Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344680 | XP_013469959.1 | 99.778 | 450 | 1 | 0 | 1 | 450 | 1 | 450 | 0.0 | 937 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344680 | sp|P33629|TBA_PRUDU | 98.000 | 450 | 9 | 0 | 1 | 450 | 1 | 450 | 0.0 | 920 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344680 | A0A072VQC8 | 99.778 | 450 | 1 | 0 | 1 | 450 | 1 | 450 | 0.0 | 937 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041450 | Msa1344680 | 0.972621 | 4.583868e-135 | -8.615850e-47 |
| Msa0089080 | Msa1344680 | 0.806744 | 7.089536e-50 | -8.615850e-47 |
| Msa1344680 | Msa1447900 | 0.814937 | 1.194462e-51 | -8.615850e-47 |
| Msa1344680 | Msa1455910 | 0.822997 | 1.755471e-53 | -8.615850e-47 |
| Msa1344680 | Msa1460970 | 0.837920 | 3.908449e-57 | -8.615850e-47 |
| Msa0624930 | Msa1344680 | 0.819020 | 1.446130e-52 | -8.615850e-47 |
| Msa0732970 | Msa1344680 | 0.802526 | 5.380709e-49 | -8.615850e-47 |
| Msa0773960 | Msa1344680 | 0.804695 | 1.909543e-49 | -8.615850e-47 |
| Msa0822740 | Msa1344680 | 0.811695 | 6.156518e-51 | -8.615850e-47 |
| Msa0135890 | Msa1344680 | 0.809192 | 2.136289e-50 | -8.615850e-47 |
| Msa0136580 | Msa1344680 | -0.824339 | 8.518393e-54 | -8.615850e-47 |
| Msa0215350 | Msa1344680 | 0.832409 | 9.610025e-56 | -8.615850e-47 |
| Msa1240060 | Msa1344680 | 0.857868 | 1.217409e-62 | -8.615850e-47 |
| Msa1281370 | Msa1344680 | 0.863014 | 3.367576e-64 | -8.615850e-47 |
| Msa1320530 | Msa1344680 | 0.840024 | 1.115457e-57 | -8.615850e-47 |
| Msa0380590 | Msa1344680 | 0.805050 | 1.609579e-49 | -8.615850e-47 |
| Msa0416390 | Msa1344680 | 0.802023 | 6.827924e-49 | -8.615850e-47 |
| Msa0428330 | Msa1344680 | -0.827328 | 1.661969e-54 | -8.615850e-47 |
| Msa0985040 | Msa1344680 | -0.807999 | 3.841003e-50 | -8.615850e-47 |
| Msa0999590 | Msa1344680 | -0.803795 | 2.938735e-49 | -8.615850e-47 |
| Msa1040730 | Msa1344680 | 0.832534 | 8.950016e-56 | -8.615850e-47 |
| Msa1052030 | Msa1344680 | -0.801574 | 8.445899e-49 | -8.615850e-47 |
| Msa0264240 | Msa1344680 | -0.806629 | 7.498515e-50 | -8.615850e-47 |
| Msa0290800 | Msa1344680 | 0.802951 | 4.397242e-49 | -8.615850e-47 |
| Msa0339560 | Msa1344680 | -0.809855 | 1.539720e-50 | -8.615850e-47 |
| Msa1125450 | Msa1344680 | -0.800534 | 1.378051e-48 | -8.615850e-47 |
| Msa1127880 | Msa1344680 | 0.828925 | 6.853611e-55 | -8.615850e-47 |
| Msa1165880 | Msa1344680 | 0.805549 | 1.265418e-49 | -8.615850e-47 |
| Msa1211260 | Msa1344680 | -0.800787 | 1.223197e-48 | -8.615850e-47 |
| Msa0500420 | Msa1344680 | 0.803983 | 2.686388e-49 | -8.615850e-47 |
| Msa0529360 | Msa1344680 | 0.815981 | 6.997364e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344680 | MtrunA17_Chr1g0206881 | 99.778 | 450 | 1 | 0 | 1 | 450 | 1 | 450 | 0.0 | 937 |
| Msa1344680 | MtrunA17_Chr3g0140821 | 97.773 | 449 | 10 | 0 | 1 | 449 | 1 | 449 | 0.0 | 914 |
| Msa1344680 | MtrunA17_Chr4g0054511 | 97.118 | 451 | 12 | 1 | 1 | 450 | 1 | 451 | 0.0 | 910 |
| Msa1344680 | MtrunA17_Chr8g0378821 | 92.644 | 435 | 32 | 0 | 1 | 435 | 1 | 435 | 0.0 | 832 |
| Msa1344680 | MtrunA17_Chr7g0253411 | 91.196 | 443 | 38 | 1 | 1 | 443 | 1 | 442 | 0.0 | 827 |
| Msa1344680 | MtrunA17_Chr6g0461281 | 83.149 | 451 | 72 | 2 | 1 | 450 | 1 | 448 | 0.0 | 776 |
| Msa1344680 | MtrunA17_Chr2g0300491 | 72.606 | 449 | 118 | 2 | 1 | 449 | 1 | 444 | 0.0 | 652 |
| Msa1344680 | MtrunA17_Chr2g0300671 | 72.809 | 445 | 116 | 2 | 1 | 445 | 1 | 440 | 0.0 | 651 |
| Msa1344680 | MtrunA17_Chr4g0051631 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 3.59e-124 | 368 |
| Msa1344680 | MtrunA17_Chr7g0255791 | 42.105 | 437 | 237 | 4 | 1 | 434 | 1 | 424 | 1.07e-123 | 367 |
| Msa1344680 | MtrunA17_Chr3g0142731 | 40.961 | 437 | 244 | 3 | 1 | 434 | 1 | 426 | 1.69e-123 | 366 |
| Msa1344680 | MtrunA17_Chr4g0008401 | 42.105 | 437 | 237 | 3 | 1 | 434 | 1 | 424 | 2.91e-123 | 366 |
| Msa1344680 | MtrunA17_Chr4g0008361 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 7.32e-123 | 365 |
| Msa1344680 | MtrunA17_Chr8g0393021 | 41.244 | 434 | 246 | 2 | 1 | 434 | 1 | 425 | 9.51e-123 | 364 |
| Msa1344680 | MtrunA17_Chr1g0203181 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 1.26e-122 | 364 |
| Msa1344680 | MtrunA17_Chr2g0292921 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 1.84e-122 | 363 |
| Msa1344680 | MtrunA17_Chr4g0007371 | 41.055 | 436 | 245 | 3 | 1 | 434 | 1 | 426 | 1.15e-121 | 362 |
| Msa1344680 | MtrunA17_Chr8g0386781 | 39.545 | 440 | 256 | 2 | 1 | 440 | 1 | 430 | 3.49e-121 | 360 |
| Msa1344680 | MtrunA17_Chr3g0109241 | 97.826 | 138 | 3 | 0 | 268 | 405 | 1 | 138 | 2.35e-97 | 289 |
| Msa1344680 | MtrunA17_Chr7g0275431 | 31.390 | 446 | 283 | 9 | 2 | 433 | 3 | 439 | 2.28e-76 | 246 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344680 | AT1G50010.1 | 96.000 | 450 | 18 | 0 | 1 | 450 | 1 | 450 | 0.0 | 905 |
| Msa1344680 | AT1G04820.1 | 96.000 | 450 | 18 | 0 | 1 | 450 | 1 | 450 | 0.0 | 905 |
