AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0217810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217810 MtrunA17_Chr2g0319751 80.645 434 82 1 1 432 1 434 0.0 723
Msa0217810 MtrunA17_Chr2g0319751 76.856 458 80 1 1 432 478 935 0.0 713
Msa0217810 MtrunA17_Chr2g0319791 72.926 458 98 1 1 432 1 458 0.0 681
Msa0217810 MtrunA17_Chr2g0319761 69.869 458 112 1 1 432 1 458 0.0 639
Msa0217810 MtrunA17_Chr2g0319731 60.044 458 157 2 1 432 18 475 0.0 556
Msa0217810 MtrunA17_Chr2g0319801 59.389 458 160 1 1 432 1 458 0.0 556
Msa0217810 MtrunA17_Chr4g0040691 54.348 460 180 4 1 432 1 458 7.93e-176 499
Msa0217810 MtrunA17_Chr4g0040711 53.913 460 182 4 1 432 1 458 5.54e-174 494
Msa0217810 MtrunA17_Chr2g0283041 50.442 452 197 2 7 432 6 456 4.25e-157 452
Msa0217810 MtrunA17_Chr2g0319721 90.503 179 17 0 11 189 1 179 5.65e-115 334
Msa0217810 MtrunA17_Chr1g0196851 37.391 460 244 11 7 431 48 498 1.51e-91 285
Msa0217810 MtrunA17_Chr2g0321331 52.632 285 107 4 154 431 3 266 2.08e-89 272
Msa0217810 MtrunA17_Chr4g0029131 35.435 460 250 11 7 431 11 458 2.45e-87 279
Msa0217810 MtrunA17_Chr4g0029131 34.783 184 109 7 7 185 469 646 6.35e-24 104
Msa0217810 MtrunA17_Chr4g0029151 34.848 462 252 12 7 432 19 467 2.31e-83 263
Msa0217810 MtrunA17_Chr4g0029161 32.174 460 237 12 7 431 11 430 3.76e-69 225
Msa0217810 MtrunA17_Chr2g0319711 90.426 94 9 0 339 432 2 95 1.66e-57 184
Msa0217810 MtrunA17_Chr7g0241801 29.736 454 255 14 2 425 3 422 3.49e-52 181
Msa0217810 MtrunA17_Chr2g0321321 61.481 135 51 1 11 145 1 134 4.91e-50 166
Msa0217810 MtrunA17_Chr8g0367221 29.114 474 284 16 1 432 1281 1744 1.14e-48 178
Msa0217810 MtrunA17_Chr8g0367221 29.747 474 257 17 2 421 792 1243 5.32e-46 171
Msa0217810 MtrunA17_Chr8g0367221 28.970 466 286 14 2 429 6 464 2.24e-45 169
Msa0217810 MtrunA17_Chr7g0241781 29.231 455 256 15 2 425 3 422 3.34e-48 170
Msa0217810 MtrunA17_Chr4g0069611 27.214 463 281 16 6 429 13 458 7.01e-46 165
Msa0217810 MtrunA17_Chr2g0278741 28.172 465 285 16 2 428 91 544 1.05e-45 166
Msa0217810 MtrunA17_Chr2g0278721 28.294 463 287 14 2 428 9 462 3.82e-45 167
Msa0217810 MtrunA17_Chr2g0278721 29.574 470 277 19 6 430 515 975 4.94e-45 167
Msa0217810 MtrunA17_Chr6g0464091 28.298 470 284 17 1 429 11 468 4.61e-45 162
Msa0217810 MtrunA17_Chr6g0466831 29.284 461 272 18 7 429 17 461 6.59e-45 162
Msa0217810 MtrunA17_Chr6g0466841 29.284 461 272 18 7 429 17 461 1.15e-44 161
Msa0217810 MtrunA17_Chr2g0319771 80.000 90 18 0 331 420 11 100 2.71e-42 145
Msa0217810 MtrunA17_Chr2g0302851 26.856 458 287 16 6 428 14 458 1.02e-39 148
Msa0217810 MtrunA17_Chr8g0336251 28.539 438 263 14 7 402 6 435 7.96e-36 137
Msa0217810 MtrunA17_Chr8g0336321 28.539 438 263 14 7 402 6 435 1.73e-35 136
Msa0217810 MtrunA17_Chr4g0039881 25.942 451 280 17 17 429 1 435 9.93e-34 131
Msa0217810 MtrunA17_Chr4g0040721 53.571 84 39 0 155 238 2 85 7.47e-26 100
Msa0217810 MtrunA17_Chr8g0366391 25.840 476 279 19 1 417 1 461 1.68e-25 108
Msa0217810 MtrunA17_Chr4g0044501 25.949 474 279 18 1 417 1 459 4.88e-25 107
Msa0217810 MtrunA17_Chr2g0283071 57.971 69 29 0 17 85 9 77 1.00e-22 91.3
Msa0217810 MtrunA17_Chr4g0014061 25.050 499 269 19 6 432 7 472 1.20e-21 97.1
Msa0217810 MtrunA17_Chr4g0044481 26.225 408 219 16 8 368 27 399 6.24e-21 94.4
Msa0217810 MtrunA17_Chr1g0179901 24.622 463 270 19 7 402 15 465 7.34e-21 94.7
Msa0217810 MtrunA17_Chr7g0275681 25.427 468 271 21 8 414 12 462 7.50e-20 91.7
Msa0217810 MtrunA17_Chr8g0369341 23.431 478 299 14 8 431 7 471 9.02e-20 91.3
Msa0217810 MtrunA17_Chr7g0243681 22.774 483 302 17 7 431 10 479 1.35e-19 90.9
Msa0217810 MtrunA17_Chr7g0265051 24.454 458 264 18 5 395 6 448 2.54e-19 90.1
Msa0217810 MtrunA17_Chr8g0336691 26.077 441 256 16 7 408 479 888 6.83e-19 89.7
Msa0217810 MtrunA17_Chr8g0336691 24.947 469 254 17 7 408 918 1355 4.69e-16 80.9
Msa0217810 MtrunA17_Chr8g0336691 37.864 103 62 2 291 393 336 436 1.56e-12 70.1
Msa0217810 MtrunA17_Chr6g0477011 26.165 279 179 10 6 270 14 279 1.79e-18 85.9
Msa0217810 MtrunA17_Chr7g0243631 22.403 491 299 16 7 431 12 486 5.80e-18 85.9
Msa0217810 MtrunA17_Chr3g0092031 34.532 139 87 3 291 429 61 195 8.40e-18 81.6
Msa0217810 MtrunA17_Chr5g0419771 25.910 467 263 18 7 406 35 485 9.14e-18 85.5
Msa0217810 MtrunA17_Chr8g0347271 25.527 474 279 19 5 426 17 468 1.00e-17 85.1
Msa0217810 MtrunA17_Chr5g0419761 23.739 476 278 20 7 414 8 466 1.22e-17 85.1
Msa0217810 MtrunA17_Chr3g0079711 35.664 143 85 3 292 430 51 190 1.48e-17 80.5
Msa0217810 MtrunA17_Chr6g0459311 23.820 445 273 15 9 401 14 444 3.31e-17 83.6
Msa0217810 MtrunA17_Chr7g0275511 36.496 137 83 3 292 428 339 471 3.68e-17 83.6
Msa0217810 MtrunA17_Chr4g0044511 23.265 490 287 21 7 431 39 504 7.47e-17 82.8
Msa0217810 MtrunA17_Chr3g0079731 36.508 126 77 2 285 410 336 458 1.86e-16 81.3
Msa0217810 MtrunA17_Chr8g0355221 25.888 394 212 18 64 395 75 450 2.39e-16 80.9
