AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0216520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0216520 MtrunA17_Chr2g0318031 91.145 1118 69 4 1 1111 1 1095 0.0 2041
Msa0216520 MtrunA17_Chr2g0281781 36.018 894 453 26 1 817 1 852 2.88e-138 440
Msa0216520 MtrunA17_Chr1g0187491 33.718 694 340 27 1 638 1 630 2.49e-73 266
Msa0216520 MtrunA17_Chr1g0166471 32.241 580 263 21 1 527 1 503 3.58e-61 228
Msa0216520 MtrunA17_Chr8g0344661 33.636 220 131 3 1 213 1 212 1.40e-30 131
Msa0216520 MtrunA17_Chr3g0128441 31.863 204 123 5 7 207 11 201 8.77e-19 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0216520 AT4G27430.1 39.112 1194 506 38 1 1110 1 1057 0.0 612
Msa0216520 AT4G27430.2 39.112 1194 506 38 1 1110 1 1057 0.0 612
Msa0216520 AT1G61100.2 37.130 878 393 34 1 813 1 784 1.94e-128 412
Msa0216520 AT1G61100.1 37.088 879 393 34 1 813 1 785 3.02e-128 411
Msa0216520 AT5G43310.5 31.530 869 389 31 1 811 1 721 1.63e-75 271
Msa0216520 AT5G43310.2 31.954 870 384 34 1 811 1 721 2.40e-75 272
Msa0216520 AT5G43310.4 31.530 869 389 31 1 811 1 721 3.95e-75 271
Msa0216520 AT5G43310.3 31.530 869 389 31 1 811 1 721 3.95e-75 271
Msa0216520 AT3G14172.1 42.180 211 109 4 1 206 1 203 7.52e-41 164
Msa0216520 AT5G43310.1 63.810 105 37 1 1 104 1 105 9.96e-37 151
Msa0216520 AT5G43310.1 28.165 703 335 28 134 811 221 778 7.45e-32 135
Msa0216520 AT3G14172.2 39.336 211 107 5 1 206 1 195 1.48e-34 144
Msa0216520 AT1G17360.1 35.266 207 113 3 1 204 1 189 1.61e-31 134
Msa0216520 AT1G72410.1 30.882 204 133 1 1 204 1 196 4.12e-26 117
Msa0216520 AT1G72410.2 30.882 204 133 1 1 204 1 196 4.18e-26 117
Msa0216520 AT3G14172.3 38.272 162 87 4 50 206 12 165 1.48e-21 102

Find 263 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAAAGCTCAAACTTTAA+AGG 0.136507 2_1:-62519353 None:intergenic
CCAGTTTGTTTAGCTTTAAT+TGG 0.174295 2_1:+62524826 Msa0216520:three_prime_UTR
AGACATATACACATGTATTT+TGG 0.197619 2_1:-62519165 None:intergenic
TTCACAGCAGTATGTATTAA+TGG 0.204043 2_1:-62524134 None:intergenic
TTCCGTAAGCTTATCTTCTT+TGG 0.222118 2_1:+62524323 Msa0216520:CDS
ATTTGTTTCGCTGACGCTTT+TGG 0.238140 2_1:+62520912 Msa0216520:CDS
CCATTAGATGGATGAATCTT+AGG 0.239929 2_1:-62523516 None:intergenic
AAAACAGCCAATGAAATTTC+AGG 0.242138 2_1:+62522420 Msa0216520:CDS
GTTTCTGTGAGTAGTAATTT+TGG 0.246184 2_1:+62524762 Msa0216520:three_prime_UTR
ATTTACAATACAACAAAATA+TGG 0.262958 2_1:-62524680 None:intergenic
ACCCAACACATTCTTAGATT+TGG 0.267760 2_1:+62519084 Msa0216520:five_prime_UTR
TGCCTTCAAGGAAGGCTTCT+TGG 0.271743 2_1:-62523652 None:intergenic
AAGCTAAACAAACTGGAAAA+TGG 0.272520 2_1:-62524819 None:intergenic
GCCTTCCTTGAAGGCAAATA+AGG 0.273580 2_1:+62523659 Msa0216520:CDS
ATCTGGCTCGTGGGAAATTA+AGG 0.277127 2_1:-62522905 None:intergenic
TACGCCCGTGCTTTAGTTGC+TGG 0.279322 2_1:+62520861 Msa0216520:CDS
TTCTTAGTCTCTCCATTAGA+TGG 0.291797 2_1:-62523528 None:intergenic
CTTCTTCAAGGCACTTCTTT+CGG 0.299554 2_1:-62523445 None:intergenic
ATTTGAATCTCTGAGACTTT+AGG 0.306590 2_1:-62524200 None:intergenic
CTCTTCATTTCCATCTTGAT+TGG 0.310670 2_1:-62520667 None:intergenic
TTCATTGAATTGAATTGAAT+TGG 0.310924 2_1:+62519115 Msa0216520:five_prime_UTR
TATAGATTGTAGATGAAGTT+TGG 0.313339 2_1:+62519323 Msa0216520:five_prime_UTR
CGTCTCTCAAAAGAAGATTC+TGG 0.317168 2_1:-62522372 None:intergenic
TTGCATATTCCCAGGATAAT+AGG 0.319408 2_1:-62521855 None:intergenic
CAATAATCTAACTCTATCTA+TGG 0.323289 2_1:+62519375 Msa0216520:exon
TCGGCCATGACCTCGGCATT+TGG 0.324562 2_1:-62521733 None:intergenic
TCACCTAATCAAGCAAATTC+AGG 0.324869 2_1:+62523624 Msa0216520:CDS
ATAAGATCATCCATGGATTC+TGG 0.325372 2_1:-62520891 None:intergenic
TTCTGTTCCAGTCTTCTTCA+AGG 0.325703 2_1:-62523457 None:intergenic
GACAAGTTATCTTCACTTCA+TGG 0.327367 2_1:+62524044 Msa0216520:CDS
AGTTAACAAGAACGTGAAAA+TGG 0.327689 2_1:+62519048 Msa0216520:five_prime_UTR
TTCCCTCTCTGCCACAATAA+AGG 0.329132 2_1:-62522542 None:intergenic
CACATTATGTTCTGTTGGAT+TGG 0.330308 2_1:+62519226 Msa0216520:five_prime_UTR
AAAAGAACCTTGTTCTTGTT+GGG 0.335037 2_1:-62519438 None:intergenic
TTCCTCTACCTTGTGTTTCA+AGG 0.346357 2_1:-62522206 None:intergenic
AAACCTTTGCAAGGTGGCTT+TGG 0.347703 2_1:-62519688 None:intergenic
GCTGATTCCAACGGGCAAAA+AGG 0.348123 2_1:+62522328 Msa0216520:CDS
GTATGTATTAATGGTTTGTT+AGG 0.350436 2_1:-62524125 None:intergenic
TCTTGACATGACATCAGATT+TGG 0.351205 2_1:-62523169 None:intergenic
AAGCACCATGACATGCTAAA+TGG 0.353658 2_1:+62522295 Msa0216520:CDS
TATTCTTCCTGAAATTTCAT+TGG 0.354187 2_1:-62522427 None:intergenic
TCTTGCATTGCTTGGTTACT+CGG 0.358323 2_1:-62524236 None:intergenic
GACTCGGGAAGTAAAATAAA+TGG 0.359638 2_1:+62521182 Msa0216520:CDS
CCTAAGATTCATCCATCTAA+TGG 0.363387 2_1:+62523516 Msa0216520:CDS
ATGTTATATAGTTTATATTA+CGG 0.368238 2_1:-62522108 None:intergenic
GATGATTCTACTCATGATAT+AGG 0.370285 2_1:+62522397 Msa0216520:CDS
GTTCCGTCTTCCTATTATCC+TGG 0.375217 2_1:+62521845 Msa0216520:CDS
ATTAGATACAAGATTTCTTT+CGG 0.377858 2_1:-62523055 None:intergenic
AACAGCTTCTGATATCAGTT+TGG 0.382114 2_1:+62522813 Msa0216520:CDS
ACATCTGGAATCATACTTGC+AGG 0.382829 2_1:+62521152 Msa0216520:CDS
TTAGCTCAGTAGAAAGTGTT+TGG 0.387308 2_1:+62524494 Msa0216520:three_prime_UTR
GGACCTGAATTTGCTTGATT+AGG 0.392454 2_1:-62523627 None:intergenic
TTGCCTTACTTAAGGACATC+TGG 0.394849 2_1:+62521137 Msa0216520:CDS
CAATCCACAACAGGAAGAAA+TGG 0.395001 2_1:+62524261 Msa0216520:CDS
AACCCGTATTGCCTTACTTA+AGG 0.395294 2_1:+62521129 Msa0216520:CDS
GTCAAGAAGTAGAACATTGC+CGG 0.397855 2_1:+62523185 Msa0216520:CDS
CCAATTAAAGCTAAACAAAC+TGG 0.398229 2_1:-62524826 None:intergenic
AAACAAGAAATCTCAGGTAT+TGG 0.398657 2_1:+62521934 Msa0216520:CDS
TGTGAATTCAAAGGTGAATC+AGG 0.398868 2_1:+62524151 Msa0216520:CDS
GAAGATGTGCATAAAACAAA+AGG 0.403544 2_1:+62523735 Msa0216520:CDS
AAACGGGGATCGCTCTGAAA+TGG 0.412282 2_1:+62521886 Msa0216520:CDS
CTTAGTCTTTGCGCTACTCT+TGG 0.413113 2_1:-62523769 None:intergenic
AGAGGAAGCTGTTGCGTCAC+TGG 0.413854 2_1:+62522222 Msa0216520:CDS
GAAAAGAACCTTGTTCTTGT+TGG 0.414044 2_1:-62519439 None:intergenic
AGGTACCTTATTTGCCTTCA+AGG 0.415479 2_1:-62523664 None:intergenic
AACCAAGAAGCCTTCCTTGA+AGG 0.415998 2_1:+62523650 Msa0216520:CDS
CATGGAGCATATGTAGATTC+AGG 0.421322 2_1:-62519660 None:intergenic
TATTGTGGCAGAGAGGGAAT+TGG 0.425986 2_1:+62522546 Msa0216520:CDS
TTCAAGGAAGGCTTCTTGGT+TGG 0.426938 2_1:-62523648 None:intergenic
ACTAACACATTATGTTCTGT+TGG 0.430919 2_1:+62519221 Msa0216520:five_prime_UTR
ATCTCAGAGAAATGATGAAT+CGG 0.432098 2_1:+62522666 Msa0216520:CDS
CTTTGACTTCAGCAAGGAAA+GGG 0.432104 2_1:+62523490 Msa0216520:CDS
TTATCCATTTCTTCCTGTTG+TGG 0.432151 2_1:-62524265 None:intergenic
AACCTAAAGCAAAACTCTCT+TGG 0.434391 2_1:+62519019 Msa0216520:five_prime_UTR
CATGATTCAAGCTCGACCAT+TGG 0.437416 2_1:+62522771 Msa0216520:CDS
GTTAATGAAAGACTAGCTTC+TGG 0.438563 2_1:+62519558 Msa0216520:CDS
TGTGACTTGATGATTGTTGC+TGG 0.439597 2_1:+62519531 Msa0216520:CDS
