AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1217260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1217260 MtrunA17_Chr4g0066711 91.099 191 10 2 1 188 1 187 1.09e-105 301
Msa1217260 MtrunA17_Chr7g0268681 33.962 159 92 4 32 182 29 182 6.70e-24 93.2
Msa1217260 MtrunA17_Chr2g0286341 33.735 166 93 3 34 185 25 187 9.78e-22 87.4
Msa1217260 MtrunA17_Chr4g0066721 33.566 143 79 3 33 161 34 174 1.52e-19 82.0
Msa1217260 MtrunA17_Chr4g0021111 33.548 155 88 4 34 184 10 153 1.89e-17 75.5
Msa1217260 MtrunA17_Chr8g0381001 28.736 174 104 4 1 161 1 167 2.16e-16 73.6
Msa1217260 MtrunA17_Chr4g0042551 30.864 162 99 5 30 182 57 214 4.66e-16 73.2
Msa1217260 MtrunA17_Chr7g0217691 31.707 164 101 6 30 185 26 186 5.68e-15 69.7
Msa1217260 MtrunA17_Chr5g0417761 35.484 155 86 5 30 172 26 178 2.67e-14 67.8
Msa1217260 MtrunA17_Chr7g0251531 31.169 154 97 4 10 155 5 157 7.91e-14 66.6
Msa1217260 MtrunA17_Chr2g0290281 32.692 156 99 3 33 182 12 167 5.17e-12 61.6
Msa1217260 MtrunA17_Chr2g0303151 32.203 118 75 4 63 178 71 185 5.91e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1217260 AT3G06390.1 47.977 173 75 3 1 158 1 173 1.39e-50 162
Msa1217260 AT4G15610.1 55.944 143 54 2 33 166 30 172 3.49e-49 158
Msa1217260 AT4G15610.2 62.766 94 35 0 73 166 23 116 7.35e-37 125
Msa1217260 AT4G15630.1 30.247 162 97 2 32 179 27 186 3.92e-20 83.6
Msa1217260 AT5G15290.1 32.353 136 83 4 33 161 29 162 3.50e-17 75.9
Msa1217260 AT4G15620.1 27.950 161 100 2 33 179 28 186 8.85e-17 74.7
Msa1217260 AT1G14160.1 30.128 156 101 4 30 179 49 202 7.24e-15 70.1
Msa1217260 AT2G36100.1 30.882 136 87 3 32 161 48 182 8.22e-13 64.7
Msa1217260 AT1G03700.1 29.412 153 96 3 34 182 11 155 5.61e-12 61.6

Find 61 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGTGTGGTACATGATTT+TGG 0.135276 8_1:-79509517 Msa1217260:three_prime_UTR
AGCTGGGAGTGTTGCATATT+TGG 0.167909 8_1:-79509906 Msa1217260:CDS
TTCTCCTCCATTTAATCTTC+TGG 0.173285 8_1:-79510070 Msa1217260:CDS
GTGGCTGCATTCTCTGTTGC+TGG 0.248825 8_1:-79510161 Msa1217260:CDS
GCATGTTGCTACAACTTTCT+TGG 0.251253 8_1:-79511448 Msa1217260:five_prime_UTR
TTGTCACTCTGTTGCTCATT+TGG 0.263577 8_1:-79509778 Msa1217260:CDS
AAAATCTATCACATCTTGTT+TGG 0.283680 8_1:+79509386 None:intergenic
GGCTCCGGCTTCTTCGGCTT+CGG 0.290085 8_1:-79511226 Msa1217260:CDS
CCGCATCCCAGAAGATTAAA+TGG 0.293656 8_1:+79510063 None:intergenic
GCTGGGAGTGTTGCATATTT+GGG 0.294630 8_1:-79509905 Msa1217260:CDS
AGGGAAACAACCACACTAAT+TGG 0.296811 8_1:-79509877 Msa1217260:CDS
GCTCCGGCTTCTTCGGCTTC+GGG 0.310874 8_1:-79511225 Msa1217260:CDS
TCAGTTGTTGTGATGGTTAC+TGG 0.316039 8_1:-79511138 Msa1217260:CDS
GATTAAATGGAGGAGAAGTT+TGG 0.346130 8_1:+79510076 None:intergenic
TCTCCTCCATTTAATCTTCT+GGG 0.353459 8_1:-79510069 Msa1217260:CDS
CAACTTTCTTCGAATCTACT+TGG 0.362939 8_1:+79509724 None:intergenic
GGGATATTAGCTTCAGCAAC+AGG 0.379873 8_1:-79509932 Msa1217260:CDS
CAAATATATATAGATAGATA+TGG 0.393561 8_1:+79511404 None:intergenic
AAATCTATCACATCTTGTTT+GGG 0.404170 8_1:+79509387 None:intergenic
TTCAACTCCGGCTCCGGCTC+CGG 0.408715 8_1:-79511241 Msa1217260:CDS
ATTCTCTTGCAGGTGATGTT+GGG 0.411611 8_1:-79509953 Msa1217260:intron
AATATCAGCTATTTATAGAA+TGG 0.413420 8_1:+79511338 None:intergenic
