Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218110 | XP_013464838.1 | 96.203 | 237 | 9 | 0 | 1 | 237 | 1 | 237 | 4.28e-166 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218110 | A0A072VBV9 | 96.203 | 237 | 9 | 0 | 1 | 237 | 1 | 237 | 2.04e-166 | 470 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0218110 | Msa0219370 | 0.993641 | 3.668942e-201 | -8.615850e-47 |
| Msa0218110 | Msa0258190 | 0.884810 | 1.394962e-71 | -8.615850e-47 |
| Msa0218110 | Msa0297010 | 0.847535 | 1.087238e-59 | -8.615850e-47 |
| Msa0218110 | Msa1160310 | 0.801958 | 7.043402e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218110 | MtrunA17_Chr2g0320271 | 96.203 | 237 | 9 | 0 | 1 | 237 | 1 | 237 | 3.93e-170 | 470 |
| Msa0218110 | MtrunA17_Chr4g0028161 | 63.889 | 252 | 74 | 8 | 1 | 237 | 1 | 250 | 7.34e-99 | 290 |
| Msa0218110 | MtrunA17_Chr1g0197151 | 49.724 | 181 | 72 | 5 | 7 | 185 | 6 | 169 | 1.06e-46 | 156 |
| Msa0218110 | MtrunA17_Chr2g0327801 | 32.243 | 214 | 90 | 10 | 14 | 190 | 9 | 204 | 2.61e-19 | 85.5 |
| Msa0218110 | MtrunA17_Chr4g0030841 | 31.667 | 240 | 105 | 8 | 14 | 207 | 8 | 234 | 4.21e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218110 | AT5G22930.1 | 54.118 | 255 | 79 | 6 | 1 | 237 | 1 | 235 | 1.33e-83 | 251 |
| Msa0218110 | AT3G44940.1 | 51.351 | 259 | 89 | 4 | 3 | 237 | 2 | 247 | 4.87e-73 | 225 |
| Msa0218110 | AT2G28140.1 | 52.479 | 242 | 70 | 11 | 4 | 237 | 5 | 209 | 1.92e-60 | 191 |
| Msa0218110 | AT2G28690.1 | 35.678 | 199 | 92 | 4 | 11 | 188 | 8 | 191 | 8.35e-27 | 105 |
| Msa0218110 | AT5G59760.1 | 32.420 | 219 | 120 | 7 | 10 | 217 | 8 | 209 | 2.78e-20 | 87.8 |
Find 54 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTAACTCTCTTCTTAAT+TGG | 0.059847 | 2_1:+65183322 | Msa0218110:CDS |
| GAAAATGAGTTAGGAGAATT+TGG | 0.137304 | 2_1:-65183191 | None:intergenic |
| CAACAAAATGCTCCACTTTC+TGG | 0.148671 | 2_1:+65183855 | Msa0218110:CDS |
| TGTTGTTGATTAGATCTTTA+AGG | 0.168436 | 2_1:-65183761 | None:intergenic |
| ACACAAACTTTGCTTGATTT+AGG | 0.216354 | 2_1:+65184730 | Msa0218110:CDS |
| CTTCAAACTCTTCTTCTTGC+AGG | 0.246829 | 2_1:+65184080 | Msa0218110:CDS |
| ATCATTGATTGATCAATAAC+TGG | 0.326107 | 2_1:-65183981 | None:intergenic |
| ATCTAACTCTCTTCTTAATT+GGG | 0.334531 | 2_1:+65183323 | Msa0218110:CDS |
| CTTTGGTACTTATTCTCATT+AGG | 0.335523 | 2_1:-65184284 | None:intergenic |
| AATAGACCACTACCTGAAAA+AGG | 0.345008 | 2_1:+65184020 | Msa0218110:CDS |
| CTCACTGTGGAAGAGTAAAT+AGG | 0.378934 | 2_1:+65184231 | Msa0218110:CDS |
| CATCTTCATAGTTGAAATCA+TGG | 0.391848 | 2_1:+65183293 | Msa0218110:exon |
| GAAATGTCAAAGACTTCTCT+TGG | 0.406188 | 2_1:+65183812 | Msa0218110:CDS |
| AAGGAAAAGGAAAATGAGTT+AGG | 0.406213 | 2_1:-65183200 | None:intergenic |
| GTGGAAGAGTAAATAGGAAA+AGG | 0.416196 | 2_1:+65184237 | Msa0218110:CDS |
| GATGAACAAATTACAAGAAA+AGG | 0.425567 | 2_1:+65183894 | Msa0218110:CDS |
| TTGCAGGACCACTTCCTCAA+TGG | 0.430493 | 2_1:+65184096 | Msa0218110:CDS |
| AAAATGAGTTAGGAGAATTT+GGG | 0.431400 | 2_1:-65183190 | None:intergenic |
| ATCACTTCTATACACAACTT+TGG | 0.432240 | 2_1:+65183674 | Msa0218110:CDS |
| GAGAGTGTGAGTGGGAGAGA+AGG | 0.436158 | 2_1:-65183219 | None:intergenic |
| GGGTGTTTCCATTGAGGAAG+TGG | 0.468433 | 2_1:-65184104 | None:intergenic |