Msa0217810 MtrunA17_Chr8g0361371 25.745 470 248 20 9 408 8 446 2.76e-16 80.9
Msa0217810 MtrunA17_Chr7g0265141 22.680 485 295 18 8 426 9 479 2.94e-16 80.9
Msa0217810 MtrunA17_Chr7g0265151 22.689 476 276 15 5 409 6 460 3.95e-16 80.5
Msa0217810 MtrunA17_Chr2g0329111 21.569 459 291 15 9 411 7 452 4.35e-16 80.1
Msa0217810 MtrunA17_Chr8g0335161 23.414 457 264 17 8 401 6 439 7.50e-16 79.3
Msa0217810 MtrunA17_Chr6g0486251 25.390 449 261 19 9 401 7 437 7.68e-16 79.3
Msa0217810 MtrunA17_Chr6g0486201 25.390 449 261 19 9 401 7 437 7.68e-16 79.3
Msa0217810 MtrunA17_Chr8g0347281 34.559 136 84 4 292 426 336 467 8.03e-16 79.3
Msa0217810 MtrunA17_Chr1g0196881 37.755 98 59 2 335 431 1 97 9.99e-16 72.4
Msa0217810 MtrunA17_Chr7g0265041 22.961 466 280 17 8 407 11 463 1.12e-15 79.0
Msa0217810 MtrunA17_Chr7g0218791 23.059 438 256 17 8 393 5 413 1.14e-15 78.6
Msa0217810 MtrunA17_Chr3g0092021 29.012 162 104 5 6 158 16 175 1.42e-15 74.7
Msa0217810 MtrunA17_Chr7g0232401 40.000 110 63 3 291 399 330 437 1.57e-15 78.6
Msa0217810 MtrunA17_Chr8g0334831 37.815 119 71 2 292 408 336 453 1.96e-15 78.2
Msa0217810 MtrunA17_Chr7g0218821 22.976 457 272 19 8 411 5 434 2.26e-15 77.8
Msa0217810 MtrunA17_Chr7g0243861 21.443 499 312 16 1 431 1 487 2.62e-15 77.8
Msa0217810 MtrunA17_Chr6g0464861 22.517 453 277 20 8 414 11 435 2.90e-15 77.4
Msa0217810 MtrunA17_Chr5g0427581 30.464 151 100 4 11 157 1 150 3.17e-15 72.8
Msa0217810 MtrunA17_Chr5g0401851 20.833 480 269 16 3 401 5 454 4.04e-15 77.4
Msa0217810 MtrunA17_Chr7g0243781 24.082 490 285 18 7 431 8 475 5.88e-15 76.6
Msa0217810 MtrunA17_Chr8g0336651 38.983 118 68 3 291 408 1106 1219 6.25e-15 77.4
Msa0217810 MtrunA17_Chr8g0336651 33.051 118 75 3 291 408 327 440 3.57e-11 65.5
Msa0217810 MtrunA17_Chr6g0449931 38.136 118 69 3 291 408 330 443 6.64e-15 76.6
Msa0217810 MtrunA17_Chr8g0335141 35.714 112 69 2 292 401 331 441 7.90e-15 76.3
Msa0217810 MtrunA17_Chr4g0011051 23.326 463 266 20 5 395 6 451 1.20e-14 75.9
Msa0217810 MtrunA17_Chr7g0243871 22.607 491 288 18 7 431 8 472 1.30e-14 75.5
Msa0217810 MtrunA17_Chr7g0232411 31.915 141 91 4 287 426 324 460 1.61e-14 75.5
Msa0217810 MtrunA17_Chr6g0464841 23.179 453 267 21 8 410 11 432 1.65e-14 75.1
Msa0217810 MtrunA17_Chr8g0377921 35.043 117 72 4 293 408 326 439 2.52e-14 74.7
Msa0217810 MtrunA17_Chr6g0464881 32.867 143 89 6 291 432 319 455 2.89e-14 74.3
Msa0217810 MtrunA17_Chr5g0431371 24.256 437 273 19 8 408 10 424 3.50e-14 74.3
Msa0217810 MtrunA17_Chr7g0243771 20.988 486 308 16 7 431 5 475 3.72e-14 74.3
Msa0217810 MtrunA17_Chr5g0403641 33.333 141 91 3 291 430 363 501 3.73e-14 74.3
Msa0217810 MtrunA17_Chr5g0431361 21.839 435 289 17 8 408 12 429 3.89e-14 73.9
Msa0217810 MtrunA17_Chr8g0377941 33.803 142 89 5 293 432 324 462 4.39e-14 73.9
Msa0217810 MtrunA17_Chr7g0232391 33.613 119 75 3 292 410 329 443 6.10e-14 73.6
Msa0217810 MtrunA17_Chr5g0414331 32.394 142 91 4 291 432 317 453 9.33e-14 72.8
Msa0217810 MtrunA17_Chr6g0462571 34.677 124 77 3 285 408 318 437 1.19e-13 72.8
Msa0217810 MtrunA17_Chr8g0339461 36.000 125 76 3 285 409 328 448 1.20e-13 72.8
Msa0217810 MtrunA17_Chr7g0265101 21.806 454 283 17 5 395 6 450 1.49e-13 72.4
Msa0217810 MtrunA17_Chr5g0416741 21.888 466 280 17 7 407 12 458 1.55e-13 72.4
Msa0217810 MtrunA17_Chr7g0243711 29.167 216 113 9 253 431 104 316 1.67e-13 71.2
Msa0217810 MtrunA17_Chr6g0462531 24.890 454 255 20 9 401 5 433 1.73e-13 72.0
Msa0217810 MtrunA17_Chr8g0339451 37.209 129 76 4 281 409 317 440 1.74e-13 72.0
Msa0217810 MtrunA17_Chr6g0462541 34.746 118 73 3 291 408 326 439 1.83e-13 72.0
Msa0217810 MtrunA17_Chr1g0153461 37.097 124 74 3 285 408 69 188 1.84e-13 69.3
Msa0217810 MtrunA17_Chr5g0414321 34.286 140 87 5 291 428 315 451 1.93e-13 72.0
Msa0217810 MtrunA17_Chr4g0072771 23.516 455 291 19 7 424 24 458 2.19e-13 71.6
Msa0217810 MtrunA17_Chr8g0336731 36.752 117 70 3 292 408 354 466 2.90e-13 71.6
Msa0217810 MtrunA17_Chr5g0432731 26.872 227 137 7 215 414 54 278 3.54e-13 70.1
Msa0217810 MtrunA17_Chr6g0462521 33.607 122 77 3 280 401 302 419 4.08e-13 70.9
Msa0217810 MtrunA17_Chr8g0361411 23.788 433 235 18 1 372 1 399 7.89e-13 70.1
Msa0217810 MtrunA17_Chr5g0428081 29.101 189 91 6 253 399 262 449 8.79e-13 70.1
Msa0217810 MtrunA17_Chr8g0336741 36.752 117 70 3 292 408 335 447 9.30e-13 69.7
Msa0217810 MtrunA17_Chr7g0265111 23.690 477 278 17 1 406 28 489 9.89e-13 70.1
Msa0217810 MtrunA17_Chr7g0232331 36.885 122 73 3 287 408 324 441 1.15e-12 69.7
Msa0217810 MtrunA17_Chr6g0454141 22.565 421 260 15 8 369 10 423 1.32e-12 69.3
Msa0217810 MtrunA17_Chr7g0232311 34.783 115 73 2 292 406 327 439 1.68e-12 68.9
Msa0217810 MtrunA17_Chr1g0153451 36.752 117 70 3 292 408 327 439 1.84e-12 68.9
Msa0217810 MtrunA17_Chr7g0232341 36.885 122 73 3 287 408 324 441 2.06e-12 68.9
Msa0217810 MtrunA17_Chr7g0218811 32.031 128 81 4 297 424 324 445 2.09e-12 68.6
Msa0217810 MtrunA17_Chr3g0122001 31.746 126 83 3 307 431 350 473 2.74e-12 68.9