GCTTCAGCAACAGGCACAGC+TGG 0.420135 8_1:-79509923 Msa1217260:CDS
TCTGTAGCAGTGGGATTGTT+TGG 0.423026 8_1:-79509806 Msa1217260:CDS
GGCTCCGGCTCCGGCTTCTT+CGG 0.427733 8_1:-79511232 Msa1217260:CDS
AATTAAAATGCTCTTTAAAG+AGG 0.431280 8_1:+79509361 None:intergenic
TGGCTGCATTCTCTGTTGCT+GGG 0.437451 8_1:-79510160 Msa1217260:CDS
GAAGAAGCCGGAGCCGGAGC+CGG 0.446814 8_1:+79511234 None:intergenic
ATCATCTTCAACTCCGGCTC+CGG 0.452738 8_1:-79511247 Msa1217260:CDS
CTAAGTTTGATTTGATCCTA+AGG 0.461173 8_1:-79511188 Msa1217260:CDS
TGTTGCATATTTGGGTTTGA+AGG 0.466255 8_1:-79509897 Msa1217260:CDS
GATTCTCTTGCAGGTGATGT+TGG 0.466475 8_1:-79509954 Msa1217260:intron
AATATGACATGCTATGATAC+TGG 0.472959 8_1:+79509431 None:intergenic
GAAGCCGAAGAAGCCGGAGC+CGG 0.492051 8_1:+79511228 None:intergenic
GTTGAAGATGATTTGTACTC+AGG 0.496735 8_1:+79511258 None:intergenic
AACTTTCTTCGAATCTACTT+GGG 0.503750 8_1:+79509725 None:intergenic
TGCAAAACTTACACAAAGGC+TGG 0.513124 8_1:+79511072 None:intergenic
ACACCCGAAGCCGAAGAAGC+CGG 0.514862 8_1:+79511222 None:intergenic
TCTGTTGTTTGCAGCATCAG+TGG 0.515368 8_1:-79511163 Msa1217260:CDS
GGCTGGTGAGTATCTAAACT+TGG 0.516960 8_1:+79511089 None:intergenic
GAGCAAGACATGGCTTCTAC+TGG 0.517836 8_1:-79511285 Msa1217260:exon
GTTGCATATTTGGGTTTGAA+GGG 0.522790 8_1:-79509896 Msa1217260:CDS
ATGGTGACTAGCTAAGGATA+AGG 0.528718 8_1:+79511357 None:intergenic
TATAGAATGGTGACTAGCTA+AGG 0.531615 8_1:+79511351 None:intergenic
TTTGAGGTTTGGCTTTCGGA+TGG 0.533858 8_1:+79510100 None:intergenic
CTGCAAACAACAGAAACCTT+AGG 0.533947 8_1:+79511172 None:intergenic
GGTGAGTATCTAAACTTGGC+TGG 0.534764 8_1:+79511093 None:intergenic
CCATTTAATCTTCTGGGATG+CGG 0.538436 8_1:-79510063 Msa1217260:intron
TATTGGTGCCTCTGTAGCAG+TGG 0.549094 8_1:-79509816 Msa1217260:CDS
GTACAAATCATCTTCAACTC+CGG 0.560040 8_1:-79511253 Msa1217260:CDS
AAACAATCCCACTGCTACAG+AGG 0.565188 8_1:+79509808 None:intergenic
ATTGGTGCCTCTGTAGCAGT+GGG 0.574405 8_1:-79509815 Msa1217260:CDS
CTTCAGCAACAGGCACAGCT+GGG 0.583484 8_1:-79509922 Msa1217260:CDS
AGTGGCATCAGTTGTTGTGA+TGG 0.612540 8_1:-79511145 Msa1217260:CDS
AGTAGATTCGAAGAAAGTTG+TGG 0.613149 8_1:-79509721 Msa1217260:exon
TTCTCTTGCAGGTGATGTTG+GGG 0.618127 8_1:-79509952 Msa1217260:intron
ATGTGTGTAATTATCTACAA+AGG 0.625603 8_1:-79509562 Msa1217260:three_prime_UTR
TAGATATGGACTTGTGAACG+AGG 0.663105 8_1:+79511418 None:intergenic
AGATTGAATAATTAACCAAG+TGG 0.664798 8_1:-79509467 Msa1217260:three_prime_UTR
TGCAAAACTTGTCATAGATG+TGG 0.673434 8_1:+79509843 None:intergenic
CATCCCAGAAGATTAAATGG+AGG 0.717011 8_1:+79510066 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAGAAATTATATAAAAAAA+TGG - chr8_1:79510109-79510128 Msa1217260:CDS 10.0%
!!! ATTATATAAAAAAATGGATT+TGG - chr8_1:79510115-79510134 Msa1217260:CDS 10.0%
!! GAAGAAATTATATAAAAAAA+TGG - chr8_1:79510109-79510128 Msa1217260:CDS 10.0%
!!! ATTATATAAAAAAATGGATT+TGG - chr8_1:79510115-79510134 Msa1217260:CDS 10.0%
!! CAAATATATATAGATAGATA+TGG + chr8_1:79509417-79509436 None:intergenic 15.0%
!! AAAAATTGGTTATATTAGTT+TGG + chr8_1:79509510-79509529 None:intergenic 15.0%
!!! AATATAATACTTTTCACTAT+TGG + chr8_1:79510268-79510287 None:intergenic 15.0%
!!! TATTTTACATTATATTAGTG+TGG - chr8_1:79511288-79511307 Msa1217260:exon 15.0%
