876-99895 None:intergenic 55.0%
!! ATGGTTGAAGTTGGTGGCGG+TGG + tig0021270:99875-99894 Msa1389400:CDS 55.0%
GGTGGCAATGAGGCTGTAGA+TGG + tig0021270:99713-99732 Msa1389400:CDS 55.0%
GGCAATGAGGCTGTAGATGG+TGG + tig0021270:99716-99735 Msa1389400:CDS 55.0%
! GATGGTGTTGAAGTTGGCGG+TGG + tig0021270:99581-99600 Msa1389400:CDS 55.0%
!! ATGGTGGTGGCGAAAGGAGA+AGG + tig0021270:100008-100027 Msa1389400:CDS 55.0%
AGGGCAATGGATGACGTTGG+TGG + tig0021270:100043-100062 Msa1389400:CDS 55.0%
!! ATGGATGACGTTGGTGGCGA+TGG + tig0021270:100049-100068 Msa1389400:CDS 55.0%
GGTGGCGATGGAGATGTACA+TGG + tig0021270:100085-100104 Msa1389400:CDS 55.0%
GGCGATGGAGATGTACATGG+TGG + tig0021270:100088-100107 Msa1389400:CDS 55.0%
AGTGTCGTGTCAGACACACC+GGG + tig0021270:100228-100247 Msa1389400:intron 55.0%
GTGACGGCCACACCTGATAT+AGG + tig0021270:100465-100484 Msa1389400:three_prime_UTR 55.0%
GATTTAGCGGAGGCTTTGCG+CGG - tig0021270:100497-100516 None:intergenic 55.0%
GGACATCACGGATTTAGCGG+AGG - tig0021270:100507-100526 None:intergenic 55.0%
CCATTGCGACGAGGACATCA+CGG - tig0021270:100519-100538 None:intergenic 55.0%
TGATGTCCTCGTCGCAATGG+CGG + tig0021270:100519-100538 Msa1389400:three_prime_UTR 55.0%
GGCTGTTGAGAGAAGGGAGA+AGG + tig0021270:100972-100991 Msa1389400:intron 55.0%
ACAGGCAAGAAGAGACAGCC+GGG + tig0021270:101323-101342 Msa1389400:three_prime_UTR 55.0%
CCGGGAAAAGAGATGCCTGA+TGG + tig0021270:101341-101360 Msa1389400:three_prime_UTR 55.0%
AGAGAGAGAGAGAGAGAGGG+AGG + tig0021270:102328-102347 Msa1389400:intron 55.0%
GAGAGAGAGAGAGAGAGGGA+GGG + tig0021270:102329-102348 Msa1389400:intron 55.0%
GGGTTCTCATCATCTCGGTG+TGG + tig0021270:102665-102684 Msa1389400:intron 55.0%
GGGATCTGTTGGCCAGAATG+CGG + tig0021270:103277-103296 Msa1389400:three_prime_UTR 55.0%
!! CATACGGGGACTGGCTTCTA+CGG + tig0021270:103309-103328 Msa1389400:three_prime_UTR 55.0%
!! ATACGGGGACTGGCTTCTAC+GGG + tig0021270:103310-103329 Msa1389400:three_prime_UTR 55.0%
GGCAGACCCAACCTGAAAGT+TGG + tig0021270:103398-103417 Msa1389400:three_prime_UTR 55.0%
!!! GCTGTGCTCGTTGGCTCTTT+TGG + tig0021270:103504-103523 Msa1389400:three_prime_UTR 55.0%
GTTGAAGTTGGCGGTGGCAC+CGG + tig0021270:99587-99606 Msa1389400:CDS 60.0%
!! CTGAAGGTGGTGGTGGCGAA+AGG + tig0021270:99612-99631 Msa1389400:CDS 60.0%
!! AAGGTGGTGGTGGCGAAAGG+AGG + tig0021270:99615-99634 Msa1389400:CDS 60.0%