| Msa1344680 | AT4G14960.2 | 95.778 | 450 | 19 | 0 | 1 | 450 | 1 | 450 | 0.0 | 904 |
| Msa1344680 | AT5G19780.1 | 93.563 | 435 | 28 | 0 | 1 | 435 | 1 | 435 | 0.0 | 838 |
| Msa1344680 | AT5G19770.1 | 93.563 | 435 | 28 | 0 | 1 | 435 | 1 | 435 | 0.0 | 838 |
| Msa1344680 | AT1G64740.1 | 90.115 | 435 | 43 | 0 | 1 | 435 | 1 | 435 | 0.0 | 812 |
| Msa1344680 | AT4G14960.1 | 93.612 | 407 | 19 | 1 | 1 | 407 | 1 | 400 | 0.0 | 796 |
| Msa1344680 | AT1G75780.1 | 41.475 | 434 | 245 | 2 | 1 | 434 | 1 | 425 | 2.35e-125 | 371 |
| Msa1344680 | AT5G12250.1 | 41.648 | 437 | 239 | 4 | 1 | 434 | 1 | 424 | 7.81e-124 | 367 |
| Msa1344680 | AT5G62690.1 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.65e-123 | 367 |
| Msa1344680 | AT5G62700.1 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.65e-123 | 367 |
| Msa1344680 | AT1G20010.1 | 41.014 | 434 | 247 | 2 | 1 | 434 | 1 | 425 | 5.94e-123 | 365 |
| Msa1344680 | AT2G29550.1 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 9.67e-123 | 365 |
| Msa1344680 | AT4G20890.1 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.50e-122 | 364 |
| Msa1344680 | AT5G23860.2 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 2.07e-122 | 364 |
| Msa1344680 | AT5G23860.1 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 2.07e-122 | 364 |
| Msa1344680 | AT5G44340.1 | 41.244 | 434 | 245 | 3 | 1 | 434 | 1 | 424 | 1.81e-120 | 359 |
| Msa1344680 | AT5G05620.1 | 32.063 | 446 | 280 | 9 | 2 | 433 | 3 | 439 | 1.79e-77 | 249 |
| Msa1344680 | AT3G61650.1 | 31.614 | 446 | 282 | 9 | 2 | 433 | 3 | 439 | 3.85e-76 | 246 |
Find 164 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGATGTTGCTGTTCTTC+TGG | 0.208803 | tig0006811:+30117 | Msa1344680:CDS |
| GAAATTTCATCATTATTAAA+AGG | 0.219684 | tig0006811:-31352 | None:intergenic |
| AGAAAGCATGAAATGGATTC+TGG | 0.259381 | tig0006811:-30433 | None:intergenic |
| ATGAAATGGATTCTGGGATA+TGG | 0.263566 | tig0006811:-30426 | None:intergenic |
| ACTGCTTCTTTGAGGTTTGA+TGG | 0.277274 | tig0006811:+30360 | Msa1344680:CDS |
| GAGCGTCTGTCTGTTGATTA+TGG | 0.277497 | tig0006811:+29989 | Msa1344680:CDS |
| GGAGGAACTGGTTCTGGTCT+TGG | 0.278416 | tig0006811:+29953 | Msa1344680:CDS |
| TTCTTTGTGTGTTGTTCCTT+TGG | 0.303452 | tig0006811:+31030 | Msa1344680:three_prime_UTR |
| CATCCTTGACTGCTTCTTTG+AGG | 0.310525 | tig0006811:+30352 | Msa1344680:CDS |
| CATCGGTCAAGCCGGTATTC+AGG | 0.312386 | tig0006811:+28520 | Msa1344680:CDS |
| TTTAATTATAAGAAATGCTT+TGG | 0.341707 | tig0006811:-31320 | None:intergenic |
| CCTCTCCACCCACTCCCTCT+TGG | 0.347748 | tig0006811:+30090 | Msa1344680:CDS |
| CAAGAGGACCATTCAGTTTG+TGG | 0.350369 | tig0006811:+30656 | Msa1344680:CDS |
| CAGCCACCTACTGTTGTTCC+TGG | 0.350820 | tig0006811:+30717 | Msa1344680:CDS |
| GCTTTCTCAGCAGATATAAC+TGG | 0.353641 | tig0006811:-30465 | None:intergenic |
| GAAAAGTAGATAACCCGTTT+AGG | 0.361645 | tig0006811:-31108 | None:intergenic |
| ATTAGAATATGTTGAATGAT+TGG | 0.375475 | tig0006811:+31183 | Msa1344680:three_prime_UTR |
| TTCAGGTCGGAAATGCTTGC+TGG | 0.378485 | tig0006811:+28537 | Msa1344680:CDS |
| CAGTCTTGTCGCTCGGCATT+TGG | 0.379031 | tig0006811:-29532 | None:intergenic |
| GTTGGAGGAGGAACTGGTTC+TGG | 0.384483 | tig0006811:+29947 | Msa1344680:CDS |
| TCGCTCGGCATTTGGCCATC+AGG | 0.386811 | tig0006811:-29524 | None:intergenic |
| TTGCCACTGATGAGCTGCTC+AGG | 0.398345 | tig0006811:-29695 | None:intergenic |
| AATGCTGTTGGAGGAGGAAC+TGG | 0.399457 | tig0006811:+29941 | Msa1344680:CDS |
| CCGTGAGGATCTTGCTGCTT+TGG | 0.402547 | tig0006811:+30908 | Msa1344680:CDS |
| CTGGTATGTGGGTGAGGGTA+TGG | 0.404210 | tig0006811:+30863 | Msa1344680:CDS |
| ACGAAGAGAATGAATTGAAA+TGG | 0.405887 | tig0006811:-28450 | None:intergenic |
| CCTTAACCGTCTTGTTTCTC+AGG | 0.406634 | tig0006811:+30204 | Msa1344680:CDS |
| GAAAAGGATTATGAAGAAGT+TGG | 0.409613 | tig0006811:+30930 | Msa1344680:CDS |
| TTTGTGGATTGGTGCCCTAC+TGG | 0.413566 | tig0006811:+30672 | Msa1344680:CDS |
| AGAGATCGTTGATCTGTGTT+TGG | 0.419543 | tig0006811:+29862 | Msa1344680:CDS |
| AACACCTTCTTCAGCGAGAC+TGG | 0.421898 | tig0006811:+29578 | Msa1344680:CDS |
| ATGGAAAGAAATCCAAGCTT+GGG | 0.425337 | tig0006811:+30008 | Msa1344680:CDS |
| ACAAGTGTGGCTGAGGTGTT+TGG | 0.429571 | tig0006811:+30789 | Msa1344680:CDS |
| CAACATATGTAAGAAACAAT+AGG | 0.429846 | tig0006811:-31071 | None:intergenic |
| GTTGAATGATTGGATGTTTG+TGG | 0.431871 | tig0006811:+31193 | Msa1344680:three_prime_UTR |
| TACTGTCTATCCCTCCCCTC+AGG | 0.434518 | tig0006811:+30033 | Msa1344680:CDS |
| TACGAACGGTGGGTGGGTAA+TGG | 0.448762 | tig0006811:-28270 | None:intergenic |
| TCAAGAGTCAAGACCTAAAC+GGG | 0.449832 | tig0006811:+31095 | Msa1344680:three_prime_UTR |
| ACGGTTAAGGTTGGTGTAAG+TGG | 0.452971 | tig0006811:-30191 | None:intergenic |
| GGATCTTGCTGCTTTGGAAA+AGG | 0.453193 | tig0006811:+30914 | Msa1344680:CDS |
| GACAGCAGCATTCACATCCT+TGG | 0.453229 | tig0006811:-30619 | None:intergenic |