!!! TCAATCTATTTTATATTTGT+GGG + chr8_1:79511338-79511357 None:intergenic 15.0%
!!! TTCAATCTATTTTATATTTG+TGG + chr8_1:79511339-79511358 None:intergenic 15.0%
!! CAAATATATATAGATAGATA+TGG + chr8_1:79509417-79509436 None:intergenic 15.0%
!! AAAAATTGGTTATATTAGTT+TGG + chr8_1:79509510-79509529 None:intergenic 15.0%
!!! AATATAATACTTTTCACTAT+TGG + chr8_1:79510268-79510287 None:intergenic 15.0%
!!! TATTTTACATTATATTAGTG+TGG - chr8_1:79511288-79511307 Msa1217260:exon 15.0%
!!! TCAATCTATTTTATATTTGT+GGG + chr8_1:79511338-79511357 None:intergenic 15.0%
!!! TTCAATCTATTTTATATTTG+TGG + chr8_1:79511339-79511358 None:intergenic 15.0%
!! AATATCAGCTATTTATAGAA+TGG + chr8_1:79509483-79509502 None:intergenic 20.0%
!! ATAACTATTAAGCATCTAAT+TGG - chr8_1:79509825-79509844 Msa1217260:CDS 20.0%
!! TTAGTTATTTGCAATATTCT+TGG - chr8_1:79509889-79509908 Msa1217260:CDS 20.0%
!! TAGTTATTTGCAATATTCTT+GGG - chr8_1:79509890-79509909 Msa1217260:CDS 20.0%
!! GAAGAAAATTGTAACATAAA+TGG + chr8_1:79510162-79510181 None:intergenic 20.0%
!! GTATTGCAAAATTACAAATT+TGG + chr8_1:79510331-79510350 None:intergenic 20.0%
!! AATTAATGTCAATGAGAATA+AGG + chr8_1:79510577-79510596 None:intergenic 20.0%
!! AAGGTAAAAATGGAATTAAA+AGG + chr8_1:79510798-79510817 None:intergenic 20.0%
!!! AATTAAAATGCTCTTTAAAG+AGG + chr8_1:79511460-79511479 None:intergenic 20.0%
!! ATGCAAATTAATTAAGTTAG+AGG + chr8_1:79509354-79509373 None:intergenic 20.0%
!! AATATCAGCTATTTATAGAA+TGG + chr8_1:79509483-79509502 None:intergenic 20.0%
!! ATAACTATTAAGCATCTAAT+TGG - chr8_1:79509825-79509844 Msa1217260:CDS 20.0%
!! TTAGTTATTTGCAATATTCT+TGG - chr8_1:79509889-79509908 Msa1217260:CDS 20.0%
!! TAGTTATTTGCAATATTCTT+GGG - chr8_1:79509890-79509909 Msa1217260:CDS 20.0%
!! GAAGAAAATTGTAACATAAA+TGG + chr8_1:79510162-79510181 None:intergenic 20.0%
!! GTATTGCAAAATTACAAATT+TGG + chr8_1:79510331-79510350 None:intergenic 20.0%
!! AATTAATGTCAATGAGAATA+AGG + chr8_1:79510577-79510596 None:intergenic 20.0%
!! AAGGTAAAAATGGAATTAAA+AGG + chr8_1:79510798-79510817 None:intergenic 20.0%
!!! AATTAAAATGCTCTTTAAAG+AGG + chr8_1:79511460-79511479 None:intergenic 20.0%
! ATAACAAACATAAAACTCAG+CGG + chr8_1:79509852-79509871 None:intergenic 25.0%
! TCATAATTTATGAGACACTA+AGG - chr8_1:79510204-79510223 Msa1217260:intron 25.0%
! GTATTAATCAAATGGAGAAT+TGG + chr8_1:79510394-79510413 None:intergenic 25.0%
! TTAATTAGGAGAAAGAAAAG+CGG + chr8_1:79510416-79510435 None:intergenic 25.0%
! ATGAGAATAAGGTCTTAATA+TGG + chr8_1:79510566-79510585 None:intergenic 25.0%
!! CAATAATCACAGATATTTTG+TGG - chr8_1:79510638-79510657 Msa1217260:intron 25.0%
! AGTATTTAGCAAGGTAAAAA+TGG + chr8_1:79510808-79510827 None:intergenic 25.0%
! GAGTATAATAGTATTTAGCA+AGG + chr8_1:79510817-79510836 None:intergenic 25.0%
!! AAATTTTATGCCAATTAGTG+TGG + chr8_1:79510954-79510973 None:intergenic 25.0%
! ATGTGTGTAATTATCTACAA+AGG - chr8_1:79511256-79511275 Msa1217260:CDS 25.0%
! AGATTGAATAATTAACCAAG+TGG - chr8_1:79511351-79511370 Msa1217260:five_prime_UTR 25.0%
!! AAATCTATCACATCTTGTTT+GGG + chr8_1:79511434-79511453 None:intergenic 25.0%
! AAAATCTATCACATCTTGTT+TGG + chr8_1:79511435-79511454 None:intergenic 25.0%