| TGCAGTCAATGGAGGATTTG+AGG | 0.469227 | 2_1:+65183649 | Msa0218110:intron |
| TGGAAGAGTAAATAGGAAAA+GGG | 0.473459 | 2_1:+65184238 | Msa0218110:CDS |
| GTGAGTGGGAGAGAAGGAAA+AGG | 0.479057 | 2_1:-65183213 | None:intergenic |
| ATCAATGAAGTACAACCCTT+TGG | 0.485981 | 2_1:-65184301 | None:intergenic |
| GAATCTTGATGGAGGATCCT+AGG | 0.488623 | 2_1:-65184170 | None:intergenic |
| AGAAGAAGAGTTTGAAGAAG+AGG | 0.488907 | 2_1:-65184074 | None:intergenic |
| ATGCTTGAAACTCCAGAAAG+TGG | 0.498166 | 2_1:-65183867 | None:intergenic |
| AGGGAAAGAGAGAGTGTGAG+TGG | 0.499976 | 2_1:-65183228 | None:intergenic |
| AGATTATAAGTACCTTTCCT+TGG | 0.516487 | 2_1:-65183356 | None:intergenic |
| AGTTAGGAGAATTTGGGTGG+AGG | 0.521579 | 2_1:-65183184 | None:intergenic |
| AAAGGAATTGACTCAAACAA+TGG | 0.525642 | 2_1:+65183912 | Msa0218110:CDS |
| GGAGGAGGGTGTTTCCATTG+AGG | 0.528643 | 2_1:-65184110 | None:intergenic |
| TTGCAGGCAGTGATGAAAGC+TGG | 0.529664 | 2_1:+65184050 | Msa0218110:CDS |
| GGGAAAGAGAGAGTGTGAGT+GGG | 0.539104 | 2_1:-65183227 | None:intergenic |
| AAGGACTCAAGAGGTGGAGG+AGG | 0.539125 | 2_1:-65184125 | None:intergenic |
| GGATTTAACTCATTGAAAGA+AGG | 0.544860 | 2_1:+65184691 | Msa0218110:CDS |
| AGAATTTGGGTGGAGGTACA+AGG | 0.546342 | 2_1:-65183177 | None:intergenic |
| GGCTTACTTCTGCCAAGGAA+AGG | 0.551033 | 2_1:+65183344 | Msa0218110:CDS |
| AATTGGGCTTACTTCTGCCA+AGG | 0.555631 | 2_1:+65183339 | Msa0218110:CDS |
| TCAAAGGACTCAAGAGGTGG+AGG | 0.564067 | 2_1:-65184128 | None:intergenic |
| CTAATGAGAATAAGTACCAA+AGG | 0.565224 | 2_1:+65184285 | Msa0218110:CDS |
| TAATGAGAATAAGTACCAAA+GGG | 0.572125 | 2_1:+65184286 | Msa0218110:CDS |
| TTCCACCTGTCTTTATACCT+AGG | 0.584393 | 2_1:+65184153 | Msa0218110:CDS |
| ATGAGTTAGGAGAATTTGGG+TGG | 0.591697 | 2_1:-65183187 | None:intergenic |
| TATTGTTATGCAGTCAATGG+AGG | 0.594697 | 2_1:+65183641 | Msa0218110:intron |
| ATCTCAAAGGACTCAAGAGG+TGG | 0.602252 | 2_1:-65184131 | None:intergenic |
| AGCAAAAGTAGAATGTGAAG+AGG | 0.606333 | 2_1:-65184778 | None:intergenic |
| AAAGACAGGTGGAATCTCAA+AGG | 0.608828 | 2_1:-65184144 | None:intergenic |
| AGGATCCTAGGTATAAAGAC+AGG | 0.610448 | 2_1:-65184158 | None:intergenic |
| ATCCTAGGTATAAAGACAGG+TGG | 0.620187 | 2_1:-65184155 | None:intergenic |
| GGAATCTCAAAGGACTCAAG+AGG | 0.640526 | 2_1:-65184134 | None:intergenic |
| AGGACTCAAGAGGTGGAGGA+GGG | 0.640632 | 2_1:-65184124 | None:intergenic |
| ACTAATGCTAATTCTCACTG+TGG | 0.712843 | 2_1:+65184218 | Msa0218110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGCTTTTTTGAAAGAA+TGG | - | chr2_1:65183259-65183278 | None:intergenic | 20.0% |
| !! | TACTAAAAATTGAATCTTGA+TGG | - | chr2_1:65184184-65184203 | None:intergenic | 20.0% |
| !! | CCTATTATCTTGAAAATATT+TGG | - | chr2_1:65184493-65184512 | None:intergenic | 20.0% |
| !!! | CCAAATATTTTCAAGATAAT+AGG | + | chr2_1:65184490-65184509 | Msa0218110:intron | 20.0% |
| !!! | TCAAGATAATAGGATTTTTA+AGG | + | chr2_1:65184500-65184519 | Msa0218110:intron | 20.0% |
| !!! | TATTTGCTTTTTTGAAAGAA+TGG | - | chr2_1:65183259-65183278 | None:intergenic | 20.0% |
| !! | TACTAAAAATTGAATCTTGA+TGG | - | chr2_1:65184184-65184203 | None:intergenic | 20.0% |
| !! | CCTATTATCTTGAAAATATT+TGG | - | chr2_1:65184493-65184512 | None:intergenic | 20.0% |
