Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258190 | XP_013464838.1 | 96.818 | 220 | 7 | 0 | 1 | 220 | 1 | 220 | 7.93e-154 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258190 | A0A072VBV9 | 96.818 | 220 | 7 | 0 | 1 | 220 | 1 | 220 | 3.79e-154 | 439 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0218110 | Msa0258190 | 0.884810 | 1.394962e-71 | -8.615850e-47 |
| Msa0219370 | Msa0258190 | 0.885391 | 8.466591e-72 | -8.615850e-47 |
| Msa0258190 | Msa0297010 | 0.847706 | 9.759882e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258190 | MtrunA17_Chr2g0320271 | 96.818 | 220 | 7 | 0 | 1 | 220 | 1 | 220 | 7.30e-158 | 439 |
| Msa0258190 | MtrunA17_Chr4g0028161 | 61.570 | 242 | 78 | 6 | 1 | 229 | 1 | 240 | 5.42e-92 | 272 |
| Msa0258190 | MtrunA17_Chr1g0197151 | 50.276 | 181 | 71 | 5 | 7 | 185 | 6 | 169 | 3.32e-47 | 157 |
| Msa0258190 | MtrunA17_Chr2g0327801 | 32.243 | 214 | 90 | 10 | 14 | 190 | 9 | 204 | 3.12e-20 | 87.4 |
| Msa0258190 | MtrunA17_Chr4g0030841 | 31.250 | 240 | 106 | 8 | 14 | 207 | 8 | 234 | 3.16e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258190 | AT5G22930.1 | 52.941 | 238 | 76 | 5 | 1 | 220 | 1 | 220 | 2.24e-77 | 235 |
| Msa0258190 | AT3G44940.1 | 49.811 | 265 | 91 | 5 | 3 | 243 | 2 | 248 | 2.22e-69 | 215 |
| Msa0258190 | AT2G28140.1 | 51.556 | 225 | 80 | 8 | 4 | 223 | 5 | 205 | 3.85e-57 | 182 |
| Msa0258190 | AT2G28690.1 | 36.500 | 200 | 91 | 4 | 11 | 189 | 8 | 192 | 2.54e-28 | 108 |
| Msa0258190 | AT5G59760.1 | 34.031 | 191 | 108 | 5 | 10 | 190 | 8 | 190 | 1.46e-20 | 88.2 |
Find 50 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTAACTCTCTTCTTAAT+TGG | 0.059847 | 2_2:+54406357 | Msa0258190:CDS |
| GAAAATGAGTTAGGAGAATT+TGG | 0.137304 | 2_2:-54406226 | None:intergenic |
| CAACAAAATGCTCCACTTTC+TGG | 0.148671 | 2_2:+54406887 | Msa0258190:CDS |
| TGTTGTTGATTAGATCTTTA+AGG | 0.168436 | 2_2:-54406793 | None:intergenic |
| ACACAAACTTTGCTTGATTT+AGG | 0.216354 | 2_2:+54407762 | Msa0258190:CDS |
| CTTCAAACTCTTCTTCTTGC+AGG | 0.246829 | 2_2:+54407112 | Msa0258190:CDS |
| ATCATTGATTGATCAATAAC+TGG | 0.326107 | 2_2:-54407013 | None:intergenic |
| ATCTAACTCTCTTCTTAATT+GGG | 0.334531 | 2_2:+54406358 | Msa0258190:CDS |
| AATAGACCACTACCTGAAAA+AGG | 0.345008 | 2_2:+54407052 | Msa0258190:CDS |
| CTCACTGTGGAAGAGTAAAT+AGG | 0.378934 | 2_2:+54407263 | Msa0258190:CDS |
| CATCTTCATAGTTGAAATCA+TGG | 0.391848 | 2_2:+54406328 | Msa0258190:exon |
| AAGGAAAAGGAAAATGAGTT+AGG | 0.406213 | 2_2:-54406235 | None:intergenic |
| GTGGAAGAGTAAATAGGAAA+AGG | 0.416196 | 2_2:+54407269 | Msa0258190:CDS |
| CAAATGTCAAAGACTTCTCT+TGG | 0.417648 | 2_2:+54406844 | Msa0258190:CDS |
| GATGAACAAATTACAAGAAA+AGG | 0.425567 | 2_2:+54406926 | Msa0258190:CDS |
| TTGCAGGACCACTTCCTCAA+TGG | 0.430493 | 2_2:+54407128 | Msa0258190:CDS |