! ATAACAAACATAAAACTCAG+CGG + chr8_1:79509852-79509871 None:intergenic 25.0%
! TCATAATTTATGAGACACTA+AGG - chr8_1:79510204-79510223 Msa1217260:intron 25.0%
! GTATTAATCAAATGGAGAAT+TGG + chr8_1:79510394-79510413 None:intergenic 25.0%
! TTAATTAGGAGAAAGAAAAG+CGG + chr8_1:79510416-79510435 None:intergenic 25.0%
! ATGAGAATAAGGTCTTAATA+TGG + chr8_1:79510566-79510585 None:intergenic 25.0%
!! CAATAATCACAGATATTTTG+TGG - chr8_1:79510638-79510657 Msa1217260:intron 25.0%
! AGTATTTAGCAAGGTAAAAA+TGG + chr8_1:79510808-79510827 None:intergenic 25.0%
! GAGTATAATAGTATTTAGCA+AGG + chr8_1:79510817-79510836 None:intergenic 25.0%
!! AAATTTTATGCCAATTAGTG+TGG + chr8_1:79510954-79510973 None:intergenic 25.0%
! ATGTGTGTAATTATCTACAA+AGG - chr8_1:79511256-79511275 Msa1217260:CDS 25.0%
! AGATTGAATAATTAACCAAG+TGG - chr8_1:79511351-79511370 Msa1217260:five_prime_UTR 25.0%
!! AAATCTATCACATCTTGTTT+GGG + chr8_1:79511434-79511453 None:intergenic 25.0%
! AAAATCTATCACATCTTGTT+TGG + chr8_1:79511435-79511454 None:intergenic 25.0%
ATGTCTTGCTCAGTAAAAAT+TGG + chr8_1:79509524-79509543 None:intergenic 30.0%
! AATTTTTACTGAGCAAGACA+TGG - chr8_1:79509523-79509542 Msa1217260:three_prime_UTR 30.0%
!! CTAAGTTTGATTTGATCCTA+AGG - chr8_1:79509630-79509649 Msa1217260:three_prime_UTR 30.0%
ATCATGCAAAACTTACACAA+AGG + chr8_1:79509753-79509772 None:intergenic 30.0%
! CTAGCTGATAGAATTAGTTT+CGG + chr8_1:79510002-79510021 None:intergenic 30.0%
AGACACTAAGGATATTGTAA+GGG - chr8_1:79510216-79510235 Msa1217260:intron 30.0%
GAAAAGCGGTATTAATCAAA+TGG + chr8_1:79510402-79510421 None:intergenic 30.0%
GAATAAGGTCTTAATATGGT+GGG + chr8_1:79510562-79510581 None:intergenic 30.0%
AGAATAAGGTCTTAATATGG+TGG + chr8_1:79510563-79510582 None:intergenic 30.0%
AACTTTCTTCGAATCTACTT+GGG + chr8_1:79511096-79511115 None:intergenic 30.0%
! ATTAGTGTGGTACATGATTT+TGG - chr8_1:79511301-79511320 Msa1217260:five_prime_UTR 30.0%
AATATGACATGCTATGATAC+TGG + chr8_1:79511390-79511409 None:intergenic 30.0%
ATGTCTTGCTCAGTAAAAAT+TGG + chr8_1:79509524-79509543 None:intergenic 30.0%
! AATTTTTACTGAGCAAGACA+TGG - chr8_1:79509523-79509542 Msa1217260:three_prime_UTR 30.0%
!! CTAAGTTTGATTTGATCCTA+AGG - chr8_1:79509630-79509649 Msa1217260:three_prime_UTR 30.0%
ATCATGCAAAACTTACACAA+AGG + chr8_1:79509753-79509772 None:intergenic 30.0%
! CTAGCTGATAGAATTAGTTT+CGG + chr8_1:79510002-79510021 None:intergenic 30.0%
AGACACTAAGGATATTGTAA+GGG - chr8_1:79510216-79510235 Msa1217260:intron 30.0%
GAAAAGCGGTATTAATCAAA+TGG + chr8_1:79510402-79510421 None:intergenic 30.0%
GAATAAGGTCTTAATATGGT+GGG + chr8_1:79510562-79510581 None:intergenic 30.0%
AGAATAAGGTCTTAATATGG+TGG + chr8_1:79510563-79510582 None:intergenic 30.0%
AACTTTCTTCGAATCTACTT+GGG + chr8_1:79511096-79511115 None:intergenic 30.0%
! ATTAGTGTGGTACATGATTT+TGG - chr8_1:79511301-79511320 Msa1217260:five_prime_UTR 30.0%
AATATGACATGCTATGATAC+TGG + chr8_1:79511390-79511409 None:intergenic 30.0%
! TATAGAATGGTGACTAGCTA+AGG + chr8_1:79509470-79509489 None:intergenic 35.0%
! GTTGAAGATGATTTGTACTC+AGG + chr8_1:79509563-79509582 None:intergenic 35.0%
GTACAAATCATCTTCAACTC+CGG - chr8_1:79509565-79509584 Msa1217260:three_prime_UTR 35.0%
TTTCCTAGTAGTTCCTACTA+TGG - chr8_1:79509913-79509932 Msa1217260:CDS 35.0%
