AlfalfaGEDB | Msa1217260

M. sativa cultivar zhongmu-4 / Msa1217260

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
PFAM: PF04535.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217260	XP_004508310.1	79.688	192	35	2	1	188	1	192	2.82e-103	305

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217260	sp\|C6SVQ5\|CSPL7_SOYBN	70.500	200	40	4	1	188	1	193	4.87e-92	269

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa1217260	0.876110	1.811058e-68	-8.615850e-47
Msa0002690	Msa1217260	-0.817369	3.416813e-52	-8.615850e-47
Msa0002700	Msa1217260	-0.816378	5.703012e-52	-8.615850e-47
Msa0004180	Msa1217260	-0.842554	2.409297e-58	-8.615850e-47
Msa0005910	Msa1217260	0.814660	1.375533e-51	-8.615850e-47
Msa0021570	Msa1217260	-0.816450	5.495732e-52	-8.615850e-47
Msa0026420	Msa1217260	0.848835	4.757364e-60	-8.615850e-47
Msa0027020	Msa1217260	-0.879414	1.270356e-69	-8.615850e-47
Msa0028940	Msa1217260	-0.816257	6.070881e-52	-8.615850e-47
Msa0030050	Msa1217260	0.809389	1.938730e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217260	MtrunA17_Chr4g0066711	91.099	191	10	2	1	188	1	187	1.09e-105	301
Msa1217260	MtrunA17_Chr7g0268681	33.962	159	92	4	32	182	29	182	6.70e-24	93.2
Msa1217260	MtrunA17_Chr2g0286341	33.735	166	93	3	34	185	25	187	9.78e-22	87.4
Msa1217260	MtrunA17_Chr4g0066721	33.566	143	79	3	33	161	34	174	1.52e-19	82.0
Msa1217260	MtrunA17_Chr4g0021111	33.548	155	88	4	34	184	10	153	1.89e-17	75.5
Msa1217260	MtrunA17_Chr8g0381001	28.736	174	104	4	1	161	1	167	2.16e-16	73.6
Msa1217260	MtrunA17_Chr4g0042551	30.864	162	99	5	30	182	57	214	4.66e-16	73.2
Msa1217260	MtrunA17_Chr7g0217691	31.707	164	101	6	30	185	26	186	5.68e-15	69.7
Msa1217260	MtrunA17_Chr5g0417761	35.484	155	86	5	30	172	26	178	2.67e-14	67.8
Msa1217260	MtrunA17_Chr7g0251531	31.169	154	97	4	10	155	5	157	7.91e-14	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217260	AT3G06390.1	47.977	173	75	3	1	158	1	173	1.39e-50	162
Msa1217260	AT4G15610.1	55.944	143	54	2	33	166	30	172	3.49e-49	158
Msa1217260	AT4G15610.2	62.766	94	35	0	73	166	23	116	7.35e-37	125
Msa1217260	AT4G15630.1	30.247	162	97	2	32	179	27	186	3.92e-20	83.6
Msa1217260	AT5G15290.1	32.353	136	83	4	33	161	29	162	3.50e-17	75.9
Msa1217260	AT4G15620.1	27.950	161	100	2	33	179	28	186	8.85e-17	74.7
Msa1217260	AT1G14160.1	30.128	156	101	4	30	179	49	202	7.24e-15	70.1
Msa1217260	AT2G36100.1	30.882	136	87	3	32	161	48	182	8.22e-13	64.7
Msa1217260	AT1G03700.1	29.412	153	96	3	34	182	11	155	5.61e-12	61.6

