Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214280 | XP_003596289.1 | 84.426 | 122 | 18 | 1 | 1 | 121 | 1 | 122 | 5.79e-56 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214280 | G7IR19 | 84.426 | 122 | 18 | 1 | 1 | 121 | 1 | 122 | 2.76e-56 | 180 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0214280 | Msa0254650 | 0.896504 | 3.462621e-76 | -8.615850e-47 |
| Msa0214280 | Msa0332360 | 0.839454 | 1.569878e-57 | -8.615850e-47 |
| Msa0214280 | Msa0393100 | 0.803433 | 3.493749e-49 | -8.615850e-47 |
| Msa0214280 | Msa0816630 | 0.804364 | 2.237767e-49 | -8.615850e-47 |
| Msa0214280 | Msa0863940 | 0.805374 | 1.376539e-49 | -8.615850e-47 |
| Msa0214280 | Msa1217260 | 0.807148 | 5.823297e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214280 | MtrunA17_Chr2g0315311 | 84.426 | 122 | 18 | 1 | 1 | 121 | 1 | 122 | 5.32e-60 | 180 |
| Msa0214280 | MtrunA17_Chr2g0315301 | 60.563 | 142 | 20 | 3 | 1 | 118 | 1 | 130 | 1.45e-45 | 144 |
| Msa0214280 | MtrunA17_Chr2g0315321 | 66.102 | 118 | 23 | 4 | 1 | 118 | 1 | 101 | 1.09e-31 | 108 |
| Msa0214280 | MtrunA17_Chr2g0315331 | 59.504 | 121 | 35 | 3 | 1 | 107 | 1 | 121 | 1.90e-25 | 94.0 |
| Msa0214280 | MtrunA17_Chr2g0315291 | 64.407 | 118 | 27 | 2 | 1 | 118 | 1 | 103 | 6.92e-25 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTTGTGCATGATTATT+TGG | 0.069508 | 2_1:-58767169 | Msa0214280:five_prime_UTR |
| TATCATAAGGACATTGTTTA+AGG | 0.172598 | 2_1:+58764643 | None:intergenic |
| TTCTTTGTGCATGATTATTT+GGG | 0.272311 | 2_1:-58767168 | Msa0214280:five_prime_UTR |
| AGCACAGGAAGCGGAGGATT+CGG | 0.330833 | 2_1:-58764985 | Msa0214280:CDS |
| AGCACAGGAAGCGGAGGATT+GGG | 0.335111 | 2_1:-58764880 | Msa0214280:CDS |
| GCACAGGAAGCGGAGGATTC+GGG | 0.352203 | 2_1:-58764984 | Msa0214280:CDS |
| TAGCACAGGAAGCGGAGGAT+TGG | 0.389817 | 2_1:-58764881 | Msa0214280:CDS |
| TTAAACAAACACACTAACTT+TGG | 0.404636 | 2_1:-58767207 | Msa0214280:five_prime_UTR |
| GGGTGGGCAGCACTGGCATG+TGG | 0.407335 | 2_1:+58767080 | None:intergenic |
| TATTTGAGGGTGGGCAGCAC+TGG | 0.427483 | 2_1:+58767073 | None:intergenic |
| ATAATTTGTAATATTTCAAA+TGG | 0.428374 | 2_1:-58767125 | Msa0214280:exon |
| CCGCTTCCTGTGCTACCCCT+TGG | 0.433928 | 2_1:+58764994 | None:intergenic |
| CATAACTATACAATGTCTTA+AGG | 0.435385 | 2_1:+58764726 | None:intergenic |
| ATCAGAGGTTTATGCGTTTG+CGG | 0.444972 | 2_1:+58764850 | None:intergenic |
| TAACCATCATTTGTCGATGT+TGG | 0.450141 | 2_1:+58764955 | None:intergenic |