AGCTTATCTTCTTTGGAAGA+AGG 0.440902 2_1:+62524330 Msa0216520:CDS
ATATGCAATGGCCTCCAAAC+GGG 0.441469 2_1:+62521870 Msa0216520:CDS
AAGGAGATTGTGCAGATTGA+AGG 0.443294 2_1:+62520305 Msa0216520:CDS
ATTTCAGAGCGATCCCCGTT+TGG 0.446504 2_1:-62521884 None:intergenic
TTCATTTCCATCTTGATTGG+AGG 0.446898 2_1:-62520664 None:intergenic
GTTCTCTTTATCCATGCTCT+TGG 0.452777 2_1:+62524432 Msa0216520:three_prime_UTR
GTAGCTGTAGACCTGCTTCC+CGG 0.454447 2_1:-62523204 None:intergenic
TGGAGCTGTTTCTTCAGTAA+AGG 0.456678 2_1:-62523684 None:intergenic
AAGGAGCTGAAGAACCTTTG+TGG 0.456794 2_1:+62524349 Msa0216520:exon
ATCCAATGGAGACGGAGAAA+AGG 0.461306 2_1:+62522129 Msa0216520:CDS
ATATTCTTTCACAATGTTCA+AGG 0.463350 2_1:+62524737 Msa0216520:three_prime_UTR
GAACAAAACAACAACAATCA+TGG 0.467082 2_1:+62523849 Msa0216520:CDS
TCCAAATCTAAGAATGTGTT+GGG 0.471893 2_1:-62519085 None:intergenic
ATGCCGAGGGGCGTGTCAAA+AGG 0.472016 2_1:+62520631 Msa0216520:CDS
TGCAAGAATCAATCCACAAC+AGG 0.472379 2_1:+62524252 Msa0216520:CDS
AAGAATAAGACCATGTGGAT+TGG 0.472669 2_1:+62524613 Msa0216520:three_prime_UTR
TTTGTGGCATCAGGTTTGAC+AGG 0.473208 2_1:-62523819 None:intergenic
ATTCCAGATGTCCTTAAGTA+AGG 0.474368 2_1:-62521140 None:intergenic
GGATTGATTCTTGCATTGCT+TGG 0.475211 2_1:-62524244 None:intergenic
AGAGAGGGAATTGGACAGTA+AGG 0.477932 2_1:+62522555 Msa0216520:CDS
GGGGCCAAATGCCGAGGTCA+TGG 0.478199 2_1:+62521729 Msa0216520:CDS
TAAGAATGAAATCAAGGCTT+CGG 0.478582 2_1:+62523788 Msa0216520:CDS
ACAAACCTCTCTATAACTTC+TGG 0.480450 2_1:-62520272 None:intergenic
AAACCTTCTGCTGAGTTACT+CGG 0.483075 2_1:-62523602 None:intergenic
TACCAGGATACATGTATCCT+TGG 0.483817 2_1:-62521817 None:intergenic
GATTGTCTAGAACACGTTGA+AGG 0.488204 2_1:-62520803 None:intergenic
TGTCCTTAAGTAAGGCAATA+CGG 0.488371 2_1:-62521132 None:intergenic
GAGGTTTGTGACCATAGAAA+AGG 0.488541 2_1:+62520286 Msa0216520:CDS
GTAGAACATTGCCGGGAAGC+AGG 0.488759 2_1:+62523193 Msa0216520:CDS
AAAATACTGGAGCGAAATCT+GGG 0.489271 2_1:+62523097 Msa0216520:CDS
AAATATCTTGAATGTTTCTC+CGG 0.489326 2_1:-62523906 None:intergenic
CAAGGAATGCTGATTCCAAC+GGG 0.490459 2_1:+62522320 Msa0216520:CDS
TTCCGTCTTCCTATTATCCT+GGG 0.490463 2_1:+62521846 Msa0216520:CDS
AGAACCATGAGGAGATCATC+TGG 0.490562 2_1:-62522922 None:intergenic
AATCATGGTTTGAAAGACAT+TGG 0.490701 2_1:+62523864 Msa0216520:CDS
GTCCTTAAGTAAGGCAATAC+GGG 0.490751 2_1:-62521131 None:intergenic
TTCCAAAGAAGATAAGCTTA+CGG 0.490831 2_1:-62524325 None:intergenic
ATCCAAATCTAAGAATGTGT+TGG 0.495526 2_1:-62519086 None:intergenic
TTGGAATTGCTATCATACTA+AGG 0.496104 2_1:+62524632 Msa0216520:three_prime_UTR
TCCAATGGAGACGGAGAAAA+GGG 0.496676 2_1:+62522130 Msa0216520:CDS
AGAAGTGCCTTGAAGAAGAC+TGG 0.497341 2_1:+62523450 Msa0216520:CDS
GCAAAAGATCAGATTTCAAA+AGG 0.497438 2_1:+62519615 Msa0216520:CDS
TACGAAGAGCAAATCGGAAA+AGG 0.497817 2_1:+62523224 Msa0216520:CDS
TGGCCCCTTCCATCAGATGA+TGG 0.498715 2_1:-62521713 None:intergenic
GAATGCAGCACCTTGGAGAA+TGG 0.498807 2_1:+62522969 Msa0216520:CDS
AGAATGTGTTGGGTGTGGTT+AGG 0.499088 2_1:-62519075 None:intergenic
ACCTTATTTGCCTTCAAGGA+AGG 0.500268 2_1:-62523660 None:intergenic
TGGGAAAATTTCAAGTAAAG+AGG 0.504134 2_1:+62523116 Msa0216520:CDS
GGAGGCCATTGCATATTCCC+AGG 0.511743 2_1:-62521863 None:intergenic
TATGGAAAATGTATTATACT+TGG 0.512294 2_1:-62524662 None:intergenic
TTCAAATGATTCCTTTATTG+TGG 0.513484 2_1:+62522531 Msa0216520:CDS
AGCACCTTGGAGAATGGAAA+TGG 0.515394 2_1:+62522975 Msa0216520:CDS
GGCAGTTGCAAGGCGATCGA+TGG 0.516940 2_1:-62523580 None:intergenic
ATGACATGCTAAATGGTTCA+AGG 0.520262 2_1:+62522302 Msa0216520:CDS
AACTGAACAAACCAGTCCTT+AGG 0.520450 2_1:+62523550 Msa0216520:CDS
ATGTCGAAACTTGCATGGCT+TGG 0.522390 2_1:-62521236 None:intergenic
AATATGCAATGGCCTCCAAA+CGG 0.523303 2_1:+62521869 Msa0216520:CDS
TTAATGAAAGACTAGCTTCT+GGG 0.524068 2_1:+62519559 Msa0216520:CDS
TTGGTTATTCAATATTTCAA+AGG 0.524836 2_1:+62524451 Msa0216520:three_prime_UTR
ATGTACTGTGGATGATGGTT+CGG 0.526195 2_1:-62521752 None:intergenic
TTCCTTTATTGTGGCAGAGA+GGG 0.526445 2_1:+62522540 Msa0216520:CDS
ATGAGCAAGAAGTTTGAGAA+TGG 0.527708 2_1:+62522454 Msa0216520:CDS
AAGACGAGTCCGTGCGAAGT+TGG 0.528627 2_1:-62523965 None:intergenic
TTCACAAACGGTACACAAGA+AGG 0.529595 2_1:+62522862 Msa0216520:CDS
TCTTTGACTTCAGCAAGGAA+AGG 0.531447 2_1:+62523489 Msa0216520:CDS
TTGAACCATTTAGCATGTCA+TGG 0.531723 2_1:-62522300 None:intergenic
GGATACATGTATCCTTGGTA+TGG 0.531774 2_1:-62521812 None:intergenic
AAAGACTAAGAATGAAATCA+AGG 0.531926 2_1:+62523782 Msa0216520:CDS
GATCGATGGTGGAACTCCTA+AGG 0.533024 2_1:-62523566 None:intergenic
AATGAGGAAGAATTTATCAA+TGG 0.535620 2_1:+62522178 Msa0216520:CDS
ACTTTCTACTGAGCTAAGAA+TGG 0.537768 2_1:-62524488 None:intergenic
GAAGACGGAACCTGCATACC+AGG 0.538054 2_1:-62521833 None:intergenic
TCTCAGAGAAATGATGAATC+GGG 0.538579 2_1:+62522667 Msa0216520:CDS
TGAAGGGAGTTTGTCGAATG+AGG 0.539941 2_1:+62522162 Msa0216520:CDS
TACCAAGGATACATGTATCC+TGG 0.541094 2_1:+62521815 Msa0216520:CDS
ACTATTTCCTCCAATCAAGA+TGG 0.542190 2_1:+62520657 Msa0216520:CDS
ATACATGTATCCTGGTATGC+AGG 0.542557 2_1:+62521823 Msa0216520:CDS
AACACCATCATCTGATGGAA+GGG 0.544199 2_1:+62521709 Msa0216520:CDS
GGCCAATGTCGAAACTTGCA+TGG 0.544950 2_1:-62521241 None:intergenic
TACAGCTACGAAGAGCAAAT+CGG 0.545547 2_1:+62523218 Msa0216520:CDS
TCAGAGCGATCCCCGTTTGG+AGG 0.546490 2_1:-62521881 None:intergenic
AAAGAACCTTGTTCTTGTTG+GGG 0.547167 2_1:-62519437 None:intergenic
ATAAACTATATAACATCCAA+TGG 0.548118 2_1:+62522115 Msa0216520:CDS
ATGTTTCTCCGGTGATGCCT+TGG 0.550614 2_1:-62523895 None:intergenic
TTCCTTGAAACACAAGGTAG+AGG 0.550703 2_1:+62522204 Msa0216520:CDS
GGATGAGATTGCAGCCATGC+AGG 0.550747 2_1:+62521097 Msa0216520:CDS
AAGATGTGCATAAAACAAAA+GGG 0.552116 2_1:+62523736 Msa0216520:CDS
GCATGATCAAGATAAGAACT+TGG 0.553572 2_1:-62519400 None:intergenic
AGTGCTGACCAAGGCATCAC+CGG 0.554150 2_1:+62523887 Msa0216520:CDS
TCAAGAAGTAGAACATTGCC+GGG 0.554753 2_1:+62523186 Msa0216520:CDS
AACCTTCTGCTGAGTTACTC+GGG 0.555699 2_1:-62523601 None:intergenic
TACAGCAGAATGCAGCACCT+TGG 0.558825 2_1:+62522962 Msa0216520:CDS
GTTCAAACACCATCATCTGA+TGG 0.561192 2_1:+62521704 Msa0216520:CDS
GCAAGTTTCGACATTGGCCA+AGG 0.562257 2_1:+62521245 Msa0216520:CDS
GAATGAAGACAAGCTGTGGA+TGG 0.564189 2_1:+62521076 Msa0216520:CDS
AGTTTGGTTTCAGACGTTGT+CGG 0.566700 2_1:+62522829 Msa0216520:CDS
TGATGGTTCGGCCATGACCT+CGG 0.567836 2_1:-62521740 None:intergenic
GAGTTACTCGGGCAGTTGCA+AGG 0.567913 2_1:-62523590 None:intergenic
TCAAGGAATGCTGATTCCAA+CGG 0.568811 2_1:+62522319 Msa0216520:CDS
AGCCATGCAAGTTTCGACAT+TGG 0.568946 2_1:+62521239 Msa0216520:CDS
GAATTAAATTGATGTTCCAA+TGG 0.568953 2_1:-62522787 None:intergenic
ATTGCTTGGTTACTCGGCGG+AGG 0.570118 2_1:-62524230 None:intergenic
AGATAACAACAATTCCTCGC+TGG 0.570326 2_1:-62522647 None:intergenic
AATCTTGTATCTAATCATGA+AGG 0.570547 2_1:+62523063 Msa0216520:CDS