ATTCCATAGTAGGAACTACT+AGG + chr8_1:79509919-79509938 None:intergenic 35.0%
GTAGTTCCTACTATGGAATA+TGG - chr8_1:79509920-79509939 Msa1217260:CDS 35.0%
ACATGACCATATTCCATAGT+AGG + chr8_1:79509929-79509948 None:intergenic 35.0%
! TTTGAAGTATGCATCTCTCT+CGG - chr8_1:79509948-79509967 Msa1217260:intron 35.0%
CAGCTAGACTCAATTTCAAT+AGG - chr8_1:79510015-79510034 Msa1217260:intron 35.0%
GAGACACTAAGGATATTGTA+AGG - chr8_1:79510215-79510234 Msa1217260:intron 35.0%
! GAAAGACTCTACTCTTTTGA+AGG - chr8_1:79510484-79510503 Msa1217260:intron 35.0%
!! CTCTTTTGAAGGCTATAAAG+AGG - chr8_1:79510495-79510514 Msa1217260:intron 35.0%
GGTCTTAAACAAAGTCATCA+TGG + chr8_1:79510530-79510549 None:intergenic 35.0%
! TAATATGGTGGGAACATATG+TGG + chr8_1:79510551-79510570 None:intergenic 35.0%
!!! AGAAGTTTGGTTTTGAGGTT+TGG + chr8_1:79510732-79510751 None:intergenic 35.0%
GATTAAATGGAGGAGAAGTT+TGG + chr8_1:79510745-79510764 None:intergenic 35.0%
TTCTCCTCCATTTAATCTTC+TGG - chr8_1:79510748-79510767 Msa1217260:intron 35.0%
TCTCCTCCATTTAATCTTCT+GGG - chr8_1:79510749-79510768 Msa1217260:intron 35.0%
TTATCCAATGATTCTCTTGC+AGG - chr8_1:79510855-79510874 Msa1217260:intron 35.0%
! TGTTGCATATTTGGGTTTGA+AGG - chr8_1:79510921-79510940 Msa1217260:intron 35.0%
! GTTGCATATTTGGGTTTGAA+GGG - chr8_1:79510922-79510941 Msa1217260:intron 35.0%
TGCAAAACTTGTCATAGATG+TGG + chr8_1:79510978-79510997 None:intergenic 35.0%
! ACATCTATGACAAGTTTTGC+AGG - chr8_1:79510977-79510996 Msa1217260:intron 35.0%
CAACTTTCTTCGAATCTACT+TGG + chr8_1:79511097-79511116 None:intergenic 35.0%
AGTAGATTCGAAGAAAGTTG+TGG - chr8_1:79511097-79511116 Msa1217260:CDS 35.0%
! TATAGAATGGTGACTAGCTA+AGG + chr8_1:79509470-79509489 None:intergenic 35.0%
! GTTGAAGATGATTTGTACTC+AGG + chr8_1:79509563-79509582 None:intergenic 35.0%
GTACAAATCATCTTCAACTC+CGG - chr8_1:79509565-79509584 Msa1217260:three_prime_UTR 35.0%
TTTCCTAGTAGTTCCTACTA+TGG - chr8_1:79509913-79509932 Msa1217260:CDS 35.0%
ATTCCATAGTAGGAACTACT+AGG + chr8_1:79509919-79509938 None:intergenic 35.0%
GTAGTTCCTACTATGGAATA+TGG - chr8_1:79509920-79509939 Msa1217260:CDS 35.0%
ACATGACCATATTCCATAGT+AGG + chr8_1:79509929-79509948 None:intergenic 35.0%
! TTTGAAGTATGCATCTCTCT+CGG - chr8_1:79509948-79509967 Msa1217260:intron 35.0%
CAGCTAGACTCAATTTCAAT+AGG - chr8_1:79510015-79510034 Msa1217260:intron 35.0%
GAGACACTAAGGATATTGTA+AGG - chr8_1:79510215-79510234 Msa1217260:intron 35.0%
! GAAAGACTCTACTCTTTTGA+AGG - chr8_1:79510484-79510503 Msa1217260:intron 35.0%
!! CTCTTTTGAAGGCTATAAAG+AGG - chr8_1:79510495-79510514 Msa1217260:intron 35.0%
GGTCTTAAACAAAGTCATCA+TGG + chr8_1:79510530-79510549 None:intergenic 35.0%
! TAATATGGTGGGAACATATG+TGG + chr8_1:79510551-79510570 None:intergenic 35.0%
!!! AGAAGTTTGGTTTTGAGGTT+TGG + chr8_1:79510732-79510751 None:intergenic 35.0%
GATTAAATGGAGGAGAAGTT+TGG + chr8_1:79510745-79510764 None:intergenic 35.0%
TTCTCCTCCATTTAATCTTC+TGG - chr8_1:79510748-79510767 Msa1217260:intron 35.0%
TCTCCTCCATTTAATCTTCT+GGG - chr8_1:79510749-79510768 Msa1217260:intron 35.0%
TTATCCAATGATTCTCTTGC+AGG - chr8_1:79510855-79510874 Msa1217260:intron 35.0%
! TGTTGCATATTTGGGTTTGA+AGG - chr8_1:79510921-79510940 Msa1217260:intron 35.0%