| !!! | CCAAATATTTTCAAGATAAT+AGG | + | chr2_1:65184490-65184509 | Msa0218110:intron | 20.0% |
| !!! | TCAAGATAATAGGATTTTTA+AGG | + | chr2_1:65184500-65184519 | Msa0218110:intron | 20.0% |
| ! | AAAATGAGTTAGGAGAATTT+GGG | - | chr2_1:65183193-65183212 | None:intergenic | 25.0% |
| ! | AATCTAACTCTCTTCTTAAT+TGG | + | chr2_1:65183322-65183341 | Msa0218110:CDS | 25.0% |
| ! | ATCTAACTCTCTTCTTAATT+GGG | + | chr2_1:65183323-65183342 | Msa0218110:CDS | 25.0% |
| ! | TTATGAATGGAAATAGTTGA+AGG | - | chr2_1:65183386-65183405 | None:intergenic | 25.0% |
| ! | AGTAAAGTAAGCATTATGAA+TGG | - | chr2_1:65183399-65183418 | None:intergenic | 25.0% |
| !!! | TACTTTACTTTTATGAAGCA+CGG | + | chr2_1:65183410-65183429 | Msa0218110:intron | 25.0% |
| ! | ATCAGTGTAATTATATGTGT+CGG | + | chr2_1:65183511-65183530 | Msa0218110:intron | 25.0% |
| ! | TTCATAATCTATGCAATTTG+AGG | + | chr2_1:65183605-65183624 | Msa0218110:intron | 25.0% |
| !! | TGTTGTTGATTAGATCTTTA+AGG | - | chr2_1:65183764-65183783 | None:intergenic | 25.0% |
| ! | GATGAACAAATTACAAGAAA+AGG | + | chr2_1:65183894-65183913 | Msa0218110:CDS | 25.0% |
| !! | ATCATTGATTGATCAATAAC+TGG | - | chr2_1:65183984-65184003 | None:intergenic | 25.0% |
| ! | TAAAAATTGAATCTTGATGG+AGG | - | chr2_1:65184181-65184200 | None:intergenic | 25.0% |
| ! | TAATGAGAATAAGTACCAAA+GGG | + | chr2_1:65184286-65184305 | Msa0218110:CDS | 25.0% |
| !! | TTTGAAACTTAGCAAAATCA+CGG | + | chr2_1:65184434-65184453 | Msa0218110:intron | 25.0% |
| !!! | AATAGGATTTTTAAGGTTAG+TGG | + | chr2_1:65184507-65184526 | Msa0218110:intron | 25.0% |
| !!! | TATGTATAGCGTTTTTTGAT+CGG | + | chr2_1:65184547-65184566 | Msa0218110:intron | 25.0% |
| !! | TGCTTGATTTAGGAAATTTT+AGG | + | chr2_1:65184740-65184759 | Msa0218110:CDS | 25.0% |
| !! | GCTTGATTTAGGAAATTTTA+GGG | + | chr2_1:65184741-65184760 | Msa0218110:CDS | 25.0% |
| ! | AAAATGAGTTAGGAGAATTT+GGG | - | chr2_1:65183193-65183212 | None:intergenic | 25.0% |
| ! | AATCTAACTCTCTTCTTAAT+TGG | + | chr2_1:65183322-65183341 | Msa0218110:CDS | 25.0% |
| ! | ATCTAACTCTCTTCTTAATT+GGG | + | chr2_1:65183323-65183342 | Msa0218110:CDS | 25.0% |
| ! | TTATGAATGGAAATAGTTGA+AGG | - | chr2_1:65183386-65183405 | None:intergenic | 25.0% |
| ! | AGTAAAGTAAGCATTATGAA+TGG | - | chr2_1:65183399-65183418 | None:intergenic | 25.0% |
| !!! | TACTTTACTTTTATGAAGCA+CGG | + | chr2_1:65183410-65183429 | Msa0218110:intron | 25.0% |
| ! | ATCAGTGTAATTATATGTGT+CGG | + | chr2_1:65183511-65183530 | Msa0218110:intron | 25.0% |
| ! | TTCATAATCTATGCAATTTG+AGG | + | chr2_1:65183605-65183624 | Msa0218110:intron | 25.0% |
| !! | TGTTGTTGATTAGATCTTTA+AGG | - | chr2_1:65183764-65183783 | None:intergenic | 25.0% |
| ! | GATGAACAAATTACAAGAAA+AGG | + | chr2_1:65183894-65183913 | Msa0218110:CDS | 25.0% |
| !! | ATCATTGATTGATCAATAAC+TGG | - | chr2_1:65183984-65184003 | None:intergenic | 25.0% |
| ! | TAAAAATTGAATCTTGATGG+AGG | - | chr2_1:65184181-65184200 | None:intergenic | 25.0% |
| ! | TAATGAGAATAAGTACCAAA+GGG | + | chr2_1:65184286-65184305 | Msa0218110:CDS | 25.0% |
| !! | TTTGAAACTTAGCAAAATCA+CGG | + | chr2_1:65184434-65184453 | Msa0218110:intron | 25.0% |
| !!! | AATAGGATTTTTAAGGTTAG+TGG | + | chr2_1:65184507-65184526 | Msa0218110:intron | 25.0% |
| !!! | TATGTATAGCGTTTTTTGAT+CGG | + | chr2_1:65184547-65184566 | Msa0218110:intron | 25.0% |