CGTGTTGAATATTTCAACGA+AGG 0.570645 2_1:+62522586 Msa0216520:CDS
TATTTCAACGAAGGGAAGGA+TGG 0.570660 2_1:+62522595 Msa0216520:CDS
AAACACCATCATCTGATGGA+AGG 0.571552 2_1:+62521708 Msa0216520:CDS
CATTTAAGGTGAGAAACAAA+CGG 0.571866 2_1:-62519591 None:intergenic
AAATCCAGCAACTAAAGCAC+GGG 0.574101 2_1:-62520865 None:intergenic
GATGGTGTTTGAACTGATGC+TGG 0.577297 2_1:-62521695 None:intergenic
CGTCTTCGCAACAAGAAGCA+TGG 0.577721 2_1:+62522058 Msa0216520:CDS
TTATCCATTTCCATTCTCCA+AGG 0.577841 2_1:-62522979 None:intergenic
ACTTGCAGGTGAAGATGACT+CGG 0.578585 2_1:+62521166 Msa0216520:CDS
CTGAATCTACATATGCTCCA+TGG 0.579695 2_1:+62519661 Msa0216520:CDS
GGGAAGTAAAATAAATGGCA+CGG 0.579736 2_1:+62521187 Msa0216520:CDS
GAAACAAATAAGATCATCCA+TGG 0.580905 2_1:-62520898 None:intergenic
GGAAGTAAAATAAATGGCAC+GGG 0.582458 2_1:+62521188 Msa0216520:CDS
TCACCAAAGCCACCTTGCAA+AGG 0.584782 2_1:+62519685 Msa0216520:CDS
TACATGTATCCTTGGTATGG+AGG 0.585915 2_1:-62521809 None:intergenic
TGAATATTTCAACGAAGGGA+AGG 0.586689 2_1:+62522591 Msa0216520:CDS
AAAAGAATGAAGACAAGCTG+TGG 0.587370 2_1:+62521072 Msa0216520:CDS
ATGTGTTGGGTGTGGTTAGG+AGG 0.588238 2_1:-62519072 None:intergenic
GCAAGAAGTTTGAGAATGGA+AGG 0.588781 2_1:+62522458 Msa0216520:CDS
GACTCTTCAAAAGTAGCGAA+AGG 0.590628 2_1:+62524299 Msa0216520:CDS
GAAAAGGGTAGTATCACTGA+AGG 0.594222 2_1:+62522145 Msa0216520:CDS
GTGTTGAATATTTCAACGAA+GGG 0.597338 2_1:+62522587 Msa0216520:CDS
ATGGTGGAACTCCTAAGGAC+TGG 0.598531 2_1:-62523561 None:intergenic
AAAATCCAGCAACTAAAGCA+CGG 0.599026 2_1:-62520866 None:intergenic
ACATACTGCTGTGAATTCAA+AGG 0.601032 2_1:+62524142 Msa0216520:CDS
GAGAAGAGTTAATGTTGCAG+CGG 0.601976 2_1:+62523409 Msa0216520:CDS
ATCTAAGAATGTGTTGGGTG+TGG 0.602955 2_1:-62519080 None:intergenic
AACTCACCCCAACAAGAACA+AGG 0.602994 2_1:+62519431 Msa0216520:CDS
TGCCCGAGTAACTCAGCAGA+AGG 0.603687 2_1:+62523599 Msa0216520:CDS
AGTCAATCAAATGAAGCAGA+AGG 0.604743 2_1:+62520332 Msa0216520:CDS
GGTGCGGCTGAATTCACAAA+CGG 0.605269 2_1:+62522850 Msa0216520:CDS
ACACCATCATCTGATGGAAG+GGG 0.607256 2_1:+62521710 Msa0216520:CDS
TGAGGAGATCATCTGGCTCG+TGG 0.608106 2_1:-62522915 None:intergenic
AGTTGCAAGGCGATCGATGG+TGG 0.608540 2_1:-62523577 None:intergenic
GAGGAGATCATCTGGCTCGT+GGG 0.610794 2_1:-62522914 None:intergenic
AGACTTCTTTGACTTCAGCA+AGG 0.611959 2_1:+62523484 Msa0216520:CDS
AGGAAATGTGTCATATGCCG+AGG 0.612975 2_1:+62520617 Msa0216520:intron
TGTGAATGTACTGTGGATGA+TGG 0.613203 2_1:-62521757 None:intergenic
CGAGCCAGATGATCTCCTCA+TGG 0.614234 2_1:+62522918 Msa0216520:CDS
GGTTTCAGACGTTGTCGGTG+CGG 0.614474 2_1:+62522834 Msa0216520:CDS
AAATATCAGCCAACTTCGCA+CGG 0.615028 2_1:+62523956 Msa0216520:CDS
AAAGATCAGATTTCAAAAGG+TGG 0.615886 2_1:+62519618 Msa0216520:CDS
GGAAATGTGTCATATGCCGA+GGG 0.617221 2_1:+62520618 Msa0216520:intron
ATATTGAATAACCAAGAGCA+TGG 0.617616 2_1:-62524443 None:intergenic
ATTATCCTGGGAATATGCAA+TGG 0.619307 2_1:+62521858 Msa0216520:CDS
GCTTTGCAAAGAACAAGCAA+TGG 0.626293 2_1:+62520836 Msa0216520:CDS
TATGCAATGGCCTCCAAACG+GGG 0.626868 2_1:+62521871 Msa0216520:CDS
AGTCATGATCATGCATTGAG+AGG 0.627575 2_1:+62523993 Msa0216520:CDS
GAGAGGGAATTGGACAGTAA+GGG 0.627614 2_1:+62522556 Msa0216520:CDS
TATATAACATCCAATGGAGA+CGG 0.628010 2_1:+62522121 Msa0216520:CDS
TAGTGACGTCTGCTTCGTGG+TGG 0.628728 2_1:-62522495 None:intergenic
TTCCCAGGATAATAGGAAGA+CGG 0.630202 2_1:-62521848 None:intergenic
AGCAACTAAAGCACGGGCGT+AGG 0.633124 2_1:-62520859 None:intergenic
ATGGAAGGGGCCAAATGCCG+AGG 0.633588 2_1:+62521723 Msa0216520:CDS
TTGTTTCTTATGCTGACGAG+AGG 0.636767 2_1:-62522263 None:intergenic
ATGGAAATGAAGAGAACTCG+AGG 0.639282 2_1:+62520676 Msa0216520:CDS
AGATTCAGGACATAGAGTGA+TGG 0.644079 2_1:-62519646 None:intergenic
GACTTGATGATTGTTGCTGG+TGG 0.645522 2_1:+62519534 Msa0216520:CDS
ATCATGTCATTATTATGTCG+AGG 0.648211 2_1:-62524080 None:intergenic
AGCATGGAAAGAAGTCGTCA+AGG 0.649026 2_1:+62522074 Msa0216520:CDS
GAAGAAATGGATAAATGATG+AGG 0.650351 2_1:+62524274 Msa0216520:CDS
TGCATTGCTTGGTTACTCGG+CGG 0.650770 2_1:-62524233 None:intergenic
ATTCCTTTATTGTGGCAGAG+AGG 0.650977 2_1:+62522539 Msa0216520:CDS
TGGAAATTCCTTGAAACACA+AGG 0.651370 2_1:+62522198 Msa0216520:CDS
ACACACTCATTCATGTGACA+TGG 0.654348 2_1:+62524543 Msa0216520:three_prime_UTR
CAACAAACGCCTCCATACCA+AGG 0.657689 2_1:+62521800 Msa0216520:CDS
TGGAGTTGAATCAGAAACTG+AGG 0.660489 2_1:-62521216 None:intergenic
GCACTCCAGAAGTTATAGAG+AGG 0.660533 2_1:+62520267 Msa0216520:CDS
TGAAAATTGTGAATGTACTG+TGG 0.661098 2_1:-62521764 None:intergenic
GAAATGGATAAATGATGAGG+CGG 0.662867 2_1:+62524277 Msa0216520:CDS
AGACATTGGAGTGCTGACCA+AGG 0.667263 2_1:+62523878 Msa0216520:CDS
CTTGCAGGTGAAGATGACTC+GGG 0.668791 2_1:+62521167 Msa0216520:CDS
AAAAGGGTAGTATCACTGAA+GGG 0.675760 2_1:+62522146 Msa0216520:CDS
ATTATAAGAATAAGACCATG+TGG 0.680429 2_1:+62524608 Msa0216520:three_prime_UTR
GGGTTGCGAAGACACCTGCA+TGG 0.691437 2_1:-62521111 None:intergenic
AAGGTGGCTTTGGTGAACCA+TGG 0.696142 2_1:-62519678 None:intergenic
CATGTGACATGGTAATCATG+TGG 0.696431 2_1:+62524554 Msa0216520:three_prime_UTR
GATAGCAATTCCAATCCACA+TGG 0.699533 2_1:-62524623 None:intergenic
GACAAAGAAAATTACCAGCG+AGG 0.702798 2_1:+62522633 Msa0216520:CDS
ACAATCTATAATGCTTCACA+TGG 0.709087 2_1:-62519310 None:intergenic
AATCACGATCGAGAACCATG+AGG 0.748541 2_1:-62522933 None:intergenic
GAAATGTGTCATATGCCGAG+GGG 0.758314 2_1:+62520619 Msa0216520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTCTATCTTT+TGG + chr2_1:62519711-62519730 Msa0216520:intron 10.0%
!! ATAAAATATATCATATAGTT+GGG + chr2_1:62521363-62521382 Msa0216520:intron 10.0%
!! ATGTTATATAGTTTATATTA+CGG - chr2_1:62522111-62522130 None:intergenic 10.0%
!!! TAATTGTTTTTGTTTTTTGT+TGG + chr2_1:62519478-62519497 Msa0216520:intron 15.0%
!! AAACATAGATGAAAAATTAT+CGG - chr2_1:62520769-62520788 None:intergenic 15.0%
!!! AAATGATTGTTCTTTTTTTT+AGG - chr2_1:62521322-62521341 None:intergenic 15.0%
!! GATAAAATATATCATATAGT+TGG + chr2_1:62521362-62521381 Msa0216520:intron 15.0%
!! TTCCTATTAATTGAAAATAA+AGG - chr2_1:62523370-62523389 None:intergenic 15.0%
!! ATTTACAATACAACAAAATA+TGG - chr2_1:62524683-62524702 None:intergenic 15.0%
!! TTCATTGAATTGAATTGAAT+TGG + chr2_1:62519115-62519134 Msa0216520:five_prime_UTR 20.0%
!!! CAATTATTTTTGTAAAGTTG+AGG - chr2_1:62519464-62519483 None:intergenic 20.0%
!! AAAAAAAAAAAACCTTTGCA+AGG - chr2_1:62519700-62519719 None:intergenic 20.0%
!!! TTGGTTTTTGTAACAATTAT+TGG + chr2_1:62519730-62519749 Msa0216520:intron 20.0%
!!! ATTATTGGTTTTTGATAGAT+TGG + chr2_1:62519745-62519764 Msa0216520:intron 20.0%
!!! AAATATTTTCAATGATCTGA+TGG + chr2_1:62519864-62519883 Msa0216520:intron 20.0%
!!! TGTGTTGGTTTATTTTATAT+AGG + chr2_1:62520228-62520247 Msa0216520:intron 20.0%
!! TAATTAAGAACAATGATGAA+CGG - chr2_1:62520402-62520421 None:intergenic 20.0%
!!! TTTCATCTATGTTTTATTGT+AGG + chr2_1:62520775-62520794 Msa0216520:intron 20.0%
!!! TTCATCTATGTTTTATTGTA+GGG + chr2_1:62520776-62520795 Msa0216520:intron 20.0%