| TTTCAAATGGCTCTTGCAGC+AGG | 0.451956 | 2_1:-58767112 | Msa0214280:exon |
| GGTGGGCAGCACTGGCATGT+GGG | 0.487384 | 2_1:+58767081 | None:intergenic |
| CCGCTTCCTGTGCTACCCGT+TGG | 0.493161 | 2_1:+58764889 | None:intergenic |
| TTTGCTAACAAAGTATCATA+AGG | 0.496127 | 2_1:+58764630 | None:intergenic |
| GATCCAACATCGACAAATGA+TGG | 0.518991 | 2_1:-58764958 | Msa0214280:CDS |
| CCAAGGGGTAGCACAGGAAG+CGG | 0.530525 | 2_1:-58764994 | Msa0214280:CDS |
| GCACAGGAAGCGGAGGATTG+GGG | 0.533668 | 2_1:-58764879 | Msa0214280:CDS |
| ATGAAACCAAGGGGTAGCAC+AGG | 0.569869 | 2_1:-58765000 | Msa0214280:CDS |
| CCAACGGGTAGCACAGGAAG+CGG | 0.577109 | 2_1:-58764889 | Msa0214280:CDS |
| TTTAGACGCATATTTGAGGG+TGG | 0.587811 | 2_1:+58767063 | None:intergenic |
| AGTTTATGCAATGAAACCAA+GGG | 0.599375 | 2_1:-58765010 | Msa0214280:CDS |
| TTAGACGCATATTTGAGGGT+GGG | 0.609382 | 2_1:+58767064 | None:intergenic |
| AAGTTTATGCAATGAAACCA+AGG | 0.615778 | 2_1:-58765011 | Msa0214280:CDS |
| TCTTTGTGCATGATTATTTG+GGG | 0.629539 | 2_1:-58767167 | Msa0214280:five_prime_UTR |
| AGGGGTAGCACAGGAAGCGG+AGG | 0.630133 | 2_1:-58764991 | Msa0214280:CDS |
| ACGGGTAGCACAGGAAGCGG+AGG | 0.642552 | 2_1:-58764886 | Msa0214280:CDS |
| GATGAAGATCAACTTGACAA+TGG | 0.661313 | 2_1:-58764796 | Msa0214280:CDS |
| TGACAATGGCAATGAGTGAG+TGG | 0.667796 | 2_1:-58764782 | Msa0214280:exon |
| AGGAAGCGGAGGATTCGGGA+AGG | 0.688019 | 2_1:-58764980 | Msa0214280:CDS |
| GTTTATGCAATGAAACCAAG+GGG | 0.696629 | 2_1:-58765009 | Msa0214280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAAATTTAAATTTTT+TGG | - | chr2_1:58765045-58765064 | Msa0214280:CDS | 0.0% |
| !!! | TTTATAAATTTAAATTTTTT+GGG | - | chr2_1:58765046-58765065 | Msa0214280:CDS | 0.0% |
| !!! | ATAATTTGTAATATTTCAAA+TGG | - | chr2_1:58764694-58764713 | Msa0214280:three_prime_UTR | 10.0% |
| !!! | TTTAAGGAATTTAAAATTTT+AGG | - | chr2_1:58764928-58764947 | Msa0214280:CDS | 10.0% |
| !! | CAAATTTCAAAAAATTTAAA+AGG | - | chr2_1:58765103-58765122 | Msa0214280:intron | 10.0% |
| !!! | TTATAATTTTGGAAATTTAT+TGG | - | chr2_1:58765131-58765150 | Msa0214280:intron | 10.0% |
| !!! | TATAATTTTGGAAATTTATT+GGG | - | chr2_1:58765132-58765151 | Msa0214280:intron | 10.0% |
| !!! | ATTTTAAATTCTTAACTTTT+AGG | - | chr2_1:58765224-58765243 | Msa0214280:intron | 10.0% |
| !!! | AATTAATCTAATTATTTTGT+AGG | + | chr2_1:58765698-58765717 | None:intergenic | 10.0% |