!! GTGGTGGTGGGGAAAGGAGA+AGG + tig0021270:99654-99673 Msa1389400:CDS 60.0%
!! AGTTGGTGGCGGTGGCAATG+AGG + tig0021270:99703-99722 Msa1389400:CDS 60.0%
! GGTGTTGAAGTTGGCGGTGG+CGG + tig0021270:99584-99603 Msa1389400:CDS 60.0%
! ACCAGAGCTGAAGGTGGTGG+TGG + tig0021270:99785-99804 Msa1389400:CDS 60.0%
!! CTGAAGGTGGTGGTGGCGAA+AGG + tig0021270:99612-99631 Msa1389400:CDS 60.0%
!! AAGGTGGTGGTGGCGAAAGG+AGG + tig0021270:99615-99634 Msa1389400:CDS 60.0%
GGTGGCGAAAGGAGGACAGA+TGG + tig0021270:99803-99822 Msa1389400:CDS 60.0%
!! GTGGTGGTGGGGAAAGGAGA+AGG + tig0021270:99654-99673 Msa1389400:CDS 60.0%
!! AGTTGGTGGCGGTGGCAATG+AGG + tig0021270:99703-99722 Msa1389400:CDS 60.0%
GTTGAAGTTGGCGGTGGCAC+CGG + tig0021270:99587-99606 Msa1389400:CDS 60.0%
!! CTGAAGGTGGTGGAGGGGAA+AGG + tig0021270:99966-99985 Msa1389400:CDS 60.0%
!! AAGGTGGTGGAGGGGAAAGG+AGG + tig0021270:99969-99988 Msa1389400:CDS 60.0%
!! GATGACGTTGGTGGCGATGG+CGG + tig0021270:100052-100071 Msa1389400:CDS 60.0%
! ACGGACACTCCTCGGATTGG+GGG - tig0021270:100257-100276 None:intergenic 60.0%
CACGGACACTCCTCGGATTG+GGG - tig0021270:100258-100277 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+GGG - tig0021270:100259-100278 None:intergenic 60.0%
AGCACGGACACTCCTCGGAT+TGG - tig0021270:100260-100279 None:intergenic 60.0%
CCGTGATGTCCTCGTCGCAA+TGG + tig0021270:100516-100535 Msa1389400:three_prime_UTR 60.0%
GATGGAGAGGACGGCGAATG+AGG + tig0021270:101974-101993 Msa1389400:three_prime_UTR 60.0%
AGAGAGAGAGAGAGGGAGGG+AGG + tig0021270:102332-102351 Msa1389400:intron 60.0%
GAGAGAGAGAGAGGGAGGGA+GGG + tig0021270:102333-102352 Msa1389400:intron 60.0%
TTGGGTCTGCCGGAACGTGT+CGG - tig0021270:103389-103408 None:intergenic 60.0%
! ACCGGAGCTGAAGGTGGTGG+TGG + tig0021270:99605-99624 Msa1389400:CDS 65.0%
GCCACCACCACCTTCAGCTC+CGG - tig0021270:99609-99628 None:intergenic 65.0%
! GTTGAAGTTGGCGGTGGCGG+TGG + tig0021270:99761-99780 Msa1389400:CDS 65.0%
GGTGGCACCAGAGCTGAAGG+TGG + tig0021270:99779-99798 Msa1389400:CDS 65.0%
GGCACCAGAGCTGAAGGTGG+TGG + tig0021270:99782-99801 Msa1389400:CDS 65.0%
GCCACCACCACCTTCAGCTC+TGG - tig0021270:99609-99628 None:intergenic 65.0%
! ACCGGAGCTGAAGGTGGTGG+AGG + tig0021270:99605-99624 Msa1389400:CDS 65.0%
CCCTCCACCACCTTCAGCTC+CGG - tig0021270:99963-99982 None:intergenic 65.0%