| TGCATTTGTTCACTGGTATG+TGG | 0.454287 | tig0006811:+30851 | Msa1344680:CDS |
| TTCTTCAGCGAGACTGGTGC+TGG | 0.455019 | tig0006811:+29584 | Msa1344680:CDS |
| CATATGAAGAAAGCATGAAA+TGG | 0.460970 | tig0006811:-30440 | None:intergenic |
| CACAAACTGAATGGTCCTCT+TGG | 0.463910 | tig0006811:-30655 | None:intergenic |
| CCTGAGAAACAAGACGGTTA+AGG | 0.472342 | tig0006811:-30204 | None:intergenic |
| TCATCATTATTAAAAGGAAA+CGG | 0.474824 | tig0006811:-31346 | None:intergenic |
| CCAAGCGTGCATTTGTTCAC+TGG | 0.476016 | tig0006811:+30844 | Msa1344680:CDS |
| TGTTCACTGGTATGTGGGTG+AGG | 0.477980 | tig0006811:+30857 | Msa1344680:CDS |
| GAAGAAGTTGGTGCCGAGTC+TGG | 0.479857 | tig0006811:+30942 | Msa1344680:CDS |
| TGAAATGGATTCTGGGATAT+GGG | 0.482192 | tig0006811:-30425 | None:intergenic |
| ATGACCACGGGCGAAGTTGT+TGG | 0.484462 | tig0006811:-29729 | None:intergenic |
| TGTGTGAGTTTCATTTATAG+AGG | 0.485171 | tig0006811:-28345 | None:intergenic |
| AAGCTATCTATGACATCTGC+AGG | 0.485194 | tig0006811:+30146 | Msa1344680:CDS |
| ATCAAGAGTCAAGACCTAAA+CGG | 0.485727 | tig0006811:+31094 | Msa1344680:three_prime_UTR |
| GAAAGCATGAAATGGATTCT+GGG | 0.486512 | tig0006811:-30432 | None:intergenic |
| GTGGGTGAGGGTATGGAAGA+AGG | 0.492111 | tig0006811:+30870 | Msa1344680:CDS |
| GATATGGGACCAAGTTGGTC+TGG | 0.495701 | tig0006811:-30410 | None:intergenic |
| GTTGGTTTACGAACGGTGGG+TGG | 0.500920 | tig0006811:-28277 | None:intergenic |
| AGCATTTCCGACCTGAATAC+CGG | 0.501769 | tig0006811:-28531 | None:intergenic |
| GGACCATTCAGTTTGTGGAT+TGG | 0.503034 | tig0006811:+30661 | Msa1344680:CDS |
| TATGGAAAGAAATCCAAGCT+TGG | 0.504088 | tig0006811:+30007 | Msa1344680:CDS |
| TTGTGATAATTAACCATGGT+TGG | 0.508812 | tig0006811:-28295 | None:intergenic |
| TCCTGGTGGTGACCTTGCTA+AGG | 0.511101 | tig0006811:+30734 | Msa1344680:CDS |
| TGAGGGCGGTGATGAAGATA+TGG | 0.511219 | tig0006811:+30965 | Msa1344680:CDS |
| CAGTGTGCTCCAAGAGGGAG+TGG | 0.513536 | tig0006811:-30099 | None:intergenic |
| ACAGCAGCATTCACATCCTT+GGG | 0.514766 | tig0006811:-30618 | None:intergenic |
| CCAGTGAACAAATGCACGCT+TGG | 0.525328 | tig0006811:-30844 | None:intergenic |
| CACTTAGCCATCATAGATGA+TGG | 0.525506 | tig0006811:-30537 | None:intergenic |
| CCCTCGCCATGGAAAGTACA+TGG | 0.526872 | tig0006811:+30563 | Msa1344680:CDS |
| TTCTTATATGCACAGCCTGA+TGG | 0.528986 | tig0006811:+29509 | Msa1344680:intron |
| AAACTCAACAAGTGTGGCTG+AGG | 0.529684 | tig0006811:+30782 | Msa1344680:CDS |
| GTGGAGAGGACACTGTTGTA+TGG | 0.536266 | tig0006811:-30076 | None:intergenic |
| AGCACCAGTCTCGCTGAAGA+AGG | 0.536901 | tig0006811:-29582 | None:intergenic |
| GATAACTGCACTGGTCTCCA+AGG | 0.539021 | tig0006811:+29905 | Msa1344680:CDS |
| AACCATGGTTGGTTTACGAA+CGG | 0.539516 | tig0006811:-28284 | None:intergenic |
| CCGAGCGACAAGACTGTTGG+AGG | 0.543702 | tig0006811:+29539 | Msa1344680:CDS |
| TGATGGCTCAAAAGCACTGT+TGG | 0.546926 | tig0006811:-30520 | None:intergenic |
| GACTGAATTCCAGACCAACT+TGG | 0.549713 | tig0006811:+30401 | Msa1344680:CDS |
| GCACCAATCCACAAACTGAA+TGG | 0.551570 | tig0006811:-30664 | None:intergenic |
| GAGGTGGAAACCTGAGGGGA+GGG | 0.551933 | tig0006811:-30043 | None:intergenic |
| GTGTGAGTTTCATTTATAGA+GGG | 0.554691 | tig0006811:-28344 | None:intergenic |
| ATAGACAGTAAACCCAAGCT+TGG | 0.556586 | tig0006811:-30020 | None:intergenic |
| CGGTTAAGGTTGGTGTAAGT+GGG | 0.558069 | tig0006811:-30190 | None:intergenic |
| CAACAGAGGTGGAAACCTGA+GGG | 0.558387 | tig0006811:-30048 | None:intergenic |
| AGCAAGCCATGTACTTTCCA+TGG | 0.560681 | tig0006811:-30569 | None:intergenic |
| TACTGTCTCGAACACGGCAT+CGG | 0.561154 | tig0006811:+28566 | Msa1344680:CDS |
| TCAGGTCGGAAATGCTTGCT+GGG | 0.562273 | tig0006811:+28538 | Msa1344680:CDS |
| CAAAGCAGCAAGATCCTCAC+GGG | 0.564402 | tig0006811:-30907 | None:intergenic |
| GTTATCGATGAGGTGAGGAC+TGG | 0.564950 | tig0006811:+29650 | Msa1344680:CDS |
| ATGCCGAGCGACAAGACTGT+TGG | 0.565365 | tig0006811:+29536 | Msa1344680:CDS |
| GTTGGTGCCGAGTCTGGTGA+GGG | 0.565547 | tig0006811:+30948 | Msa1344680:CDS |
| CCGAGGCGATGTTGTTCCCA+AGG | 0.566146 | tig0006811:+30602 | Msa1344680:CDS |
| AGCGACAAGACTGTTGGAGG+TGG | 0.567132 | tig0006811:+29542 | Msa1344680:CDS |
| TCAGTTCACATCGGTCAAGC+CGG | 0.567216 | tig0006811:+28512 | Msa1344680:CDS |
| AAACCTCAAAGAAGCAGTCA+AGG | 0.571224 | tig0006811:-30355 | None:intergenic |
| AAGCTTGCTGATAACTGCAC+TGG | 0.572122 | tig0006811:+29896 | Msa1344680:CDS |
| TCAGATCTAGATCTAGAAGA+AGG | 0.572931 | tig0006811:+28387 | Msa1344680:five_prime_UTR |
| CACTGATGAGCTGCTCAGGA+TGG | 0.573952 | tig0006811:-29691 | None:intergenic |
| ACCACGGGCGAAGTTGTTGG+CGG | 0.576233 | tig0006811:-29726 | None:intergenic |
| TGCCCTACTGGTTTCAAGTG+TGG | 0.577249 | tig0006811:+30684 | Msa1344680:CDS |
| GCATTTGTTCACTGGTATGT+GGG | 0.578176 | tig0006811:+30852 | Msa1344680:CDS |
| GCTGCTCAGGATGGAAGAGT+TGG | 0.579720 | tig0006811:-29682 | None:intergenic |
| ATCACCGCCCTCACCAGACT+CGG | 0.580489 | tig0006811:-30955 | None:intergenic |