| !!! | AATCAAAGTATTAATTAATT+TGG | - | chr2_1:58765751-58765770 | Msa0214280:intron | 10.0% |
| !! | ATATCAAATATATACTTACA+TGG | + | chr2_1:58764798-58764817 | None:intergenic | 15.0% |
| !!! | TATTTCTAAATATTCTTGTT+TGG | - | chr2_1:58764980-58764999 | Msa0214280:CDS | 15.0% |
| !!! | AATTCATTTTCATCATTTTT+AGG | - | chr2_1:58765018-58765037 | Msa0214280:CDS | 15.0% |
| !!! | AAAAGGTCAATTTATAATTT+TGG | - | chr2_1:58765120-58765139 | Msa0214280:intron | 15.0% |
| !!! | ATAATTTTGGAAATTTATTG+GGG | - | chr2_1:58765133-58765152 | Msa0214280:intron | 15.0% |
| !!! | TGAAAATTTTGGAAAATTTA+AGG | - | chr2_1:58765162-58765181 | Msa0214280:intron | 15.0% |
| !!! | AATTTAATTTGGTAATGTTA+TGG | + | chr2_1:58765920-58765939 | None:intergenic | 15.0% |
| !! | ATAACATTACCAAATTAAAT+TGG | - | chr2_1:58765919-58765938 | Msa0214280:intron | 15.0% |
| !! | TAACATTACCAAATTAAATT+GGG | - | chr2_1:58765920-58765939 | Msa0214280:intron | 15.0% |
| !!! | AATTAGTTTCTTAATTAAAC+TGG | + | chr2_1:58766672-58766691 | None:intergenic | 15.0% |
| !! | ATAGATTTATAATCATTCAT+TGG | - | chr2_1:58766700-58766719 | Msa0214280:intron | 15.0% |
| !! | AATGACAACTTTGATTAAAT+AGG | - | chr2_1:58764819-58764838 | Msa0214280:CDS | 20.0% |
| !! | ATGACAACTTTGATTAAATA+GGG | - | chr2_1:58764820-58764839 | Msa0214280:CDS | 20.0% |
| !!! | AAACATTTTTTTAAGTAGTC+TGG | - | chr2_1:58764854-58764873 | Msa0214280:CDS | 20.0% |
| !!! | ATTTTGAAAATTGAAAGTAG+AGG | - | chr2_1:58765072-58765091 | Msa0214280:intron | 20.0% |
| !!! | TTTAGAAGGAGAATATTTTT+AGG | + | chr2_1:58765386-58765405 | None:intergenic | 20.0% |
| !!! | TATGAGATTTTTTATCTCAA+GGG | + | chr2_1:58765592-58765611 | None:intergenic | 20.0% |
| !!! | TTATGAGATTTTTTATCTCA+AGG | + | chr2_1:58765593-58765612 | None:intergenic | 20.0% |
| !! | AACATTACCAAATTAAATTG+GGG | - | chr2_1:58765921-58765940 | Msa0214280:intron | 20.0% |
| ! | TTCTTTGTGCATGATTATTT+GGG | - | chr2_1:58764651-58764670 | Msa0214280:three_prime_UTR | 25.0% |
| !!! | TTTTTTAGACGCATATTTGA+GGG | + | chr2_1:58764762-58764781 | None:intergenic | 25.0% |
| !!! | ATTTTTTAGACGCATATTTG+AGG | + | chr2_1:58764763-58764782 | None:intergenic | 25.0% |
| !! | GAGGTAATTGACAAATTTTA+AGG | - | chr2_1:58764912-58764931 | Msa0214280:CDS | 25.0% |
| !! | TCTAAATATTCTTGTTTGGA+TGG | - | chr2_1:58764984-58765003 | Msa0214280:CDS | 25.0% |
| !!! | CCATTGTTTTGATGATAATT+TGG | + | chr2_1:58765320-58765339 | None:intergenic | 25.0% |