| AAAATGAGTTAGGAGAATTT+GGG | 0.431400 | 2_2:-54406225 | None:intergenic |
| ATCACTTCTATACACAACTT+TGG | 0.432240 | 2_2:+54406706 | Msa0258190:CDS |
| GAGAGTGTGAGTGGGAGAGA+AGG | 0.436158 | 2_2:-54406254 | None:intergenic |
| GGGTGTTTCCATTGAGGAAG+TGG | 0.468433 | 2_2:-54407136 | None:intergenic |
| TGCAGTCAATGGAGGATTTG+AGG | 0.469227 | 2_2:+54406681 | Msa0258190:intron |
| TGGAAGAGTAAATAGGAAAA+GGG | 0.473459 | 2_2:+54407270 | Msa0258190:CDS |
| GTGAGTGGGAGAGAAGGAAA+AGG | 0.479057 | 2_2:-54406248 | None:intergenic |
| GAATCTTGATGGAGGATCCT+AGG | 0.488623 | 2_2:-54407202 | None:intergenic |
| AGAAGAAGAGTTTGAAGAAG+AGG | 0.488907 | 2_2:-54407106 | None:intergenic |
| ATGCTTGAAACTCCAGAAAG+TGG | 0.498166 | 2_2:-54406899 | None:intergenic |
| AGGGAAAGAGAGAGTGTGAG+TGG | 0.499976 | 2_2:-54406263 | None:intergenic |
| AGATTATAAGTACCTTTCCT+TGG | 0.516487 | 2_2:-54406391 | None:intergenic |
| AGTTAGGAGAATTTGGGTGG+AGG | 0.521579 | 2_2:-54406219 | None:intergenic |
| AAAGGAATTGACTCAAACAA+TGG | 0.525642 | 2_2:+54406944 | Msa0258190:CDS |
| GGAGGAGGGTGTTTCCATTG+AGG | 0.528643 | 2_2:-54407142 | None:intergenic |
| TTGCAGGCAGTGATGAAAGC+TGG | 0.529664 | 2_2:+54407082 | Msa0258190:CDS |
| GGGAAAGAGAGAGTGTGAGT+GGG | 0.539104 | 2_2:-54406262 | None:intergenic |
| AAAGACTCAAGAGGTGGAGG+AGG | 0.539125 | 2_2:-54407157 | None:intergenic |
| GGATTTAACTCATTGAAAGA+AGG | 0.544860 | 2_2:+54407723 | Msa0258190:CDS |
| AGAATTTGGGTGGAGGTACA+AGG | 0.546342 | 2_2:-54406212 | None:intergenic |
| GGCTTACTTCTGCCAAGGAA+AGG | 0.551033 | 2_2:+54406379 | Msa0258190:CDS |
| AATTGGGCTTACTTCTGCCA+AGG | 0.555631 | 2_2:+54406374 | Msa0258190:CDS |
| TCAAAAGACTCAAGAGGTGG+AGG | 0.564067 | 2_2:-54407160 | None:intergenic |
| ATGAGTTAGGAGAATTTGGG+TGG | 0.591697 | 2_2:-54406222 | None:intergenic |
| TATTGTTATGCAGTCAATGG+AGG | 0.594697 | 2_2:+54406673 | Msa0258190:intron |
| ATCTCAAAAGACTCAAGAGG+TGG | 0.604562 | 2_2:-54407163 | None:intergenic |
| AGCAAAAGTAGAATGTGAAG+AGG | 0.606333 | 2_2:-54407810 | None:intergenic |
| AGGATCCTAGGTATAGAGAC+AGG | 0.607052 | 2_2:-54407190 | None:intergenic |
| TCCTAGGTATAGAGACAGGT+GGG | 0.627743 | 2_2:-54407186 | None:intergenic |
| AAGACTCAAGAGGTGGAGGA+GGG | 0.640632 | 2_2:-54407156 | None:intergenic |
| ATCCTAGGTATAGAGACAGG+TGG | 0.649328 | 2_2:-54407187 | None:intergenic |
| GGGATCTCAAAAGACTCAAG+AGG | 0.652928 | 2_2:-54407166 | None:intergenic |
| TCCCACCTGTCTCTATACCT+AGG | 0.661572 | 2_2:+54407185 | Msa0258190:CDS |
| ACTAATGCTAATTCTCACTG+TGG | 0.712843 | 2_2:+54407250 | Msa0258190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGCTTTTTTGAAAGAA+TGG | - | chr2_2:54406294-54406313 | None:intergenic | 20.0% |
| !! | AGTAAAGTAAACATTATGAA+TGG | - | chr2_2:54406434-54406453 | None:intergenic | 20.0% |
| !! | TACTAAAAATTGAATCTTGA+TGG | - | chr2_2:54407216-54407235 | None:intergenic | 20.0% |