| CCAAAGCAGCAAGATCCTCA+CGG | 0.583986 | tig0006811:-30908 | None:intergenic |
| GCCATGTACTTTCCATGGCG+AGG | 0.586030 | tig0006811:-30564 | None:intergenic |
| CATGAAAACAATTCATCCAA+AGG | 0.590994 | tig0006811:-31046 | None:intergenic |
| TTGGTTTACGAACGGTGGGT+GGG | 0.592081 | tig0006811:-28276 | None:intergenic |
| ACCTTAGCAAGGTCACCACC+AGG | 0.592703 | tig0006811:-30735 | None:intergenic |
| GTTCACTGGTATGTGGGTGA+GGG | 0.594621 | tig0006811:+30858 | Msa1344680:CDS |
| CCATGTACTTTCCATGGCGA+GGG | 0.595056 | tig0006811:-30563 | None:intergenic |
| ATGGTTGGTTTACGAACGGT+GGG | 0.597218 | tig0006811:-28280 | None:intergenic |
| AGTTGGTGCCGAGTCTGGTG+AGG | 0.599254 | tig0006811:+30947 | Msa1344680:CDS |
| CATGGTTGGTTTACGAACGG+TGG | 0.599944 | tig0006811:-28281 | None:intergenic |
| GTGCTCCAAGAGGGAGTGGG+TGG | 0.600125 | tig0006811:-30095 | None:intergenic |
| AGTGGGACGCTCAATGTCGA+GGG | 0.600615 | tig0006811:-30173 | None:intergenic |
| GCCGCCAACAACTTCGCCCG+TGG | 0.600730 | tig0006811:+29725 | Msa1344680:CDS |
| AAGTGGGACGCTCAATGTCG+AGG | 0.610089 | tig0006811:-30174 | None:intergenic |
| GATCTAGATCTGATTATGAG+AGG | 0.611018 | tig0006811:-28377 | None:intergenic |
| CATCCTGAGCAGCTCATCAG+TGG | 0.614786 | tig0006811:+29692 | Msa1344680:CDS |
| ACAACAGAGGTGGAAACCTG+AGG | 0.615914 | tig0006811:-30049 | None:intergenic |
| TATCAGCAAGCTTTCTGATG+CGG | 0.616085 | tig0006811:-29886 | None:intergenic |
| CTGCCCTCTGTACCTTAGCA+AGG | 0.618015 | tig0006811:-30746 | None:intergenic |
| ATAACTGCACTGGTCTCCAA+GGG | 0.620138 | tig0006811:+29906 | Msa1344680:CDS |
| GCTAAGTGTGACCCTCGCCA+TGG | 0.621505 | tig0006811:+30552 | Msa1344680:CDS |
| CCAAGAGGGAGTGGGTGGAG+AGG | 0.621744 | tig0006811:-30090 | None:intergenic |
| CTCACCTCATCGATAACAGT+GGG | 0.621848 | tig0006811:-29644 | None:intergenic |
| AACATCAGTGTGCTCCAAGA+GGG | 0.623268 | tig0006811:-30104 | None:intergenic |
| ATACCACACTTGAAACCAGT+AGG | 0.623812 | tig0006811:-30687 | None:intergenic |
| AGAAACAAGACGGTTAAGGT+TGG | 0.623820 | tig0006811:-30200 | None:intergenic |
| CACCGTTCGTAAACCAACCA+TGG | 0.624077 | tig0006811:+28282 | Msa1344680:five_prime_UTR |
| CCTCCAACAGTCTTGTCGCT+CGG | 0.624881 | tig0006811:-29539 | None:intergenic |
| CCACCTACTGTTGTTCCTGG+TGG | 0.628220 | tig0006811:+30720 | Msa1344680:CDS |
| TCACCACCAGGAACAACAGT+AGG | 0.629041 | tig0006811:-30723 | None:intergenic |
| TCTGGGATATGGGACCAAGT+TGG | 0.629717 | tig0006811:-30415 | None:intergenic |
| AGAGGTGGAAACCTGAGGGG+AGG | 0.631975 | tig0006811:-30044 | None:intergenic |
| TGAATTGAAATGGAACGAAG+AGG | 0.632334 | tig0006811:-28440 | None:intergenic |
| AGGATGGAAGAGTTGGCGAT+AGG | 0.639504 | tig0006811:-29675 | None:intergenic |
| GAGCTTTACTGTCTCGAACA+CGG | 0.642769 | tig0006811:+28560 | Msa1344680:CDS |
| CCTTGGGAACAACATCGCCT+CGG | 0.644372 | tig0006811:-30602 | None:intergenic |
| AGTGTGCTCCAAGAGGGAGT+GGG | 0.645027 | tig0006811:-30098 | None:intergenic |
| AATCAACAGACAGACGCTCA+AGG | 0.649850 | tig0006811:-29985 | None:intergenic |
| GATTTCAAACTCAACAAGTG+TGG | 0.651909 | tig0006811:+30776 | Msa1344680:CDS |
| TGACCTTGCTAAGGTACAGA+GGG | 0.652678 | tig0006811:+30743 | Msa1344680:CDS |
| CATACTGGTATAATGACCAC+GGG | 0.654535 | tig0006811:-29741 | None:intergenic |
| CAACATCAGTGTGCTCCAAG+AGG | 0.655535 | tig0006811:-30105 | None:intergenic |
| GATTGGATGTTTGTGGACCG+TGG | 0.657662 | tig0006811:+31200 | Msa1344680:three_prime_UTR |
| TACCACACTTGAAACCAGTA+GGG | 0.657871 | tig0006811:-30686 | None:intergenic |
| CCACCAGGAACAACAGTAGG+TGG | 0.665309 | tig0006811:-30720 | None:intergenic |
| GTGACCTTGCTAAGGTACAG+AGG | 0.667763 | tig0006811:+30742 | Msa1344680:CDS |
| ACATACTGGTATAATGACCA+CGG | 0.669902 | tig0006811:-29742 | None:intergenic |
| GGTGCCGAGTCTGGTGAGGG+CGG | 0.669914 | tig0006811:+30951 | Msa1344680:CDS |
| GTATGGCTCAACAACAGAGG+TGG | 0.674184 | tig0006811:-30059 | None:intergenic |
| GGTCAAGCCGGTATTCAGGT+CGG | 0.675515 | tig0006811:+28524 | Msa1344680:CDS |
| TGAGCCCACTGTTATCGATG+AGG | 0.676846 | tig0006811:+29640 | Msa1344680:CDS |
| TCGCTACAATCAAAACCAAG+AGG | 0.680258 | tig0006811:+30640 | Msa1344680:CDS |
| TAGCTACCTGAGAAACAAGA+CGG | 0.682350 | tig0006811:-30210 | None:intergenic |
| CCACTGTTATCGATGAGGTG+AGG | 0.685674 | tig0006811:+29645 | Msa1344680:CDS |
| GTCATTGTGATAATTAACCA+TGG | 0.686546 | tig0006811:-28299 | None:intergenic |
| CCTCACCTCATCGATAACAG+TGG | 0.687640 | tig0006811:-29645 | None:intergenic |
| GAGTGCATTTCAGTTCACAT+CGG | 0.696942 | tig0006811:+28503 | Msa1344680:CDS |
| GTTGTATGGCTCAACAACAG+AGG | 0.698181 | tig0006811:-30062 | None:intergenic |
| GCTTGCTGTTTGATGTACCG+AGG | 0.704934 | tig0006811:+30585 | Msa1344680:CDS |
| AACAGAGGTGGAAACCTGAG+GGG | 0.715815 | tig0006811:-30047 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAAAATTGAAAAAATAA+CGG | - | tig0006811:28727-28746 | None:intergenic | 10.0% |
| !!! | AATTTCATATGATTTTTTAA+TGG | + | tig0006811:31369-31388 | Msa1344680:three_prime_UTR | 10.0% |