| !! | TGCTTGATTTAGGAAATTTT+AGG | + | chr2_1:65184740-65184759 | Msa0218110:CDS | 25.0% |
| !! | GCTTGATTTAGGAAATTTTA+GGG | + | chr2_1:65184741-65184760 | Msa0218110:CDS | 25.0% |
| GAAAATGAGTTAGGAGAATT+TGG | - | chr2_1:65183194-65183213 | None:intergenic | 30.0% | |
| AAGGAAAAGGAAAATGAGTT+AGG | - | chr2_1:65183203-65183222 | None:intergenic | 30.0% | |
| !!! | TGCTTTTTTGAAAGAATGGA+GGG | - | chr2_1:65183255-65183274 | None:intergenic | 30.0% |
| !!! | TTGCTTTTTTGAAAGAATGG+AGG | - | chr2_1:65183256-65183275 | None:intergenic | 30.0% |
| CATCTTCATAGTTGAAATCA+TGG | + | chr2_1:65183293-65183312 | Msa0218110:exon | 30.0% | |
| AGATTATAAGTACCTTTCCT+TGG | - | chr2_1:65183359-65183378 | None:intergenic | 30.0% | |
| ATTGCATAGATTATGAACCA+CGG | - | chr2_1:65183602-65183621 | None:intergenic | 30.0% | |
| CTTTATTGTTATGCAGTCAA+TGG | + | chr2_1:65183638-65183657 | Msa0218110:intron | 30.0% | |
| ATCACTTCTATACACAACTT+TGG | + | chr2_1:65183674-65183693 | Msa0218110:CDS | 30.0% | |
| ! | AAAGGAATTGACTCAAACAA+TGG | + | chr2_1:65183912-65183931 | Msa0218110:CDS | 30.0% |
| ! | TGCAAAAGTTTACCTTTTTC+AGG | - | chr2_1:65184035-65184054 | None:intergenic | 30.0% |
| ! | TGAAAAAGGTAAACTTTTGC+AGG | + | chr2_1:65184034-65184053 | Msa0218110:CDS | 30.0% |
| TGGAAGAGTAAATAGGAAAA+GGG | + | chr2_1:65184238-65184257 | Msa0218110:CDS | 30.0% | |
| CTTTGGTACTTATTCTCATT+AGG | - | chr2_1:65184287-65184306 | None:intergenic | 30.0% | |
| CTAATGAGAATAAGTACCAA+AGG | + | chr2_1:65184285-65184304 | Msa0218110:CDS | 30.0% | |
| CAACGAGTTTGAGAAAATTA+CGG | + | chr2_1:65184380-65184399 | Msa0218110:intron | 30.0% | |
| !! | TTTTAGGAGACAAAGTTATG+TGG | + | chr2_1:65184670-65184689 | Msa0218110:intron | 30.0% |
| GGATTTAACTCATTGAAAGA+AGG | + | chr2_1:65184691-65184710 | Msa0218110:CDS | 30.0% | |
| ACACAAACTTTGCTTGATTT+AGG | + | chr2_1:65184730-65184749 | Msa0218110:CDS | 30.0% | |
| GAAAATGAGTTAGGAGAATT+TGG | - | chr2_1:65183194-65183213 | None:intergenic | 30.0% | |
| AAGGAAAAGGAAAATGAGTT+AGG | - | chr2_1:65183203-65183222 | None:intergenic | 30.0% | |
| !!! | TGCTTTTTTGAAAGAATGGA+GGG | - | chr2_1:65183255-65183274 | None:intergenic | 30.0% |
| !!! | TTGCTTTTTTGAAAGAATGG+AGG | - | chr2_1:65183256-65183275 | None:intergenic | 30.0% |
| CATCTTCATAGTTGAAATCA+TGG | + | chr2_1:65183293-65183312 | Msa0218110:exon | 30.0% | |
| AGATTATAAGTACCTTTCCT+TGG | - | chr2_1:65183359-65183378 | None:intergenic | 30.0% | |
| ATTGCATAGATTATGAACCA+CGG | - | chr2_1:65183602-65183621 | None:intergenic | 30.0% | |
| CTTTATTGTTATGCAGTCAA+TGG | + | chr2_1:65183638-65183657 | Msa0218110:intron | 30.0% | |
| ATCACTTCTATACACAACTT+TGG | + | chr2_1:65183674-65183693 | Msa0218110:CDS | 30.0% | |
| ! | AAAGGAATTGACTCAAACAA+TGG | + | chr2_1:65183912-65183931 | Msa0218110:CDS | 30.0% |
| ! | TGCAAAAGTTTACCTTTTTC+AGG | - | chr2_1:65184035-65184054 | None:intergenic | 30.0% |
| ! | TGAAAAAGGTAAACTTTTGC+AGG | + | chr2_1:65184034-65184053 | Msa0218110:CDS | 30.0% |
| TGGAAGAGTAAATAGGAAAA+GGG | + | chr2_1:65184238-65184257 | Msa0218110:CDS | 30.0% | |
| CTTTGGTACTTATTCTCATT+AGG | - | chr2_1:65184287-65184306 | None:intergenic | 30.0% | |
| CTAATGAGAATAAGTACCAA+AGG | + | chr2_1:65184285-65184304 | Msa0218110:CDS | 30.0% | |