| ! | CCAAATTATCATCAAAACAA+TGG | - | chr2_1:58765317-58765336 | Msa0214280:intron | 25.0% |
| ! | GTTTAAACCCCAATTTAATT+TGG | + | chr2_1:58765931-58765950 | None:intergenic | 25.0% |
| ! | AATGGTGAAGATGAATAAAT+AGG | - | chr2_1:58766094-58766113 | Msa0214280:intron | 25.0% |
| ! | ATTGAAAAGATTACCAACTT+CGG | - | chr2_1:58766485-58766504 | Msa0214280:intron | 25.0% |
| !! | TTTTCGCTTATAATAATGAC+CGG | - | chr2_1:58766567-58766586 | Msa0214280:intron | 25.0% |
| ! | AGTTAATCCTAAAAAACCAA+CGG | - | chr2_1:58766914-58766933 | Msa0214280:intron | 25.0% |
| !!! | GAATTTTTTGGTGGATTTTT+TGG | + | chr2_1:58766996-58767015 | None:intergenic | 25.0% |
| !!! | TCATCATCATCAGAATTTTT+TGG | + | chr2_1:58767008-58767027 | None:intergenic | 25.0% |
| ! | CATAACTATACAATGTCTTA+AGG | + | chr2_1:58767096-58767115 | None:intergenic | 25.0% |
| ! | TATCATAAGGACATTGTTTA+AGG | + | chr2_1:58767179-58767198 | None:intergenic | 25.0% |
| !! | TTTGCTAACAAAGTATCATA+AGG | + | chr2_1:58767192-58767211 | None:intergenic | 25.0% |
| CTTCTTTGTGCATGATTATT+TGG | - | chr2_1:58764650-58764669 | Msa0214280:three_prime_UTR | 30.0% | |
| TCTTTGTGCATGATTATTTG+GGG | - | chr2_1:58764652-58764671 | Msa0214280:three_prime_UTR | 30.0% | |
| !!! | CATTTTTTTAAGTAGTCTGG+TGG | - | chr2_1:58764857-58764876 | Msa0214280:CDS | 30.0% |
| TTCAACTCTTAAAGTGTGTT+TGG | - | chr2_1:58764887-58764906 | Msa0214280:CDS | 30.0% | |
| ! | TGGGGTCAATTTGAAAATTT+TGG | - | chr2_1:58765151-58765170 | Msa0214280:intron | 30.0% |
| ! | TTAGGTGACGTAATATTTTG+AGG | + | chr2_1:58765368-58765387 | None:intergenic | 30.0% |
| GAAATTATGAAGAGAGAAGT+TGG | - | chr2_1:58765437-58765456 | Msa0214280:intron | 30.0% | |
| AGAGAAACATGTGAGAAATA+GGG | - | chr2_1:58765479-58765498 | Msa0214280:intron | 30.0% | |
| ! | GAGAAATAGGGTAGATTTTA+TGG | - | chr2_1:58765491-58765510 | Msa0214280:intron | 30.0% |
| !! | GGTAGATTTTATGGATTGTT+TGG | - | chr2_1:58765500-58765519 | Msa0214280:intron | 30.0% |
| !!! | CAAGGGTATTTTTGTACTTT+TGG | + | chr2_1:58765575-58765594 | None:intergenic | 30.0% |
| GGAGATTAGAAACTAAGAAA+GGG | + | chr2_1:58765821-58765840 | None:intergenic | 30.0% | |
| AGGAGATTAGAAACTAAGAA+AGG | + | chr2_1:58765822-58765841 | None:intergenic | 30.0% | |
| GAATAGAAATTAAGATGGGT+CGG | + | chr2_1:58765866-58765885 | None:intergenic | 30.0% | |
| GGGAGAATAGAAATTAAGAT+GGG | + | chr2_1:58765870-58765889 | None:intergenic | 30.0% | |