| !!! | ATTTCATATGATTTTTTAAT+GGG | + | tig0006811:31370-31389 | Msa1344680:three_prime_UTR | 10.0% |
| !! | TTTAATTATAAGAAATGCTT+TGG | - | tig0006811:31323-31342 | None:intergenic | 15.0% |
| !! | GAAATTTCATCATTATTAAA+AGG | - | tig0006811:31355-31374 | None:intergenic | 15.0% |
| !! | TTACATAACCTAATAACAAA+CGG | - | tig0006811:28914-28933 | None:intergenic | 20.0% |
| !! | TCTGTTTATGAGTTAATATA+TGG | + | tig0006811:29088-29107 | Msa1344680:intron | 20.0% |
| !! | TTACATAACCTAATAACATA+CGG | - | tig0006811:29257-29276 | None:intergenic | 20.0% |
| !!! | TTCTAATGATTTTAGATAAG+AGG | - | tig0006811:31170-31189 | None:intergenic | 20.0% |
| !! | ATTAGAATATGTTGAATGAT+TGG | + | tig0006811:31183-31202 | Msa1344680:three_prime_UTR | 20.0% |
| !! | TCATCATTATTAAAAGGAAA+CGG | - | tig0006811:31349-31368 | None:intergenic | 20.0% |
| ! | AAAATGAACAAAGAAAATGC+TGG | - | tig0006811:28672-28691 | None:intergenic | 25.0% |
| ! | TTTCCTTAGATCTGAAAAAT+AGG | - | tig0006811:28699-28718 | None:intergenic | 25.0% |
| ! | ATCAAATTTAGAAACAATGC+TGG | - | tig0006811:28767-28786 | None:intergenic | 25.0% |
| !!! | ATTTTCCATGTTGACTTAAT+CGG | + | tig0006811:28785-28804 | Msa1344680:intron | 25.0% |
| ! | TGTAATATTTATGAAATCGC+TGG | + | tig0006811:28853-28872 | Msa1344680:intron | 25.0% |
| !!! | GAATTTTTGTTTGAATCTTG+CGG | + | tig0006811:28957-28976 | Msa1344680:intron | 25.0% |
| !!! | GTTGTTTTGTTATGTTATCT+TGG | + | tig0006811:29159-29178 | Msa1344680:intron | 25.0% |
| ! | ATATATGTTATCTATGTTCG+TGG | + | tig0006811:29220-29239 | Msa1344680:intron | 25.0% |
| ! | TATTAGATCCGTATGTTATT+AGG | + | tig0006811:29246-29265 | Msa1344680:intron | 25.0% |
| ! | AACAATCAACAATTGAAAAG+TGG | - | tig0006811:29343-29362 | None:intergenic | 25.0% |
| ! | AGTATCAAACTTCAATTGAA+TGG | - | tig0006811:29404-29423 | None:intergenic | 25.0% |
| ! | TCAATTGAAGTTTGATACTA+TGG | + | tig0006811:29405-29424 | Msa1344680:intron | 25.0% |
| ! | TTATTTCAAGAGCTCATATA+TGG | + | tig0006811:29485-29504 | Msa1344680:intron | 25.0% |
| ! | ATCACAAATGAGTAATAATG+TGG | - | tig0006811:29783-29802 | None:intergenic | 25.0% |
| !!! | TAATTTGTGTTACTTTCAGT+TGG | + | tig0006811:29836-29855 | Msa1344680:intron | 25.0% |
| !!! | AATTTGTGTTACTTTCAGTT+GGG | + | tig0006811:29837-29856 | Msa1344680:intron | 25.0% |
| !!! | CTTTGTTTTTGATTGTTTTC+AGG | + | tig0006811:30323-30342 | Msa1344680:intron | 25.0% |
| ! | CAACATATGTAAGAAACAAT+AGG | - | tig0006811:31074-31093 | None:intergenic | 25.0% |
| TTGTGATAATTAACCATGGT+TGG | - | tig0006811:28298-28317 | None:intergenic | 30.0% | |
| GTCATTGTGATAATTAACCA+TGG | - | tig0006811:28302-28321 | None:intergenic | 30.0% | |
| GTGTGAGTTTCATTTATAGA+GGG | - | tig0006811:28347-28366 | None:intergenic | 30.0% | |
| TGTGTGAGTTTCATTTATAG+AGG | - | tig0006811:28348-28367 | None:intergenic | 30.0% | |
| ACGAAGAGAATGAATTGAAA+TGG | - | tig0006811:28453-28472 | None:intergenic | 30.0% | |
| AAATCTGAACGAAAATGGAA+TGG | - | tig0006811:28620-28639 | None:intergenic | 30.0% | |
| ATCACAAATCTGAACGAAAA+TGG | - | tig0006811:28625-28644 | None:intergenic | 30.0% | |
| !! | GTTCCTATTTTTCAGATCTA+AGG | + | tig0006811:28693-28712 | Msa1344680:intron | 30.0% |
| !! | TAGTAGATCCGTTTGTTATT+AGG | + | tig0006811:28903-28922 | Msa1344680:intron | 30.0% |
| !!! | TTTTTGGTTTTCAATGCTGT+TGG | + | tig0006811:29929-29948 | Msa1344680:CDS | 30.0% |
| ACAATTCTGATTGTGAATTG+CGG | + | tig0006811:30252-30271 | Msa1344680:intron | 30.0% | |
| ! | CATATGAAGAAAGCATGAAA+TGG | - | tig0006811:30443-30462 | None:intergenic | 30.0% |
| GAAAAGGATTATGAAGAAGT+TGG | + | tig0006811:30930-30949 | Msa1344680:CDS | 30.0% | |
| CATGAAAACAATTCATCCAA+AGG | - | tig0006811:31049-31068 | None:intergenic | 30.0% | |
| GATCTAGATCTGATTATGAG+AGG | - | tig0006811:28380-28399 | None:intergenic | 35.0% | |
| TCAGATCTAGATCTAGAAGA+AGG | + | tig0006811:28387-28406 | Msa1344680:five_prime_UTR | 35.0% | |
| TGAATTGAAATGGAACGAAG+AGG | - | tig0006811:28443-28462 | None:intergenic | 35.0% | |
| TTTGTGATATGCGTTTCTCT+AGG | + | tig0006811:28637-28656 | Msa1344680:intron | 35.0% | |
| AAGATCTACAAAAACAGCAC+GGG | - | tig0006811:29621-29640 | None:intergenic | 35.0% | |
| CAAGATCTACAAAAACAGCA+CGG | - | tig0006811:29622-29641 | None:intergenic | 35.0% | |
| ACATACTGGTATAATGACCA+CGG | - | tig0006811:29745-29764 | None:intergenic | 35.0% | |
| CATTGAAAACCAAAAACCCT+TGG | - | tig0006811:29925-29944 | None:intergenic | 35.0% | |
| TATGGAAAGAAATCCAAGCT+TGG | + | tig0006811:30007-30026 | Msa1344680:CDS | 35.0% | |
| ATGGAAAGAAATCCAAGCTT+GGG | + | tig0006811:30008-30027 | Msa1344680:CDS | 35.0% | |
| !! | TGAAATGGATTCTGGGATAT+GGG | - | tig0006811:30428-30447 | None:intergenic | 35.0% |
| !! | ATGAAATGGATTCTGGGATA+TGG | - | tig0006811:30429-30448 | None:intergenic | 35.0% |
| ! | GAAAGCATGAAATGGATTCT+GGG | - | tig0006811:30435-30454 | None:intergenic | 35.0% |