Msa0217810 MtrunA17_Chr3g0122001 33.858 127 78 5 307 431 830 952 9.19e-12 67.4
Msa0217810 MtrunA17_Chr4g0040741 52.542 59 23 1 11 64 1 59 3.37e-12 62.0
Msa0217810 MtrunA17_Chr8g0339601 36.441 118 71 3 292 409 194 307 4.07e-12 67.0
Msa0217810 MtrunA17_Chr7g0218311 32.787 122 71 4 291 402 335 455 4.84e-12 67.8
Msa0217810 MtrunA17_Chr4g0072761 23.333 450 274 17 7 414 14 434 5.39e-12 67.4
Msa0217810 MtrunA17_Chr3g0121991 33.858 127 78 5 307 431 423 545 6.04e-12 67.4
Msa0217810 MtrunA17_Chr6g0464921 34.234 111 68 4 300 410 328 433 6.86e-12 67.0
Msa0217810 MtrunA17_Chr8g0339441 34.746 118 73 3 292 409 293 406 7.05e-12 67.0
Msa0217810 MtrunA17_Chr4g0040731 45.283 53 29 0 94 146 1 53 7.10e-12 60.5
Msa0217810 MtrunA17_Chr4g0066131 29.747 158 90 6 291 430 325 479 9.00e-12 66.6
Msa0217810 MtrunA17_Chr7g0250001 27.933 179 102 7 253 410 253 425 1.11e-11 66.6
Msa0217810 MtrunA17_Chr2g0294921 32.174 115 68 3 291 396 482 595 1.41e-11 66.6
Msa0217810 MtrunA17_Chr5g0448551 23.800 479 265 21 9 423 8 450 1.44e-11 66.2
Msa0217810 MtrunA17_Chr5g0427571 29.018 224 114 7 218 401 50 268 1.54e-11 65.1
Msa0217810 MtrunA17_Chr8g0370941 31.405 121 79 3 291 408 345 464 1.60e-11 66.2
Msa0217810 MtrunA17_Chr5g0410941 33.913 115 66 3 291 396 341 454 1.61e-11 66.2
Msa0217810 MtrunA17_Chr7g0235051 21.413 467 267 17 7 414 10 435 1.91e-11 65.9
Msa0217810 MtrunA17_Chr8g0334851 30.400 125 78 4 292 409 333 455 2.63e-11 65.5
Msa0217810 MtrunA17_Chr2g0283081 57.447 47 20 0 94 140 1 47 2.76e-11 58.5
Msa0217810 MtrunA17_Chr6g0463891 20.815 466 291 18 7 409 11 461 2.81e-11 65.5
Msa0217810 MtrunA17_Chr6g0462551 30.645 124 82 3 285 408 321 440 3.19e-11 65.1
Msa0217810 MtrunA17_Chr6g0454121 23.026 456 271 17 8 401 10 447 3.49e-11 65.1
Msa0217810 MtrunA17_Chr1g0159551 33.607 122 77 3 291 411 320 438 6.15e-11 64.3
Msa0217810 MtrunA17_Chr2g0294941 29.851 134 80 4 286 410 226 354 9.56e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217810 AT5G54010.1 39.514 453 237 8 7 432 5 447 4.32e-113 340
Msa0217810 AT5G53990.1 38.631 453 235 7 7 432 5 441 8.06e-111 333
Msa0217810 AT4G27570.1 37.939 456 239 9 7 432 6 447 3.19e-110 332
Msa0217810 AT4G27560.1 38.158 456 238 8 7 432 6 447 2.23e-109 330
Msa0217810 AT4G09500.2 38.901 455 235 11 5 432 3 441 1.82e-107 325
Msa0217810 AT2G22930.1 39.341 455 233 8 5 432 3 441 9.05e-106 320
Msa0217810 AT3G29630.1 37.363 455 237 8 7 430 5 442 1.28e-105 320
Msa0217810 AT1G64920.1 37.118 458 239 8 7 432 5 445 8.78e-105 318
Msa0217810 AT5G54060.1 38.612 461 242 8 7 432 12 466 1.97e-104 318
Msa0217810 AT1G64910.1 37.307 453 241 7 7 432 5 441 7.21e-103 313
Msa0217810 AT3G29630.2 36.504 452 219 9 7 430 5 416 5.44e-98 300
Msa0217810 AT1G50580.1 37.665 454 233 9 7 429 5 439 1.39e-96 297
Msa0217810 AT4G09500.1 36.784 454 221 12 5 432 3 416 1.53e-93 288
Msa0217810 AT5G65550.1 29.574 470 273 19 5 430 6 461 8.90e-55 189
Msa0217810 AT5G49690.1 29.911 448 279 12 7 426 9 449 2.81e-52 182
Msa0217810 AT2G22590.1 30.238 463 272 17 7 428 14 466 1.70e-48 172
Msa0217810 AT2G22930.2 39.269 219 119 3 5 223 3 207 2.38e-48 167
Msa0217810 AT2G22930.2 36.190 105 62 3 331 432 187 289 2.35e-13 70.9
Msa0217810 AT1G51210.1 26.157 432 268 16 8 407 20 432 1.97e-26 110
Msa0217810 AT5G03490.1 24.773 440 282 13 2 408 14 437 4.50e-26 110
Msa0217810 AT2G15490.3 25.055 455 275 14 7 404 6 451 1.69e-22 100
Msa0217810 AT2G15490.1 24.891 458 275 14 7 404 6 454 4.05e-22 99.0
Msa0217810 AT2G15480.2 25.000 484 295 17 7 431 9 483 9.29e-22 97.8
Msa0217810 AT4G34135.1 25.495 455 245 20 7 390 10 441 3.07e-21 96.3
Msa0217810 AT2G36750.1 26.258 457 257 21 5 396 7 448 3.77e-21 95.9
Msa0217810 AT2G15480.1 24.638 483 294 16 7 429 9 481 9.60e-21 94.7
Msa0217810 AT1G73880.1 23.990 421 251 16 2 371 8 410 1.39e-20 94.4
Msa0217810 AT2G16890.2 25.285 439 275 20 8 403 9 437 1.73e-20 94.0
Msa0217810 AT1G10400.1 24.197 467 299 18 7 426 6 464 3.09e-20 93.2
Msa0217810 AT2G36770.1 25.652 460 270 18 5 401 11 461 4.62e-20 92.8
Msa0217810 AT4G34131.1 25.054 467 270 18 1 402 1 452 1.29e-19 91.3
Msa0217810 AT3G53150.1 24.313 473 266 19 7 401 21 479 1.37e-19 91.3
Msa0217810 AT1G05675.1 25.561 446 264 17 8 408 6 428 6.41e-19 89.0
Msa0217810 AT2G31750.1 23.884 448 273 16 8 410 8 432 1.57e-18 87.8
Msa0217810 AT2G31750.2 23.736 455 279 16 1 410 1 432 2.56e-18 87.4
Msa0217810 AT4G34138.1 23.554 484 277 16 7 422 10 468 3.62e-18 87.0
Msa0217810 AT2G16890.3 24.882 422 266 19 8 386 9 422 1.27e-17 85.1
Msa0217810 AT2G36800.1 25.000 464 267 20 6 401 10 460 1.31e-17 85.5
Msa0217810 AT5G14860.1 23.736 455 271 17 8 403 8 445 1.51e-17 85.1
Msa0217810 AT2G36780.1 25.847 472 254 24 5 401 11 461 2.03e-17 84.7
Msa0217810 AT4G36770.1 35.172 145 83 4 265 409 307 440 2.42e-17 84.3
Msa0217810 AT1G05680.1 24.838 463 246 24 8 408 6 428 1.41e-16 82.0
Msa0217810 AT3G53160.1 23.542 463 281 18 1 401 1 452 6.04e-16 80.1
