AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0641400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641400 MtrunA17_Chr4g0026061 98.561 139 1 1 1 139 1 138 9.34e-97 274
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641400 AT1G08380.1 73.427 143 29 4 1 137 1 140 1.63e-66 198

Find 63 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCAATGTGATTGGATT+TGG 0.225162 4_3:-41827768 Msa0641400:CDS
CTGTTCATCTCTCTCACTTT+TGG 0.231594 4_3:-41826181 Msa0641400:CDS
TCCTTCCTTTGAAACCAATT+TGG 0.248618 4_3:+41826158 None:intergenic
TAGAAAACAACAATAATAAT+TGG 0.259562 4_3:-41828442 Msa0641400:five_prime_UTR
CTGCTCTTACTTCACCCTTC+TGG 0.272395 4_3:-41827635 Msa0641400:intron
TGAAACCTCAAGTGATTGTT+AGG 0.291393 4_3:-41828189 Msa0641400:CDS
TTAGTTGTAATCTATGATTT+TGG 0.293419 4_3:+41828356 None:intergenic
ATCATAGATTACAACTAAAA+TGG 0.305980 4_3:-41828351 Msa0641400:exon
AAATAAAATAAGATTGGGTT+TGG 0.314112 4_3:+41828485 None:intergenic
ATGGCTGATCTGTTGGCACC+TGG 0.325103 4_3:-41826206 Msa0641400:CDS
AGGAGGGATTTCAATGTGAT+TGG 0.334086 4_3:-41827774 Msa0641400:CDS
GTGATTGGATTTGGGTTGAT+AGG 0.341850 4_3:-41827759 Msa0641400:CDS
CCTTCCAAATAAAATAAGAT+TGG 0.349799 4_3:+41828479 None:intergenic
ATTTCAATGTGATTGGATTT+GGG 0.350561 4_3:-41827767 Msa0641400:CDS
GAAGTAAGAGCAGGAGGAGT+AGG 0.358016 4_3:+41827645 None:intergenic
CAAGGCTGAAAGTAACATAA+AGG 0.369414 4_3:+41826015 None:intergenic
TTGGATTTGGGTTGATAGGT+TGG 0.379649 4_3:-41827755 Msa0641400:CDS
CTTCCAAATAAAATAAGATT+GGG 0.407788 4_3:+41828480 None:intergenic
CCCTCCTCAACCAATCCCTT+TGG 0.417140 4_3:+41827790 None:intergenic
TCTATAGCTGGTATGCTTGA+TGG 0.430936 4_3:+41827726 None:intergenic
TCTATCGTACTGGGAAAGAT+TGG 0.433759 4_3:-41825935 Msa0641400:three_prime_UTR
AAGTAAGAGCAGGAGGAGTA+GGG 0.437703 4_3:+41827646 None:intergenic
CAAGCTATGGCACTTGGAAA+TGG 0.452932 4_3:-41828154 Msa0641400:CDS
TGGCTGATCTGTTGGCACCT+GGG 0.454791 4_3:-41826205 Msa0641400:CDS
GCCAAATTGGTTTCAAAGGA+AGG 0.457172 4_3:-41826159 Msa0641400:CDS
ATTTGGGTTGATAGGTTGGT+TGG 0.470446 4_3:-41827751 Msa0641400:CDS
ACAACCTTTCCAACCGTCCT+AGG 0.481448 4_3:-41828323 Msa0641400:CDS
GGCTGATCTGTTGGCACCTG+GGG 0.482909 4_3:-41826204 Msa0641400:CDS
TCAAGCATACCAGCTATAGA+TGG 0.485882 4_3:-41827723 Msa0641400:CDS
TTTGGCCAAATTGGTTTCAA+AGG 0.491678 4_3:-41826163 Msa0641400:CDS
AGTGCCATAGCTTGTTTCAA+AGG 0.494595 4_3:+41828163 None:intergenic