!!! AGAAAAATGTACTGTTTTAA+TGG - chr2_1:62520988-62521007 None:intergenic 20.0%
!! CTATACTTGAATTAATAGAA+AGG - chr2_1:62521465-62521484 None:intergenic 20.0%
!! CTTTCTATTAATTCAAGTAT+AGG + chr2_1:62521463-62521482 Msa0216520:intron 20.0%
!! ATAAACTATATAACATCCAA+TGG + chr2_1:62522115-62522134 Msa0216520:CDS 20.0%
!! ATTAGATACAAGATTTCTTT+CGG - chr2_1:62523058-62523077 None:intergenic 20.0%
!! GAAAGCTATAGATAATATTA+AGG - chr2_1:62523306-62523325 None:intergenic 20.0%
!!! GACCTTTATTTTCAATTAAT+AGG + chr2_1:62523365-62523384 Msa0216520:intron 20.0%
!! TTGGTTATTCAATATTTCAA+AGG + chr2_1:62524451-62524470 Msa0216520:three_prime_UTR 20.0%
!! TATGGAAAATGTATTATACT+TGG - chr2_1:62524665-62524684 None:intergenic 20.0%
!! AGACATATACACATGTATTT+TGG - chr2_1:62519168-62519187 None:intergenic 25.0%
!!! ATTTGCTGAGTTTTAAAAGT+GGG - chr2_1:62519253-62519272 None:intergenic 25.0%
!!! AATTTGCTGAGTTTTAAAAG+TGG - chr2_1:62519254-62519273 None:intergenic 25.0%
! TATAGATTGTAGATGAAGTT+TGG + chr2_1:62519323-62519342 Msa0216520:five_prime_UTR 25.0%
! CAATAATCTAACTCTATCTA+TGG + chr2_1:62519375-62519394 Msa0216520:exon 25.0%
! ATTGTAGTGGCAATATATAA+AGG - chr2_1:62520142-62520161 None:intergenic 25.0%
!!! ACCATAGTTTTAAATTGTAG+TGG - chr2_1:62520155-62520174 None:intergenic 25.0%
! TTAGCAAATAGTATCTTTGT+AGG + chr2_1:62520550-62520569 Msa0216520:intron 25.0%
! AACAATACTATGTGATTAAC+AGG + chr2_1:62520597-62520616 Msa0216520:intron 25.0%
! ATATCTAATTTACTGCTAAG+TGG - chr2_1:62521555-62521574 None:intergenic 25.0%
! ACAACTTAGATATCTTGTAA+AGG + chr2_1:62521620-62521639 Msa0216520:intron 25.0%
! AATGAGGAAGAATTTATCAA+TGG + chr2_1:62522178-62522197 Msa0216520:CDS 25.0%
! TATTCTTCCTGAAATTTCAT+TGG - chr2_1:62522430-62522449 None:intergenic 25.0%
! TTCAAATGATTCCTTTATTG+TGG + chr2_1:62522531-62522550 Msa0216520:CDS 25.0%
! GAATTAAATTGATGTTCCAA+TGG - chr2_1:62522790-62522809 None:intergenic 25.0%
! AATCTTGTATCTAATCATGA+AGG + chr2_1:62523063-62523082 Msa0216520:CDS 25.0%
! AAGACAAAGTCACATATATA+TGG - chr2_1:62523282-62523301 None:intergenic 25.0%
!! TTGAAGATTTCACTTCTTTT+TGG - chr2_1:62523707-62523726 None:intergenic 25.0%
! AAGATGTGCATAAAACAAAA+GGG + chr2_1:62523736-62523755 Msa0216520:CDS 25.0%
! AAAGACTAAGAATGAAATCA+AGG + chr2_1:62523782-62523801 Msa0216520:CDS 25.0%
! AAATATCTTGAATGTTTCTC+CGG - chr2_1:62523909-62523928 None:intergenic 25.0%
!!! GTATGTATTAATGGTTTGTT+AGG - chr2_1:62524128-62524147 None:intergenic 25.0%
! ATTATAAGAATAAGACCATG+TGG + chr2_1:62524608-62524627 Msa0216520:three_prime_UTR 25.0%
! ATATTCTTTCACAATGTTCA+AGG + chr2_1:62524737-62524756 Msa0216520:three_prime_UTR 25.0%
AGTTAACAAGAACGTGAAAA+TGG + chr2_1:62519048-62519067 Msa0216520:five_prime_UTR 30.0%
TCCAAATCTAAGAATGTGTT+GGG - chr2_1:62519088-62519107 None:intergenic 30.0%
ATCCAAATCTAAGAATGTGT+TGG - chr2_1:62519089-62519108 None:intergenic 30.0%
ACTAACACATTATGTTCTGT+TGG + chr2_1:62519221-62519240 Msa0216520:five_prime_UTR 30.0%
ACAATCTATAATGCTTCACA+TGG - chr2_1:62519313-62519332 None:intergenic 30.0%
GTTGAAAGCTCAAACTTTAA+AGG - chr2_1:62519356-62519375 None:intergenic 30.0%
AAAAGAACCTTGTTCTTGTT+GGG - chr2_1:62519441-62519460 None:intergenic 30.0%
!! TTAATGAAAGACTAGCTTCT+GGG + chr2_1:62519559-62519578 Msa0216520:CDS 30.0%
! CATTTAAGGTGAGAAACAAA+CGG - chr2_1:62519594-62519613 None:intergenic 30.0%
! TCTGATCTTTTGCACATTTA+AGG - chr2_1:62519608-62519627 None:intergenic 30.0%
GCAAAAGATCAGATTTCAAA+AGG + chr2_1:62519615-62519634 Msa0216520:CDS 30.0%
AAAGATCAGATTTCAAAAGG+TGG + chr2_1:62519618-62519637 Msa0216520:CDS 30.0%
AAAAAAAAACCTTTGCAAGG+TGG - chr2_1:62519697-62519716 None:intergenic 30.0%
! TGTGACTTTGGAAATAGTTA+TGG + chr2_1:62519833-62519852 Msa0216520:intron 30.0%
!!! ATGAGTTTTTTATCTCACCA+AGG + chr2_1:62519972-62519991 Msa0216520:intron 30.0%
ACTAAAAGAGGATTAATCCT+TGG - chr2_1:62519992-62520011 None:intergenic 30.0%
!! TTAATCCTCTTTTAGTTACC+AGG + chr2_1:62519996-62520015 Msa0216520:intron 30.0%
!! TAATCCTCTTTTAGTTACCA+GGG + chr2_1:62519997-62520016 Msa0216520:intron 30.0%
! GCCACTACAATTTAAAACTA+TGG + chr2_1:62520151-62520170 Msa0216520:intron 30.0%
ACAATGATGTTTGTTTGTGT+TGG + chr2_1:62520213-62520232 Msa0216520:intron 30.0%
AACAATGATGAACGGAATAA+AGG - chr2_1:62520394-62520413 None:intergenic 30.0%
TTCTTAATTAAACTTCCTCG+TGG + chr2_1:62520412-62520431 Msa0216520:intron 30.0%
AGATGTGGGAAAAAAAATAG+CGG - chr2_1:62520469-62520488 None:intergenic 30.0%
CAAAGATGTGTGCATATATA+AGG - chr2_1:62520717-62520736 None:intergenic 30.0%
GAAACAAATAAGATCATCCA+TGG - chr2_1:62520901-62520920 None:intergenic 30.0%
TATAATTTCCTGTCATGTGT+AGG + chr2_1:62521015-62521034 Msa0216520:intron 30.0%
ATAATTTCCTGTCATGTGTA+GGG + chr2_1:62521016-62521035 Msa0216520:intron 30.0%
!! TTTTAGGAACACTTTTACTC+AGG - chr2_1:62521306-62521325 None:intergenic 30.0%
TACAACTTGTGTCTAAATAC+TGG + chr2_1:62521496-62521515 Msa0216520:intron 30.0%
!!! CCAGTATTTTTTTTGAAGGA+TGG - chr2_1:62521527-62521546 None:intergenic 30.0%
CCATCCTTCAAAAAAAATAC+TGG + chr2_1:62521524-62521543 Msa0216520:intron 30.0%
!!! CAGTCCAGTATTTTTTTTGA+AGG - chr2_1:62521531-62521550 None:intergenic 30.0%
CAATAAGAGTAACAAACTTC+TGG - chr2_1:62521648-62521667 None:intergenic 30.0%
TGAAAATTGTGAATGTACTG+TGG - chr2_1:62521767-62521786 None:intergenic 30.0%
! ACAGTACATTCACAATTTTC+AGG + chr2_1:62521766-62521785 Msa0216520:CDS 30.0%
! CAGTACATTCACAATTTTCA+GGG + chr2_1:62521767-62521786 Msa0216520:CDS 30.0%
GAAGAAAAACAAGAAATCTC+AGG + chr2_1:62521928-62521947 Msa0216520:CDS 30.0%
AAACAAGAAATCTCAGGTAT+TGG + chr2_1:62521934-62521953 Msa0216520:CDS 30.0%
AAGCAAAAAGAACTCTTCAA+CGG + chr2_1:62522033-62522052 Msa0216520:CDS 30.0%
TATATAACATCCAATGGAGA+CGG + chr2_1:62522121-62522140 Msa0216520:CDS 30.0%
GCAAAAAGGTAATAACAACT+GGG + chr2_1:62522342-62522361 Msa0216520:CDS 30.0%
GATGATTCTACTCATGATAT+AGG + chr2_1:62522397-62522416 Msa0216520:CDS 30.0%
AAAACAGCCAATGAAATTTC+AGG + chr2_1:62522420-62522439 Msa0216520:CDS 30.0%
GTGTTGAATATTTCAACGAA+GGG + chr2_1:62522587-62522606 Msa0216520:CDS 30.0%
ATCTCAGAGAAATGATGAAT+CGG + chr2_1:62522666-62522685 Msa0216520:CDS 30.0%
CGAAGCTAACAAAAAGATTT+CGG + chr2_1:62523023-62523042 Msa0216520:CDS 30.0%
! TGGGAAAATTTCAAGTAAAG+AGG + chr2_1:62523116-62523135 Msa0216520:CDS 30.0%
!!! GATTTGGTTTTAGATGCATT+TGG - chr2_1:62523156-62523175 None:intergenic 30.0%
GCTTTCATTTGCAAATTCAT+AGG + chr2_1:62523320-62523339 Msa0216520:intron 30.0%
GAAGATGTGCATAAAACAAA+AGG + chr2_1:62523735-62523754 Msa0216520:CDS 30.0%
TAAGAATGAAATCAAGGCTT+CGG + chr2_1:62523788-62523807 Msa0216520:CDS 30.0%
GAACAAAACAACAACAATCA+TGG + chr2_1:62523849-62523868 Msa0216520:CDS 30.0%
AATCATGGTTTGAAAGACAT+TGG + chr2_1:62523864-62523883 Msa0216520:CDS 30.0%
ATCATGTCATTATTATGTCG+AGG - chr2_1:62524083-62524102 None:intergenic 30.0%