| TGGGAGAATAGAAATTAAGA+TGG | + | chr2_1:58765871-58765890 | None:intergenic | 30.0% | |
| CAAGGATATACAATATGTGT+GGG | + | chr2_1:58765890-58765909 | None:intergenic | 30.0% | |
| ACAAGGATATACAATATGTG+TGG | + | chr2_1:58765891-58765910 | None:intergenic | 30.0% | |
| ! | ATGTTTTCATGCTATGGATA+GGG | + | chr2_1:58766015-58766034 | None:intergenic | 30.0% |
| ! | TTCTTCATGTTTTCATGCTA+TGG | + | chr2_1:58766021-58766040 | None:intergenic | 30.0% |
| ATGAATAAATAGGACAAGAC+AGG | - | chr2_1:58766104-58766123 | Msa0214280:intron | 30.0% | |
| TGAATAAATAGGACAAGACA+GGG | - | chr2_1:58766105-58766124 | Msa0214280:intron | 30.0% | |
| ! | CATGTGAACAAAGATTAGTT+GGG | + | chr2_1:58766401-58766420 | None:intergenic | 30.0% |
| AAGTTTATGCAATGAAACCA+AGG | - | chr2_1:58766808-58766827 | Msa0214280:intron | 30.0% | |
| AGTTTATGCAATGAAACCAA+GGG | - | chr2_1:58766809-58766828 | Msa0214280:intron | 30.0% | |
| GTTAATCCTAAAAAACCAAC+GGG | - | chr2_1:58766915-58766934 | Msa0214280:intron | 30.0% | |
| !!! | TCATCATCAGAATTTTTTGG+TGG | + | chr2_1:58767005-58767024 | None:intergenic | 30.0% |
| ! | TGAGTGGTGATTTTTCTTTT+TGG | - | chr2_1:58767053-58767072 | Msa0214280:CDS | 30.0% |
| TCTTAAAGTGTGTTTGGATG+AGG | - | chr2_1:58764893-58764912 | Msa0214280:CDS | 35.0% | |
| TCCTTCTAAACACACTCTTA+GGG | - | chr2_1:58765396-58765415 | Msa0214280:intron | 35.0% | |
| GAGAGAAACATGTGAGAAAT+AGG | - | chr2_1:58765478-58765497 | Msa0214280:intron | 35.0% | |
| TAGTTTCTAATCTCCTTCCA+CGG | - | chr2_1:58765826-58765845 | Msa0214280:intron | 35.0% | |
| !! | ATTTGGTAATGTTATGGCTG+AGG | + | chr2_1:58765914-58765933 | None:intergenic | 35.0% |
| ! | CATGTTTTCATGCTATGGAT+AGG | + | chr2_1:58766016-58766035 | None:intergenic | 35.0% |
| GAATAAATAGGACAAGACAG+GGG | - | chr2_1:58766106-58766125 | Msa0214280:intron | 35.0% | |
| AGAGGAAACTAAAAAGCAGT+GGG | - | chr2_1:58766185-58766204 | Msa0214280:intron | 35.0% | |
| !! | TTTGGTTTGCGAAGAAATTG+TGG | + | chr2_1:58766234-58766253 | None:intergenic | 35.0% |
| GAAAAAGAGAAGAGAGAAGT+TGG | + | chr2_1:58766295-58766314 | None:intergenic | 35.0% | |
| GTGAATAAGAGAGAAATTCG+AGG | - | chr2_1:58766339-58766358 | Msa0214280:intron | 35.0% | |
| ! | GAACAAAGATTAGTTGGGTA+GGG | + | chr2_1:58766396-58766415 | None:intergenic | 35.0% |
| ! | TGAACAAAGATTAGTTGGGT+AGG | + | chr2_1:58766397-58766416 | None:intergenic | 35.0% |
| CCATGTGAACAAAGATTAGT+TGG | + | chr2_1:58766402-58766421 | None:intergenic | 35.0% | |