AAGGCTGAAAGTAACATAAA+GGG 0.495180 4_3:+41826016 None:intergenic
TTGAAACAAGCTATGGCACT+TGG 0.496494 4_3:-41828160 Msa0641400:CDS
ACTCATGGTAGTAGATTACA+AGG 0.507549 4_3:+41825997 None:intergenic
GCTTCCAAAGGGATTGGTTG+AGG 0.511105 4_3:-41827794 Msa0641400:CDS
CTTTCCCAGTACGATAGAAA+AGG 0.511256 4_3:+41825940 None:intergenic
CCAAAGGGATTGGTTGAGGA+GGG 0.517034 4_3:-41827790 Msa0641400:CDS
GGTGCATCACGTCTCACCTC+AGG 0.521677 4_3:-41828293 Msa0641400:intron
GCAGGTTATGGCTGATCTGT+TGG 0.521700 4_3:-41826213 Msa0641400:intron
ATAGTAGCTTCCAAAGGGAT+TGG 0.522860 4_3:-41827800 Msa0641400:intron
TGAGAGAGATGAACAGCCCC+AGG 0.530883 4_3:+41826188 None:intergenic
CCAACCGTCCTAGGAATGGC+TGG 0.539875 4_3:-41828314 Msa0641400:CDS
CCAGCCATTCCTAGGACGGT+TGG 0.541005 4_3:+41828314 None:intergenic
GTGATGCACCAGCCATTCCT+AGG 0.542585 4_3:+41828306 None:intergenic
ATAGATGGTAAAAGTCTGAC+TGG 0.543316 4_3:-41827708 Msa0641400:CDS
GCTATGGCACTTGGAAATGG+TGG 0.545551 4_3:-41828151 Msa0641400:CDS
CAGAAGGGTGAAGTAAGAGC+AGG 0.557629 4_3:+41827636 None:intergenic
GAATCCTTTGAAACAAGCTA+TGG 0.562317 4_3:-41828167 Msa0641400:CDS
CTTTCCAACCGTCCTAGGAA+TGG 0.566203 4_3:-41828318 Msa0641400:CDS
GGTGTATAGTAGCTTCCAAA+GGG 0.571319 4_3:-41827805 Msa0641400:intron
CATTCCTAGGACGGTTGGAA+AGG 0.571757 4_3:+41828319 None:intergenic
TCCAAAGGGATTGGTTGAGG+AGG 0.581265 4_3:-41827791 Msa0641400:CDS
TGGTGTATAGTAGCTTCCAA+AGG 0.596452 4_3:-41827806 Msa0641400:intron
CTATGGCACTTGGAAATGGT+GGG 0.605091 4_3:-41828150 Msa0641400:CDS
AAGGGTGAAGTAAGAGCAGG+AGG 0.608022 4_3:+41827639 None:intergenic
TGCACCAGCCATTCCTAGGA+CGG 0.612860 4_3:+41828310 None:intergenic
GGATTCCTAACAATCACTTG+AGG 0.619263 4_3:+41828184 None:intergenic
CAGATATGTGTGCAAAGTAG+TGG 0.627867 4_3:+41828405 None:intergenic
GAAATGGTGGGAGAGTTACA+TGG 0.656018 4_3:-41828138 Msa0641400:intron
TATTACTATGAATTAAACTG+AGG 0.658988 4_3:-41826093 Msa0641400:three_prime_UTR
TGGTTTCAAAGGAAGGACTG+AGG 0.666404 4_3:-41826152 Msa0641400:CDS
ATGAAAATGACTAACCAGAA+GGG 0.671062 4_3:+41827621 None:intergenic
ATATGTGTGCAAAGTAGTGG+TGG 0.698145 4_3:+41828408 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCATTTTATTTATTTAAGT+CGG - chr4_3:41826762-41826781 Msa0641400:intron 10.0%
!! TGATCAAATATATAAATTAT+TGG - chr4_3:41826850-41826869 Msa0641400:intron 10.0%
!!! TTTTTTTTATATTTTTATGG+TGG + chr4_3:41827366-41827385 None:intergenic 10.0%