TTCACAGCAGTATGTATTAA+TGG - chr2_1:62524137-62524156 None:intergenic 30.0%
!! ATTTGAATCTCTGAGACTTT+AGG - chr2_1:62524203-62524222 None:intergenic 30.0%
GAAGAAATGGATAAATGATG+AGG + chr2_1:62524274-62524293 Msa0216520:CDS 30.0%
TTCCAAAGAAGATAAGCTTA+CGG - chr2_1:62524328-62524347 None:intergenic 30.0%
!! CAAAAAGTATCAATCCACAA+AGG - chr2_1:62524366-62524385 None:intergenic 30.0%
!! CTTTGTGGATTGATACTTTT+TGG + chr2_1:62524364-62524383 Msa0216520:three_prime_UTR 30.0%
!! GATTGATACTTTTTGGCAAA+GGG + chr2_1:62524371-62524390 Msa0216520:three_prime_UTR 30.0%
!! ATTGATACTTTTTGGCAAAG+GGG + chr2_1:62524372-62524391 Msa0216520:three_prime_UTR 30.0%
ATATTGAATAACCAAGAGCA+TGG - chr2_1:62524446-62524465 None:intergenic 30.0%
TTGGAATTGCTATCATACTA+AGG + chr2_1:62524632-62524651 Msa0216520:three_prime_UTR 30.0%
! GTTTCTGTGAGTAGTAATTT+TGG + chr2_1:62524762-62524781 Msa0216520:three_prime_UTR 30.0%
AAGCTAAACAAACTGGAAAA+TGG - chr2_1:62524822-62524841 None:intergenic 30.0%
CCAATTAAAGCTAAACAAAC+TGG - chr2_1:62524829-62524848 None:intergenic 30.0%
!! CCAGTTTGTTTAGCTTTAAT+TGG + chr2_1:62524826-62524845 Msa0216520:three_prime_UTR 30.0%
AACCTAAAGCAAAACTCTCT+TGG + chr2_1:62519019-62519038 Msa0216520:five_prime_UTR 35.0%
! ATCCAAGAGAGTTTTGCTTT+AGG - chr2_1:62519024-62519043 None:intergenic 35.0%
ACCCAACACATTCTTAGATT+TGG + chr2_1:62519084-62519103 Msa0216520:five_prime_UTR 35.0%
CACATTATGTTCTGTTGGAT+TGG + chr2_1:62519226-62519245 Msa0216520:five_prime_UTR 35.0%
GCATGATCAAGATAAGAACT+TGG - chr2_1:62519403-62519422 None:intergenic 35.0%
AAAGAACCTTGTTCTTGTTG+GGG - chr2_1:62519440-62519459 None:intergenic 35.0%
GAAAAGAACCTTGTTCTTGT+TGG - chr2_1:62519442-62519461 None:intergenic 35.0%
!! GTTAATGAAAGACTAGCTTC+TGG + chr2_1:62519558-62519577 Msa0216520:CDS 35.0%
CTACATTGAGAACACTTTCA+AGG - chr2_1:62519946-62519965 None:intergenic 35.0%
!!! CGGATCAAGGTTTTAAATTG+CGG + chr2_1:62520020-62520039 Msa0216520:intron 35.0%
! AGCAACTTTTCACAATGTCA+AGG - chr2_1:62520064-62520083 None:intergenic 35.0%
! CTACAATTGCATTGCGATTT+TGG + chr2_1:62520104-62520123 Msa0216520:intron 35.0%
ACAAACCTCTCTATAACTTC+TGG - chr2_1:62520275-62520294 None:intergenic 35.0%
AGTCAATCAAATGAAGCAGA+AGG + chr2_1:62520332-62520351 Msa0216520:CDS 35.0%
ATCAAATGAAGCAGAAGGTA+TGG + chr2_1:62520337-62520356 Msa0216520:intron 35.0%
ATGGGATCTCATAATCATAC+TGG + chr2_1:62520360-62520379 Msa0216520:intron 35.0%
TCATAATCATACTGGTGTCT+CGG + chr2_1:62520368-62520387 Msa0216520:intron 35.0%
GTAAAGCTTCCGTGTAAAAT+CGG - chr2_1:62520494-62520513 None:intergenic 35.0%
ACTATTTCCTCCAATCAAGA+TGG + chr2_1:62520657-62520676 Msa0216520:CDS 35.0%
TTCATTTCCATCTTGATTGG+AGG - chr2_1:62520667-62520686 None:intergenic 35.0%
CTCTTCATTTCCATCTTGAT+TGG - chr2_1:62520670-62520689 None:intergenic 35.0%
AAGAGAACTCGAGGTATATT+TGG + chr2_1:62520685-62520704 Msa0216520:intron 35.0%
AAAATCCAGCAACTAAAGCA+CGG - chr2_1:62520869-62520888 None:intergenic 35.0%
! TGGATTTTATCCAGAATCCA+TGG + chr2_1:62520881-62520900 Msa0216520:CDS 35.0%
ATAAGATCATCCATGGATTC+TGG - chr2_1:62520894-62520913 None:intergenic 35.0%
AAAAGAATGAAGACAAGCTG+TGG + chr2_1:62521072-62521091 Msa0216520:CDS 35.0%
TGTCCTTAAGTAAGGCAATA+CGG - chr2_1:62521135-62521154 None:intergenic 35.0%
ATTCCAGATGTCCTTAAGTA+AGG - chr2_1:62521143-62521162 None:intergenic 35.0%
GACTCGGGAAGTAAAATAAA+TGG + chr2_1:62521182-62521201 Msa0216520:CDS 35.0%
GGGAAGTAAAATAAATGGCA+CGG + chr2_1:62521187-62521206 Msa0216520:CDS 35.0%
GGAAGTAAAATAAATGGCAC+GGG + chr2_1:62521188-62521207 Msa0216520:CDS 35.0%
TTGCATATTCCCAGGATAAT+AGG - chr2_1:62521858-62521877 None:intergenic 35.0%
ATTATCCTGGGAATATGCAA+TGG + chr2_1:62521858-62521877 Msa0216520:CDS 35.0%
AAAAGGGTAGTATCACTGAA+GGG + chr2_1:62522146-62522165 Msa0216520:CDS 35.0%
TGGAAATTCCTTGAAACACA+AGG + chr2_1:62522198-62522217 Msa0216520:CDS 35.0%
TTGAACCATTTAGCATGTCA+TGG - chr2_1:62522303-62522322 None:intergenic 35.0%
ATGACATGCTAAATGGTTCA+AGG + chr2_1:62522302-62522321 Msa0216520:CDS 35.0%
GGCAAAAAGGTAATAACAAC+TGG + chr2_1:62522341-62522360 Msa0216520:CDS 35.0%
ATGAGCAAGAAGTTTGAGAA+TGG + chr2_1:62522454-62522473 Msa0216520:CDS 35.0%
CGTGTTGAATATTTCAACGA+AGG + chr2_1:62522586-62522605 Msa0216520:CDS 35.0%
TGAATATTTCAACGAAGGGA+AGG + chr2_1:62522591-62522610 Msa0216520:CDS 35.0%
TCTCAGAGAAATGATGAATC+GGG + chr2_1:62522667-62522686 Msa0216520:CDS 35.0%
!!! CCTTTCTTGTTTTTCTCTAC+AGG - chr2_1:62522730-62522749 None:intergenic 35.0%
CCTGTAGAGAAAAACAAGAA+AGG + chr2_1:62522727-62522746 Msa0216520:CDS 35.0%
AACAGCTTCTGATATCAGTT+TGG + chr2_1:62522813-62522832 Msa0216520:CDS 35.0%
TTATCCATTTCCATTCTCCA+AGG - chr2_1:62522982-62523001 None:intergenic 35.0%
! CGCTCCAGTATTTTTCTTAT+CGG - chr2_1:62523091-62523110 None:intergenic 35.0%
AAAAATACTGGAGCGAAATC+TGG + chr2_1:62523096-62523115 Msa0216520:CDS 35.0%
AAAATACTGGAGCGAAATCT+GGG + chr2_1:62523097-62523116 Msa0216520:CDS 35.0%
TCTTGACATGACATCAGATT+TGG - chr2_1:62523172-62523191 None:intergenic 35.0%
CACATATATATGGTCGAGAA+TGG - chr2_1:62523272-62523291 None:intergenic 35.0%
CCATTAGATGGATGAATCTT+AGG - chr2_1:62523519-62523538 None:intergenic 35.0%
CCTAAGATTCATCCATCTAA+TGG + chr2_1:62523516-62523535 Msa0216520:CDS 35.0%
TTCTTAGTCTCTCCATTAGA+TGG - chr2_1:62523531-62523550 None:intergenic 35.0%
TCACCTAATCAAGCAAATTC+AGG + chr2_1:62523624-62523643 Msa0216520:CDS 35.0%
!! GTTTTGTTCAACTGCTTTTG+TGG - chr2_1:62523838-62523857 None:intergenic 35.0%
GACAAGTTATCTTCACTTCA+TGG + chr2_1:62524044-62524063 Msa0216520:CDS 35.0%
ACATACTGCTGTGAATTCAA+AGG + chr2_1:62524142-62524161 Msa0216520:CDS 35.0%
TGTGAATTCAAAGGTGAATC+AGG + chr2_1:62524151-62524170 Msa0216520:CDS 35.0%
TTATCCATTTCTTCCTGTTG+TGG - chr2_1:62524268-62524287 None:intergenic 35.0%
GAAATGGATAAATGATGAGG+CGG + chr2_1:62524277-62524296 Msa0216520:CDS 35.0%
TTCCGTAAGCTTATCTTCTT+TGG + chr2_1:62524323-62524342 Msa0216520:CDS 35.0%
! AGCTTATCTTCTTTGGAAGA+AGG + chr2_1:62524330-62524349 Msa0216520:CDS 35.0%
!! GGATTGATACTTTTTGGCAA+AGG + chr2_1:62524370-62524389 Msa0216520:three_prime_UTR 35.0%
ACTTTCTACTGAGCTAAGAA+TGG - chr2_1:62524491-62524510 None:intergenic 35.0%
!! TTAGCTCAGTAGAAAGTGTT+TGG + chr2_1:62524494-62524513 Msa0216520:three_prime_UTR 35.0%
AAGAATAAGACCATGTGGAT+TGG + chr2_1:62524613-62524632 Msa0216520:three_prime_UTR 35.0%
ATCTAAGAATGTGTTGGGTG+TGG - chr2_1:62519083-62519102 None:intergenic 40.0%
! TGTGACTTGATGATTGTTGC+TGG + chr2_1:62519531-62519550 Msa0216520:CDS 40.0%
AGATTCAGGACATAGAGTGA+TGG - chr2_1:62519649-62519668 None:intergenic 40.0%
CATGGAGCATATGTAGATTC+AGG - chr2_1:62519663-62519682 None:intergenic 40.0%
CTGAATCTACATATGCTCCA+TGG + chr2_1:62519661-62519680 Msa0216520:CDS 40.0%
ATCACTCATGTGTGTGACTT+TGG + chr2_1:62519821-62519840 Msa0216520:intron 40.0%
GAGGTTTGTGACCATAGAAA+AGG + chr2_1:62520286-62520305 Msa0216520:CDS 40.0%
! CTGCACAATCTCCTTTTCTA+TGG - chr2_1:62520300-62520319 None:intergenic 40.0%