Msa0217810 AT2G36760.1 23.230 452 278 17 5 396 11 453 1.14e-15 79.3
Msa0217810 AT2G31790.1 24.130 460 255 19 8 408 8 432 1.16e-15 79.3
Msa0217810 AT2G43820.1 22.103 466 278 18 8 423 7 437 1.28e-15 79.0
Msa0217810 AT4G01070.1 37.705 122 72 3 292 413 331 448 2.45e-15 78.2
Msa0217810 AT2G36790.1 23.028 469 277 23 2 401 7 460 6.86e-15 77.0
Msa0217810 AT2G18570.1 32.203 118 79 1 291 408 326 442 1.72e-14 75.5
Msa0217810 AT2G43840.2 33.588 131 84 2 292 422 309 436 3.24e-14 74.7
Msa0217810 AT2G43840.1 33.588 131 84 2 292 422 309 436 3.27e-14 74.7
Msa0217810 AT4G15550.1 34.959 123 72 5 290 409 333 450 5.28e-14 74.3
Msa0217810 AT1G01420.1 37.097 124 71 4 291 413 330 447 1.88e-13 72.4
Msa0217810 AT1G01420.2 37.097 124 71 4 291 413 333 450 1.93e-13 72.4
Msa0217810 AT2G18560.1 27.966 118 84 1 291 408 236 352 4.55e-13 70.9
Msa0217810 AT1G06000.1 41.558 77 44 1 292 368 299 374 9.79e-13 70.1
Msa0217810 AT3G50740.1 32.258 124 81 2 291 414 334 454 1.31e-12 69.7
Msa0217810 AT1G05560.1 31.298 131 84 4 292 422 317 441 1.94e-12 69.3
Msa0217810 AT1G05560.2 32.061 131 83 4 292 422 367 491 2.23e-12 69.3
Msa0217810 AT2G29730.1 29.231 195 104 8 237 399 240 432 7.75e-12 67.4
Msa0217810 AT1G24100.1 29.545 132 89 3 291 422 321 448 1.25e-11 66.6
Msa0217810 AT3G21560.1 30.872 149 87 6 292 428 328 472 1.26e-11 67.0

Find 81 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAAACCTGTTCTGCTTTC+AGG 0.094372 2_1:-64764616 Msa0217810:CDS
TCCCACAGAAAACTAGAATT+TGG 0.233485 2_1:-64764757 Msa0217810:CDS
AGGATATTGAACTTCTTCTA+AGG 0.265020 2_1:-64765020 Msa0217810:CDS
AAATGGTTAAAATGGCTTAA+AGG 0.265256 2_1:-64764553 Msa0217810:CDS
CCAAGGTAAGCTGATGATAT+TGG 0.272835 2_1:+64764898 None:intergenic
ATCACAGTTCCTCATGTTAA+TGG 0.297077 2_1:-64765126 Msa0217810:CDS
TCATTCTTGCATTCATGATA+TGG 0.306881 2_1:+64764187 None:intergenic
CTCTCTCATTAAAACCCTTC+AGG 0.328668 2_1:+64764370 None:intergenic
TTCATGCGAATAAAACTTGA+TGG 0.329442 2_1:+64764795 None:intergenic
GGAACAAAGGTAATAAGATT+TGG 0.340347 2_1:+64765150 None:intergenic
GATCTCATGAAACCACCTTC+AGG 0.343673 2_1:-64764832 Msa0217810:CDS
GTTCAATATCCTTCTCAGTT+TGG 0.347676 2_1:+64765031 None:intergenic
TAAAACTTGATGGATGAATC+AGG 0.371051 2_1:+64764805 None:intergenic
AAAGGAAAAGGAATTGTATA+TGG 0.374748 2_1:-64764345 Msa0217810:CDS
GCAGCACTTAAGCCACCTAT+TGG 0.380205 2_1:-64764418 Msa0217810:CDS
AAGGAATTGTATATGGAAGT+TGG 0.384799 2_1:-64764338 Msa0217810:CDS
GCCACCAAAAGCTACATTAG+AGG 0.386730 2_1:-64764578 Msa0217810:CDS
AATGAGAGAGTTAAAGGAAA+AGG 0.386889 2_1:-64764357 Msa0217810:CDS
GGCTTAAGTGCTGCAAGAAA+TGG 0.387827 2_1:+64764427 None:intergenic
TTGTTAGAGAGGCGGAGAAA+TGG 0.392849 2_1:+64765252 None:intergenic
TTTGGTGGCTCAGGTAATAT+AGG 0.395769 2_1:+64764592 None:intergenic
TTACACGATCGCTCTGACAT+AGG 0.396357 2_1:-64764721 Msa0217810:CDS
AATGTTTCCATGGTTTGCTA+TGG 0.406344 2_1:-64765286 Msa0217810:CDS
AAAGGATGCAGTGAAATTGA+TGG 0.407185 2_1:-64764670 Msa0217810:CDS
AAATCAAAGAAAACTATTTG+TGG 0.424765 2_1:+64764988 None:intergenic
ATCTCATGAAACCACCTTCA+GGG 0.449830 2_1:-64764831 Msa0217810:CDS
TTAACATGAGGAACTGTGAT+AGG 0.452014 2_1:+64765129 None:intergenic
ATGTTTCCATGGTTTGCTAT+GGG 0.453158 2_1:-64765285 Msa0217810:CDS
ATGGATGATGAGAATGAAGT+TGG 0.453273 2_1:-64764069 Msa0217800:CDS
TCAATAGTCTGAAATCCAAT+AGG 0.454018 2_1:+64764403 None:intergenic
ATTCTTGAACACCCTTCTGT+TGG 0.454707 2_1:-64764300 Msa0217800:CDS
TCTAACAAATTAGCAATAAG+AGG 0.459115 2_1:-64765237 Msa0217810:CDS
ATAGGACCTGAAAGCAGAAC+AGG 0.461457 2_1:+64764610 None:intergenic
CTTGCATTCATGATATGGTC+AGG 0.468145 2_1:+64764192 None:intergenic
GTTGAGAAAGGTGATGAAGA+TGG 0.473698 2_1:-64764135 Msa0217800:CDS
ATCCTTCTCAGTTTGGTCCA+TGG 0.480528 2_1:+64765038 None:intergenic
TTGAAGAAGCTTTACCTGAA+GGG 0.490189 2_1:-64764384 Msa0217810:CDS
AATCTTCCTTGACTATGTCT+TGG 0.492827 2_1:+64764868 None:intergenic
CCCTCTCATTGCTACATCCA+TGG 0.494384 2_1:-64765055 Msa0217810:CDS
TGCACATAGCAATGTTTCCA+TGG 0.504753 2_1:-64765296 Msa0217810:CDS
TCAGATGCAGTTGCTTTCAA+AGG 0.514738 2_1:-64764688 Msa0217810:CDS
CCAATATCATCAGCTTACCT+TGG 0.525225 2_1:-64764898 Msa0217810:CDS
TATGTCTTGGTATATTTCCA+AGG 0.530714 2_1:+64764881 None:intergenic
TGTTTCCATGGTTTGCTATG+GGG 0.545112 2_1:-64765284 Msa0217810:CDS
GGATATTGAACTTCTTCTAA+GGG 0.545788 2_1:-64765019 Msa0217810:CDS
GTTGGTGTAGAAGTTGAGAA+AGG 0.554703 2_1:-64764147 Msa0217800:CDS
AGGATTCAAACCTGGTTCTG+TGG 0.559933 2_1:-64764533 Msa0217810:intron
AGAAAACTAGAATTTGGAAG+TGG 0.563912 2_1:-64764751 Msa0217810:CDS
TGGAGCTGCTTCTATAACTG+AGG 0.565923 2_1:-64764259 Msa0217800:CDS
ATTGAAGAAGCTTTACCTGA+AGG 0.566056 2_1:-64764385 Msa0217810:CDS
ATTGCTATGTGCAAAGGAGG+AGG 0.570238 2_1:+64765306 None:intergenic
GCACAATAAACCACAGAACC+AGG 0.572498 2_1:+64764523 None:intergenic
TTATTGCTAATTTGTTAGAG+AGG 0.575257 2_1:+64765241 None:intergenic
TGGCTTAAAGGATTCAAACC+TGG 0.583848 2_1:-64764541 Msa0217810:CDS