!!! ATTTTTTTTATTTATAACCT+CGG + chr4_3:41827812-41827831 None:intergenic 10.0%
!!! TTGCATTTAAATATATTTTT+TGG - chr4_3:41828070-41828089 Msa0641400:intron 10.0%
!!! TTTTAATTCATAATAACTTA+TGG - chr4_3:41828281-41828300 Msa0641400:intron 10.0%
!! TAGAAAACAACAATAATAAT+TGG - chr4_3:41825897-41825916 Msa0641400:three_prime_UTR 15.0%
!!! TTTAATTGTAATTTGTTTGT+AGG - chr4_3:41826122-41826141 Msa0641400:exon 15.0%
!!! GGTAATTTTTATTATAAGAT+TGG - chr4_3:41826222-41826241 Msa0641400:intron 15.0%
!!! TTATAAGATTGGTTTTTATA+TGG - chr4_3:41826233-41826252 Msa0641400:intron 15.0%
!!! TCCATATGAATATTTATTTT+CGG - chr4_3:41826279-41826298 Msa0641400:intron 15.0%
!!! TATGATTATTTTCATTAACT+TGG + chr4_3:41827043-41827062 None:intergenic 15.0%
!!! ATTTTTTTTCTAACAATCTA+TGG + chr4_3:41827509-41827528 None:intergenic 15.0%
!! AATTTAAATCCATAAAGTTT+AGG - chr4_3:41827526-41827545 Msa0641400:intron 15.0%
!! AAATAAAGAAAGAAAAGAAA+AGG - chr4_3:41827763-41827782 Msa0641400:CDS 15.0%
!! AAATAAAGAAAGAAAAGAAA+AGG - chr4_3:41827763-41827782 Msa0641400:CDS 15.0%
!!! TTTTTTCTTTTTTTTACTCA+TGG + chr4_3:41828360-41828379 None:intergenic 15.0%
!! AAATAAAATAAGATTGGGTT+TGG + chr4_3:41825857-41825876 None:intergenic 20.0%
!!! AAACCCAATCTTATTTTATT+TGG - chr4_3:41825856-41825875 Msa0641400:three_prime_UTR 20.0%
!! CTTCCAAATAAAATAAGATT+GGG + chr4_3:41825862-41825881 None:intergenic 20.0%
!!! TTAGTTGTAATCTATGATTT+TGG + chr4_3:41825986-41826005 None:intergenic 20.0%
!! ATCATAGATTACAACTAAAA+TGG - chr4_3:41825988-41826007 Msa0641400:three_prime_UTR 20.0%
!!! CATTATTTTGTGAATTGTTA+TGG - chr4_3:41826496-41826515 Msa0641400:intron 20.0%
!!! TAAATGGGGTATTAAAAAAT+TGG + chr4_3:41826979-41826998 None:intergenic 20.0%
!! AAAGTAATGAAAATATGAAG+TGG - chr4_3:41827120-41827139 Msa0641400:intron 20.0%
!!! TTTTATATTTTTATGGTGGT+CGG + chr4_3:41827362-41827381 None:intergenic 20.0%
!! AAATAAATTGTATCCATTGT+TGG + chr4_3:41827459-41827478 None:intergenic 20.0%
!!! ACAATGGATACAATTTATTT+TGG - chr4_3:41827459-41827478 Msa0641400:intron 20.0%
!! TGCTAATGAGAAATTATAAA+TGG - chr4_3:41827628-41827647 Msa0641400:intron 20.0%
!! GAACTTTAACAAAAAAAATC+TGG - chr4_3:41827654-41827673 Msa0641400:CDS 20.0%
!! TATTACTATGAATTAAACTG+AGG - chr4_3:41828246-41828265 Msa0641400:intron 20.0%
!! AAAAAAAATTGTAGAACACT+TGG - chr4_3:41828374-41828393 Msa0641400:five_prime_UTR 20.0%