| CAACGAGTTTGAGAAAATTA+CGG | + | chr2_1:65184380-65184399 | Msa0218110:intron | 30.0% | |
| !! | TTTTAGGAGACAAAGTTATG+TGG | + | chr2_1:65184670-65184689 | Msa0218110:intron | 30.0% |
| GGATTTAACTCATTGAAAGA+AGG | + | chr2_1:65184691-65184710 | Msa0218110:CDS | 30.0% | |
| ACACAAACTTTGCTTGATTT+AGG | + | chr2_1:65184730-65184749 | Msa0218110:CDS | 30.0% | |
| !! | TTTTGAAAGAATGGAGGGAA+GGG | - | chr2_1:65183250-65183269 | None:intergenic | 35.0% |
| !! | TTTTTGAAAGAATGGAGGGA+AGG | - | chr2_1:65183251-65183270 | None:intergenic | 35.0% |
| TATTGTTATGCAGTCAATGG+AGG | + | chr2_1:65183641-65183660 | Msa0218110:intron | 35.0% | |
| GAAATGTCAAAGACTTCTCT+TGG | + | chr2_1:65183812-65183831 | Msa0218110:CDS | 35.0% | |
| !!! | TTTTCAGGTAGTGGTCTATT+TGG | - | chr2_1:65184020-65184039 | None:intergenic | 35.0% |
| AATAGACCACTACCTGAAAA+AGG | + | chr2_1:65184020-65184039 | Msa0218110:CDS | 35.0% | |
| !!! | AGTTTACCTTTTTCAGGTAG+TGG | - | chr2_1:65184029-65184048 | None:intergenic | 35.0% |
| AGAAGAAGAGTTTGAAGAAG+AGG | - | chr2_1:65184077-65184096 | None:intergenic | 35.0% | |
| ACTAATGCTAATTCTCACTG+TGG | + | chr2_1:65184218-65184237 | Msa0218110:CDS | 35.0% | |
| GTGGAAGAGTAAATAGGAAA+AGG | + | chr2_1:65184237-65184256 | Msa0218110:CDS | 35.0% | |
| ATCAATGAAGTACAACCCTT+TGG | - | chr2_1:65184304-65184323 | None:intergenic | 35.0% | |
| !!! | TATAGCGTTTTTTGATCGGT+AGG | + | chr2_1:65184551-65184570 | Msa0218110:intron | 35.0% |
| !! | GGTAGTGGTATGTTTGTTTT+AGG | + | chr2_1:65184654-65184673 | Msa0218110:intron | 35.0% |
| AGCAAAAGTAGAATGTGAAG+AGG | - | chr2_1:65184781-65184800 | None:intergenic | 35.0% | |
| !! | TTTTGAAAGAATGGAGGGAA+GGG | - | chr2_1:65183250-65183269 | None:intergenic | 35.0% |
| !! | TTTTTGAAAGAATGGAGGGA+AGG | - | chr2_1:65183251-65183270 | None:intergenic | 35.0% |
| TATTGTTATGCAGTCAATGG+AGG | + | chr2_1:65183641-65183660 | Msa0218110:intron | 35.0% | |
| GAAATGTCAAAGACTTCTCT+TGG | + | chr2_1:65183812-65183831 | Msa0218110:CDS | 35.0% | |
| !!! | TTTTCAGGTAGTGGTCTATT+TGG | - | chr2_1:65184020-65184039 | None:intergenic | 35.0% |
| AATAGACCACTACCTGAAAA+AGG | + | chr2_1:65184020-65184039 | Msa0218110:CDS | 35.0% | |
| !!! | AGTTTACCTTTTTCAGGTAG+TGG | - | chr2_1:65184029-65184048 | None:intergenic | 35.0% |
| AGAAGAAGAGTTTGAAGAAG+AGG | - | chr2_1:65184077-65184096 | None:intergenic | 35.0% | |
| ACTAATGCTAATTCTCACTG+TGG | + | chr2_1:65184218-65184237 | Msa0218110:CDS | 35.0% | |
| GTGGAAGAGTAAATAGGAAA+AGG | + | chr2_1:65184237-65184256 | Msa0218110:CDS | 35.0% | |
| ATCAATGAAGTACAACCCTT+TGG | - | chr2_1:65184304-65184323 | None:intergenic | 35.0% | |
| !!! | TATAGCGTTTTTTGATCGGT+AGG | + | chr2_1:65184551-65184570 | Msa0218110:intron | 35.0% |
| !! | GGTAGTGGTATGTTTGTTTT+AGG | + | chr2_1:65184654-65184673 | Msa0218110:intron | 35.0% |
| AGCAAAAGTAGAATGTGAAG+AGG | - | chr2_1:65184781-65184800 | None:intergenic | 35.0% | |
| ATGAGTTAGGAGAATTTGGG+TGG | - | chr2_1:65183190-65183209 | None:intergenic | 40.0% | |
| !!! | GTGGAGCATTTTGTTGTTGA+TGG | - | chr2_1:65183851-65183870 | None:intergenic | 40.0% |
| CAACAAAATGCTCCACTTTC+TGG | + | chr2_1:65183855-65183874 | Msa0218110:CDS | 40.0% | |
| ATGCTTGAAACTCCAGAAAG+TGG | - | chr2_1:65183870-65183889 | None:intergenic | 40.0% | |