AATGATGAGTGAAAAGATGA+AGG 0.586314 2_1:-64764169 Msa0217800:CDS
AATGAGAGGGAATAAAGAAG+AGG 0.588167 2_1:+64765068 None:intergenic
GTTATGAAACATCCAACAGA+AGG 0.588945 2_1:+64764288 None:intergenic
ATGAGTGAAAAGATGAAGGT+TGG 0.593081 2_1:-64764165 Msa0217800:CDS
AACATTGCTATGTGCAAAGG+AGG 0.593375 2_1:+64765303 None:intergenic
CAAAGGAGGAGGAGAATCCA+TGG 0.596316 2_1:+64765317 None:intergenic
GGATGTTTCATAACACATTG+TGG 0.601065 2_1:-64764279 Msa0217800:CDS
GGAAACATTGCTATGTGCAA+AGG 0.601320 2_1:+64765300 None:intergenic
AAAACTTGATGGATGAATCA+GGG 0.602785 2_1:+64764806 None:intergenic
ATGAGAGGGAATAAAGAAGA+GGG 0.605864 2_1:+64765069 None:intergenic
TTGCTAATTTGTTAGAGAGG+CGG 0.613040 2_1:+64765244 None:intergenic
GATGAATCAGGGAACCCTGA+AGG 0.613809 2_1:+64764817 None:intergenic
CCATGGATGTAGCAATGAGA+GGG 0.615112 2_1:+64765055 None:intergenic
ATCCATGGACCAAACTGAGA+AGG 0.618561 2_1:-64765040 Msa0217810:CDS
ACTTGTTAACACGTGTCTGT+TGG 0.626198 2_1:-64764235 Msa0217800:CDS
ATAGTCTGAAATCCAATAGG+TGG 0.626788 2_1:+64764406 None:intergenic
AGGAACTGTGATAGGAACAA+AGG 0.628656 2_1:+64765137 None:intergenic
TCCATGGATGTAGCAATGAG+AGG 0.638914 2_1:+64765054 None:intergenic
AATATACCAAGACATAGTCA+AGG 0.642666 2_1:-64764874 Msa0217810:CDS
GGAGCTGCTTCTATAACTGA+GGG 0.647559 2_1:-64764258 Msa0217800:CDS
GAATCAGGGAACCCTGAAGG+TGG 0.649118 2_1:+64764820 None:intergenic
CAAAGCTGTGAAGATTGTGA+TGG 0.655994 2_1:-64764088 Msa0217800:CDS
AAGTGCCCCATAGCAAACCA+TGG 0.661811 2_1:+64765279 None:intergenic
GAAGTAGTTTCAGCATCATG+AGG 0.663497 2_1:+64765099 None:intergenic
TGAGGAAGACCATTAACATG+AGG 0.685206 2_1:+64765117 None:intergenic
TTATGAAACATCCAACAGAA+GGG 0.698749 2_1:+64764289 None:intergenic
ATATGGTCAGGATCTACACG+TGG 0.742139 2_1:+64764204 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTTTGATTTTCAATAT+TGG - chr2_1:64764297-64764316 Msa0217800:CDS 15.0%
!!! TTTTCTTTGATTTTCAATAT+TGG - chr2_1:64764297-64764316 Msa0217800:CDS 15.0%
!! AAATCAAAGAAAACTATTTG+TGG + chr2_1:64764290-64764309 None:intergenic 20.0%
!!! GATTATATTCAAACTGTTTT+TGG - chr2_1:64764638-64764657 Msa0217810:CDS 20.0%
!!! AGAAACTGATTTTTTTCTAA+TGG + chr2_1:64764794-64764813 None:intergenic 20.0%
!! AAATCAAAGAAAACTATTTG+TGG + chr2_1:64764290-64764309 None:intergenic 20.0%
!!! GATTATATTCAAACTGTTTT+TGG - chr2_1:64764638-64764657 Msa0217810:CDS 20.0%
!!! AGAAACTGATTTTTTTCTAA+TGG + chr2_1:64764794-64764813 None:intergenic 20.0%
!!! TTATTGCTAATTTGTTAGAG+AGG + chr2_1:64764037-64764056 None:intergenic 25.0%
! TCTAACAAATTAGCAATAAG+AGG - chr2_1:64764038-64764057 Msa0217800:CDS 25.0%
! TAGAGGAAAAATGGTTAAAA+TGG - chr2_1:64764714-64764733 Msa0217810:CDS 25.0%
! AAATGGTTAAAATGGCTTAA+AGG - chr2_1:64764722-64764741 Msa0217810:CDS 25.0%
! AAAGGAAAAGGAATTGTATA+TGG - chr2_1:64764930-64764949 Msa0217810:CDS 25.0%
!!! TTATTGCTAATTTGTTAGAG+AGG + chr2_1:64764037-64764056 None:intergenic 25.0%
! TCTAACAAATTAGCAATAAG+AGG - chr2_1:64764038-64764057 Msa0217800:CDS 25.0%
! TAGAGGAAAAATGGTTAAAA+TGG - chr2_1:64764714-64764733 Msa0217810:CDS 25.0%
! AAATGGTTAAAATGGCTTAA+AGG - chr2_1:64764722-64764741 Msa0217810:CDS 25.0%
! AAAGGAAAAGGAATTGTATA+TGG - chr2_1:64764930-64764949 Msa0217810:CDS 25.0%
!!! ACTTGTTGAGTGTTTTTTCA+GGG + chr2_1:64764085-64764104 None:intergenic 30.0%
!!! AACTTGTTGAGTGTTTTTTC+AGG + chr2_1:64764086-64764105 None:intergenic 30.0%
GGAACAAAGGTAATAAGATT+TGG + chr2_1:64764128-64764147 None:intergenic 30.0%
AGGATATTGAACTTCTTCTA+AGG - chr2_1:64764255-64764274 Msa0217800:CDS 30.0%
GGATATTGAACTTCTTCTAA+GGG - chr2_1:64764256-64764275 Msa0217800:CDS 30.0%
TATGTCTTGGTATATTTCCA+AGG + chr2_1:64764397-64764416 None:intergenic 30.0%
AATATACCAAGACATAGTCA+AGG - chr2_1:64764401-64764420 Msa0217810:CDS 30.0%
! AAAACTTGATGGATGAATCA+GGG + chr2_1:64764472-64764491 None:intergenic 30.0%
! TAAAACTTGATGGATGAATC+AGG + chr2_1:64764473-64764492 None:intergenic 30.0%
TTCATGCGAATAAAACTTGA+TGG + chr2_1:64764483-64764502 None:intergenic 30.0%
!!! TCCAAATTCTAGTTTTCTGT+GGG + chr2_1:64764522-64764541 None:intergenic 30.0%
!!! TTCCAAATTCTAGTTTTCTG+TGG + chr2_1:64764523-64764542 None:intergenic 30.0%
AGAAAACTAGAATTTGGAAG+TGG - chr2_1:64764524-64764543 Msa0217810:intron 30.0%
! TTTTCCTCTAATGTAGCTTT+TGG + chr2_1:64764704-64764723 None:intergenic 30.0%
AAGCTACATTAGAGGAAAAA+TGG - chr2_1:64764705-64764724 Msa0217810:CDS 30.0%
! TCAATAGTCTGAAATCCAAT+AGG + chr2_1:64764875-64764894 None:intergenic 30.0%
!! GGTTTTAATGAGAGAGTTAA+AGG - chr2_1:64764912-64764931 Msa0217810:CDS 30.0%
AATGAGAGAGTTAAAGGAAA+AGG - chr2_1:64764918-64764937 Msa0217810:CDS 30.0%
AAGGAATTGTATATGGAAGT+TGG - chr2_1:64764937-64764956 Msa0217810:CDS 30.0%
TTATGAAACATCCAACAGAA+GGG + chr2_1:64764989-64765008 None:intergenic 30.0%
TCATTCTTGCATTCATGATA+TGG + chr2_1:64765091-64765110 None:intergenic 30.0%
AATGATGAGTGAAAAGATGA+AGG - chr2_1:64765106-64765125 Msa0217810:CDS 30.0%
!!! ACTTGTTGAGTGTTTTTTCA+GGG + chr2_1:64764085-64764104 None:intergenic 30.0%