!! AAATTGCAAAACAAAAAGTT+GGG + chr4_3:41828492-41828511 None:intergenic 20.0%
!! AAAATTGCAAAACAAAAAGT+TGG + chr4_3:41828493-41828512 None:intergenic 20.0%
! CCTTCCAAATAAAATAAGAT+TGG + chr4_3:41825863-41825882 None:intergenic 25.0%
!!! CCAATCTTATTTTATTTGGA+AGG - chr4_3:41825860-41825879 Msa0641400:three_prime_UTR 25.0%
! GCCGAAAATAAATATTCATA+TGG + chr4_3:41826283-41826302 None:intergenic 25.0%
! TCATATTTCACGTGATTAAA+CGG + chr4_3:41826385-41826404 None:intergenic 25.0%
! ATTTCAATGTGATTGGATTT+GGG - chr4_3:41826572-41826591 Msa0641400:intron 25.0%
! ATATTTGATCATTCCTTACA+TGG + chr4_3:41826841-41826860 None:intergenic 25.0%
! TATAAATTATTGGCATCTAG+AGG - chr4_3:41826860-41826879 Msa0641400:intron 25.0%
! TCTAACAGACAATTAAAACA+AGG - chr4_3:41826915-41826934 Msa0641400:intron 25.0%
! AAAGAACTTGTGACTTAAAT+GGG + chr4_3:41826994-41827013 None:intergenic 25.0%
! TAAAGAACTTGTGACTTAAA+TGG + chr4_3:41826995-41827014 None:intergenic 25.0%
! TAATGAAAATATGAAGTGGA+AGG - chr4_3:41827124-41827143 Msa0641400:intron 25.0%
!!! TTTATATTTTTATGGTGGTC+GGG + chr4_3:41827361-41827380 None:intergenic 25.0%
!! GTAAAATTTTACACCAACAA+TGG - chr4_3:41827443-41827462 Msa0641400:intron 25.0%
! TTATTAGCACCTAAACTTTA+TGG + chr4_3:41827538-41827557 None:intergenic 25.0%
!! TTCAAAAGCAGTTTTTGTTA+AGG + chr4_3:41827729-41827748 None:intergenic 25.0%
!!! TTTTTTATTTATAACCTCGG+TGG + chr4_3:41827809-41827828 None:intergenic 25.0%
!! TTCAAAAGCAGTTTTTGTTA+AGG + chr4_3:41827729-41827748 None:intergenic 25.0%
! AATTGCAAAACAAAAAGTTG+GGG + chr4_3:41828491-41828510 None:intergenic 25.0%
! GTTGTAATCTATGATTTTGG+TGG + chr4_3:41825983-41826002 None:intergenic 30.0%
!!! TTCGGCTAGTTTTATAGTAT+AGG - chr4_3:41826297-41826316 Msa0641400:intron 30.0%
! TGAATTGTTATGGCATGTTT+TGG - chr4_3:41826506-41826525 Msa0641400:intron 30.0%
GATTTCAATGTGATTGGATT+TGG - chr4_3:41826571-41826590 Msa0641400:intron 30.0%
ATGAAAATGACTAACCAGAA+GGG + chr4_3:41826721-41826740 None:intergenic 30.0%
! TGGGGTATTAAAAAATTGGA+AGG + chr4_3:41826975-41826994 None:intergenic 30.0%
AAGAACTTGTGACTTAAATG+GGG + chr4_3:41826993-41827012 None:intergenic 30.0%
!! TTATATTTTTATGGTGGTCG+GGG + chr4_3:41827360-41827379 None:intergenic 30.0%
GTCGGTAATTTCTAACAAAA+CGG + chr4_3:41828012-41828031 None:intergenic 30.0%
!! GTTTTGTTAGAAATTACCGA+CGG - chr4_3:41828011-41828030 Msa0641400:intron 30.0%