| CCAACTAATCTTTGTTCACA+TGG | - | chr2_1:58766399-58766418 | Msa0214280:intron | 35.0% | |
| TCATAGTGCATGTGAAAACA+TGG | + | chr2_1:58766527-58766546 | None:intergenic | 35.0% | |
| GTTTATGCAATGAAACCAAG+GGG | - | chr2_1:58766810-58766829 | Msa0214280:intron | 35.0% | |
| TAACCATCATTTGTCGATGT+TGG | + | chr2_1:58766867-58766886 | None:intergenic | 35.0% | |
| GATGAAGATCAACTTGACAA+TGG | - | chr2_1:58767023-58767042 | Msa0214280:intron | 35.0% | |
| TTAGACGCATATTTGAGGGT+GGG | + | chr2_1:58764758-58764777 | None:intergenic | 40.0% | |
| TTTAGACGCATATTTGAGGG+TGG | + | chr2_1:58764759-58764778 | None:intergenic | 40.0% | |
| !!! | TTTTTAAGTAGTCTGGTGGC+TGG | - | chr2_1:58764861-58764880 | Msa0214280:CDS | 40.0% |
| CTCCTTCTAAACACACTCTT+AGG | - | chr2_1:58765395-58765414 | Msa0214280:intron | 40.0% | |
| ! | ACCCTAAGAGTGTGTTTAGA+AGG | + | chr2_1:58765400-58765419 | None:intergenic | 40.0% |
| AGAAATTAAGATGGGTCGGT+CGG | + | chr2_1:58765862-58765881 | None:intergenic | 40.0% | |
| TAATGTTATGGCTGAGGACA+AGG | + | chr2_1:58765908-58765927 | None:intergenic | 40.0% | |
| !!! | GCTGAGAATAGTTTTGTGGA+TGG | + | chr2_1:58765986-58766005 | None:intergenic | 40.0% |
| AGTTCAGCGAGTTTCTTCAA+TGG | - | chr2_1:58766076-58766095 | Msa0214280:intron | 40.0% | |
| CTCTGATATGCGAAGAAAGA+CGG | + | chr2_1:58766167-58766186 | None:intergenic | 40.0% | |
| TCTTTCTTCGCATATCAGAG+AGG | - | chr2_1:58766167-58766186 | Msa0214280:intron | 40.0% | |
| GAGAGGAAACTAAAAAGCAG+TGG | - | chr2_1:58766184-58766203 | Msa0214280:intron | 40.0% | |
| GAGGAAACTAAAAAGCAGTG+GGG | - | chr2_1:58766186-58766205 | Msa0214280:intron | 40.0% | |
| ! | GAGAGAGATTCTAAAAACGC+GGG | + | chr2_1:58766212-58766231 | None:intergenic | 40.0% |
| ! | GGAGAGAGATTCTAAAAACG+CGG | + | chr2_1:58766213-58766232 | None:intergenic | 40.0% |
| GATAGCTAACTTCTCTCGTT+TGG | + | chr2_1:58766252-58766271 | None:intergenic | 40.0% | |
| ! | TTTTCACCTCAACCAAACAC+AGG | - | chr2_1:58766310-58766329 | Msa0214280:intron | 40.0% |
| ATTCACCTTAAGCCTGTGTT+TGG | + | chr2_1:58766325-58766344 | None:intergenic | 40.0% | |
| TAGGGACGTTACATTATCCA+GGG | + | chr2_1:58766378-58766397 | None:intergenic | 40.0% | |
| TCGCTTATAATAATGACCGG+AGG | - | chr2_1:58766570-58766589 | Msa0214280:intron | 40.0% | |
| ATGTACACATTAGGGACTCA+TGG | - | chr2_1:58766593-58766612 | Msa0214280:intron | 40.0% | |
| GATCCAACATCGACAAATGA+TGG | - | chr2_1:58766861-58766880 | Msa0214280:intron | 40.0% | |