| CTTCAAACTCTTCTTCTTGC+AGG | + | chr2_1:65184080-65184099 | Msa0218110:CDS | 40.0% | |
| AAAGACAGGTGGAATCTCAA+AGG | - | chr2_1:65184147-65184166 | None:intergenic | 40.0% | |
| TTCCACCTGTCTTTATACCT+AGG | + | chr2_1:65184153-65184172 | Msa0218110:CDS | 40.0% | |
| ATCCTAGGTATAAAGACAGG+TGG | - | chr2_1:65184158-65184177 | None:intergenic | 40.0% | |
| AGGATCCTAGGTATAAAGAC+AGG | - | chr2_1:65184161-65184180 | None:intergenic | 40.0% | |
| CTCACTGTGGAAGAGTAAAT+AGG | + | chr2_1:65184231-65184250 | Msa0218110:CDS | 40.0% | |
| TGATCGGTAGGAATTGAACT+CGG | + | chr2_1:65184563-65184582 | Msa0218110:intron | 40.0% | |
| AGGAATTGAACTCGGTACTT+TGG | + | chr2_1:65184571-65184590 | Msa0218110:intron | 40.0% | |
| TATCTGACTGTCGTAAACTC+CGG | - | chr2_1:65184600-65184619 | None:intergenic | 40.0% | |
| ATGAGTTAGGAGAATTTGGG+TGG | - | chr2_1:65183190-65183209 | None:intergenic | 40.0% | |
| !!! | GTGGAGCATTTTGTTGTTGA+TGG | - | chr2_1:65183851-65183870 | None:intergenic | 40.0% |
| CAACAAAATGCTCCACTTTC+TGG | + | chr2_1:65183855-65183874 | Msa0218110:CDS | 40.0% | |
| ATGCTTGAAACTCCAGAAAG+TGG | - | chr2_1:65183870-65183889 | None:intergenic | 40.0% | |
| CTTCAAACTCTTCTTCTTGC+AGG | + | chr2_1:65184080-65184099 | Msa0218110:CDS | 40.0% | |
| AAAGACAGGTGGAATCTCAA+AGG | - | chr2_1:65184147-65184166 | None:intergenic | 40.0% | |
| TTCCACCTGTCTTTATACCT+AGG | + | chr2_1:65184153-65184172 | Msa0218110:CDS | 40.0% | |
| ATCCTAGGTATAAAGACAGG+TGG | - | chr2_1:65184158-65184177 | None:intergenic | 40.0% | |
| AGGATCCTAGGTATAAAGAC+AGG | - | chr2_1:65184161-65184180 | None:intergenic | 40.0% | |
| CTCACTGTGGAAGAGTAAAT+AGG | + | chr2_1:65184231-65184250 | Msa0218110:CDS | 40.0% | |
| TGATCGGTAGGAATTGAACT+CGG | + | chr2_1:65184563-65184582 | Msa0218110:intron | 40.0% | |
| AGGAATTGAACTCGGTACTT+TGG | + | chr2_1:65184571-65184590 | Msa0218110:intron | 40.0% | |
| TATCTGACTGTCGTAAACTC+CGG | - | chr2_1:65184600-65184619 | None:intergenic | 40.0% | |
| ! | AGAATTTGGGTGGAGGTACA+AGG | - | chr2_1:65183180-65183199 | None:intergenic | 45.0% |
| AGTTAGGAGAATTTGGGTGG+AGG | - | chr2_1:65183187-65183206 | None:intergenic | 45.0% | |
| AATTGGGCTTACTTCTGCCA+AGG | + | chr2_1:65183339-65183358 | Msa0218110:CDS | 45.0% | |
| ATGAAGCACGGATACGAACA+CGG | + | chr2_1:65183422-65183441 | Msa0218110:intron | 45.0% | |
| ! | TATATGTGTCGGCATCGTGT+CGG | + | chr2_1:65183522-65183541 | Msa0218110:intron | 45.0% |
| TATGAACCACGGACACTCTT+CGG | - | chr2_1:65183591-65183610 | None:intergenic | 45.0% | |
| TGCAGTCAATGGAGGATTTG+AGG | + | chr2_1:65183649-65183668 | Msa0218110:intron | 45.0% | |
| ATCTCAAAGGACTCAAGAGG+TGG | - | chr2_1:65184134-65184153 | None:intergenic | 45.0% | |
| GGAATCTCAAAGGACTCAAG+AGG | - | chr2_1:65184137-65184156 | None:intergenic | 45.0% | |
| GAATCTTGATGGAGGATCCT+AGG | - | chr2_1:65184173-65184192 | None:intergenic | 45.0% | |
| ! | AGAATTTGGGTGGAGGTACA+AGG | - | chr2_1:65183180-65183199 | None:intergenic | 45.0% |
| AGTTAGGAGAATTTGGGTGG+AGG | - | chr2_1:65183187-65183206 | None:intergenic | 45.0% | |
| AATTGGGCTTACTTCTGCCA+AGG | + | chr2_1:65183339-65183358 | Msa0218110:CDS | 45.0% | |
| ATGAAGCACGGATACGAACA+CGG | + | chr2_1:65183422-65183441 | Msa0218110:intron | 45.0% | |