TCAGTTTATATTACATCCGT+CGG + chr4_3:41828030-41828049 None:intergenic 30.0%
AAGGCTGAAAGTAACATAAA+GGG + chr4_3:41828326-41828345 None:intergenic 30.0%
GTTAATGATCATGATACCTG+AGG + chr4_3:41826065-41826084 None:intergenic 35.0%
TGAAACCTCAAGTGATTGTT+AGG - chr4_3:41826150-41826169 Msa0641400:CDS 35.0%
!! GAATCCTTTGAAACAAGCTA+TGG - chr4_3:41826172-41826191 Msa0641400:CDS 35.0%
!!! TTATGGCATGTTTTGGCATA+TGG - chr4_3:41826513-41826532 Msa0641400:intron 35.0%
! AGACTTTTACCATCTATAGC+TGG + chr4_3:41826628-41826647 None:intergenic 35.0%
ATAGATGGTAAAAGTCTGAC+TGG - chr4_3:41826631-41826650 Msa0641400:intron 35.0%
!! GGACTTTTCTTTGATAGCAT+TGG - chr4_3:41826652-41826671 Msa0641400:intron 35.0%
GATGAAAATGACTAACCAGA+AGG + chr4_3:41826722-41826741 None:intergenic 35.0%
ATCAATCCTACCGTCTAAAT+CGG - chr4_3:41826808-41826827 Msa0641400:intron 35.0%
!!! TGGTTTTGTTCCGATTTAGA+CGG + chr4_3:41826821-41826840 None:intergenic 35.0%
AATCGGAACAAAACCATGTA+AGG - chr4_3:41826825-41826844 Msa0641400:intron 35.0%
! AAGGAATCAGTTAGAGGTAT+TGG - chr4_3:41827143-41827162 Msa0641400:intron 35.0%
!! AGGAATCAGTTAGAGGTATT+GGG - chr4_3:41827144-41827163 Msa0641400:intron 35.0%
TTTCTAACAAAACGGTTCCA+TGG + chr4_3:41828004-41828023 None:intergenic 35.0%
TCAAACATGATGAATTGAGC+AGG - chr4_3:41828108-41828127 Msa0641400:intron 35.0%
ATGATGAATTGAGCAGGTTA+TGG - chr4_3:41828114-41828133 Msa0641400:intron 35.0%
! TTTGGCCAAATTGGTTTCAA+AGG - chr4_3:41828176-41828195 Msa0641400:CDS 35.0%
!! TCCTTCCTTTGAAACCAATT+TGG + chr4_3:41828184-41828203 None:intergenic 35.0%
CAAGGCTGAAAGTAACATAA+AGG + chr4_3:41828327-41828346 None:intergenic 35.0%
ACTCATGGTAGTAGATTACA+AGG + chr4_3:41828345-41828364 None:intergenic 35.0%
! CAAAGTAGTGGTGGTTTTTG+TGG + chr4_3:41825925-41825944 None:intergenic 40.0%
ATATGTGTGCAAAGTAGTGG+TGG + chr4_3:41825934-41825953 None:intergenic 40.0%
CAGATATGTGTGCAAAGTAG+TGG + chr4_3:41825937-41825956 None:intergenic 40.0%
GGATTCCTAACAATCACTTG+AGG + chr4_3:41826158-41826177 None:intergenic 40.0%
!! AGTGCCATAGCTTGTTTCAA+AGG + chr4_3:41826179-41826198 None:intergenic 40.0%
TTGAAACAAGCTATGGCACT+TGG - chr4_3:41826179-41826198 Msa0641400:CDS 40.0%
TGGTGTATAGTAGCTTCCAA+AGG - chr4_3:41826533-41826552 Msa0641400:intron 40.0%
GGTGTATAGTAGCTTCCAAA+GGG - chr4_3:41826534-41826553 Msa0641400:intron 40.0%
ATAGTAGCTTCCAAAGGGAT+TGG - chr4_3:41826539-41826558 Msa0641400:intron 40.0%