| !! | CCTATTATCTTGAAAATATT+TGG | - | chr2_2:54407525-54407544 | None:intergenic | 20.0% |
| !!! | CCAAATATTTTCAAGATAAT+AGG | + | chr2_2:54407522-54407541 | Msa0258190:intron | 20.0% |
| !!! | TCAAGATAATAGGATTTTTA+AGG | + | chr2_2:54407532-54407551 | Msa0258190:intron | 20.0% |
| !!! | TATTTGCTTTTTTGAAAGAA+TGG | - | chr2_2:54406294-54406313 | None:intergenic | 20.0% |
| !! | AGTAAAGTAAACATTATGAA+TGG | - | chr2_2:54406434-54406453 | None:intergenic | 20.0% |
| !! | TACTAAAAATTGAATCTTGA+TGG | - | chr2_2:54407216-54407235 | None:intergenic | 20.0% |
| !! | CCTATTATCTTGAAAATATT+TGG | - | chr2_2:54407525-54407544 | None:intergenic | 20.0% |
| !!! | CCAAATATTTTCAAGATAAT+AGG | + | chr2_2:54407522-54407541 | Msa0258190:intron | 20.0% |
| !!! | TCAAGATAATAGGATTTTTA+AGG | + | chr2_2:54407532-54407551 | Msa0258190:intron | 20.0% |
| ! | AAAATGAGTTAGGAGAATTT+GGG | - | chr2_2:54406228-54406247 | None:intergenic | 25.0% |
| ! | AATCTAACTCTCTTCTTAAT+TGG | + | chr2_2:54406357-54406376 | Msa0258190:CDS | 25.0% |
| ! | ATCTAACTCTCTTCTTAATT+GGG | + | chr2_2:54406358-54406377 | Msa0258190:CDS | 25.0% |
| ! | TTATGAATGGAAATAGTTGA+AGG | - | chr2_2:54406421-54406440 | None:intergenic | 25.0% |
| !!! | TACTTTACTTTTATGAAGCA+CGG | + | chr2_2:54406445-54406464 | Msa0258190:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | + | chr2_2:54406543-54406562 | Msa0258190:intron | 25.0% |
| ! | TTCATAATCTATGCAATTTG+AGG | + | chr2_2:54406637-54406656 | Msa0258190:intron | 25.0% |
| !! | TGTTGTTGATTAGATCTTTA+AGG | - | chr2_2:54406796-54406815 | None:intergenic | 25.0% |
| ! | GATGAACAAATTACAAGAAA+AGG | + | chr2_2:54406926-54406945 | Msa0258190:CDS | 25.0% |
| !! | ATCATTGATTGATCAATAAC+TGG | - | chr2_2:54407016-54407035 | None:intergenic | 25.0% |
| ! | TAAAAATTGAATCTTGATGG+AGG | - | chr2_2:54407213-54407232 | None:intergenic | 25.0% |
| ! | TAATGAGAATAAGTACCAAA+GGG | + | chr2_2:54407318-54407337 | Msa0258190:intron | 25.0% |
| !! | TGATTTTGCTAAGTTTCAAA+CGG | - | chr2_2:54407466-54407485 | None:intergenic | 25.0% |
| !! | TTTGAAACTTAGCAAAATCA+CGG | + | chr2_2:54407466-54407485 | Msa0258190:intron | 25.0% |
| !!! | AATAGGATTTTTAAGGTTAG+TGG | + | chr2_2:54407539-54407558 | Msa0258190:intron | 25.0% |
| !!! | TATGTATAGCGTTTTTTGAT+CGG | + | chr2_2:54407579-54407598 | Msa0258190:intron | 25.0% |
| !! | TGCTTGATTTAGGAAATTTT+AGG | + | chr2_2:54407772-54407791 | Msa0258190:CDS | 25.0% |
| !! | GCTTGATTTAGGAAATTTTA+GGG | + | chr2_2:54407773-54407792 | Msa0258190:CDS | 25.0% |
| ! | AAAATGAGTTAGGAGAATTT+GGG | - | chr2_2:54406228-54406247 | None:intergenic | 25.0% |
| ! | AATCTAACTCTCTTCTTAAT+TGG | + | chr2_2:54406357-54406376 | Msa0258190:CDS | 25.0% |
| ! | ATCTAACTCTCTTCTTAATT+GGG | + | chr2_2:54406358-54406377 | Msa0258190:CDS | 25.0% |
| ! | TTATGAATGGAAATAGTTGA+AGG | - | chr2_2:54406421-54406440 | None:intergenic | 25.0% |