| ATCAGAGGTTTATGCGTTTG+CGG | + | chr2_1:58766972-58766991 | None:intergenic | 40.0% | |
| !!! | GGTGGATTTTTTGGTATCAG+AGG | + | chr2_1:58766987-58767006 | None:intergenic | 40.0% |
| TTTCAAATGGCTCTTGCAGC+AGG | - | chr2_1:58764707-58764726 | Msa0214280:three_prime_UTR | 45.0% | |
| ACACACTCTTAGGGTGTGTT+TGG | - | chr2_1:58765405-58765424 | Msa0214280:intron | 45.0% | |
| CTCTTAGGGTGTGTTTGGTT+TGG | - | chr2_1:58765410-58765429 | Msa0214280:intron | 45.0% | |
| !! | CTGCGCTGAGAATAGTTTTG+TGG | + | chr2_1:58765990-58766009 | None:intergenic | 45.0% |
| CACAAAACTATTCTCAGCGC+AGG | - | chr2_1:58765988-58766007 | Msa0214280:intron | 45.0% | |
| !! | GAAGTTGGTGAGAGAGAAGT+TGG | + | chr2_1:58766280-58766299 | None:intergenic | 45.0% |
| CTTAAGCCTGTGTTTGGTTG+AGG | + | chr2_1:58766319-58766338 | None:intergenic | 45.0% | |
| CTCAACCAAACACAGGCTTA+AGG | - | chr2_1:58766317-58766336 | Msa0214280:intron | 45.0% | |
| GTAGGGACGTTACATTATCC+AGG | + | chr2_1:58766379-58766398 | None:intergenic | 45.0% | |
| ACCGGAGGATGTACACATTA+GGG | - | chr2_1:58766585-58766604 | Msa0214280:intron | 45.0% | |
| TCCCTAATGTGTACATCCTC+CGG | + | chr2_1:58766589-58766608 | None:intergenic | 45.0% | |
| !!! | GTGCTACCCGTTGGTTTTTT+AGG | + | chr2_1:58766924-58766943 | None:intergenic | 45.0% |
| AAAAAACCAACGGGTAGCAC+AGG | - | chr2_1:58766924-58766943 | Msa0214280:intron | 45.0% | |
| TGACAATGGCAATGAGTGAG+TGG | - | chr2_1:58767037-58767056 | Msa0214280:intron | 45.0% | |
| GGACAAGACAGGGGTAGTAT+AGG | - | chr2_1:58766115-58766134 | Msa0214280:intron | 50.0% | |
| GACCGGAGGATGTACACATT+AGG | - | chr2_1:58766584-58766603 | Msa0214280:intron | 50.0% | |
| ATGAAACCAAGGGGTAGCAC+AGG | - | chr2_1:58766819-58766838 | Msa0214280:intron | 50.0% | |
| TATTTGAGGGTGGGCAGCAC+TGG | + | chr2_1:58764749-58764768 | None:intergenic | 55.0% | |
| ATGGGTCGGTCGGTTAGCAA+TGG | + | chr2_1:58765852-58765871 | None:intergenic | 55.0% | |
| GAGGTTCGAACTTCGATCCC+TGG | - | chr2_1:58766358-58766377 | Msa0214280:intron | 55.0% | |
| TACCAACTTCGGTCACGACC+AGG | - | chr2_1:58766496-58766515 | Msa0214280:intron | 55.0% | |
| TGTGAAAACATGGAGCCGCC+TGG | + | chr2_1:58766517-58766536 | None:intergenic | 55.0% | |
| AGCACAGGAAGCGGAGGATT+CGG | - | chr2_1:58766834-58766853 | Msa0214280:intron | 55.0% | |
| TAGCACAGGAAGCGGAGGAT+TGG | - | chr2_1:58766833-58766852 | Msa0214280:intron | 55.0% | |