AGGAGGGATTTCAATGTGAT+TGG - chr4_3:41826565-41826584 Msa0641400:intron 40.0%
!! GTGATTGGATTTGGGTTGAT+AGG - chr4_3:41826580-41826599 Msa0641400:intron 40.0%
!! TTGGATTTGGGTTGATAGGT+TGG - chr4_3:41826584-41826603 Msa0641400:intron 40.0%
!! ATTTGGGTTGATAGGTTGGT+TGG - chr4_3:41826588-41826607 Msa0641400:intron 40.0%
TCTATAGCTGGTATGCTTGA+TGG + chr4_3:41826616-41826635 None:intergenic 40.0%
TCAAGCATACCAGCTATAGA+TGG - chr4_3:41826616-41826635 Msa0641400:intron 40.0%
TTTGTTCCGATTTAGACGGT+AGG + chr4_3:41826817-41826836 None:intergenic 40.0%
AAGTGGAAGGAATCAGTTAG+AGG - chr4_3:41827137-41827156 Msa0641400:intron 40.0%
GTGAGCTTGTCTTGGTAAAA+AGG - chr4_3:41827171-41827190 Msa0641400:intron 40.0%
! TGAGCTTATCTCAGTTGGTA+GGG - chr4_3:41827299-41827318 Msa0641400:intron 40.0%
! CTGTTCATCTCTCTCACTTT+TGG - chr4_3:41828158-41828177 Msa0641400:CDS 40.0%
!! TCTCTCACTTTTGGCCAAAT+TGG - chr4_3:41828167-41828186 Msa0641400:CDS 40.0%
! GCCAAATTGGTTTCAAAGGA+AGG - chr4_3:41828180-41828199 Msa0641400:CDS 40.0%
CTTTCCCAGTACGATAGAAA+AGG + chr4_3:41828402-41828421 None:intergenic 40.0%
TCTATCGTACTGGGAAAGAT+TGG - chr4_3:41828404-41828423 Msa0641400:five_prime_UTR 40.0%
CAAGCTATGGCACTTGGAAA+TGG - chr4_3:41826185-41826204 Msa0641400:CDS 45.0%
CTATGGCACTTGGAAATGGT+GGG - chr4_3:41826189-41826208 Msa0641400:CDS 45.0%
! GAAATGGTGGGAGAGTTACA+TGG - chr4_3:41826201-41826220 Msa0641400:CDS 45.0%
AAGTAAGAGCAGGAGGAGTA+GGG + chr4_3:41826696-41826715 None:intergenic 45.0%
GTGAGCTTATCTCAGTTGGT+AGG - chr4_3:41827298-41827317 Msa0641400:intron 45.0%
AAAGGTTCCACCGAGAGAAA+AGG - chr4_3:41827781-41827800 Msa0641400:CDS 45.0%
AAAGGTTCCACCGAGAGAAA+AGG - chr4_3:41827781-41827800 Msa0641400:CDS 45.0%
AGTAACCCGAGTTCAAGTCT+CGG + chr4_3:41827950-41827969 None:intergenic 45.0%
AAAACGGTTCCATGGTCTAG+CGG + chr4_3:41827996-41828015 None:intergenic 45.0%
TGGTTTCAAAGGAAGGACTG+AGG - chr4_3:41828187-41828206 Msa0641400:CDS 45.0%
! TGGCACCTTTTCTATCGTAC+TGG - chr4_3:41828394-41828413 Msa0641400:five_prime_UTR 45.0%
! GGCACCTTTTCTATCGTACT+GGG - chr4_3:41828395-41828414 Msa0641400:five_prime_UTR 45.0%
!!! AGTTTTTTTTTATATTTTTA+TGG + chr4_3:41827369-41827388 None:intergenic 5.0%
!!! TAAACATTTTTTTTTATTAA+TGG - chr4_3:41827582-41827601 Msa0641400:intron 5.0%
!!! AAACATTTTTTTTTATTAAT+GGG - chr4_3:41827583-41827602 Msa0641400:intron 5.0%