! GTTGCATATTTGGGTTTGAA+GGG - chr8_1:79510922-79510941 Msa1217260:intron 35.0%
TGCAAAACTTGTCATAGATG+TGG + chr8_1:79510978-79510997 None:intergenic 35.0%
! ACATCTATGACAAGTTTTGC+AGG - chr8_1:79510977-79510996 Msa1217260:intron 35.0%
CAACTTTCTTCGAATCTACT+TGG + chr8_1:79511097-79511116 None:intergenic 35.0%
AGTAGATTCGAAGAAAGTTG+TGG - chr8_1:79511097-79511116 Msa1217260:CDS 35.0%
GCATGTTGCTACAACTTTCT+TGG - chr8_1:79509370-79509389 Msa1217260:three_prime_UTR 40.0%
TAGATATGGACTTGTGAACG+AGG + chr8_1:79509403-79509422 None:intergenic 40.0%
! ATGGTGACTAGCTAAGGATA+AGG + chr8_1:79509464-79509483 None:intergenic 40.0%
CTGCAAACAACAGAAACCTT+AGG + chr8_1:79509649-79509668 None:intergenic 40.0%
TCAGTTGTTGTGATGGTTAC+TGG - chr8_1:79509680-79509699 Msa1217260:three_prime_UTR 40.0%
TGCAAAACTTACACAAAGGC+TGG + chr8_1:79509749-79509768 None:intergenic 40.0%
!!! TGGTTTTGAGGTTTGGCTTT+CGG + chr8_1:79510725-79510744 None:intergenic 40.0%
CATCCCAGAAGATTAAATGG+AGG + chr8_1:79510755-79510774 None:intergenic 40.0%
!! CCATTTAATCTTCTGGGATG+CGG - chr8_1:79510755-79510774 Msa1217260:intron 40.0%
ATCACCTGCAAGAGAATCAT+TGG + chr8_1:79510862-79510881 None:intergenic 40.0%
ATTCTCTTGCAGGTGATGTT+GGG - chr8_1:79510865-79510884 Msa1217260:intron 40.0%
AGGGAAACAACCACACTAAT+TGG - chr8_1:79510941-79510960 Msa1217260:intron 40.0%
! GACAAGTTTTGCAGGCATAT+TGG - chr8_1:79510985-79511004 Msa1217260:intron 40.0%
TTGTCACTCTGTTGCTCATT+TGG - chr8_1:79511040-79511059 Msa1217260:intron 40.0%
!!! GGTTTTAAATCACAGCCACT+TGG + chr8_1:79511369-79511388 None:intergenic 40.0%
GCATGTTGCTACAACTTTCT+TGG - chr8_1:79509370-79509389 Msa1217260:three_prime_UTR 40.0%
TAGATATGGACTTGTGAACG+AGG + chr8_1:79509403-79509422 None:intergenic 40.0%
! ATGGTGACTAGCTAAGGATA+AGG + chr8_1:79509464-79509483 None:intergenic 40.0%
CTGCAAACAACAGAAACCTT+AGG + chr8_1:79509649-79509668 None:intergenic 40.0%
TCAGTTGTTGTGATGGTTAC+TGG - chr8_1:79509680-79509699 Msa1217260:three_prime_UTR 40.0%
TGCAAAACTTACACAAAGGC+TGG + chr8_1:79509749-79509768 None:intergenic 40.0%
!!! TGGTTTTGAGGTTTGGCTTT+CGG + chr8_1:79510725-79510744 None:intergenic 40.0%
CATCCCAGAAGATTAAATGG+AGG + chr8_1:79510755-79510774 None:intergenic 40.0%
!! CCATTTAATCTTCTGGGATG+CGG - chr8_1:79510755-79510774 Msa1217260:intron 40.0%
ATCACCTGCAAGAGAATCAT+TGG + chr8_1:79510862-79510881 None:intergenic 40.0%
ATTCTCTTGCAGGTGATGTT+GGG - chr8_1:79510865-79510884 Msa1217260:intron 40.0%
AGGGAAACAACCACACTAAT+TGG - chr8_1:79510941-79510960 Msa1217260:intron 40.0%
! GACAAGTTTTGCAGGCATAT+TGG - chr8_1:79510985-79511004 Msa1217260:intron 40.0%
TTGTCACTCTGTTGCTCATT+TGG - chr8_1:79511040-79511059 Msa1217260:intron 40.0%
!!! GGTTTTAAATCACAGCCACT+TGG + chr8_1:79511369-79511388 None:intergenic 40.0%
! TCTGTTGTTTGCAGCATCAG+TGG - chr8_1:79509655-79509674 Msa1217260:three_prime_UTR 45.0%
AGTGGCATCAGTTGTTGTGA+TGG - chr8_1:79509673-79509692 Msa1217260:three_prime_UTR 45.0%
GGTGAGTATCTAAACTTGGC+TGG + chr8_1:79509728-79509747 None:intergenic 45.0%
GGCTGGTGAGTATCTAAACT+TGG + chr8_1:79509732-79509751 None:intergenic 45.0%
!! TTTGAGGTTTGGCTTTCGGA+TGG + chr8_1:79510721-79510740 None:intergenic 45.0%
!!! GGAGGAGAAGTTTGGTTTTG+AGG + chr8_1:79510737-79510756 None:intergenic 45.0%