| !!! | TACTTTACTTTTATGAAGCA+CGG | + | chr2_2:54406445-54406464 | Msa0258190:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | + | chr2_2:54406543-54406562 | Msa0258190:intron | 25.0% |
| ! | TTCATAATCTATGCAATTTG+AGG | + | chr2_2:54406637-54406656 | Msa0258190:intron | 25.0% |
| !! | TGTTGTTGATTAGATCTTTA+AGG | - | chr2_2:54406796-54406815 | None:intergenic | 25.0% |
| ! | GATGAACAAATTACAAGAAA+AGG | + | chr2_2:54406926-54406945 | Msa0258190:CDS | 25.0% |
| !! | ATCATTGATTGATCAATAAC+TGG | - | chr2_2:54407016-54407035 | None:intergenic | 25.0% |
| ! | TAAAAATTGAATCTTGATGG+AGG | - | chr2_2:54407213-54407232 | None:intergenic | 25.0% |
| ! | TAATGAGAATAAGTACCAAA+GGG | + | chr2_2:54407318-54407337 | Msa0258190:intron | 25.0% |
| !! | TGATTTTGCTAAGTTTCAAA+CGG | - | chr2_2:54407466-54407485 | None:intergenic | 25.0% |
| !! | TTTGAAACTTAGCAAAATCA+CGG | + | chr2_2:54407466-54407485 | Msa0258190:intron | 25.0% |
| !!! | AATAGGATTTTTAAGGTTAG+TGG | + | chr2_2:54407539-54407558 | Msa0258190:intron | 25.0% |
| !!! | TATGTATAGCGTTTTTTGAT+CGG | + | chr2_2:54407579-54407598 | Msa0258190:intron | 25.0% |
| !! | TGCTTGATTTAGGAAATTTT+AGG | + | chr2_2:54407772-54407791 | Msa0258190:CDS | 25.0% |
| !! | GCTTGATTTAGGAAATTTTA+GGG | + | chr2_2:54407773-54407792 | Msa0258190:CDS | 25.0% |
| GAAAATGAGTTAGGAGAATT+TGG | - | chr2_2:54406229-54406248 | None:intergenic | 30.0% | |
| AAGGAAAAGGAAAATGAGTT+AGG | - | chr2_2:54406238-54406257 | None:intergenic | 30.0% | |
| !!! | TGCTTTTTTGAAAGAATGGA+GGG | - | chr2_2:54406290-54406309 | None:intergenic | 30.0% |
| !!! | TTGCTTTTTTGAAAGAATGG+AGG | - | chr2_2:54406291-54406310 | None:intergenic | 30.0% |
| CATCTTCATAGTTGAAATCA+TGG | + | chr2_2:54406328-54406347 | Msa0258190:exon | 30.0% | |
| AGATTATAAGTACCTTTCCT+TGG | - | chr2_2:54406394-54406413 | None:intergenic | 30.0% | |
| ATTGCATAGATTATGAACCA+CGG | - | chr2_2:54406634-54406653 | None:intergenic | 30.0% | |
| CTTTATTGTTATGCAGTCAA+TGG | + | chr2_2:54406670-54406689 | Msa0258190:intron | 30.0% | |
| ATCACTTCTATACACAACTT+TGG | + | chr2_2:54406706-54406725 | Msa0258190:CDS | 30.0% | |
| ! | AAAGGAATTGACTCAAACAA+TGG | + | chr2_2:54406944-54406963 | Msa0258190:CDS | 30.0% |
| ! | TGCAAAAGTTTACCTTTTTC+AGG | - | chr2_2:54407067-54407086 | None:intergenic | 30.0% |
| ! | TGAAAAAGGTAAACTTTTGC+AGG | + | chr2_2:54407066-54407085 | Msa0258190:CDS | 30.0% |
| TGGAAGAGTAAATAGGAAAA+GGG | + | chr2_2:54407270-54407289 | Msa0258190:CDS | 30.0% | |
| CTTTGGTACTTATTCTCATT+AGG | - | chr2_2:54407319-54407338 | None:intergenic | 30.0% | |
| CTAATGAGAATAAGTACCAA+AGG | + | chr2_2:54407317-54407336 | Msa0258190:intron | 30.0% | |
| CAACGAGTTTGAGAAAATTA+CGG | + | chr2_2:54407412-54407431 | Msa0258190:intron | 30.0% | |
| !! | TTTTAGGAGACAAAGTTATG+TGG | + | chr2_2:54407702-54407721 | Msa0258190:intron | 30.0% |