AAGGAGATTGTGCAGATTGA+AGG + chr2_1:62520305-62520324 Msa0216520:CDS 40.0%
! AATGAAGCAGAAGGTATGGA+TGG + chr2_1:62520341-62520360 Msa0216520:intron 40.0%
! ATGAAGCAGAAGGTATGGAT+GGG + chr2_1:62520342-62520361 Msa0216520:intron 40.0%
GTGTAAAATCGGACAGATGT+GGG - chr2_1:62520483-62520502 None:intergenic 40.0%
! CACATCTGTCCGATTTTACA+CGG + chr2_1:62520482-62520501 Msa0216520:intron 40.0%
ATGGAAATGAAGAGAACTCG+AGG + chr2_1:62520676-62520695 Msa0216520:CDS 40.0%
CACACATCTTTGTACTCTTC+AGG + chr2_1:62520725-62520744 Msa0216520:intron 40.0%
! GATTGTCTAGAACACGTTGA+AGG - chr2_1:62520806-62520825 None:intergenic 40.0%
GCTTTGCAAAGAACAAGCAA+TGG + chr2_1:62520836-62520855 Msa0216520:CDS 40.0%
AAATCCAGCAACTAAAGCAC+GGG - chr2_1:62520868-62520887 None:intergenic 40.0%
! ATTTGTTTCGCTGACGCTTT+TGG + chr2_1:62520912-62520931 Msa0216520:CDS 40.0%
!!! CTTTTGGAGCTTCACGTTTA+AGG + chr2_1:62520928-62520947 Msa0216520:CDS 40.0%
TTAAGGTCTGCGAGCAATAT+TGG + chr2_1:62520945-62520964 Msa0216520:intron 40.0%
AACCCGTATTGCCTTACTTA+AGG + chr2_1:62521129-62521148 Msa0216520:CDS 40.0%
GTCCTTAAGTAAGGCAATAC+GGG - chr2_1:62521134-62521153 None:intergenic 40.0%
TTGCCTTACTTAAGGACATC+TGG + chr2_1:62521137-62521156 Msa0216520:CDS 40.0%
! ACATCTGGAATCATACTTGC+AGG + chr2_1:62521152-62521171 Msa0216520:CDS 40.0%
TGGAGTTGAATCAGAAACTG+AGG - chr2_1:62521219-62521238 None:intergenic 40.0%
! ATCCACTTGGTAGTTTACCT+TGG - chr2_1:62521265-62521284 None:intergenic 40.0%
! ACCAAGTGGATTCAGTATGT+TGG + chr2_1:62521274-62521293 Msa0216520:intron 40.0%
ACCAACATACTGAATCCACT+TGG - chr2_1:62521278-62521297 None:intergenic 40.0%
ACCAATTGTGCATACGTCTT+CGG + chr2_1:62521420-62521439 Msa0216520:intron 40.0%
GTTCAAACACCATCATCTGA+TGG + chr2_1:62521704-62521723 Msa0216520:CDS 40.0%
AAACACCATCATCTGATGGA+AGG + chr2_1:62521708-62521727 Msa0216520:CDS 40.0%
AACACCATCATCTGATGGAA+GGG + chr2_1:62521709-62521728 Msa0216520:CDS 40.0%
! ATGTACTGTGGATGATGGTT+CGG - chr2_1:62521755-62521774 None:intergenic 40.0%
TGTGAATGTACTGTGGATGA+TGG - chr2_1:62521760-62521779 None:intergenic 40.0%
TACATGTATCCTTGGTATGG+AGG - chr2_1:62521812-62521831 None:intergenic 40.0%
GGATACATGTATCCTTGGTA+TGG - chr2_1:62521815-62521834 None:intergenic 40.0%
TACCAAGGATACATGTATCC+TGG + chr2_1:62521815-62521834 Msa0216520:CDS 40.0%
TACCAGGATACATGTATCCT+TGG - chr2_1:62521820-62521839 None:intergenic 40.0%
ATACATGTATCCTGGTATGC+AGG + chr2_1:62521823-62521842 Msa0216520:CDS 40.0%
TTCCGTCTTCCTATTATCCT+GGG + chr2_1:62521846-62521865 Msa0216520:CDS 40.0%
TTCCCAGGATAATAGGAAGA+CGG - chr2_1:62521851-62521870 None:intergenic 40.0%
AATATGCAATGGCCTCCAAA+CGG + chr2_1:62521869-62521888 Msa0216520:CDS 40.0%
GAAAAGGGTAGTATCACTGA+AGG + chr2_1:62522145-62522164 Msa0216520:CDS 40.0%
TTCCTTGAAACACAAGGTAG+AGG + chr2_1:62522204-62522223 Msa0216520:CDS 40.0%
TTCCTCTACCTTGTGTTTCA+AGG - chr2_1:62522209-62522228 None:intergenic 40.0%
! TTGTTTCTTATGCTGACGAG+AGG - chr2_1:62522266-62522285 None:intergenic 40.0%
AAGCACCATGACATGCTAAA+TGG + chr2_1:62522295-62522314 Msa0216520:CDS 40.0%
!! TCAAGGAATGCTGATTCCAA+CGG + chr2_1:62522319-62522338 Msa0216520:CDS 40.0%
! GTTATTACCTTTTTGCCCGT+TGG - chr2_1:62522338-62522357 None:intergenic 40.0%
CGTCTCTCAAAAGAAGATTC+TGG - chr2_1:62522375-62522394 None:intergenic 40.0%
GCAAGAAGTTTGAGAATGGA+AGG + chr2_1:62522458-62522477 Msa0216520:CDS 40.0%
ATTCCTTTATTGTGGCAGAG+AGG + chr2_1:62522539-62522558 Msa0216520:CDS 40.0%
TTCCTTTATTGTGGCAGAGA+GGG + chr2_1:62522540-62522559 Msa0216520:CDS 40.0%
TATTTCAACGAAGGGAAGGA+TGG + chr2_1:62522595-62522614 Msa0216520:CDS 40.0%
GACAAAGAAAATTACCAGCG+AGG + chr2_1:62522633-62522652 Msa0216520:CDS 40.0%
AGATAACAACAATTCCTCGC+TGG - chr2_1:62522650-62522669 None:intergenic 40.0%
! AGTTTGGTTTCAGACGTTGT+CGG + chr2_1:62522829-62522848 Msa0216520:CDS 40.0%
TTCACAAACGGTACACAAGA+AGG + chr2_1:62522862-62522881 Msa0216520:CDS 40.0%
GTCAAGAAGTAGAACATTGC+CGG + chr2_1:62523185-62523204 Msa0216520:CDS 40.0%
TCAAGAAGTAGAACATTGCC+GGG + chr2_1:62523186-62523205 Msa0216520:CDS 40.0%
TACAGCTACGAAGAGCAAAT+CGG + chr2_1:62523218-62523237 Msa0216520:CDS 40.0%
TACGAAGAGCAAATCGGAAA+AGG + chr2_1:62523224-62523243 Msa0216520:CDS 40.0%
GAGAAGAGTTAATGTTGCAG+CGG + chr2_1:62523409-62523428 Msa0216520:CDS 40.0%
! CTTCTTCAAGGCACTTCTTT+CGG - chr2_1:62523448-62523467 None:intergenic 40.0%
TTCTGTTCCAGTCTTCTTCA+AGG - chr2_1:62523460-62523479 None:intergenic 40.0%
! AGACTTCTTTGACTTCAGCA+AGG + chr2_1:62523484-62523503 Msa0216520:CDS 40.0%
! TCTTTGACTTCAGCAAGGAA+AGG + chr2_1:62523489-62523508 Msa0216520:CDS 40.0%
! CTTTGACTTCAGCAAGGAAA+GGG + chr2_1:62523490-62523509 Msa0216520:CDS 40.0%
AACTGAACAAACCAGTCCTT+AGG + chr2_1:62523550-62523569 Msa0216520:CDS 40.0%
AAACCTTCTGCTGAGTTACT+CGG - chr2_1:62523605-62523624 None:intergenic 40.0%
! GGACCTGAATTTGCTTGATT+AGG - chr2_1:62523630-62523649 None:intergenic 40.0%
! ACCTTATTTGCCTTCAAGGA+AGG - chr2_1:62523663-62523682 None:intergenic 40.0%
! AGGTACCTTATTTGCCTTCA+AGG - chr2_1:62523667-62523686 None:intergenic 40.0%
!! TGGAGCTGTTTCTTCAGTAA+AGG - chr2_1:62523687-62523706 None:intergenic 40.0%
AAATATCAGCCAACTTCGCA+CGG + chr2_1:62523956-62523975 Msa0216520:CDS 40.0%
TCTTGCATTGCTTGGTTACT+CGG - chr2_1:62524239-62524258 None:intergenic 40.0%
! GGATTGATTCTTGCATTGCT+TGG - chr2_1:62524247-62524266 None:intergenic 40.0%
TGCAAGAATCAATCCACAAC+AGG + chr2_1:62524252-62524271 Msa0216520:CDS 40.0%
CAATCCACAACAGGAAGAAA+TGG + chr2_1:62524261-62524280 Msa0216520:CDS 40.0%
GACTCTTCAAAAGTAGCGAA+AGG + chr2_1:62524299-62524318 Msa0216520:CDS 40.0%
GTTCTCTTTATCCATGCTCT+TGG + chr2_1:62524432-62524451 Msa0216520:three_prime_UTR 40.0%
ACACACTCATTCATGTGACA+TGG + chr2_1:62524543-62524562 Msa0216520:three_prime_UTR 40.0%
CATGTGACATGGTAATCATG+TGG + chr2_1:62524554-62524573 Msa0216520:three_prime_UTR 40.0%
GATAGCAATTCCAATCCACA+TGG - chr2_1:62524626-62524645 None:intergenic 40.0%
AGAATGTGTTGGGTGTGGTT+AGG - chr2_1:62519078-62519097 None:intergenic 45.0%
AACTCACCCCAACAAGAACA+AGG + chr2_1:62519431-62519450 Msa0216520:CDS 45.0%
! GACTTGATGATTGTTGCTGG+TGG + chr2_1:62519534-62519553 Msa0216520:CDS 45.0%
AAACCTTTGCAAGGTGGCTT+TGG - chr2_1:62519691-62519710 None:intergenic 45.0%
!! TCCTCTTTTAGTTACCAGGG+CGG + chr2_1:62520000-62520019 Msa0216520:intron 45.0%
! TTTAAAACCTTGATCCGCCC+TGG - chr2_1:62520017-62520036 None:intergenic 45.0%
GCACTCCAGAAGTTATAGAG+AGG + chr2_1:62520267-62520286 Msa0216520:CDS 45.0%
ATTCCTTCACGTTTACCACG+AGG - chr2_1:62520430-62520449 None:intergenic 45.0%
CGTGTAAAATCGGACAGATG+TGG - chr2_1:62520484-62520503 None:intergenic 45.0%
AGGAAATGTGTCATATGCCG+AGG + chr2_1:62520617-62520636 Msa0216520:intron 45.0%
GGAAATGTGTCATATGCCGA+GGG + chr2_1:62520618-62520637 Msa0216520:intron 45.0%
GAAATGTGTCATATGCCGAG+GGG + chr2_1:62520619-62520638 Msa0216520:CDS 45.0%