CCGCATCCCAGAAGATTAAA+TGG + chr8_1:79510758-79510777 None:intergenic 45.0%
GATTCTCTTGCAGGTGATGT+TGG - chr8_1:79510864-79510883 Msa1217260:intron 45.0%
TTCTCTTGCAGGTGATGTTG+GGG - chr8_1:79510866-79510885 Msa1217260:intron 45.0%
! GGGATATTAGCTTCAGCAAC+AGG - chr8_1:79510886-79510905 Msa1217260:intron 45.0%
!! AGCTGGGAGTGTTGCATATT+TGG - chr8_1:79510912-79510931 Msa1217260:intron 45.0%
!! GCTGGGAGTGTTGCATATTT+GGG - chr8_1:79510913-79510932 Msa1217260:intron 45.0%
AAACAATCCCACTGCTACAG+AGG + chr8_1:79511013-79511032 None:intergenic 45.0%
TCTGTAGCAGTGGGATTGTT+TGG - chr8_1:79511012-79511031 Msa1217260:intron 45.0%
! TCTGTTGTTTGCAGCATCAG+TGG - chr8_1:79509655-79509674 Msa1217260:three_prime_UTR 45.0%
AGTGGCATCAGTTGTTGTGA+TGG - chr8_1:79509673-79509692 Msa1217260:three_prime_UTR 45.0%
GGTGAGTATCTAAACTTGGC+TGG + chr8_1:79509728-79509747 None:intergenic 45.0%
GGCTGGTGAGTATCTAAACT+TGG + chr8_1:79509732-79509751 None:intergenic 45.0%
!! TTTGAGGTTTGGCTTTCGGA+TGG + chr8_1:79510721-79510740 None:intergenic 45.0%
!!! GGAGGAGAAGTTTGGTTTTG+AGG + chr8_1:79510737-79510756 None:intergenic 45.0%
CCGCATCCCAGAAGATTAAA+TGG + chr8_1:79510758-79510777 None:intergenic 45.0%
GATTCTCTTGCAGGTGATGT+TGG - chr8_1:79510864-79510883 Msa1217260:intron 45.0%
TTCTCTTGCAGGTGATGTTG+GGG - chr8_1:79510866-79510885 Msa1217260:intron 45.0%
! GGGATATTAGCTTCAGCAAC+AGG - chr8_1:79510886-79510905 Msa1217260:intron 45.0%
!! AGCTGGGAGTGTTGCATATT+TGG - chr8_1:79510912-79510931 Msa1217260:intron 45.0%
!! GCTGGGAGTGTTGCATATTT+GGG - chr8_1:79510913-79510932 Msa1217260:intron 45.0%
AAACAATCCCACTGCTACAG+AGG + chr8_1:79511013-79511032 None:intergenic 45.0%
TCTGTAGCAGTGGGATTGTT+TGG - chr8_1:79511012-79511031 Msa1217260:intron 45.0%
!! TAAATAAATAAATGATATAT+TGG + chr8_1:79510353-79510372 None:intergenic 5.0%
!! TTTGTTTATTAAATTTAATT+AGG + chr8_1:79510430-79510449 None:intergenic 5.0%
!! TAAATAAATAAATGATATAT+TGG + chr8_1:79510353-79510372 None:intergenic 5.0%
!! TTTGTTTATTAAATTTAATT+AGG + chr8_1:79510430-79510449 None:intergenic 5.0%
GAGCAAGACATGGCTTCTAC+TGG - chr8_1:79509533-79509552 Msa1217260:three_prime_UTR 50.0%
ATCATCTTCAACTCCGGCTC+CGG - chr8_1:79509571-79509590 Msa1217260:three_prime_UTR 50.0%
TGGCTGCATTCTCTGTTGCT+GGG - chr8_1:79510658-79510677 Msa1217260:intron 50.0%
! TATTGGTGCCTCTGTAGCAG+TGG - chr8_1:79511002-79511021 Msa1217260:intron 50.0%
! ATTGGTGCCTCTGTAGCAGT+GGG - chr8_1:79511003-79511022 Msa1217260:intron 50.0%
GAGCAAGACATGGCTTCTAC+TGG - chr8_1:79509533-79509552 Msa1217260:three_prime_UTR 50.0%
ATCATCTTCAACTCCGGCTC+CGG - chr8_1:79509571-79509590 Msa1217260:three_prime_UTR 50.0%
TGGCTGCATTCTCTGTTGCT+GGG - chr8_1:79510658-79510677 Msa1217260:intron 50.0%
! TATTGGTGCCTCTGTAGCAG+TGG - chr8_1:79511002-79511021 Msa1217260:intron 50.0%
! ATTGGTGCCTCTGTAGCAGT+GGG - chr8_1:79511003-79511022 Msa1217260:intron 50.0%
GTGGCTGCATTCTCTGTTGC+TGG - chr8_1:79510657-79510676 Msa1217260:intron 55.0%
CTTCAGCAACAGGCACAGCT+GGG - chr8_1:79510896-79510915 Msa1217260:intron 55.0%
GTGGCTGCATTCTCTGTTGC+TGG - chr8_1:79510657-79510676 Msa1217260:intron 55.0%
CTTCAGCAACAGGCACAGCT+GGG - chr8_1:79510896-79510915 Msa1217260:intron 55.0%