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Find 61 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTATCACATCTTGTT+TGG	0.283680	8_1:+79509386	None:intergenic
AAACAATCCCACTGCTACAG+AGG	0.565188	8_1:+79509808	None:intergenic
AAATCTATCACATCTTGTTT+GGG	0.404170	8_1:+79509387	None:intergenic
AACTTTCTTCGAATCTACTT+GGG	0.503750	8_1:+79509725	None:intergenic
AATATCAGCTATTTATAGAA+TGG	0.413420	8_1:+79511338	None:intergenic
AATATGACATGCTATGATAC+TGG	0.472959	8_1:+79509431	None:intergenic
AATTAAAATGCTCTTTAAAG+AGG	0.431280	8_1:+79509361	None:intergenic
ACACCCGAAGCCGAAGAAGC+CGG	0.514862	8_1:+79511222	None:intergenic
AGATTGAATAATTAACCAAG+TGG	0.664798	8_1:-79509467	Msa1217260:three_prime_UTR
AGCTGGGAGTGTTGCATATT+TGG	0.167909	8_1:-79509906	Msa1217260:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGTCTTGCTCAGTAAAAAT+TGG	+	chr8_1:79509524-79509543	None:intergenic	30.0%
ATCATGCAAAACTTACACAA+AGG	+	chr8_1:79509753-79509772	None:intergenic	30.0%
AGACACTAAGGATATTGTAA+GGG	-	chr8_1:79510216-79510235	Msa1217260:intron	30.0%
GAAAAGCGGTATTAATCAAA+TGG	+	chr8_1:79510402-79510421	None:intergenic	30.0%
GAATAAGGTCTTAATATGGT+GGG	+	chr8_1:79510562-79510581	None:intergenic	30.0%
AGAATAAGGTCTTAATATGG+TGG	+	chr8_1:79510563-79510582	None:intergenic	30.0%
AACTTTCTTCGAATCTACTT+GGG	+	chr8_1:79511096-79511115	None:intergenic	30.0%
AATATGACATGCTATGATAC+TGG	+	chr8_1:79511390-79511409	None:intergenic	30.0%
ATGTCTTGCTCAGTAAAAAT+TGG	+	chr8_1:79509524-79509543	None:intergenic	30.0%
ATCATGCAAAACTTACACAA+AGG	+	chr8_1:79509753-79509772	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	79509354	79511486	79509354	ID=Msa1217260;Name=Msa1217260
chr8_1	mRNA	79509354	79511486	79509354	ID=Msa1217260-mRNA-1;Parent=Msa1217260;Name=Msa1217260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=188\|1\|1\|1\|1\|1\|3\|385\|188
chr8_1	exon	79509354	79509963	79509354	ID=Msa1217260-mRNA-1:exon:27757;Parent=Msa1217260-mRNA-1
chr8_1	exon	79510064	79510190	79510064	ID=Msa1217260-mRNA-1:exon:27756;Parent=Msa1217260-mRNA-1
chr8_1	exon	79511084	79511486	79511084	ID=Msa1217260-mRNA-1:exon:27755;Parent=Msa1217260-mRNA-1
chr8_1	five_prime_UTR	79511299	79511486	79511299	ID=Msa1217260-mRNA-1:five_prime_utr;Parent=Msa1217260-mRNA-1
chr8_1	CDS	79511084	79511298	79511084	ID=Msa1217260-mRNA-1:cds;Parent=Msa1217260-mRNA-1
chr8_1	CDS	79510064	79510190	79510064	ID=Msa1217260-mRNA-1:cds;Parent=Msa1217260-mRNA-1
chr8_1	CDS	79509739	79509963	79509739	ID=Msa1217260-mRNA-1:cds;Parent=Msa1217260-mRNA-1
chr8_1	three_prime_UTR	79509354	79509738	79509354	ID=Msa1217260-mRNA-1:three_prime_utr;Parent=Msa1217260-mRNA-1

Gene Sequence

>Msa1217260

ATGGCTTCTACTGGTGATCCTGAGTACAAATCATCTTCAACTCCGGCTCCGGCTCCGGCTTCTTCGGCTTCGGGTGTTGTTGATCACTCTAAGTTTGATTTGATCCTAAGGTTTCTGTTGTTTGCAGCATCAGTGGCATCAGTTGTTGTGATGGTTACTGGTAATCAAACTGAATATTCTCGACCAGCCAAGTTTAGATACTCACCAGCCTTTGTATATTTTGTGGCTGCATTCTCTGTTGCTGGGCTTTATAGTATCATTACAACTTTTGTATCACTCTCTGCCATCCGAAAGCCAAACCTCAAAACCAAACTTCTCCTCCATTTAATCTTCTGGGATGCGGTGATGTTGGGGATATTAGCTTCAGCAACAGGCACAGCTGGGAGTGTTGCATATTTGGGTTTGAAGGGAAACAACCACACTAATTGGCATAAAATTTGCCACATCTATGACAAGTTTTGCAGGCATATTGGTGCCTCTGTAGCAGTGGGATTGTTTGGTAGCATTGTCACTCTGTTGCTCATTTGGATTTCAGCTCACAGCATTCATAGTCGAGTTCCCAAGTAG

Protein sequence

>Msa1217260

MASTGDPEYKSSSTPAPAPASSASGVVDHSKFDLILRFLLFAASVASVVVMVTGNQTEYSRPAKFRYSPAFVYFVAAFSVAGLYSIITTFVSLSAIRKPNLKTKLLLHLIFWDAVMLGILASATGTAGSVAYLGLKGNNHTNWHKICHIYDKFCRHIGASVAVGLFGSIVTLLLIWISAHSIHSRVPK*