| AGCACAGGAAGCGGAGGATT+GGG | - | chr2_1:58766834-58766853 | Msa0214280:intron | 55.0% | |
| CGGTTAGCAATGGCCGTGGA+AGG | + | chr2_1:58765842-58765861 | None:intergenic | 60.0% | |
| CAACTTCGGTCACGACCAGG+CGG | - | chr2_1:58766499-58766518 | Msa0214280:intron | 60.0% | |
| CCAAGGGGTAGCACAGGAAG+CGG | - | chr2_1:58766825-58766844 | Msa0214280:intron | 60.0% | |
| GCACAGGAAGCGGAGGATTC+GGG | - | chr2_1:58766835-58766854 | Msa0214280:intron | 60.0% | |
| AGGAAGCGGAGGATTCGGGA+AGG | - | chr2_1:58766839-58766858 | Msa0214280:intron | 60.0% | |
| CCAACGGGTAGCACAGGAAG+CGG | - | chr2_1:58766930-58766949 | Msa0214280:intron | 60.0% | |
| GCACAGGAAGCGGAGGATTG+GGG | - | chr2_1:58766940-58766959 | Msa0214280:intron | 60.0% | |
| !! | GGTGGGCAGCACTGGCATGT+GGG | + | chr2_1:58764741-58764760 | None:intergenic | 65.0% |
| CGGTCGGTTAGCAATGGCCG+TGG | + | chr2_1:58765846-58765865 | None:intergenic | 65.0% | |
| CGCCTGGTCGTGACCGAAGT+TGG | + | chr2_1:58766501-58766520 | None:intergenic | 65.0% | |
| CCGCTTCCTGTGCTACCCCT+TGG | + | chr2_1:58766828-58766847 | None:intergenic | 65.0% | |
| AGGGGTAGCACAGGAAGCGG+AGG | - | chr2_1:58766828-58766847 | Msa0214280:intron | 65.0% | |
| CCGCTTCCTGTGCTACCCGT+TGG | + | chr2_1:58766933-58766952 | None:intergenic | 65.0% | |
| ACGGGTAGCACAGGAAGCGG+AGG | - | chr2_1:58766933-58766952 | Msa0214280:intron | 65.0% | |
| !! | GGGTGGGCAGCACTGGCATG+TGG | + | chr2_1:58764742-58764761 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 58764614 | 58767227 | 58764614 | ID=Msa0214280;Name=Msa0214280 |
| chr2_1 | mRNA | 58764614 | 58767227 | 58764614 | ID=Msa0214280-mRNA-1;Parent=Msa0214280;Name=Msa0214280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=99|1|1|1|1|1|2|172|121 |
| chr2_1 | exon | 58764614 | 58765065 | 58764614 | ID=Msa0214280-mRNA-1:exon:16121;Parent=Msa0214280-mRNA-1 |
| chr2_1 | exon | 58767043 | 58767227 | 58767043 | ID=Msa0214280-mRNA-1:exon:16120;Parent=Msa0214280-mRNA-1 |
| chr2_1 | five_prime_UTR | 58767129 | 58767227 | 58767129 | ID=Msa0214280-mRNA-1:five_prime_utr;Parent=Msa0214280-mRNA-1 |
| chr2_1 | CDS | 58767043 | 58767128 | 58767043 | ID=Msa0214280-mRNA-1:cds;Parent=Msa0214280-mRNA-1 |
| chr2_1 | CDS | 58764786 | 58765065 | 58764786 | ID=Msa0214280-mRNA-1:cds;Parent=Msa0214280-mRNA-1 |
| chr2_1 | three_prime_UTR | 58764614 | 58764785 | 58764614 | ID=Msa0214280-mRNA-1:three_prime_utr;Parent=Msa0214280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