| GGATTTAACTCATTGAAAGA+AGG | + | chr2_2:54407723-54407742 | Msa0258190:CDS | 30.0% | |
| ACACAAACTTTGCTTGATTT+AGG | + | chr2_2:54407762-54407781 | Msa0258190:CDS | 30.0% | |
| GAAAATGAGTTAGGAGAATT+TGG | - | chr2_2:54406229-54406248 | None:intergenic | 30.0% | |
| AAGGAAAAGGAAAATGAGTT+AGG | - | chr2_2:54406238-54406257 | None:intergenic | 30.0% | |
| !!! | TGCTTTTTTGAAAGAATGGA+GGG | - | chr2_2:54406290-54406309 | None:intergenic | 30.0% |
| !!! | TTGCTTTTTTGAAAGAATGG+AGG | - | chr2_2:54406291-54406310 | None:intergenic | 30.0% |
| CATCTTCATAGTTGAAATCA+TGG | + | chr2_2:54406328-54406347 | Msa0258190:exon | 30.0% | |
| AGATTATAAGTACCTTTCCT+TGG | - | chr2_2:54406394-54406413 | None:intergenic | 30.0% | |
| ATTGCATAGATTATGAACCA+CGG | - | chr2_2:54406634-54406653 | None:intergenic | 30.0% | |
| CTTTATTGTTATGCAGTCAA+TGG | + | chr2_2:54406670-54406689 | Msa0258190:intron | 30.0% | |
| ATCACTTCTATACACAACTT+TGG | + | chr2_2:54406706-54406725 | Msa0258190:CDS | 30.0% | |
| ! | AAAGGAATTGACTCAAACAA+TGG | + | chr2_2:54406944-54406963 | Msa0258190:CDS | 30.0% |
| ! | TGCAAAAGTTTACCTTTTTC+AGG | - | chr2_2:54407067-54407086 | None:intergenic | 30.0% |
| ! | TGAAAAAGGTAAACTTTTGC+AGG | + | chr2_2:54407066-54407085 | Msa0258190:CDS | 30.0% |
| TGGAAGAGTAAATAGGAAAA+GGG | + | chr2_2:54407270-54407289 | Msa0258190:CDS | 30.0% | |
| CTTTGGTACTTATTCTCATT+AGG | - | chr2_2:54407319-54407338 | None:intergenic | 30.0% | |
| CTAATGAGAATAAGTACCAA+AGG | + | chr2_2:54407317-54407336 | Msa0258190:intron | 30.0% | |
| CAACGAGTTTGAGAAAATTA+CGG | + | chr2_2:54407412-54407431 | Msa0258190:intron | 30.0% | |
| !! | TTTTAGGAGACAAAGTTATG+TGG | + | chr2_2:54407702-54407721 | Msa0258190:intron | 30.0% |
| GGATTTAACTCATTGAAAGA+AGG | + | chr2_2:54407723-54407742 | Msa0258190:CDS | 30.0% | |
| ACACAAACTTTGCTTGATTT+AGG | + | chr2_2:54407762-54407781 | Msa0258190:CDS | 30.0% | |
| !! | TTTTGAAAGAATGGAGGGAA+GGG | - | chr2_2:54406285-54406304 | None:intergenic | 35.0% |
| !! | TTTTTGAAAGAATGGAGGGA+AGG | - | chr2_2:54406286-54406305 | None:intergenic | 35.0% |
| TATTGTTATGCAGTCAATGG+AGG | + | chr2_2:54406673-54406692 | Msa0258190:intron | 35.0% | |
| CAAATGTCAAAGACTTCTCT+TGG | + | chr2_2:54406844-54406863 | Msa0258190:CDS | 35.0% | |
| !!! | TTTTCAGGTAGTGGTCTATT+TGG | - | chr2_2:54407052-54407071 | None:intergenic | 35.0% |
| AATAGACCACTACCTGAAAA+AGG | + | chr2_2:54407052-54407071 | Msa0258190:CDS | 35.0% | |
| !!! | AGTTTACCTTTTTCAGGTAG+TGG | - | chr2_2:54407061-54407080 | None:intergenic | 35.0% |
| AGAAGAAGAGTTTGAAGAAG+AGG | - | chr2_2:54407109-54407128 | None:intergenic | 35.0% | |
| ACTAATGCTAATTCTCACTG+TGG | + | chr2_2:54407250-54407269 | Msa0258190:CDS | 35.0% | |
| GTGGAAGAGTAAATAGGAAA+AGG | + | chr2_2:54407269-54407288 | Msa0258190:CDS | 35.0% | |