!!! AACTTGTTGAGTGTTTTTTC+AGG + chr2_1:64764086-64764105 None:intergenic 30.0%
GGAACAAAGGTAATAAGATT+TGG + chr2_1:64764128-64764147 None:intergenic 30.0%
AGGATATTGAACTTCTTCTA+AGG - chr2_1:64764255-64764274 Msa0217800:CDS 30.0%
GGATATTGAACTTCTTCTAA+GGG - chr2_1:64764256-64764275 Msa0217800:CDS 30.0%
TATGTCTTGGTATATTTCCA+AGG + chr2_1:64764397-64764416 None:intergenic 30.0%
AATATACCAAGACATAGTCA+AGG - chr2_1:64764401-64764420 Msa0217810:CDS 30.0%
! AAAACTTGATGGATGAATCA+GGG + chr2_1:64764472-64764491 None:intergenic 30.0%
! TAAAACTTGATGGATGAATC+AGG + chr2_1:64764473-64764492 None:intergenic 30.0%
TTCATGCGAATAAAACTTGA+TGG + chr2_1:64764483-64764502 None:intergenic 30.0%
!!! TCCAAATTCTAGTTTTCTGT+GGG + chr2_1:64764522-64764541 None:intergenic 30.0%
!!! TTCCAAATTCTAGTTTTCTG+TGG + chr2_1:64764523-64764542 None:intergenic 30.0%
AGAAAACTAGAATTTGGAAG+TGG - chr2_1:64764524-64764543 Msa0217810:intron 30.0%
! TTTTCCTCTAATGTAGCTTT+TGG + chr2_1:64764704-64764723 None:intergenic 30.0%
AAGCTACATTAGAGGAAAAA+TGG - chr2_1:64764705-64764724 Msa0217810:CDS 30.0%
! TCAATAGTCTGAAATCCAAT+AGG + chr2_1:64764875-64764894 None:intergenic 30.0%
!! GGTTTTAATGAGAGAGTTAA+AGG - chr2_1:64764912-64764931 Msa0217810:CDS 30.0%
AATGAGAGAGTTAAAGGAAA+AGG - chr2_1:64764918-64764937 Msa0217810:CDS 30.0%
AAGGAATTGTATATGGAAGT+TGG - chr2_1:64764937-64764956 Msa0217810:CDS 30.0%
TTATGAAACATCCAACAGAA+GGG + chr2_1:64764989-64765008 None:intergenic 30.0%
TCATTCTTGCATTCATGATA+TGG + chr2_1:64765091-64765110 None:intergenic 30.0%
AATGATGAGTGAAAAGATGA+AGG - chr2_1:64765106-64765125 Msa0217810:CDS 30.0%
!! AATGTTTCCATGGTTTGCTA+TGG - chr2_1:64763989-64764008 Msa0217800:CDS 35.0%
!! ATGTTTCCATGGTTTGCTAT+GGG - chr2_1:64763990-64764009 Msa0217800:CDS 35.0%
!! TTGCTAATTTGTTAGAGAGG+CGG + chr2_1:64764034-64764053 None:intergenic 35.0%
TTAACATGAGGAACTGTGAT+AGG + chr2_1:64764149-64764168 None:intergenic 35.0%
ATCACAGTTCCTCATGTTAA+TGG - chr2_1:64764149-64764168 Msa0217800:CDS 35.0%
ATGAGAGGGAATAAAGAAGA+GGG + chr2_1:64764209-64764228 None:intergenic 35.0%
AATGAGAGGGAATAAAGAAG+AGG + chr2_1:64764210-64764229 None:intergenic 35.0%
GTTCAATATCCTTCTCAGTT+TGG + chr2_1:64764247-64764266 None:intergenic 35.0%
!!! CCAAGTTTTTGAGTCAAGTT+TGG + chr2_1:64764326-64764345 None:intergenic 35.0%
CCAAACTTGACTCAAAAACT+TGG - chr2_1:64764323-64764342 Msa0217800:intron 35.0%
AATCTTCCTTGACTATGTCT+TGG + chr2_1:64764410-64764429 None:intergenic 35.0%
! TAGTTTTCTGTGGGAAACTA+GGG + chr2_1:64764513-64764532 None:intergenic 35.0%
TCCCACAGAAAACTAGAATT+TGG - chr2_1:64764518-64764537 Msa0217810:intron 35.0%
AAAGGATGCAGTGAAATTGA+TGG - chr2_1:64764605-64764624 Msa0217810:CDS 35.0%
TCTGTGGTTTATTGTGCATA+TGG - chr2_1:64764758-64764777 Msa0217810:CDS 35.0%
TATTGTGCATATGGAAGTGA+AGG - chr2_1:64764767-64764786 Msa0217810:CDS 35.0%
!! TTGCTTGGTCTTGAATTAAC+AGG - chr2_1:64764821-64764840 Msa0217810:CDS 35.0%
! ATAGTCTGAAATCCAATAGG+TGG + chr2_1:64764872-64764891 None:intergenic 35.0%
ATTGAAGAAGCTTTACCTGA+AGG - chr2_1:64764890-64764909 Msa0217810:CDS 35.0%
TTGAAGAAGCTTTACCTGAA+GGG - chr2_1:64764891-64764910 Msa0217810:CDS 35.0%
GTTATGAAACATCCAACAGA+AGG + chr2_1:64764990-64765009 None:intergenic 35.0%
GGATGTTTCATAACACATTG+TGG - chr2_1:64764996-64765015 Msa0217810:CDS 35.0%
ATGAGTGAAAAGATGAAGGT+TGG - chr2_1:64765110-64765129 Msa0217810:CDS 35.0%
ATGGATGATGAGAATGAAGT+TGG - chr2_1:64765206-64765225 Msa0217810:CDS 35.0%
!! AATGTTTCCATGGTTTGCTA+TGG - chr2_1:64763989-64764008 Msa0217800:CDS 35.0%
!! ATGTTTCCATGGTTTGCTAT+GGG - chr2_1:64763990-64764009 Msa0217800:CDS 35.0%
!! TTGCTAATTTGTTAGAGAGG+CGG + chr2_1:64764034-64764053 None:intergenic 35.0%
TTAACATGAGGAACTGTGAT+AGG + chr2_1:64764149-64764168 None:intergenic 35.0%
ATCACAGTTCCTCATGTTAA+TGG - chr2_1:64764149-64764168 Msa0217800:CDS 35.0%
ATGAGAGGGAATAAAGAAGA+GGG + chr2_1:64764209-64764228 None:intergenic 35.0%
AATGAGAGGGAATAAAGAAG+AGG + chr2_1:64764210-64764229 None:intergenic 35.0%
GTTCAATATCCTTCTCAGTT+TGG + chr2_1:64764247-64764266 None:intergenic 35.0%
!!! CCAAGTTTTTGAGTCAAGTT+TGG + chr2_1:64764326-64764345 None:intergenic 35.0%
CCAAACTTGACTCAAAAACT+TGG - chr2_1:64764323-64764342 Msa0217800:intron 35.0%
AATCTTCCTTGACTATGTCT+TGG + chr2_1:64764410-64764429 None:intergenic 35.0%
! TAGTTTTCTGTGGGAAACTA+GGG + chr2_1:64764513-64764532 None:intergenic 35.0%
TCCCACAGAAAACTAGAATT+TGG - chr2_1:64764518-64764537 Msa0217810:intron 35.0%
AAAGGATGCAGTGAAATTGA+TGG - chr2_1:64764605-64764624 Msa0217810:CDS 35.0%
TCTGTGGTTTATTGTGCATA+TGG - chr2_1:64764758-64764777 Msa0217810:CDS 35.0%
TATTGTGCATATGGAAGTGA+AGG - chr2_1:64764767-64764786 Msa0217810:CDS 35.0%
!! TTGCTTGGTCTTGAATTAAC+AGG - chr2_1:64764821-64764840 Msa0217810:CDS 35.0%
! ATAGTCTGAAATCCAATAGG+TGG + chr2_1:64764872-64764891 None:intergenic 35.0%
ATTGAAGAAGCTTTACCTGA+AGG - chr2_1:64764890-64764909 Msa0217810:CDS 35.0%