| ! | AGAAAGCATGAAATGGATTC+TGG | - | tig0006811:30436-30455 | None:intergenic | 35.0% |
| ! | TTTTGAGCCATCATCTATGA+TGG | + | tig0006811:30530-30549 | Msa1344680:CDS | 35.0% |
| GATTTCAAACTCAACAAGTG+TGG | + | tig0006811:30776-30795 | Msa1344680:CDS | 35.0% | |
| ! | TTCTTTGTGTGTTGTTCCTT+TGG | + | tig0006811:31030-31049 | Msa1344680:three_prime_UTR | 35.0% |
| ATCAAGAGTCAAGACCTAAA+CGG | + | tig0006811:31094-31113 | Msa1344680:three_prime_UTR | 35.0% | |
| GAAAAGTAGATAACCCGTTT+AGG | - | tig0006811:31111-31130 | None:intergenic | 35.0% | |
| GTTGAATGATTGGATGTTTG+TGG | + | tig0006811:31193-31212 | Msa1344680:three_prime_UTR | 35.0% | |
| ! | TCATTTTCTAAACACAGCCA+CGG | - | tig0006811:31220-31239 | None:intergenic | 35.0% |
| !! | AACCATGGTTGGTTTACGAA+CGG | - | tig0006811:28287-28306 | None:intergenic | 40.0% |
| ! | CTCTCATTTTCGCTGATCAA+AGG | - | tig0006811:28484-28503 | None:intergenic | 40.0% |
| GAGTGCATTTCAGTTCACAT+CGG | + | tig0006811:28503-28522 | Msa1344680:CDS | 40.0% | |
| CAGATCCGATTAAGTCAACA+TGG | - | tig0006811:28793-28812 | None:intergenic | 40.0% | |
| TTCTTATATGCACAGCCTGA+TGG | + | tig0006811:29509-29528 | Msa1344680:intron | 40.0% | |
| AGATCTACAAAAACAGCACG+GGG | - | tig0006811:29620-29639 | None:intergenic | 40.0% | |
| CATACTGGTATAATGACCAC+GGG | - | tig0006811:29744-29763 | None:intergenic | 40.0% | |
| AGAGATCGTTGATCTGTGTT+TGG | + | tig0006811:29862-29881 | Msa1344680:CDS | 40.0% | |
| TATCAGCAAGCTTTCTGATG+CGG | - | tig0006811:29889-29908 | None:intergenic | 40.0% | |
| !! | TTGGTTTTCAATGCTGTTGG+AGG | + | tig0006811:29932-29951 | Msa1344680:CDS | 40.0% |
| ATAGACAGTAAACCCAAGCT+TGG | - | tig0006811:30023-30042 | None:intergenic | 40.0% | |
| AAGCTATCTATGACATCTGC+AGG | + | tig0006811:30146-30165 | Msa1344680:CDS | 40.0% | |
| AGAAACAAGACGGTTAAGGT+TGG | - | tig0006811:30203-30222 | None:intergenic | 40.0% | |
| TAGCTACCTGAGAAACAAGA+CGG | - | tig0006811:30213-30232 | None:intergenic | 40.0% | |
| AAACCTCAAAGAAGCAGTCA+AGG | - | tig0006811:30358-30377 | None:intergenic | 40.0% | |
| !! | ACTGCTTCTTTGAGGTTTGA+TGG | + | tig0006811:30360-30379 | Msa1344680:CDS | 40.0% |
| GCTTTCTCAGCAGATATAAC+TGG | - | tig0006811:30468-30487 | None:intergenic | 40.0% | |
| CACTTAGCCATCATAGATGA+TGG | - | tig0006811:30540-30559 | None:intergenic | 40.0% | |
| TCGCTACAATCAAAACCAAG+AGG | + | tig0006811:30640-30659 | Msa1344680:CDS | 40.0% | |
| TACCACACTTGAAACCAGTA+GGG | - | tig0006811:30689-30708 | None:intergenic | 40.0% | |
| ATACCACACTTGAAACCAGT+AGG | - | tig0006811:30690-30709 | None:intergenic | 40.0% | |
| TGCATTTGTTCACTGGTATG+TGG | + | tig0006811:30851-30870 | Msa1344680:CDS | 40.0% | |
| GCATTTGTTCACTGGTATGT+GGG | + | tig0006811:30852-30871 | Msa1344680:CDS | 40.0% | |
| TCAAGAGTCAAGACCTAAAC+GGG | + | tig0006811:31095-31114 | Msa1344680:three_prime_UTR | 40.0% | |
| !! | ATGGTTGGTTTACGAACGGT+GGG | - | tig0006811:28283-28302 | None:intergenic | 45.0% |
| AGCATTTCCGACCTGAATAC+CGG | - | tig0006811:28534-28553 | None:intergenic | 45.0% | |
| GAGCTTTACTGTCTCGAACA+CGG | + | tig0006811:28560-28579 | Msa1344680:CDS | 45.0% | |
| GATCTACAAAAACAGCACGG+GGG | - | tig0006811:29619-29638 | None:intergenic | 45.0% | |
| CTCACCTCATCGATAACAGT+GGG | - | tig0006811:29647-29666 | None:intergenic | 45.0% | |
| GTTGCGAGTTAGAGACATAC+TGG | - | tig0006811:29759-29778 | None:intergenic | 45.0% | |
| !! | AAGCTTGCTGATAACTGCAC+TGG | + | tig0006811:29896-29915 | Msa1344680:CDS | 45.0% |
| ! | ATAACTGCACTGGTCTCCAA+GGG | + | tig0006811:29906-29925 | Msa1344680:CDS | 45.0% |
| ! | GTTTTCAATGCTGTTGGAGG+AGG | + | tig0006811:29935-29954 | Msa1344680:CDS | 45.0% |
| AATCAACAGACAGACGCTCA+AGG | - | tig0006811:29988-30007 | None:intergenic | 45.0% | |
| ! | GAGCGTCTGTCTGTTGATTA+TGG | + | tig0006811:29989-30008 | Msa1344680:CDS | 45.0% |
| GTTGTATGGCTCAACAACAG+AGG | - | tig0006811:30065-30084 | None:intergenic | 45.0% | |
| AACATCAGTGTGCTCCAAGA+GGG | - | tig0006811:30107-30126 | None:intergenic | 45.0% | |
| ! | CACTGATGTTGCTGTTCTTC+TGG | + | tig0006811:30117-30136 | Msa1344680:CDS | 45.0% |
| !! | CGGTTAAGGTTGGTGTAAGT+GGG | - | tig0006811:30193-30212 | None:intergenic | 45.0% |
| !! | ACGGTTAAGGTTGGTGTAAG+TGG | - | tig0006811:30194-30213 | None:intergenic | 45.0% |
| CCTGAGAAACAAGACGGTTA+AGG | - | tig0006811:30207-30226 | None:intergenic | 45.0% | |
| !! | CCTTAACCGTCTTGTTTCTC+AGG | + | tig0006811:30204-30223 | Msa1344680:CDS | 45.0% |
| CATCCTTGACTGCTTCTTTG+AGG | + | tig0006811:30352-30371 | Msa1344680:CDS | 45.0% | |
| GACTGAATTCCAGACCAACT+TGG | + | tig0006811:30401-30420 | Msa1344680:CDS | 45.0% | |
| !! | TGATGGCTCAAAAGCACTGT+TGG | - | tig0006811:30523-30542 | None:intergenic | 45.0% |
| AGCAAGCCATGTACTTTCCA+TGG | - | tig0006811:30572-30591 | None:intergenic | 45.0% | |
| ACAGCAGCATTCACATCCTT+GGG | - | tig0006811:30621-30640 | None:intergenic | 45.0% | |
| CACAAACTGAATGGTCCTCT+TGG | - | tig0006811:30658-30677 | None:intergenic | 45.0% | |