!! CCGGAGCTGAAGGTGGTGGA+GGG + tig0021270:99960-99979 Msa1389400:CDS 65.0%
!! CGGAGCTGAAGGTGGTGGAG+GGG + tig0021270:99961-99980 Msa1389400:CDS 65.0%
GGAGGGGAAAGGAGGACCGA+TGG + tig0021270:99977-99996 Msa1389400:CDS 65.0%
!! GTTGGTGGCGATGGCGGTTG+CGG + tig0021270:100058-100077 Msa1389400:CDS 65.0%
!! TCCTCGGATTGGGGGTGTCC+CGG - tig0021270:100249-100268 None:intergenic 65.0%
CCTCGTCGCAATGGCGGTTC+CGG + tig0021270:100525-100544 Msa1389400:three_prime_UTR 65.0%
! GGTGGCACCGGAGCTGAAGG+TGG + tig0021270:99599-99618 Msa1389400:CDS 70.0%
! GGCACCGGAGCTGAAGGTGG+TGG + tig0021270:99602-99621 Msa1389400:CDS 70.0%
GGCGGTGGCACCAGAGCTGA+AGG + tig0021270:99776-99795 Msa1389400:CDS 70.0%
! GGTGGCACCGGAGCTGAAGG+TGG + tig0021270:99599-99618 Msa1389400:CDS 70.0%
! GGCACCGGAGCTGAAGGTGG+TGG + tig0021270:99602-99621 Msa1389400:CDS 70.0%
! GATGGCGGTTGCGGTGGTGG+TGG + tig0021270:100067-100086 Msa1389400:CDS 70.0%
!! GGTTGCGGTGGTGGTGGCGA+TGG + tig0021270:100073-100092 Msa1389400:CDS 70.0%
ACCGGGACACCCCCAATCCG+AGG + tig0021270:100245-100264 Msa1389400:intron 70.0%
CCGGAACCGCCATTGCGACG+AGG - tig0021270:100528-100547 None:intergenic 70.0%
! GGCGGTGGCACCGGAGCTGA+AGG + tig0021270:99596-99615 Msa1389400:CDS 75.0%
! GGCGGTGGCACCGGAGCTGA+AGG + tig0021270:99596-99615 Msa1389400:CDS 75.0%
! GGTGGCGATGGCGGTTGCGG+TGG + tig0021270:100061-100080 Msa1389400:CDS 75.0%
! GGCGATGGCGGTTGCGGTGG+TGG + tig0021270:100064-100083 Msa1389400:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0021270 gene 96424 103696 96424 ID=Msa1389400;Name=Msa1389400
tig0021270 mRNA 96424 103696 96424 ID=Msa1389400-mRNA-1;Parent=Msa1389400;Name=Msa1389400-mRNA-1;_AED=0.23;_eAED=0.23;_QI=430|1|1|1|0.42|0.37|8|1330|252
tig0021270 exon 96424 96670 96424 ID=Msa1389400-mRNA-1:exon:11571;Parent=Msa1389400-mRNA-1
tig0021270 exon 97108 97203 97108 ID=Msa1389400-mRNA-1:exon:11572;Parent=Msa1389400-mRNA-1
tig0021270 exon 98275 98287 98275 ID=Msa1389400-mRNA-1:exon:11573;Parent=Msa1389400-mRNA-1
tig0021270 exon 99414 100157 99414 ID=Msa1389400-mRNA-1:exon:11574;Parent=Msa1389400-mRNA-1
tig0021270 exon 100335 100759 100335 ID=Msa1389400-mRNA-1:exon:11575;Parent=Msa1389400-mRNA-1
tig0021270 exon 101264 101562 101264 ID=Msa1389400-mRNA-1:exon:11576;Parent=Msa1389400-mRNA-1