TTGAAGAAGCTTTACCTGAA+GGG - chr2_1:64764891-64764910 Msa0217810:CDS 35.0%
GTTATGAAACATCCAACAGA+AGG + chr2_1:64764990-64765009 None:intergenic 35.0%
GGATGTTTCATAACACATTG+TGG - chr2_1:64764996-64765015 Msa0217810:CDS 35.0%
ATGAGTGAAAAGATGAAGGT+TGG - chr2_1:64765110-64765129 Msa0217810:CDS 35.0%
ATGGATGATGAGAATGAAGT+TGG - chr2_1:64765206-64765225 Msa0217810:CDS 35.0%
AACATTGCTATGTGCAAAGG+AGG + chr2_1:64763975-64763994 None:intergenic 40.0%
GGAAACATTGCTATGTGCAA+AGG + chr2_1:64763978-64763997 None:intergenic 40.0%
TGCACATAGCAATGTTTCCA+TGG - chr2_1:64763979-64763998 Msa0217800:CDS 40.0%
!! TGTTTCCATGGTTTGCTATG+GGG - chr2_1:64763991-64764010 Msa0217800:CDS 40.0%
AGGAACTGTGATAGGAACAA+AGG + chr2_1:64764141-64764160 None:intergenic 40.0%
TGAGGAAGACCATTAACATG+AGG + chr2_1:64764161-64764180 None:intergenic 40.0%
GAAGTAGTTTCAGCATCATG+AGG + chr2_1:64764179-64764198 None:intergenic 40.0%
CCAAGGTAAGCTGATGATAT+TGG + chr2_1:64764380-64764399 None:intergenic 40.0%
CCAATATCATCAGCTTACCT+TGG - chr2_1:64764377-64764396 Msa0217810:CDS 40.0%
ATCTCATGAAACCACCTTCA+GGG - chr2_1:64764444-64764463 Msa0217810:intron 40.0%
!! CTAGTTTTCTGTGGGAAACT+AGG + chr2_1:64764514-64764533 None:intergenic 40.0%
! TCAGATGCAGTTGCTTTCAA+AGG - chr2_1:64764587-64764606 Msa0217810:CDS 40.0%
! TTTGGTGGCTCAGGTAATAT+AGG + chr2_1:64764686-64764705 None:intergenic 40.0%
! TCCTCTAATGTAGCTTTTGG+TGG + chr2_1:64764701-64764720 None:intergenic 40.0%
TGGCTTAAAGGATTCAAACC+TGG - chr2_1:64764734-64764753 Msa0217810:CDS 40.0%
!! CAGTTTCTAGAGTTGTTGCT+TGG - chr2_1:64764806-64764825 Msa0217810:CDS 40.0%
CTCTCTCATTAAAACCCTTC+AGG + chr2_1:64764908-64764927 None:intergenic 40.0%
ATTCTTGAACACCCTTCTGT+TGG - chr2_1:64764975-64764994 Msa0217810:CDS 40.0%
! ACTTGTTAACACGTGTCTGT+TGG - chr2_1:64765040-64765059 Msa0217810:CDS 40.0%
CTTGCATTCATGATATGGTC+AGG + chr2_1:64765086-64765105 None:intergenic 40.0%
GTTGGTGTAGAAGTTGAGAA+AGG - chr2_1:64765128-64765147 Msa0217810:CDS 40.0%
GTTGAGAAAGGTGATGAAGA+TGG - chr2_1:64765140-64765159 Msa0217810:CDS 40.0%
CAAAGCTGTGAAGATTGTGA+TGG - chr2_1:64765187-64765206 Msa0217810:CDS 40.0%
AACATTGCTATGTGCAAAGG+AGG + chr2_1:64763975-64763994 None:intergenic 40.0%
GGAAACATTGCTATGTGCAA+AGG + chr2_1:64763978-64763997 None:intergenic 40.0%
TGCACATAGCAATGTTTCCA+TGG - chr2_1:64763979-64763998 Msa0217800:CDS 40.0%
!! TGTTTCCATGGTTTGCTATG+GGG - chr2_1:64763991-64764010 Msa0217800:CDS 40.0%
AGGAACTGTGATAGGAACAA+AGG + chr2_1:64764141-64764160 None:intergenic 40.0%
TGAGGAAGACCATTAACATG+AGG + chr2_1:64764161-64764180 None:intergenic 40.0%
GAAGTAGTTTCAGCATCATG+AGG + chr2_1:64764179-64764198 None:intergenic 40.0%
CCAAGGTAAGCTGATGATAT+TGG + chr2_1:64764380-64764399 None:intergenic 40.0%
CCAATATCATCAGCTTACCT+TGG - chr2_1:64764377-64764396 Msa0217810:CDS 40.0%
ATCTCATGAAACCACCTTCA+GGG - chr2_1:64764444-64764463 Msa0217810:intron 40.0%
!! CTAGTTTTCTGTGGGAAACT+AGG + chr2_1:64764514-64764533 None:intergenic 40.0%
! TCAGATGCAGTTGCTTTCAA+AGG - chr2_1:64764587-64764606 Msa0217810:CDS 40.0%
! TTTGGTGGCTCAGGTAATAT+AGG + chr2_1:64764686-64764705 None:intergenic 40.0%
! TCCTCTAATGTAGCTTTTGG+TGG + chr2_1:64764701-64764720 None:intergenic 40.0%
TGGCTTAAAGGATTCAAACC+TGG - chr2_1:64764734-64764753 Msa0217810:CDS 40.0%
!! CAGTTTCTAGAGTTGTTGCT+TGG - chr2_1:64764806-64764825 Msa0217810:CDS 40.0%
CTCTCTCATTAAAACCCTTC+AGG + chr2_1:64764908-64764927 None:intergenic 40.0%
ATTCTTGAACACCCTTCTGT+TGG - chr2_1:64764975-64764994 Msa0217810:CDS 40.0%
! ACTTGTTAACACGTGTCTGT+TGG - chr2_1:64765040-64765059 Msa0217810:CDS 40.0%
CTTGCATTCATGATATGGTC+AGG + chr2_1:64765086-64765105 None:intergenic 40.0%
GTTGGTGTAGAAGTTGAGAA+AGG - chr2_1:64765128-64765147 Msa0217810:CDS 40.0%
GTTGAGAAAGGTGATGAAGA+TGG - chr2_1:64765140-64765159 Msa0217810:CDS 40.0%
CAAAGCTGTGAAGATTGTGA+TGG - chr2_1:64765187-64765206 Msa0217810:CDS 40.0%
ATTGCTATGTGCAAAGGAGG+AGG + chr2_1:64763972-64763991 None:intergenic 45.0%
TTGTTAGAGAGGCGGAGAAA+TGG + chr2_1:64764026-64764045 None:intergenic 45.0%
CCATGGATGTAGCAATGAGA+GGG + chr2_1:64764223-64764242 None:intergenic 45.0%
TCCATGGATGTAGCAATGAG+AGG + chr2_1:64764224-64764243 None:intergenic 45.0%
ATCCATGGACCAAACTGAGA+AGG - chr2_1:64764235-64764254 Msa0217800:CDS 45.0%
ATCCTTCTCAGTTTGGTCCA+TGG + chr2_1:64764240-64764259 None:intergenic 45.0%
GATCTCATGAAACCACCTTC+AGG - chr2_1:64764443-64764462 Msa0217810:intron 45.0%
TTACACGATCGCTCTGACAT+AGG - chr2_1:64764554-64764573 Msa0217810:CDS 45.0%
GGTAAACCTGTTCTGCTTTC+AGG - chr2_1:64764659-64764678 Msa0217810:CDS 45.0%
ATAGGACCTGAAAGCAGAAC+AGG + chr2_1:64764668-64764687 None:intergenic 45.0%
!! AATGTAGCTTTTGGTGGCTC+AGG + chr2_1:64764695-64764714 None:intergenic 45.0%
GCCACCAAAAGCTACATTAG+AGG - chr2_1:64764697-64764716 Msa0217810:CDS 45.0%
!! AGGATTCAAACCTGGTTCTG+TGG - chr2_1:64764742-64764761 Msa0217810:CDS 45.0%
GCACAATAAACCACAGAACC+AGG + chr2_1:64764755-64764774 None:intergenic 45.0%