GAATGAAGACAAGCTGTGGA+TGG + chr2_1:62521076-62521095 Msa0216520:CDS 45.0%
ACTTGCAGGTGAAGATGACT+CGG + chr2_1:62521166-62521185 Msa0216520:CDS 45.0%
ATGTCGAAACTTGCATGGCT+TGG - chr2_1:62521239-62521258 None:intergenic 45.0%
AGCCATGCAAGTTTCGACAT+TGG + chr2_1:62521239-62521258 Msa0216520:CDS 45.0%
!! AGTGCAAAAGCATCATGGGA+AGG - chr2_1:62521398-62521417 None:intergenic 45.0%
!! GTCGAGTGCAAAAGCATCAT+GGG - chr2_1:62521402-62521421 None:intergenic 45.0%
GATGGTGTTTGAACTGATGC+TGG - chr2_1:62521698-62521717 None:intergenic 45.0%
ACACCATCATCTGATGGAAG+GGG + chr2_1:62521710-62521729 Msa0216520:CDS 45.0%
GTTCCGTCTTCCTATTATCC+TGG + chr2_1:62521845-62521864 Msa0216520:CDS 45.0%
ATATGCAATGGCCTCCAAAC+GGG + chr2_1:62521870-62521889 Msa0216520:CDS 45.0%
AGCATGGAAAGAAGTCGTCA+AGG + chr2_1:62522074-62522093 Msa0216520:CDS 45.0%
ATCCAATGGAGACGGAGAAA+AGG + chr2_1:62522129-62522148 Msa0216520:CDS 45.0%
TCCAATGGAGACGGAGAAAA+GGG + chr2_1:62522130-62522149 Msa0216520:CDS 45.0%
TGAAGGGAGTTTGTCGAATG+AGG + chr2_1:62522162-62522181 Msa0216520:CDS 45.0%
!! CAAGGAATGCTGATTCCAAC+GGG + chr2_1:62522320-62522339 Msa0216520:CDS 45.0%
! TTTTAGTGACGTCTGCTTCG+TGG - chr2_1:62522501-62522520 None:intergenic 45.0%
TTCCCTCTCTGCCACAATAA+AGG - chr2_1:62522545-62522564 None:intergenic 45.0%
TATTGTGGCAGAGAGGGAAT+TGG + chr2_1:62522546-62522565 Msa0216520:CDS 45.0%
AGAGAGGGAATTGGACAGTA+AGG + chr2_1:62522555-62522574 Msa0216520:CDS 45.0%
GAGAGGGAATTGGACAGTAA+GGG + chr2_1:62522556-62522575 Msa0216520:CDS 45.0%
CATGATTCAAGCTCGACCAT+TGG + chr2_1:62522771-62522790 Msa0216520:CDS 45.0%
! ATCTGGCTCGTGGGAAATTA+AGG - chr2_1:62522908-62522927 None:intergenic 45.0%
AGAACCATGAGGAGATCATC+TGG - chr2_1:62522925-62522944 None:intergenic 45.0%
AATCACGATCGAGAACCATG+AGG - chr2_1:62522936-62522955 None:intergenic 45.0%
AGCACCTTGGAGAATGGAAA+TGG + chr2_1:62522975-62522994 Msa0216520:CDS 45.0%
!! GGCGCCGATAAGAAAAATAC+TGG + chr2_1:62523084-62523103 Msa0216520:CDS 45.0%
!! AGAAGTGCCTTGAAGAAGAC+TGG + chr2_1:62523450-62523469 Msa0216520:CDS 45.0%
AACCTTCTGCTGAGTTACTC+GGG - chr2_1:62523604-62523623 None:intergenic 45.0%
TTCAAGGAAGGCTTCTTGGT+TGG - chr2_1:62523651-62523670 None:intergenic 45.0%
AACCAAGAAGCCTTCCTTGA+AGG + chr2_1:62523650-62523669 Msa0216520:CDS 45.0%
GCCTTCCTTGAAGGCAAATA+AGG + chr2_1:62523659-62523678 Msa0216520:CDS 45.0%
! CTTAGTCTTTGCGCTACTCT+TGG - chr2_1:62523772-62523791 None:intergenic 45.0%
TTTGTGGCATCAGGTTTGAC+AGG - chr2_1:62523822-62523841 None:intergenic 45.0%
!! TCAACTGCTTTTGTGGCATC+AGG - chr2_1:62523831-62523850 None:intergenic 45.0%
AAGGAGCTGAAGAACCTTTG+TGG + chr2_1:62524349-62524368 Msa0216520:exon 45.0%
ATGTGTTGGGTGTGGTTAGG+AGG - chr2_1:62519075-62519094 None:intergenic 50.0%
!! AAGGTGGCTTTGGTGAACCA+TGG - chr2_1:62519681-62519700 None:intergenic 50.0%
TCACCAAAGCCACCTTGCAA+AGG + chr2_1:62519685-62519704 Msa0216520:CDS 50.0%
TCCGCCCTGGTAACTAAAAG+AGG - chr2_1:62520004-62520023 None:intergenic 50.0%
TTAGTTACCAGGGCGGATCA+AGG + chr2_1:62520007-62520026 Msa0216520:intron 50.0%
CTTCCTCGTGGTAAACGTGA+AGG + chr2_1:62520424-62520443 Msa0216520:intron 50.0%
CATGCTTCCCTACACATGAC+AGG - chr2_1:62521026-62521045 None:intergenic 50.0%
CTTGCAGGTGAAGATGACTC+GGG + chr2_1:62521167-62521186 Msa0216520:CDS 50.0%
GGCCAATGTCGAAACTTGCA+TGG - chr2_1:62521244-62521263 None:intergenic 50.0%
GCAAGTTTCGACATTGGCCA+AGG + chr2_1:62521245-62521264 Msa0216520:CDS 50.0%
GGCCAAGGTAAACTACCAAG+TGG + chr2_1:62521260-62521279 Msa0216520:intron 50.0%
!! GGTCGAGTGCAAAAGCATCA+TGG - chr2_1:62521403-62521422 None:intergenic 50.0%
GCCGAAGACGTATGCACAAT+TGG - chr2_1:62521424-62521443 None:intergenic 50.0%
CAACAAACGCCTCCATACCA+AGG + chr2_1:62521800-62521819 Msa0216520:CDS 50.0%
TATGCAATGGCCTCCAAACG+GGG + chr2_1:62521871-62521890 Msa0216520:CDS 50.0%
ATTTCAGAGCGATCCCCGTT+TGG - chr2_1:62521887-62521906 None:intergenic 50.0%
!! AAACGGGGATCGCTCTGAAA+TGG + chr2_1:62521886-62521905 Msa0216520:CDS 50.0%
CGTCTTCGCAACAAGAAGCA+TGG + chr2_1:62522058-62522077 Msa0216520:CDS 50.0%
! ACCCTTTTCTCCGTCTCCAT+TGG - chr2_1:62522134-62522153 None:intergenic 50.0%
! GCTGATTCCAACGGGCAAAA+AGG + chr2_1:62522328-62522347 Msa0216520:CDS 50.0%
GGTGCGGCTGAATTCACAAA+CGG + chr2_1:62522850-62522869 Msa0216520:CDS 50.0%
TACAGCAGAATGCAGCACCT+TGG + chr2_1:62522962-62522981 Msa0216520:CDS 50.0%
GAATGCAGCACCTTGGAGAA+TGG + chr2_1:62522969-62522988 Msa0216520:CDS 50.0%
! ATGGTGGAACTCCTAAGGAC+TGG - chr2_1:62523564-62523583 None:intergenic 50.0%
!! GATCGATGGTGGAACTCCTA+AGG - chr2_1:62523569-62523588 None:intergenic 50.0%
TGCCTTCAAGGAAGGCTTCT+TGG - chr2_1:62523655-62523674 None:intergenic 50.0%
!! AGACATTGGAGTGCTGACCA+AGG + chr2_1:62523878-62523897 Msa0216520:CDS 50.0%
ATGTTTCTCCGGTGATGCCT+TGG - chr2_1:62523898-62523917 None:intergenic 50.0%
TGCATTGCTTGGTTACTCGG+CGG - chr2_1:62524236-62524255 None:intergenic 50.0%
! TGACCTTTTGACACGCCCCT+CGG - chr2_1:62520637-62520656 None:intergenic 55.0%
AGCAACTAAAGCACGGGCGT+AGG - chr2_1:62520862-62520881 None:intergenic 55.0%
TACGCCCGTGCTTTAGTTGC+TGG + chr2_1:62520861-62520880 Msa0216520:CDS 55.0%
GGATGAGATTGCAGCCATGC+AGG + chr2_1:62521097-62521116 Msa0216520:CDS 55.0%
ATACGTCTTCGGCTGCACAG+CGG + chr2_1:62521431-62521450 Msa0216520:intron 55.0%
TGGCCCCTTCCATCAGATGA+TGG - chr2_1:62521716-62521735 None:intergenic 55.0%
! TGATGGTTCGGCCATGACCT+CGG - chr2_1:62521743-62521762 None:intergenic 55.0%
GAAGACGGAACCTGCATACC+AGG - chr2_1:62521836-62521855 None:intergenic 55.0%
GGAGGCCATTGCATATTCCC+AGG - chr2_1:62521866-62521885 None:intergenic 55.0%
AGAGGAAGCTGTTGCGTCAC+TGG + chr2_1:62522222-62522241 Msa0216520:CDS 55.0%
TAGTGACGTCTGCTTCGTGG+TGG - chr2_1:62522498-62522517 None:intergenic 55.0%
GGTTTCAGACGTTGTCGGTG+CGG + chr2_1:62522834-62522853 Msa0216520:CDS 55.0%
! GAGGAGATCATCTGGCTCGT+GGG - chr2_1:62522917-62522936 None:intergenic 55.0%
! TGAGGAGATCATCTGGCTCG+TGG - chr2_1:62522918-62522937 None:intergenic 55.0%
CGAGCCAGATGATCTCCTCA+TGG + chr2_1:62522918-62522937 Msa0216520:CDS 55.0%
GTAGAACATTGCCGGGAAGC+AGG + chr2_1:62523193-62523212 Msa0216520:CDS 55.0%
GTAGCTGTAGACCTGCTTCC+CGG - chr2_1:62523207-62523226 None:intergenic 55.0%
AGTTGCAAGGCGATCGATGG+TGG - chr2_1:62523580-62523599 None:intergenic 55.0%
GAGTTACTCGGGCAGTTGCA+AGG - chr2_1:62523593-62523612 None:intergenic 55.0%
TGCCCGAGTAACTCAGCAGA+AGG + chr2_1:62523599-62523618 Msa0216520:CDS 55.0%
!! AGTGCTGACCAAGGCATCAC+CGG + chr2_1:62523887-62523906 Msa0216520:CDS 55.0%
AAGACGAGTCCGTGCGAAGT+TGG - chr2_1:62523968-62523987 None:intergenic 55.0%
ATTGCTTGGTTACTCGGCGG+AGG - chr2_1:62524233-62524252 None:intergenic 55.0%
! ATGCCGAGGGGCGTGTCAAA+AGG + chr2_1:62520631-62520650 Msa0216520:CDS 60.0%
GGGTTGCGAAGACACCTGCA+TGG - chr2_1:62521114-62521133 None:intergenic 60.0%
ATGGAAGGGGCCAAATGCCG+AGG + chr2_1:62521723-62521742 Msa0216520:CDS 60.0%
TCGGCCATGACCTCGGCATT+TGG - chr2_1:62521736-62521755 None:intergenic 60.0%