| CAAGAGGACCATTCAGTTTG+TGG | + | tig0006811:30656-30675 | Msa1344680:CDS | 45.0% | |
| GGACCATTCAGTTTGTGGAT+TGG | + | tig0006811:30661-30680 | Msa1344680:CDS | 45.0% | |
| GCACCAATCCACAAACTGAA+TGG | - | tig0006811:30667-30686 | None:intergenic | 45.0% | |
| TGACCTTGCTAAGGTACAGA+GGG | + | tig0006811:30743-30762 | Msa1344680:CDS | 45.0% | |
| AAACTCAACAAGTGTGGCTG+AGG | + | tig0006811:30782-30801 | Msa1344680:CDS | 45.0% | |
| !!! | AGAATTTTCTGAAGCCCGTG+AGG | + | tig0006811:30893-30912 | Msa1344680:CDS | 45.0% |
| !! | GGATCTTGCTGCTTTGGAAA+AGG | + | tig0006811:30914-30933 | Msa1344680:CDS | 45.0% |
| TTGGTTTACGAACGGTGGGT+GGG | - | tig0006811:28279-28298 | None:intergenic | 50.0% | |
| !! | CATGGTTGGTTTACGAACGG+TGG | - | tig0006811:28284-28303 | None:intergenic | 50.0% |
| CACCGTTCGTAAACCAACCA+TGG | + | tig0006811:28282-28301 | Msa1344680:five_prime_UTR | 50.0% | |
| TCAGTTCACATCGGTCAAGC+CGG | + | tig0006811:28512-28531 | Msa1344680:CDS | 50.0% | |
| TTCAGGTCGGAAATGCTTGC+TGG | + | tig0006811:28537-28556 | Msa1344680:CDS | 50.0% | |
| TCAGGTCGGAAATGCTTGCT+GGG | + | tig0006811:28538-28557 | Msa1344680:CDS | 50.0% | |
| TACTGTCTCGAACACGGCAT+CGG | + | tig0006811:28566-28585 | Msa1344680:CDS | 50.0% | |
| AACACCTTCTTCAGCGAGAC+TGG | + | tig0006811:29578-29597 | Msa1344680:CDS | 50.0% | |
| TGAGCCCACTGTTATCGATG+AGG | + | tig0006811:29640-29659 | Msa1344680:CDS | 50.0% | |
| CCTCACCTCATCGATAACAG+TGG | - | tig0006811:29648-29667 | None:intergenic | 50.0% | |
| CCACTGTTATCGATGAGGTG+AGG | + | tig0006811:29645-29664 | Msa1344680:CDS | 50.0% | |
| GTTATCGATGAGGTGAGGAC+TGG | + | tig0006811:29650-29669 | Msa1344680:CDS | 50.0% | |
| AGGATGGAAGAGTTGGCGAT+AGG | - | tig0006811:29678-29697 | None:intergenic | 50.0% | |
| ! | GATAACTGCACTGGTCTCCA+AGG | + | tig0006811:29905-29924 | Msa1344680:CDS | 50.0% |
| !! | CACTGGTCTCCAAGGGTTTT+TGG | + | tig0006811:29913-29932 | Msa1344680:CDS | 50.0% |
| AATGCTGTTGGAGGAGGAAC+TGG | + | tig0006811:29941-29960 | Msa1344680:CDS | 50.0% | |
| AACAGAGGTGGAAACCTGAG+GGG | - | tig0006811:30050-30069 | None:intergenic | 50.0% | |
| CAACAGAGGTGGAAACCTGA+GGG | - | tig0006811:30051-30070 | None:intergenic | 50.0% | |
| ACAACAGAGGTGGAAACCTG+AGG | - | tig0006811:30052-30071 | None:intergenic | 50.0% | |
| GTATGGCTCAACAACAGAGG+TGG | - | tig0006811:30062-30081 | None:intergenic | 50.0% | |
| GTGGAGAGGACACTGTTGTA+TGG | - | tig0006811:30079-30098 | None:intergenic | 50.0% | |
| CAACATCAGTGTGCTCCAAG+AGG | - | tig0006811:30108-30127 | None:intergenic | 50.0% | |
| !! | GATATGGGACCAAGTTGGTC+TGG | - | tig0006811:30413-30432 | None:intergenic | 50.0% |
| ! | TCTGGGATATGGGACCAAGT+TGG | - | tig0006811:30418-30437 | None:intergenic | 50.0% |
| CCATGTACTTTCCATGGCGA+GGG | - | tig0006811:30566-30585 | None:intergenic | 50.0% | |
| !! | GCTTGCTGTTTGATGTACCG+AGG | + | tig0006811:30585-30604 | Msa1344680:CDS | 50.0% |
| GACAGCAGCATTCACATCCT+TGG | - | tig0006811:30622-30641 | None:intergenic | 50.0% | |
| !! | TTTGTGGATTGGTGCCCTAC+TGG | + | tig0006811:30672-30691 | Msa1344680:CDS | 50.0% |
| !! | TGCCCTACTGGTTTCAAGTG+TGG | + | tig0006811:30684-30703 | Msa1344680:CDS | 50.0% |
| TCACCACCAGGAACAACAGT+AGG | - | tig0006811:30726-30745 | None:intergenic | 50.0% | |
| GTGACCTTGCTAAGGTACAG+AGG | + | tig0006811:30742-30761 | Msa1344680:CDS | 50.0% | |
| ! | ACAAGTGTGGCTGAGGTGTT+TGG | + | tig0006811:30789-30808 | Msa1344680:CDS | 50.0% |
| CCAGTGAACAAATGCACGCT+TGG | - | tig0006811:30847-30866 | None:intergenic | 50.0% | |
| CCAAGCGTGCATTTGTTCAC+TGG | + | tig0006811:30844-30863 | Msa1344680:CDS | 50.0% | |
| TGTTCACTGGTATGTGGGTG+AGG | + | tig0006811:30857-30876 | Msa1344680:CDS | 50.0% | |
| GTTCACTGGTATGTGGGTGA+GGG | + | tig0006811:30858-30877 | Msa1344680:CDS | 50.0% | |
| CAAAGCAGCAAGATCCTCAC+GGG | - | tig0006811:30910-30929 | None:intergenic | 50.0% | |
| CCAAAGCAGCAAGATCCTCA+CGG | - | tig0006811:30911-30930 | None:intergenic | 50.0% | |
| TGAGGGCGGTGATGAAGATA+TGG | + | tig0006811:30965-30984 | Msa1344680:CDS | 50.0% | |
| GATTGGATGTTTGTGGACCG+TGG | + | tig0006811:31200-31219 | Msa1344680:three_prime_UTR | 50.0% | |
| TACGAACGGTGGGTGGGTAA+TGG | - | tig0006811:28273-28292 | None:intergenic | 55.0% | |
| ! | GTTGGTTTACGAACGGTGGG+TGG | - | tig0006811:28280-28299 | None:intergenic | 55.0% |
| CATCGGTCAAGCCGGTATTC+AGG | + | tig0006811:28520-28539 | Msa1344680:CDS | 55.0% | |
| GGTCAAGCCGGTATTCAGGT+CGG | + | tig0006811:28524-28543 | Msa1344680:CDS | 55.0% | |
| ! | CAGTCTTGTCGCTCGGCATT+TGG | - | tig0006811:29535-29554 | None:intergenic | 55.0% |
| ATGCCGAGCGACAAGACTGT+TGG | + | tig0006811:29536-29555 | Msa1344680:CDS | 55.0% | |
| ! | CCTCCAACAGTCTTGTCGCT+CGG | - | tig0006811:29542-29561 | None:intergenic | 55.0% |
| AGCGACAAGACTGTTGGAGG+TGG | + | tig0006811:29542-29561 | Msa1344680:CDS | 55.0% | |
| AGCACCAGTCTCGCTGAAGA+AGG | - | tig0006811:29585-29604 | None:intergenic | 55.0% | |