ACAACCTTTCCAACCGTCCT+AGG - chr4_3:41826016-41826035 Msa0641400:three_prime_UTR 50.0%
CATTCCTAGGACGGTTGGAA+AGG + chr4_3:41826023-41826042 None:intergenic 50.0%
CTTTCCAACCGTCCTAGGAA+TGG - chr4_3:41826021-41826040 Msa0641400:three_prime_UTR 50.0%
GCTATGGCACTTGGAAATGG+TGG - chr4_3:41826188-41826207 Msa0641400:CDS 50.0%
!! GCTTCCAAAGGGATTGGTTG+AGG - chr4_3:41826545-41826564 Msa0641400:intron 50.0%
!! TCCAAAGGGATTGGTTGAGG+AGG - chr4_3:41826548-41826567 Msa0641400:intron 50.0%
!! CCAAAGGGATTGGTTGAGGA+GGG - chr4_3:41826549-41826568 Msa0641400:intron 50.0%
GAAGTAAGAGCAGGAGGAGT+AGG + chr4_3:41826697-41826716 None:intergenic 50.0%
AAGGGTGAAGTAAGAGCAGG+AGG + chr4_3:41826703-41826722 None:intergenic 50.0%
CAGAAGGGTGAAGTAAGAGC+AGG + chr4_3:41826706-41826725 None:intergenic 50.0%
CTGCTCTTACTTCACCCTTC+TGG - chr4_3:41826704-41826723 Msa0641400:intron 50.0%
! TGGGTCTTGTGAGCTTGTCT+TGG - chr4_3:41827163-41827182 Msa0641400:intron 50.0%
CCAACTGAGATAAGCTCACG+AGG + chr4_3:41827297-41827316 None:intergenic 50.0%
CCTCGTGAGCTTATCTCAGT+TGG - chr4_3:41827294-41827313 Msa0641400:intron 50.0%
! CTCGGTGGAACCTTTTCTCT+CGG + chr4_3:41827794-41827813 None:intergenic 50.0%
! CTCGGTGGAACCTTTTCTCT+CGG + chr4_3:41827794-41827813 None:intergenic 50.0%
GTTCCACCGAGACTTGAACT+CGG - chr4_3:41827941-41827960 Msa0641400:intron 50.0%
TTCCACCGAGACTTGAACTC+GGG - chr4_3:41827942-41827961 Msa0641400:intron 50.0%
GAGACTTGAACTCGGGTTAC+TGG - chr4_3:41827949-41827968 Msa0641400:intron 50.0%
TGGTCTAGCGGTTAGGACAT+TGG + chr4_3:41827984-41828003 None:intergenic 50.0%
ATGTCCTAACCGCTAGACCA+TGG - chr4_3:41827984-41828003 Msa0641400:intron 50.0%
GCAGGTTATGGCTGATCTGT+TGG - chr4_3:41828126-41828145 Msa0641400:intron 50.0%
TGCACCAGCCATTCCTAGGA+CGG + chr4_3:41826032-41826051 None:intergenic 55.0%
GTGATGCACCAGCCATTCCT+AGG + chr4_3:41826036-41826055 None:intergenic 55.0%
CCCTCCTCAACCAATCCCTT+TGG + chr4_3:41826552-41826571 None:intergenic 55.0%
! GGTGGAACCTTTTCTCTCGG+TGG + chr4_3:41827791-41827810 None:intergenic 55.0%
CGAGAGAAAAGGTTCCACCG+AGG - chr4_3:41827792-41827811 Msa0641400:CDS 55.0%
! GGTGGAACCTTTTCTCTCGG+TGG + chr4_3:41827791-41827810 None:intergenic 55.0%
AACCCGAGTTCAAGTCTCGG+TGG + chr4_3:41827947-41827966 None:intergenic 55.0%
GGTTCCATGGTCTAGCGGTT+AGG + chr4_3:41827991-41828010 None:intergenic 55.0%
ATGGCTGATCTGTTGGCACC+TGG - chr4_3:41828133-41828152 Msa0641400:intron 55.0%