ACACCCGAAGCCGAAGAAGC+CGG + chr8_1:79509599-79509618 None:intergenic 60.0%
GCTTCAGCAACAGGCACAGC+TGG - chr8_1:79510895-79510914 Msa1217260:intron 60.0%
ACACCCGAAGCCGAAGAAGC+CGG + chr8_1:79509599-79509618 None:intergenic 60.0%
GCTTCAGCAACAGGCACAGC+TGG - chr8_1:79510895-79510914 Msa1217260:intron 60.0%
TTCAACTCCGGCTCCGGCTC+CGG - chr8_1:79509577-79509596 Msa1217260:three_prime_UTR 65.0%
GAAGCCGAAGAAGCCGGAGC+CGG + chr8_1:79509593-79509612 None:intergenic 65.0%
GGCTCCGGCTTCTTCGGCTT+CGG - chr8_1:79509592-79509611 Msa1217260:three_prime_UTR 65.0%
GCTCCGGCTTCTTCGGCTTC+GGG - chr8_1:79509593-79509612 Msa1217260:three_prime_UTR 65.0%
TTCAACTCCGGCTCCGGCTC+CGG - chr8_1:79509577-79509596 Msa1217260:three_prime_UTR 65.0%
GAAGCCGAAGAAGCCGGAGC+CGG + chr8_1:79509593-79509612 None:intergenic 65.0%
GGCTCCGGCTTCTTCGGCTT+CGG - chr8_1:79509592-79509611 Msa1217260:three_prime_UTR 65.0%
GCTCCGGCTTCTTCGGCTTC+GGG - chr8_1:79509593-79509612 Msa1217260:three_prime_UTR 65.0%
GAAGAAGCCGGAGCCGGAGC+CGG + chr8_1:79509587-79509606 None:intergenic 70.0%
GGCTCCGGCTCCGGCTTCTT+CGG - chr8_1:79509586-79509605 Msa1217260:three_prime_UTR 70.0%
GAAGAAGCCGGAGCCGGAGC+CGG + chr8_1:79509587-79509606 None:intergenic 70.0%
GGCTCCGGCTCCGGCTTCTT+CGG - chr8_1:79509586-79509605 Msa1217260:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 79509354 79511486 79509354 ID=Msa1217260;Name=Msa1217260
chr8_1 mRNA 79509354 79511486 79509354 ID=Msa1217260-mRNA-1;Parent=Msa1217260;Name=Msa1217260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=188|1|1|1|1|1|3|385|188
chr8_1 exon 79509354 79509963 79509354 ID=Msa1217260-mRNA-1:exon:27757;Parent=Msa1217260-mRNA-1
chr8_1 exon 79510064 79510190 79510064 ID=Msa1217260-mRNA-1:exon:27756;Parent=Msa1217260-mRNA-1
chr8_1 exon 79511084 79511486 79511084 ID=Msa1217260-mRNA-1:exon:27755;Parent=Msa1217260-mRNA-1
chr8_1 five_prime_UTR 79511299 79511486 79511299 ID=Msa1217260-mRNA-1:five_prime_utr;Parent=Msa1217260-mRNA-1
chr8_1 CDS 79511084 79511298 79511084 ID=Msa1217260-mRNA-1:cds;Parent=Msa1217260-mRNA-1
chr8_1 CDS 79510064 79510190 79510064 ID=Msa1217260-mRNA-1:cds;Parent=Msa1217260-mRNA-1
chr8_1 CDS 79509739 79509963 79509739 ID=Msa1217260-mRNA-1:cds;Parent=Msa1217260-mRNA-1
chr8_1 three_prime_UTR 79509354 79509738 79509354 ID=Msa1217260-mRNA-1:three_prime_utr;Parent=Msa1217260-mRNA-1
Gene Sequence

>Msa1217260

ATGGCTTCTACTGGTGATCCTGAGTACAAATCATCTTCAACTCCGGCTCCGGCTCCGGCTTCTTCGGCTTCGGGTGTTGTTGATCACTCTAAGTTTGATTTGATCCTAAGGTTTCTGTTGTTTGCAGCATCAGTGGCATCAGTTGTTGTGATGGTTACTGGTAATCAAACTGAATATTCTCGACCAGCCAAGTTTAGATACTCACCAGCCTTTGTATATTTTGTGGCTGCATTCTCTGTTGCTGGGCTTTATAGTATCATTACAACTTTTGTATCACTCTCTGCCATCCGAAAGCCAAACCTCAAAACCAAACTTCTCCTCCATTTAATCTTCTGGGATGCGGTGATGTTGGGGATATTAGCTTCAGCAACAGGCACAGCTGGGAGTGTTGCATATTTGGGTTTGAAGGGAAACAACCACACTAATTGGCATAAAATTTGCCACATCTATGACAAGTTTTGCAGGCATATTGGTGCCTCTGTAGCAGTGGGATTGTTTGGTAGCATTGTCACTCTGTTGCTCATTTGGATTTCAGCTCACAGCATTCATAGTCGAGTTCCCAAGTAG

Protein sequence

>Msa1217260

MASTGDPEYKSSSTPAPAPASSASGVVDHSKFDLILRFLLFAASVASVVVMVTGNQTEYSRPAKFRYSPAFVYFVAAFSVAGLYSIITTFVSLSAIRKPNLKTKLLLHLIFWDAVMLGILASATGTAGSVAYLGLKGNNHTNWHKICHIYDKFCRHIGASVAVGLFGSIVTLLLIWISAHSIHSRVPK*