| !!! | TATAGCGTTTTTTGATCGGT+AGG | + | chr2_2:54407583-54407602 | Msa0258190:intron | 35.0% |
| !! | GGTAGTGGTATGTTTGTTTT+AGG | + | chr2_2:54407686-54407705 | Msa0258190:intron | 35.0% |
| AGCAAAAGTAGAATGTGAAG+AGG | - | chr2_2:54407813-54407832 | None:intergenic | 35.0% | |
| !! | TTTTGAAAGAATGGAGGGAA+GGG | - | chr2_2:54406285-54406304 | None:intergenic | 35.0% |
| !! | TTTTTGAAAGAATGGAGGGA+AGG | - | chr2_2:54406286-54406305 | None:intergenic | 35.0% |
| TATTGTTATGCAGTCAATGG+AGG | + | chr2_2:54406673-54406692 | Msa0258190:intron | 35.0% | |
| CAAATGTCAAAGACTTCTCT+TGG | + | chr2_2:54406844-54406863 | Msa0258190:CDS | 35.0% | |
| !!! | TTTTCAGGTAGTGGTCTATT+TGG | - | chr2_2:54407052-54407071 | None:intergenic | 35.0% |
| AATAGACCACTACCTGAAAA+AGG | + | chr2_2:54407052-54407071 | Msa0258190:CDS | 35.0% | |
| !!! | AGTTTACCTTTTTCAGGTAG+TGG | - | chr2_2:54407061-54407080 | None:intergenic | 35.0% |
| AGAAGAAGAGTTTGAAGAAG+AGG | - | chr2_2:54407109-54407128 | None:intergenic | 35.0% | |
| ACTAATGCTAATTCTCACTG+TGG | + | chr2_2:54407250-54407269 | Msa0258190:CDS | 35.0% | |
| GTGGAAGAGTAAATAGGAAA+AGG | + | chr2_2:54407269-54407288 | Msa0258190:CDS | 35.0% | |
| !!! | TATAGCGTTTTTTGATCGGT+AGG | + | chr2_2:54407583-54407602 | Msa0258190:intron | 35.0% |
| !! | GGTAGTGGTATGTTTGTTTT+AGG | + | chr2_2:54407686-54407705 | Msa0258190:intron | 35.0% |
| AGCAAAAGTAGAATGTGAAG+AGG | - | chr2_2:54407813-54407832 | None:intergenic | 35.0% | |
| ATGAGTTAGGAGAATTTGGG+TGG | - | chr2_2:54406225-54406244 | None:intergenic | 40.0% | |
| !!! | GTGGAGCATTTTGTTGTTGA+TGG | - | chr2_2:54406883-54406902 | None:intergenic | 40.0% |
| CAACAAAATGCTCCACTTTC+TGG | + | chr2_2:54406887-54406906 | Msa0258190:CDS | 40.0% | |
| ATGCTTGAAACTCCAGAAAG+TGG | - | chr2_2:54406902-54406921 | None:intergenic | 40.0% | |
| CTTCAAACTCTTCTTCTTGC+AGG | + | chr2_2:54407112-54407131 | Msa0258190:CDS | 40.0% | |
| ATCTCAAAAGACTCAAGAGG+TGG | - | chr2_2:54407166-54407185 | None:intergenic | 40.0% | |
| CTCACTGTGGAAGAGTAAAT+AGG | + | chr2_2:54407263-54407282 | Msa0258190:CDS | 40.0% | |
| ATCAATGAAGTACGACCCTT+TGG | - | chr2_2:54407336-54407355 | None:intergenic | 40.0% | |
| TGATCGGTAGGAATTGAACT+CGG | + | chr2_2:54407595-54407614 | Msa0258190:intron | 40.0% | |
| AGGAATTGAACTCGGTACTT+TGG | + | chr2_2:54407603-54407622 | Msa0258190:intron | 40.0% | |
| TATCTGACTGTCGTAAACTC+CGG | - | chr2_2:54407632-54407651 | None:intergenic | 40.0% | |
| ATGAGTTAGGAGAATTTGGG+TGG | - | chr2_2:54406225-54406244 | None:intergenic | 40.0% | |
| !!! | GTGGAGCATTTTGTTGTTGA+TGG | - | chr2_2:54406883-54406902 | None:intergenic | 40.0% |
| CAACAAAATGCTCCACTTTC+TGG | + | chr2_2:54406887-54406906 | Msa0258190:CDS | 40.0% | |
| ATGCTTGAAACTCCAGAAAG+TGG | - | chr2_2:54406902-54406921 | None:intergenic | 40.0% | |
| CTTCAAACTCTTCTTCTTGC+AGG | + | chr2_2:54407112-54407131 | Msa0258190:CDS | 40.0% | |