TGGCTGATCTGTTGGCACCT+GGG - chr4_3:41828134-41828153 Msa0641400:intron 55.0%
TGAGAGAGATGAACAGCCCC+AGG + chr4_3:41828154-41828173 None:intergenic 55.0%
CCAGCCATTCCTAGGACGGT+TGG + chr4_3:41826028-41826047 None:intergenic 60.0%
CCAACCGTCCTAGGAATGGC+TGG - chr4_3:41826025-41826044 Msa0641400:three_prime_UTR 60.0%
GGTGCATCACGTCTCACCTC+AGG - chr4_3:41826046-41826065 Msa0641400:three_prime_UTR 60.0%
GGCTGATCTGTTGGCACCTG+GGG - chr4_3:41828135-41828154 Msa0641400:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 41825847 41828514 41825847 ID=Msa0641400;Name=Msa0641400
chr4_3 mRNA 41825847 41828514 41825847 ID=Msa0641400-mRNA-1;Parent=Msa0641400;Name=Msa0641400-mRNA-1;_AED=0.03;_eAED=0.03;_QI=160|1|1|1|1|1|4|288|139
chr4_3 exon 41825847 41826231 41825847 ID=Msa0641400-mRNA-1:exon:9402;Parent=Msa0641400-mRNA-1
chr4_3 exon 41827636 41827818 41827636 ID=Msa0641400-mRNA-1:exon:9401;Parent=Msa0641400-mRNA-1
chr4_3 exon 41828139 41828217 41828139 ID=Msa0641400-mRNA-1:exon:9400;Parent=Msa0641400-mRNA-1
chr4_3 exon 41828294 41828514 41828294 ID=Msa0641400-mRNA-1:exon:9399;Parent=Msa0641400-mRNA-1
chr4_3 five_prime_UTR 41828355 41828514 41828355 ID=Msa0641400-mRNA-1:five_prime_utr;Parent=Msa0641400-mRNA-1
chr4_3 CDS 41828294 41828354 41828294 ID=Msa0641400-mRNA-1:cds;Parent=Msa0641400-mRNA-1
chr4_3 CDS 41828139 41828217 41828139 ID=Msa0641400-mRNA-1:cds;Parent=Msa0641400-mRNA-1
chr4_3 CDS 41827636 41827818 41827636 ID=Msa0641400-mRNA-1:cds;Parent=Msa0641400-mRNA-1
chr4_3 CDS 41826135 41826231 41826135 ID=Msa0641400-mRNA-1:cds;Parent=Msa0641400-mRNA-1
chr4_3 three_prime_UTR 41825847 41826134 41825847 ID=Msa0641400-mRNA-1:three_prime_utr;Parent=Msa0641400-mRNA-1
Gene Sequence

>Msa0641400

ATGGCAGCAACAACCTTTCCAACCGTCCTAGGAATGGCTGGTGCATCACGTCTCACCTCAGGATTTGTGAAACCTCAAGTGATTGTTAGGAATCCTTTGAAACAAGCTATGGCACTTGGAAATGGTGGGAGAGTTACATGTAGCTTCCAAAGGGATTGGTTGAGGAGGGATTTCAATGTGATTGGATTTGGGTTGATAGGTTGGTTGGCACCATCAAGCATACCAGCTATAGATGGTAAAAGTCTGACTGGACTTTTCTTTGATAGCATTGGCACTGAACTTGCTCACTTCCCTACTCCTCCTGCTCTTACTTCACCCTTCTGGTTATGGCTGATCTGTTGGCACCTGGGGCTGTTCATCTCTCTCACTTTTGGCCAAATTGGTTTCAAAGGAAGGACTGAGGATTACTTTCAGAAATGA

Protein sequence

>Msa0641400

MAATTFPTVLGMAGASRLTSGFVKPQVIVRNPLKQAMALGNGGRVTCSFQRDWLRRDFNVIGFGLIGWLAPSSIPAIDGKSLTGLFFDSIGTELAHFPTPPALTSPFWLWLICWHLGLFISLTFGQIGFKGRTEDYFQK*