| TTCTTCAGCGAGACTGGTGC+TGG | + | tig0006811:29584-29603 | Msa1344680:CDS | 55.0% | |
| GCTGCTCAGGATGGAAGAGT+TGG | - | tig0006811:29685-29704 | None:intergenic | 55.0% | |
| CACTGATGAGCTGCTCAGGA+TGG | - | tig0006811:29694-29713 | None:intergenic | 55.0% | |
| CATCCTGAGCAGCTCATCAG+TGG | + | tig0006811:29692-29711 | Msa1344680:CDS | 55.0% | |
| TTGCCACTGATGAGCTGCTC+AGG | - | tig0006811:29698-29717 | None:intergenic | 55.0% | |
| ATGACCACGGGCGAAGTTGT+TGG | - | tig0006811:29732-29751 | None:intergenic | 55.0% | |
| ! | GTTGGAGGAGGAACTGGTTC+TGG | + | tig0006811:29947-29966 | Msa1344680:CDS | 55.0% |
| !! | GGAGGAACTGGTTCTGGTCT+TGG | + | tig0006811:29953-29972 | Msa1344680:CDS | 55.0% |
| TACTGTCTATCCCTCCCCTC+AGG | + | tig0006811:30033-30052 | Msa1344680:CDS | 55.0% | |
| AGTGTGCTCCAAGAGGGAGT+GGG | - | tig0006811:30101-30120 | None:intergenic | 55.0% | |
| AGTGGGACGCTCAATGTCGA+GGG | - | tig0006811:30176-30195 | None:intergenic | 55.0% | |
| AAGTGGGACGCTCAATGTCG+AGG | - | tig0006811:30177-30196 | None:intergenic | 55.0% | |
| ! | CCCTCGCCATGGAAAGTACA+TGG | + | tig0006811:30563-30582 | Msa1344680:CDS | 55.0% |
| GCCATGTACTTTCCATGGCG+AGG | - | tig0006811:30567-30586 | None:intergenic | 55.0% | |
| CCTTGGGAACAACATCGCCT+CGG | - | tig0006811:30605-30624 | None:intergenic | 55.0% | |
| CAGCCACCTACTGTTGTTCC+TGG | + | tig0006811:30717-30736 | Msa1344680:CDS | 55.0% | |
| CCACCAGGAACAACAGTAGG+TGG | - | tig0006811:30723-30742 | None:intergenic | 55.0% | |
| CCACCTACTGTTGTTCCTGG+TGG | + | tig0006811:30720-30739 | Msa1344680:CDS | 55.0% | |
| ! | TCCTGGTGGTGACCTTGCTA+AGG | + | tig0006811:30734-30753 | Msa1344680:CDS | 55.0% |
| ACCTTAGCAAGGTCACCACC+AGG | - | tig0006811:30738-30757 | None:intergenic | 55.0% | |
| CTGCCCTCTGTACCTTAGCA+AGG | - | tig0006811:30749-30768 | None:intergenic | 55.0% | |
| CTGGTATGTGGGTGAGGGTA+TGG | + | tig0006811:30863-30882 | Msa1344680:CDS | 55.0% | |
| ! | GTGGGTGAGGGTATGGAAGA+AGG | + | tig0006811:30870-30889 | Msa1344680:CDS | 55.0% |
| ! | CCGTGAGGATCTTGCTGCTT+TGG | + | tig0006811:30908-30927 | Msa1344680:CDS | 55.0% |
| !! | GAAGAAGTTGGTGCCGAGTC+TGG | + | tig0006811:30942-30961 | Msa1344680:CDS | 55.0% |
| TCGCTCGGCATTTGGCCATC+AGG | - | tig0006811:29527-29546 | None:intergenic | 60.0% | |
| CCGAGCGACAAGACTGTTGG+AGG | + | tig0006811:29539-29558 | Msa1344680:CDS | 60.0% | |
| ACCACGGGCGAAGTTGTTGG+CGG | - | tig0006811:29729-29748 | None:intergenic | 60.0% | |
| GAGGTGGAAACCTGAGGGGA+GGG | - | tig0006811:30046-30065 | None:intergenic | 60.0% | |
| AGAGGTGGAAACCTGAGGGG+AGG | - | tig0006811:30047-30066 | None:intergenic | 60.0% | |
| CAGTGTGCTCCAAGAGGGAG+TGG | - | tig0006811:30102-30121 | None:intergenic | 60.0% | |
| GCTAAGTGTGACCCTCGCCA+TGG | + | tig0006811:30552-30571 | Msa1344680:CDS | 60.0% | |
| CCGAGGCGATGTTGTTCCCA+AGG | + | tig0006811:30602-30621 | Msa1344680:CDS | 60.0% | |
| !! | AGTTGGTGCCGAGTCTGGTG+AGG | + | tig0006811:30947-30966 | Msa1344680:CDS | 60.0% |
| !! | GTTGGTGCCGAGTCTGGTGA+GGG | + | tig0006811:30948-30967 | Msa1344680:CDS | 60.0% |
| ATCACCGCCCTCACCAGACT+CGG | - | tig0006811:30958-30977 | None:intergenic | 60.0% | |
| CCAAGAGGGAGTGGGTGGAG+AGG | - | tig0006811:30093-30112 | None:intergenic | 65.0% | |
| CCTCTCCACCCACTCCCTCT+TGG | + | tig0006811:30090-30109 | Msa1344680:CDS | 65.0% | |
| GTGCTCCAAGAGGGAGTGGG+TGG | - | tig0006811:30098-30117 | None:intergenic | 65.0% | |
| GCCGCCAACAACTTCGCCCG+TGG | + | tig0006811:29725-29744 | Msa1344680:CDS | 70.0% | |
| ! | GGTGCCGAGTCTGGTGAGGG+CGG | + | tig0006811:30951-30970 | Msa1344680:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006811 | gene | 28267 | 31394 | 28267 | ID=Msa1344680;Name=Msa1344680 |
| tig0006811 | mRNA | 28267 | 31394 | 28267 | ID=Msa1344680-mRNA-1;Parent=Msa1344680;Name=Msa1344680-mRNA-1;_AED=0.05;_eAED=0.05;_QI=230|1|1|1|1|1|4|396|450 |
| tig0006811 | exon | 28267 | 28589 | 28267 | ID=Msa1344680-mRNA-1:exon:4648;Parent=Msa1344680-mRNA-1 |
| tig0006811 | exon | 29524 | 29758 | 29524 | ID=Msa1344680-mRNA-1:exon:4649;Parent=Msa1344680-mRNA-1 |
| tig0006811 | exon | 29855 | 30225 | 29855 | ID=Msa1344680-mRNA-1:exon:4650;Parent=Msa1344680-mRNA-1 |
| tig0006811 | exon | 30345 | 31394 | 30345 | ID=Msa1344680-mRNA-1:exon:4651;Parent=Msa1344680-mRNA-1 |
| tig0006811 | five_prime_UTR | 28267 | 28496 | 28267 | ID=Msa1344680-mRNA-1:five_prime_utr;Parent=Msa1344680-mRNA-1 |
| tig0006811 | CDS | 28497 | 28589 | 28497 | ID=Msa1344680-mRNA-1:cds;Parent=Msa1344680-mRNA-1 |
| tig0006811 | CDS | 29524 | 29758 | 29524 | ID=Msa1344680-mRNA-1:cds;Parent=Msa1344680-mRNA-1 |
| tig0006811 | CDS | 29855 | 30225 | 29855 | ID=Msa1344680-mRNA-1:cds;Parent=Msa1344680-mRNA-1 |
| tig0006811 | CDS | 30345 | 30998 | 30345 | ID=Msa1344680-mRNA-1:cds;Parent=Msa1344680-mRNA-1 |
| tig0006811 | three_prime_UTR | 30999 | 31394 | 30999 | ID=Msa1344680-mRNA-1:three_prime_utr;Parent=Msa1344680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