TCAGAGCGATCCCCGTTTGG+AGG - chr2_1:62521884-62521903 None:intergenic 60.0%
GGCAGTTGCAAGGCGATCGA+TGG - chr2_1:62523583-62523602 None:intergenic 60.0%
GGGGCCAAATGCCGAGGTCA+TGG + chr2_1:62521729-62521748 Msa0216520:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 62519015 62524853 62519015 ID=Msa0216520;Name=Msa0216520
chr2_1 mRNA 62519015 62524853 62519015 ID=Msa0216520-mRNA-1;Parent=Msa0216520;Name=Msa0216520-mRNA-1;_AED=0.12;_eAED=0.12;_QI=379|1|1|1|1|1|8|495|1111
chr2_1 exon 62519015 62519452 62519015 ID=Msa0216520-mRNA-1:exon:17288;Parent=Msa0216520-mRNA-1
chr2_1 exon 62519530 62519706 62519530 ID=Msa0216520-mRNA-1:exon:17289;Parent=Msa0216520-mRNA-1
chr2_1 exon 62520250 62520353 62520250 ID=Msa0216520-mRNA-1:exon:17290;Parent=Msa0216520-mRNA-1
chr2_1 exon 62520619 62520697 62520619 ID=Msa0216520-mRNA-1:exon:17291;Parent=Msa0216520-mRNA-1
chr2_1 exon 62520797 62520949 62520797 ID=Msa0216520-mRNA-1:exon:17292;Parent=Msa0216520-mRNA-1
chr2_1 exon 62521037 62521266 62521037 ID=Msa0216520-mRNA-1:exon:17293;Parent=Msa0216520-mRNA-1
chr2_1 exon 62521684 62523245 62521684 ID=Msa0216520-mRNA-1:exon:17294;Parent=Msa0216520-mRNA-1
chr2_1 exon 62523387 62524853 62523387 ID=Msa0216520-mRNA-1:exon:17295;Parent=Msa0216520-mRNA-1
chr2_1 five_prime_UTR 62519015 62519393 62519015 ID=Msa0216520-mRNA-1:five_prime_utr;Parent=Msa0216520-mRNA-1
chr2_1 CDS 62519394 62519452 62519394 ID=Msa0216520-mRNA-1:cds;Parent=Msa0216520-mRNA-1
chr2_1 CDS 62519530 62519706 62519530 ID=Msa0216520-mRNA-1:cds;Parent=Msa0216520-mRNA-1
chr2_1 CDS 62520250 62520353 62520250 ID=Msa0216520-mRNA-1:cds;Parent=Msa0216520-mRNA-1
chr2_1 CDS 62520619 62520697 62520619 ID=Msa0216520-mRNA-1:cds;Parent=Msa0216520-mRNA-1
chr2_1 CDS 62520797 62520949 62520797 ID=Msa0216520-mRNA-1:cds;Parent=Msa0216520-mRNA-1
chr2_1 CDS 62521037 62521266 62521037 ID=Msa0216520-mRNA-1:cds;Parent=Msa0216520-mRNA-1
chr2_1 CDS 62521684 62523245 62521684 ID=Msa0216520-mRNA-1:cds;Parent=Msa0216520-mRNA-1
chr2_1 CDS 62523387 62524358 62523387 ID=Msa0216520-mRNA-1:cds;Parent=Msa0216520-mRNA-1
chr2_1 three_prime_UTR 62524359 62524853 62524359 ID=Msa0216520-mRNA-1:three_prime_utr;Parent=Msa0216520-mRNA-1
Gene Sequence

>Msa0216520

ATGGATCCAAGTTCTTATCTTGATCATGCTCTTTTTCAACTCACCCCAACAAGAACAAGATGTGACTTGATGATTGTTGCTGGTGGTGTTAATGAAAGACTAGCTTCTGGGCTGTTAGAACCGTTTGTTTCTCACCTTAAATGTGCAAAAGATCAGATTTCAAAAGGTGGCTATTCCATCACTCTATGTCCTGAATCTACATATGCTCCATGGTTCACCAAAGCCACCTTGCAAAGGTTTGTTAGATTTGTGAGCACTCCAGAAGTTATAGAGAGGTTTGTGACCATAGAAAAGGAGATTGTGCAGATTGAAGGTTCAAGTCAATCAAATGAAGCAGAAGGAAATGTGTCATATGCCGAGGGGCGTGTCAAAAGGTCAACTATTTCCTCCAATCAAGATGGAAATGAAGAGAACTCGAGGGTTCGCCTTCAACGTGTTCTAGACAATCGTAAAGCTATGCTTTGCAAAGAACAAGCAATGGCCTACGCCCGTGCTTTAGTTGCTGGATTTTATCCAGAATCCATGGATGATCTTATTTGTTTCGCTGACGCTTTTGGAGCTTCACGTTTAAGGGAAGCATGCTTAAATTTCTTAGAGCTATGCAAACAAAAGAATGAAGACAAGCTGTGGATGGATGAGATTGCAGCCATGCAGGTGTCTTCGCAACCCGTATTGCCTTACTTAAGGACATCTGGAATCATACTTGCAGGTGAAGATGACTCGGGAAGTAAAATAAATGGCACGGGTGATGCCTCAGTTTCTGATTCAACTCCAAGCCATGCAAGTTTCGACATTGGCCAAGATTATAGCTTGCCAGCATCAGTTCAAACACCATCATCTGATGGAAGGGGCCAAATGCCGAGGTCATGGCCGAACCATCATCCACAGTACATTCACAATTTTCAGGGTCATGCATTTCAACAAACGCCTCCATACCAAGGATACATGTATCCTGGTATGCAGGTTCCGTCTTCCTATTATCCTGGGAATATGCAATGGCCTCCAAACGGGGATCGCTCTGAAATGGATTCTCATAAGAAAAAGAAGAAGAAAAACAAGAAATCTCAGGTATTGGATCACTCTGAAGAAGATGAGTCAACTGCATCGTCTGATTCTACTTATGAGAGTGATTCAGATGACAATTCAAAGCAAAGCAAAAAGAACTCTTCAACGGAGCGTCTTCGCAACAAGAAGCATGGAAAGAAGTCGTCAAGGAAAGTAGTTATCCGTAATATAAACTATATAACATCCAATGGAGACGGAGAAAAGGGTAGTATCACTGAAGGGAGTTTGTCGAATGAGGAAGAATTTATCAATGGAAATTCCTTGAAACACAAGGTAGAGGAAGCTGTTGCGTCACTGGAGAAAAGAAACAAGTCAACCTCTCGTCAGCATAAGAAACAACATAGCGAAAAGCACCATGACATGCTAAATGGTTCAAGGAATGCTGATTCCAACGGGCAAAAAGGTAATAACAACTGGGATGCTTTCCAGAATCTTCTTTTGAGAGACGATGATGATTCTACTCATGATATAGGAAAACAGCCAATGAAATTTCAGGAAGAATATGCTATGAGCAAGAAGTTTGAGAATGGAAGGTCAAATGAGTTTAACCACCACGAAGCAGACGTCACTAAAACTCGAGTAGTTTCAAATGATTCCTTTATTGTGGCAGAGAGGGAATTGGACAGTAAGGGTCGAGATCGTGTTGAATATTTCAACGAAGGGAAGGATGGATCTACATTCATGCAGACAAAGAAAATTACCAGCGAGGAATTGTTGTTATCTCAGAGAAATGATGAATCGGGTAGCTATTATGTGTCATCTTCAGCTAGAGATTATTTACCTGTAGAGAAAAACAAGAAAGGCATTTTAGCTGACGACTCTTTCATGATTCAAGCTCGACCATTGGAACATCAATTTAATTCTCAAACAGCTTCTGATATCAGTTTGGTTTCAGACGTTGTCGGTGCGGCTGAATTCACAAACGGTACACAAGAAGGTTCACACAAGAAGACTGATGCCTTAATTTCCCACGAGCCAGATGATCTCCTCATGGTTCTCGATCGTGATTCAGCTGTACAGCAGAATGCAGCACCTTGGAGAATGGAAATGGATAATGAAAACAACATCTCTCTATACGAAGCTAACAAAAAGATTTCGGACGCTAAAACCGAAAGAAATCTTGTATCTAATCATGAAGGCGCCGATAAGAAAAATACTGGAGCGAAATCTGGGAAAATTTCAAGTAAAGAGGCAAAATCGAAGACTCCAAATGCATCTAAAACCAAATCTGATGTCATGTCAAGAAGTAGAACATTGCCGGGAAGCAGGTCTACAGCTACGAAGAGCAAATCGGAAAAGGAAGAAGAAAATAGAAAGAGAAGAGAAGAGTTAATGTTGCAGCGGCAGAAAAGAATTGCCGAAAGAAGTGCCTTGAAGAAGACTGGAACAGAAACTAAGACTTCTTTGACTTCAGCAAGGAAAGGGAATCCTAAGATTCATCCATCTAATGGAGAGACTAAGAAACTGAACAAACCAGTCCTTAGGAGTTCCACCATCGATCGCCTTGCAACTGCCCGAGTAACTCAGCAGAAGGTTTCACCTAATCAAGCAAATTCAGGTCCAACCAAGAAGCCTTCCTTGAAGGCAAATAAGGTACCTTTACTGAAGAAACAGCTCCAAAAAGAAGTGAAATCTTCAAATCATAAAGAAGATGTGCATAAAACAAAAGGGAAAGTTCTTTCCAAGAGTAGCGCAAAGACTAAGAATGAAATCAAGGCTTCGGTAGTATTGCCTGTCAAACCTGATGCCACAAAAGCAGTTGAACAAAACAACAACAATCATGGTTTGAAAGACATTGGAGTGCTGACCAAGGCATCACCGGAGAAACATTCAAGATATTTGACTTCAGACAGAGAAATCTTACATGAAAATATCAGCCAACTTCGCACGGACTCGTCTTTGTCAAGTCATGATCATGCATTGAGAGGAAATCAGTCTAGAAATGAAGTAGTATCAGACAAGTTATCTTCACTTCATGGCGATAATAATCAACCTCGACATAATAATGACATGATCACAACTTCTACAGCTGCATTACCTAACAAACCATTAATACATACTGCTGTGAATTCAAAGGTGAATCAGGAAATAGAAGAAAGTAATGCTACTACACCTAAAGTCTCAGAGATTCAAATCTCTACTCCTCCGCCGAGTAACCAAGCAATGCAAGAATCAATCCACAACAGGAAGAAATGGATAAATGATGAGGCGGACTCTTCAAAAGTAGCGAAAGGATTCCGTAAGCTTATCTTCTTTGGAAGAAGGAGCTGA
Protein sequence

>Msa0216520

MDPSSYLDHALFQLTPTRTRCDLMIVAGGVNERLASGLLEPFVSHLKCAKDQISKGGYSITLCPESTYAPWFTKATLQRFVRFVSTPEVIERFVTIEKEIVQIEGSSQSNEAEGNVSYAEGRVKRSTISSNQDGNEENSRVRLQRVLDNRKAMLCKEQAMAYARALVAGFYPESMDDLICFADAFGASRLREACLNFLELCKQKNEDKLWMDEIAAMQVSSQPVLPYLRTSGIILAGEDDSGSKINGTGDASVSDSTPSHASFDIGQDYSLPASVQTPSSDGRGQMPRSWPNHHPQYIHNFQGHAFQQTPPYQGYMYPGMQVPSSYYPGNMQWPPNGDRSEMDSHKKKKKKNKKSQVLDHSEEDESTASSDSTYESDSDDNSKQSKKNSSTERLRNKKHGKKSSRKVVIRNINYITSNGDGEKGSITEGSLSNEEEFINGNSLKHKVEEAVASLEKRNKSTSRQHKKQHSEKHHDMLNGSRNADSNGQKGNNNWDAFQNLLLRDDDDSTHDIGKQPMKFQEEYAMSKKFENGRSNEFNHHEADVTKTRVVSNDSFIVAERELDSKGRDRVEYFNEGKDGSTFMQTKKITSEELLLSQRNDESGSYYVSSSARDYLPVEKNKKGILADDSFMIQARPLEHQFNSQTASDISLVSDVVGAAEFTNGTQEGSHKKTDALISHEPDDLLMVLDRDSAVQQNAAPWRMEMDNENNISLYEANKKISDAKTERNLVSNHEGADKKNTGAKSGKISSKEAKSKTPNASKTKSDVMSRSRTLPGSRSTATKSKSEKEEENRKRREELMLQRQKRIAERSALKKTGTETKTSLTSARKGNPKIHPSNGETKKLNKPVLRSSTIDRLATARVTQQKVSPNQANSGPTKKPSLKANKVPLLKKQLQKEVKSSNHKEDVHKTKGKVLSKSSAKTKNEIKASVVLPVKPDATKAVEQNNNNHGLKDIGVLTKASPEKHSRYLTSDREILHENISQLRTDSSLSSHDHALRGNQSRNEVVSDKLSSLHGDNNQPRHNNDMITTSTAALPNKPLIHTAVNSKVNQEIEESNATTPKVSEIQISTPPPSNQAMQESIHNRKKWINDEADSSKVAKGFRKLIFFGRRS*