| ATCTCAAAAGACTCAAGAGG+TGG | - | chr2_2:54407166-54407185 | None:intergenic | 40.0% | |
| CTCACTGTGGAAGAGTAAAT+AGG | + | chr2_2:54407263-54407282 | Msa0258190:CDS | 40.0% | |
| ATCAATGAAGTACGACCCTT+TGG | - | chr2_2:54407336-54407355 | None:intergenic | 40.0% | |
| TGATCGGTAGGAATTGAACT+CGG | + | chr2_2:54407595-54407614 | Msa0258190:intron | 40.0% | |
| AGGAATTGAACTCGGTACTT+TGG | + | chr2_2:54407603-54407622 | Msa0258190:intron | 40.0% | |
| TATCTGACTGTCGTAAACTC+CGG | - | chr2_2:54407632-54407651 | None:intergenic | 40.0% | |
| ! | AGAATTTGGGTGGAGGTACA+AGG | - | chr2_2:54406215-54406234 | None:intergenic | 45.0% |
| AGTTAGGAGAATTTGGGTGG+AGG | - | chr2_2:54406222-54406241 | None:intergenic | 45.0% | |
| AATTGGGCTTACTTCTGCCA+AGG | + | chr2_2:54406374-54406393 | Msa0258190:CDS | 45.0% | |
| ATGAAGCACGGATACGAACA+CGG | + | chr2_2:54406457-54406476 | Msa0258190:intron | 45.0% | |
| ! | TATATGTGTCGGCATCGTGT+CGG | + | chr2_2:54406554-54406573 | Msa0258190:intron | 45.0% |
| TTAGACGTGTGTCCTGTTGT+CGG | - | chr2_2:54406599-54406618 | None:intergenic | 45.0% | |
| TATGAACCACGGACACTCTT+CGG | - | chr2_2:54406623-54406642 | None:intergenic | 45.0% | |
| TGCAGTCAATGGAGGATTTG+AGG | + | chr2_2:54406681-54406700 | Msa0258190:intron | 45.0% | |
| TCAAAAGACTCAAGAGGTGG+AGG | - | chr2_2:54407163-54407182 | None:intergenic | 45.0% | |
| GGGATCTCAAAAGACTCAAG+AGG | - | chr2_2:54407169-54407188 | None:intergenic | 45.0% | |
| TCCTAGGTATAGAGACAGGT+GGG | - | chr2_2:54407189-54407208 | None:intergenic | 45.0% | |
| ATCCTAGGTATAGAGACAGG+TGG | - | chr2_2:54407190-54407209 | None:intergenic | 45.0% | |
| AGGATCCTAGGTATAGAGAC+AGG | - | chr2_2:54407193-54407212 | None:intergenic | 45.0% | |
| GAATCTTGATGGAGGATCCT+AGG | - | chr2_2:54407205-54407224 | None:intergenic | 45.0% | |
| ! | AGAATTTGGGTGGAGGTACA+AGG | - | chr2_2:54406215-54406234 | None:intergenic | 45.0% |
| AGTTAGGAGAATTTGGGTGG+AGG | - | chr2_2:54406222-54406241 | None:intergenic | 45.0% | |
| AATTGGGCTTACTTCTGCCA+AGG | + | chr2_2:54406374-54406393 | Msa0258190:CDS | 45.0% | |
| ATGAAGCACGGATACGAACA+CGG | + | chr2_2:54406457-54406476 | Msa0258190:intron | 45.0% | |
| ! | TATATGTGTCGGCATCGTGT+CGG | + | chr2_2:54406554-54406573 | Msa0258190:intron | 45.0% |
| TTAGACGTGTGTCCTGTTGT+CGG | - | chr2_2:54406599-54406618 | None:intergenic | 45.0% | |
| TATGAACCACGGACACTCTT+CGG | - | chr2_2:54406623-54406642 | None:intergenic | 45.0% | |
| TGCAGTCAATGGAGGATTTG+AGG | + | chr2_2:54406681-54406700 | Msa0258190:intron | 45.0% | |
| TCAAAAGACTCAAGAGGTGG+AGG | - | chr2_2:54407163-54407182 | None:intergenic | 45.0% | |
| GGGATCTCAAAAGACTCAAG+AGG | - | chr2_2:54407169-54407188 | None:intergenic | 45.0% | |
| TCCTAGGTATAGAGACAGGT+GGG | - | chr2_2:54407189-54407208 | None:intergenic | 45.0% | |