! GGCTTAAGTGCTGCAAGAAA+TGG + chr2_1:64764851-64764870 None:intergenic 45.0%
TGGAGCTGCTTCTATAACTG+AGG - chr2_1:64765016-64765035 Msa0217810:CDS 45.0%
GGAGCTGCTTCTATAACTGA+GGG - chr2_1:64765017-64765036 Msa0217810:CDS 45.0%
ATATGGTCAGGATCTACACG+TGG + chr2_1:64765074-64765093 None:intergenic 45.0%
ATTGCTATGTGCAAAGGAGG+AGG + chr2_1:64763972-64763991 None:intergenic 45.0%
TTGTTAGAGAGGCGGAGAAA+TGG + chr2_1:64764026-64764045 None:intergenic 45.0%
CCATGGATGTAGCAATGAGA+GGG + chr2_1:64764223-64764242 None:intergenic 45.0%
TCCATGGATGTAGCAATGAG+AGG + chr2_1:64764224-64764243 None:intergenic 45.0%
ATCCATGGACCAAACTGAGA+AGG - chr2_1:64764235-64764254 Msa0217800:CDS 45.0%
ATCCTTCTCAGTTTGGTCCA+TGG + chr2_1:64764240-64764259 None:intergenic 45.0%
GATCTCATGAAACCACCTTC+AGG - chr2_1:64764443-64764462 Msa0217810:intron 45.0%
TTACACGATCGCTCTGACAT+AGG - chr2_1:64764554-64764573 Msa0217810:CDS 45.0%
GGTAAACCTGTTCTGCTTTC+AGG - chr2_1:64764659-64764678 Msa0217810:CDS 45.0%
ATAGGACCTGAAAGCAGAAC+AGG + chr2_1:64764668-64764687 None:intergenic 45.0%
!! AATGTAGCTTTTGGTGGCTC+AGG + chr2_1:64764695-64764714 None:intergenic 45.0%
GCCACCAAAAGCTACATTAG+AGG - chr2_1:64764697-64764716 Msa0217810:CDS 45.0%
!! AGGATTCAAACCTGGTTCTG+TGG - chr2_1:64764742-64764761 Msa0217810:CDS 45.0%
GCACAATAAACCACAGAACC+AGG + chr2_1:64764755-64764774 None:intergenic 45.0%
! GGCTTAAGTGCTGCAAGAAA+TGG + chr2_1:64764851-64764870 None:intergenic 45.0%
TGGAGCTGCTTCTATAACTG+AGG - chr2_1:64765016-64765035 Msa0217810:CDS 45.0%
GGAGCTGCTTCTATAACTGA+GGG - chr2_1:64765017-64765036 Msa0217810:CDS 45.0%
ATATGGTCAGGATCTACACG+TGG + chr2_1:64765074-64765093 None:intergenic 45.0%
AAGTGCCCCATAGCAAACCA+TGG + chr2_1:64763999-64764018 None:intergenic 50.0%
CCCTCTCATTGCTACATCCA+TGG - chr2_1:64764220-64764239 Msa0217800:CDS 50.0%
GATGAATCAGGGAACCCTGA+AGG + chr2_1:64764461-64764480 None:intergenic 50.0%
GCAGCACTTAAGCCACCTAT+TGG - chr2_1:64764857-64764876 Msa0217810:CDS 50.0%
AAGTGCCCCATAGCAAACCA+TGG + chr2_1:64763999-64764018 None:intergenic 50.0%
CCCTCTCATTGCTACATCCA+TGG - chr2_1:64764220-64764239 Msa0217800:CDS 50.0%
GATGAATCAGGGAACCCTGA+AGG + chr2_1:64764461-64764480 None:intergenic 50.0%
GCAGCACTTAAGCCACCTAT+TGG - chr2_1:64764857-64764876 Msa0217810:CDS 50.0%
GAATCAGGGAACCCTGAAGG+TGG + chr2_1:64764458-64764477 None:intergenic 55.0%
GAATCAGGGAACCCTGAAGG+TGG + chr2_1:64764458-64764477 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 64763960 64765337 64763960 ID=Msa0217810;Name=Msa0217810
chr2_1 mRNA 64763960 64765337 64763960 ID=Msa0217810-mRNA-1;Parent=Msa0217810;Name=Msa0217810-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|1|1|2|0|432
chr2_1 exon 64764534 64765337 64764534 ID=Msa0217810-mRNA-1:exon:18000;Parent=Msa0217810-mRNA-1
chr2_1 exon 64763960 64764454 64763960 ID=Msa0217810-mRNA-1:exon:17999;Parent=Msa0217810-mRNA-1
chr2_1 CDS 64764534 64765337 64764534 ID=Msa0217810-mRNA-1:cds;Parent=Msa0217810-mRNA-1
chr2_1 CDS 64763960 64764454 64763960 ID=Msa0217810-mRNA-1:cds;Parent=Msa0217810-mRNA-1
Gene Sequence

>Msa0217810

ATGGATTCTCCTCCTCCTTTGCACATAGCAATGTTTCCATGGTTTGCTATGGGGCACTTAACTCCATTTCTCCGCCTCTCTAACAAATTAGCAATAAGAGGTCACAAAATCTCATTCTTCATCCCTGAAAAAACACTCAACAAGTTACAATATCTCAATCTTCATCCAAATCTTATTACCTTTGTTCCTATCACAGTTCCTCATGTTAATGGTCTTCCTCATGATGCTGAAACTACTTCAGATGTACCCTCTTCTTTATTCCCTCTCATTGCTACATCCATGGACCAAACTGAGAAGGATATTGAACTTCTTCTAAGGGAACTAAAGCCACAAATAGTTTTCTTTGATTTTCAATATTGGCTGCCAAACTTGACTCAAAAACTTGGTATCAAAAGTCTTCAATACTTGATATGCAATCCAATATCATCAGCTTACCTTGGAAATATACCAAGACATAGTCAAGGAAGATTTTTAACTGAATTTGATCTCATGAAACCACCTTCAGGGTTCCCTGATTCATCCATCAAGTTTTATTCGCATGAAATTCGTGCCCTAGTTTCCCACAGAAAACTAGAATTTGGAAGTGGTGTTTTATTACACGATCGCTCTGACATAGGCACAAAGTTTTCAGATGCAGTTGCTTTCAAAGGATGCAGTGAAATTGATGGTTTATATGCTGATTATATTCAAACTGTTTTTGGTAAACCTGTTCTGCTTTCAGGTCCTATATTACCTGAGCCACCAAAAGCTACATTAGAGGAAAAATGGTTAAAATGGCTTAAAGGATTCAAACCTGGTTCTGTGGTTTTCCATTTCTTGCAGCACTTAAGCCACCTATTGGATTTCAGACTATTGAAGAAGCTTTACCTGAAGGGTTTTAATGAGAGAGTTAAAGGAAAAGGAATTGTATATGGAAGTTGGATTCAACAACAGTTGATTCTTGAACACCCTTCTGTTGGATGTTTCATAACACATTGTGGAGCTGCTTCTATAACTGAGGGACTTGTTAACACGTGTCTGTTGGTGTTGTTGCCACGTGTAGATCCTGACCATATCATGAATGCAAGAATGATGAGTGAAAAGATGAAGGTTGGTGTAGAAGTTGAGAAAGGTGATGAAGATGGATTGTTTACAAAAGAAAATGTGTGCAAAGCTGTGAAGATTGTGATGGATGATGAGAATGAAGTTGGAAGAGAAGTGAGAGCTAATCATGCTAAACTGAGAAACTTTTTATTGAGAAGCAATTTAGAATCTTCATGTGTTGATAATTTCTGTCAAAAACTCAACGATTTGCTCTAG
Protein sequence

>Msa0217810

MDSPPPLHIAMFPWFAMGHLTPFLRLSNKLAIRGHKISFFIPEKTLNKLQYLNLHPNLITFVPITVPHVNGLPHDAETTSDVPSSLFPLIATSMDQTEKDIELLLRELKPQIVFFDFQYWLPNLTQKLGIKSLQYLICNPISSAYLGNIPRHSQGRFLTEFDLMKPPSGFPDSSIKFYSHEIRALVSHRKLEFGSGVLLHDRSDIGTKFSDAVAFKGCSEIDGLYADYIQTVFGKPVLLSGPILPEPPKATLEEKWLKWLKGFKPGSVVFHFLQHLSHLLDFRLLKKLYLKGFNERVKGKGIVYGSWIQQQLILEHPSVGCFITHCGAASITEGLVNTCLLVLLPRVDPDHIMNARMMSEKMKVGVEVEKGDEDGLFTKENVCKAVKIVMDDENEVGREVRANHAKLRNFLLRSNLESSCVDNFCQKLNDLL*