| ! | TATATGTGTCGGCATCGTGT+CGG | + | chr2_1:65183522-65183541 | Msa0218110:intron | 45.0% |
| TATGAACCACGGACACTCTT+CGG | - | chr2_1:65183591-65183610 | None:intergenic | 45.0% | |
| TGCAGTCAATGGAGGATTTG+AGG | + | chr2_1:65183649-65183668 | Msa0218110:intron | 45.0% | |
| ATCTCAAAGGACTCAAGAGG+TGG | - | chr2_1:65184134-65184153 | None:intergenic | 45.0% | |
| GGAATCTCAAAGGACTCAAG+AGG | - | chr2_1:65184137-65184156 | None:intergenic | 45.0% | |
| GAATCTTGATGGAGGATCCT+AGG | - | chr2_1:65184173-65184192 | None:intergenic | 45.0% | |
| !!! | TTTTTAATTTAGTAAATATT+TGG | + | chr2_1:65184352-65184371 | Msa0218110:intron | 5.0% |
| !!! | TTTTTAATTTAGTAAATATT+TGG | + | chr2_1:65184352-65184371 | Msa0218110:intron | 5.0% |
| GTGAGTGGGAGAGAAGGAAA+AGG | - | chr2_1:65183216-65183235 | None:intergenic | 50.0% | |
| ! | GGGAAAGAGAGAGTGTGAGT+GGG | - | chr2_1:65183230-65183249 | None:intergenic | 50.0% |
| ! | AGGGAAAGAGAGAGTGTGAG+TGG | - | chr2_1:65183231-65183250 | None:intergenic | 50.0% |
| GGCTTACTTCTGCCAAGGAA+AGG | + | chr2_1:65183344-65183363 | Msa0218110:CDS | 50.0% | |
| CATGACACATATCCGACACC+AGG | + | chr2_1:65183552-65183571 | Msa0218110:intron | 50.0% | |
| TTAGACGTGTGTCCTGGTGT+CGG | - | chr2_1:65183567-65183586 | None:intergenic | 50.0% | |
| ! | TTCGGATTAGACGTGTGTCC+TGG | - | chr2_1:65183573-65183592 | None:intergenic | 50.0% |
| !! | TCTAATCCGAAGAGTGTCCG+TGG | + | chr2_1:65183582-65183601 | Msa0218110:intron | 50.0% |
| TTGCAGGCAGTGATGAAAGC+TGG | + | chr2_1:65184050-65184069 | Msa0218110:CDS | 50.0% | |
| TTGCAGGACCACTTCCTCAA+TGG | + | chr2_1:65184096-65184115 | Msa0218110:CDS | 50.0% | |
| GGGTGTTTCCATTGAGGAAG+TGG | - | chr2_1:65184107-65184126 | None:intergenic | 50.0% | |
| TCAAAGGACTCAAGAGGTGG+AGG | - | chr2_1:65184131-65184150 | None:intergenic | 50.0% | |
| !! | GAACTCGGTACTTTGGAGTC+CGG | + | chr2_1:65184578-65184597 | Msa0218110:intron | 50.0% |
| GTGAGTGGGAGAGAAGGAAA+AGG | - | chr2_1:65183216-65183235 | None:intergenic | 50.0% | |
| ! | GGGAAAGAGAGAGTGTGAGT+GGG | - | chr2_1:65183230-65183249 | None:intergenic | 50.0% |
| ! | AGGGAAAGAGAGAGTGTGAG+TGG | - | chr2_1:65183231-65183250 | None:intergenic | 50.0% |
| GGCTTACTTCTGCCAAGGAA+AGG | + | chr2_1:65183344-65183363 | Msa0218110:CDS | 50.0% | |
| CATGACACATATCCGACACC+AGG | + | chr2_1:65183552-65183571 | Msa0218110:intron | 50.0% | |
| TTAGACGTGTGTCCTGGTGT+CGG | - | chr2_1:65183567-65183586 | None:intergenic | 50.0% | |
| ! | TTCGGATTAGACGTGTGTCC+TGG | - | chr2_1:65183573-65183592 | None:intergenic | 50.0% |
| !! | TCTAATCCGAAGAGTGTCCG+TGG | + | chr2_1:65183582-65183601 | Msa0218110:intron | 50.0% |
| TTGCAGGCAGTGATGAAAGC+TGG | + | chr2_1:65184050-65184069 | Msa0218110:CDS | 50.0% | |
| TTGCAGGACCACTTCCTCAA+TGG | + | chr2_1:65184096-65184115 | Msa0218110:CDS | 50.0% | |
| GGGTGTTTCCATTGAGGAAG+TGG | - | chr2_1:65184107-65184126 | None:intergenic | 50.0% | |
| TCAAAGGACTCAAGAGGTGG+AGG | - | chr2_1:65184131-65184150 | None:intergenic | 50.0% | |
| !! | GAACTCGGTACTTTGGAGTC+CGG | + | chr2_1:65184578-65184597 | Msa0218110:intron | 50.0% |
| ! | GAGAGTGTGAGTGGGAGAGA+AGG | - | chr2_1:65183222-65183241 | None:intergenic | 55.0% |
| ACGGATACGAACACGGACAC+CGG | + | chr2_1:65183429-65183448 | Msa0218110:intron | 55.0% | |