tig0021270 exon 101947 102148 101947 ID=Msa1389400-mRNA-1:exon:11577;Parent=Msa1389400-mRNA-1
tig0021270 exon 103204 103696 103204 ID=Msa1389400-mRNA-1:exon:11578;Parent=Msa1389400-mRNA-1
tig0021270 five_prime_UTR 96424 96670 96424 ID=Msa1389400-mRNA-1:five_prime_utr;Parent=Msa1389400-mRNA-1
tig0021270 five_prime_UTR 97108 97203 97108 ID=Msa1389400-mRNA-1:five_prime_utr;Parent=Msa1389400-mRNA-1
tig0021270 five_prime_UTR 98275 98287 98275 ID=Msa1389400-mRNA-1:five_prime_utr;Parent=Msa1389400-mRNA-1
tig0021270 five_prime_UTR 99414 99487 99414 ID=Msa1389400-mRNA-1:five_prime_utr;Parent=Msa1389400-mRNA-1
tig0021270 CDS 99488 100157 99488 ID=Msa1389400-mRNA-1:cds;Parent=Msa1389400-mRNA-1
tig0021270 CDS 100335 100423 100335 ID=Msa1389400-mRNA-1:cds;Parent=Msa1389400-mRNA-1
tig0021270 three_prime_UTR 100424 100759 100424 ID=Msa1389400-mRNA-1:three_prime_utr;Parent=Msa1389400-mRNA-1
tig0021270 three_prime_UTR 101264 101562 101264 ID=Msa1389400-mRNA-1:three_prime_utr;Parent=Msa1389400-mRNA-1
tig0021270 three_prime_UTR 101947 102148 101947 ID=Msa1389400-mRNA-1:three_prime_utr;Parent=Msa1389400-mRNA-1
tig0021270 three_prime_UTR 103204 103696 103204 ID=Msa1389400-mRNA-1:three_prime_utr;Parent=Msa1389400-mRNA-1
Gene Sequence

>Msa1389400

ATGCCTAATAGATATCCAAGCATTCAATATCCGATTGGAAAACCCAGGAGATCAAATAGGATTAGAGTTCGATGCGATGGCGAAAGGATGACGGATGGTGTTGAAGTTGGCGGTGGCACCGGAGCTGAAGGTGGTGGTGGCGAAAGGAGGACCGATATTGTAGTAGGTGGTGGTGGGGAAAGGAGAAGGTCCAAAAGAATTAGGGCCATTGTTGAAGTTGGTGGCGGTGGCAATGAGGCTGTAGATGGTGGTGGAGAAATAAGGATGGATGGTGTTGAAGTTGGCGGTGGCGGTGGCACCAGAGCTGAAGGTGGTGGTGGCGAAAGGAGGACAGATGGTGTAATAGGTGGTGGTGGGGAAAGGAGAAGGTCCAAAAGAATTAGGGCCATGGTTGAAGTTGGTGGCGGTGGCAATGAGGCTGTAGATGGTGGTGGAGAAATGAGGATGGATGGTGTTGAAGTTGGCGGTGGCACCGGAGCTGAAGGTGGTGGAGGGGAAAGGAGGACCGATGGAGTTGTAGATGGTGGTGGCGAAAGGAGAAGGTCAAAAAGAATCAGGGCAATGGATGACGTTGGTGGCGATGGCGGTTGCGGTGGTGGTGGCGATGGAGATGTACATGGTGGTTGTGGCGAGATATTAGAAAAGCTGAGGAGTGAACTCATTGAAACGAATAAAAATGTGGAGAAACAAGCTGGAGATATCAAGAAATTGGAAGAAACATTGAGCAGTTTACAAATAAGCATTGAACAATTTACATGA
Protein sequence

>Msa1389400

MPNRYPSIQYPIGKPRRSNRIRVRCDGERMTDGVEVGGGTGAEGGGGERRTDIVVGGGGERRRSKRIRAIVEVGGGGNEAVDGGGEIRMDGVEVGGGGGTRAEGGGGERRTDGVIGGGGERRRSKRIRAMVEVGGGGNEAVDGGGEMRMDGVEVGGGTGAEGGGGERRTDGVVDGGGERRRSKRIRAMDDVGGDGGCGGGGDGDVHGGCGEILEKLRSELIETNKNVEKQAGDIKKLEETLSSLQISIEQFT*