| GTCAGTGTCTGTGTCGTGTC+CGG | - | chr2_1:65183451-65183470 | None:intergenic | 55.0% | |
| !! | GGAGGAGGGTGTTTCCATTG+AGG | - | chr2_1:65184113-65184132 | None:intergenic | 55.0% |
| AGGACTCAAGAGGTGGAGGA+GGG | - | chr2_1:65184127-65184146 | None:intergenic | 55.0% | |
| AAGGACTCAAGAGGTGGAGG+AGG | - | chr2_1:65184128-65184147 | None:intergenic | 55.0% | |
| ! | GAGAGTGTGAGTGGGAGAGA+AGG | - | chr2_1:65183222-65183241 | None:intergenic | 55.0% |
| ACGGATACGAACACGGACAC+CGG | + | chr2_1:65183429-65183448 | Msa0218110:intron | 55.0% | |
| GTCAGTGTCTGTGTCGTGTC+CGG | - | chr2_1:65183451-65183470 | None:intergenic | 55.0% | |
| !! | GGAGGAGGGTGTTTCCATTG+AGG | - | chr2_1:65184113-65184132 | None:intergenic | 55.0% |
| AGGACTCAAGAGGTGGAGGA+GGG | - | chr2_1:65184127-65184146 | None:intergenic | 55.0% | |
| AAGGACTCAAGAGGTGGAGG+AGG | - | chr2_1:65184128-65184147 | None:intergenic | 55.0% | |
| ! | TGTCGGCATCGTGTCGGTGT+CGG | + | chr2_1:65183528-65183547 | Msa0218110:intron | 60.0% |
| CCAACCAGCTGCGCTAGACT+CGG | + | chr2_1:65184629-65184648 | Msa0218110:intron | 60.0% | |
| CAACCAGCTGCGCTAGACTC+GGG | + | chr2_1:65184630-65184649 | Msa0218110:intron | 60.0% | |
| ! | TGTCGGCATCGTGTCGGTGT+CGG | + | chr2_1:65183528-65183547 | Msa0218110:intron | 60.0% |
| CCAACCAGCTGCGCTAGACT+CGG | + | chr2_1:65184629-65184648 | Msa0218110:intron | 60.0% | |
| CAACCAGCTGCGCTAGACTC+GGG | + | chr2_1:65184630-65184649 | Msa0218110:intron | 60.0% | |
| CCGAGTCTAGCGCAGCTGGT+TGG | - | chr2_1:65184632-65184651 | None:intergenic | 65.0% | |
| GCGCTAGACTCGGGTGGTAG+TGG | + | chr2_1:65184639-65184658 | Msa0218110:intron | 65.0% | |
| CCGAGTCTAGCGCAGCTGGT+TGG | - | chr2_1:65184632-65184651 | None:intergenic | 65.0% | |
| GCGCTAGACTCGGGTGGTAG+TGG | + | chr2_1:65184639-65184658 | Msa0218110:intron | 65.0% | |
| CCACCCGAGTCTAGCGCAGC+TGG | - | chr2_1:65184636-65184655 | None:intergenic | 70.0% | |
| CCAGCTGCGCTAGACTCGGG+TGG | + | chr2_1:65184633-65184652 | Msa0218110:intron | 70.0% | |
| CCACCCGAGTCTAGCGCAGC+TGG | - | chr2_1:65184636-65184655 | None:intergenic | 70.0% | |
| CCAGCTGCGCTAGACTCGGG+TGG | + | chr2_1:65184633-65184652 | Msa0218110:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 65183154 | 65184846 | 65183154 | ID=Msa0218110;Name=Msa0218110 |
| chr2_1 | mRNA | 65183154 | 65184846 | 65183154 | ID=Msa0218110-mRNA-1;Parent=Msa0218110;Name=Msa0218110-mRNA-1;_AED=0.22;_eAED=0.22;_QI=158|0.5|0.33|1|1|1|3|0|293 |
| chr2_1 | exon | 65183154 | 65183365 | 65183154 | ID=Msa0218110-mRNA-1:exon:18101;Parent=Msa0218110-mRNA-1 |
| chr2_1 | exon | 65183654 | 65184310 | 65183654 | ID=Msa0218110-mRNA-1:exon:18102;Parent=Msa0218110-mRNA-1 |
| chr2_1 | exon | 65184676 | 65184846 | 65184676 | ID=Msa0218110-mRNA-1:exon:18103;Parent=Msa0218110-mRNA-1 |
| chr2_1 | five_prime_UTR | 65183154 | 65183311 | 65183154 | ID=Msa0218110-mRNA-1:five_prime_utr;Parent=Msa0218110-mRNA-1 |
| chr2_1 | CDS | 65183312 | 65183365 | 65183312 | ID=Msa0218110-mRNA-1:cds;Parent=Msa0218110-mRNA-1 |
| chr2_1 | CDS | 65183654 | 65184310 | 65183654 | ID=Msa0218110-mRNA-1:cds;Parent=Msa0218110-mRNA-1 |
| chr2_1 | CDS | 65184676 | 65184846 | 65184676 | ID=Msa0218110-mRNA-1:cds;Parent=Msa0218110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