| ATCCTAGGTATAGAGACAGG+TGG | - | chr2_2:54407190-54407209 | None:intergenic | 45.0% | |
| AGGATCCTAGGTATAGAGAC+AGG | - | chr2_2:54407193-54407212 | None:intergenic | 45.0% | |
| GAATCTTGATGGAGGATCCT+AGG | - | chr2_2:54407205-54407224 | None:intergenic | 45.0% | |
| !!! | TTTTTAATTTAGTAAATATT+TGG | + | chr2_2:54407384-54407403 | Msa0258190:intron | 5.0% |
| !!! | TTTTTAATTTAGTAAATATT+TGG | + | chr2_2:54407384-54407403 | Msa0258190:intron | 5.0% |
| GTGAGTGGGAGAGAAGGAAA+AGG | - | chr2_2:54406251-54406270 | None:intergenic | 50.0% | |
| ! | GGGAAAGAGAGAGTGTGAGT+GGG | - | chr2_2:54406265-54406284 | None:intergenic | 50.0% |
| ! | AGGGAAAGAGAGAGTGTGAG+TGG | - | chr2_2:54406266-54406285 | None:intergenic | 50.0% |
| GGCTTACTTCTGCCAAGGAA+AGG | + | chr2_2:54406379-54406398 | Msa0258190:CDS | 50.0% | |
| CATGACACGTATCCGACAAC+AGG | + | chr2_2:54406584-54406603 | Msa0258190:intron | 50.0% | |
| !! | TCTAATCCGAAGAGTGTCCG+TGG | + | chr2_2:54406614-54406633 | Msa0258190:intron | 50.0% |
| TTGCAGGCAGTGATGAAAGC+TGG | + | chr2_2:54407082-54407101 | Msa0258190:CDS | 50.0% | |
| TTGCAGGACCACTTCCTCAA+TGG | + | chr2_2:54407128-54407147 | Msa0258190:CDS | 50.0% | |
| GGGTGTTTCCATTGAGGAAG+TGG | - | chr2_2:54407139-54407158 | None:intergenic | 50.0% | |
| AAGACTCAAGAGGTGGAGGA+GGG | - | chr2_2:54407159-54407178 | None:intergenic | 50.0% | |
| AAAGACTCAAGAGGTGGAGG+AGG | - | chr2_2:54407160-54407179 | None:intergenic | 50.0% | |
| TCCCACCTGTCTCTATACCT+AGG | + | chr2_2:54407185-54407204 | Msa0258190:CDS | 50.0% | |
| !! | GAACTCGGTACTTTGGAGTC+CGG | + | chr2_2:54407610-54407629 | Msa0258190:intron | 50.0% |
| GTGAGTGGGAGAGAAGGAAA+AGG | - | chr2_2:54406251-54406270 | None:intergenic | 50.0% | |
| ! | GGGAAAGAGAGAGTGTGAGT+GGG | - | chr2_2:54406265-54406284 | None:intergenic | 50.0% |
| ! | AGGGAAAGAGAGAGTGTGAG+TGG | - | chr2_2:54406266-54406285 | None:intergenic | 50.0% |
| GGCTTACTTCTGCCAAGGAA+AGG | + | chr2_2:54406379-54406398 | Msa0258190:CDS | 50.0% | |
| CATGACACGTATCCGACAAC+AGG | + | chr2_2:54406584-54406603 | Msa0258190:intron | 50.0% | |
| !! | TCTAATCCGAAGAGTGTCCG+TGG | + | chr2_2:54406614-54406633 | Msa0258190:intron | 50.0% |
| TTGCAGGCAGTGATGAAAGC+TGG | + | chr2_2:54407082-54407101 | Msa0258190:CDS | 50.0% | |
| TTGCAGGACCACTTCCTCAA+TGG | + | chr2_2:54407128-54407147 | Msa0258190:CDS | 50.0% | |
| GGGTGTTTCCATTGAGGAAG+TGG | - | chr2_2:54407139-54407158 | None:intergenic | 50.0% | |
| AAGACTCAAGAGGTGGAGGA+GGG | - | chr2_2:54407159-54407178 | None:intergenic | 50.0% | |
| AAAGACTCAAGAGGTGGAGG+AGG | - | chr2_2:54407160-54407179 | None:intergenic | 50.0% | |
| TCCCACCTGTCTCTATACCT+AGG | + | chr2_2:54407185-54407204 | Msa0258190:CDS | 50.0% | |
| !! | GAACTCGGTACTTTGGAGTC+CGG | + | chr2_2:54407610-54407629 | Msa0258190:intron | 50.0% |
| ! | GAGAGTGTGAGTGGGAGAGA+AGG | - | chr2_2:54406257-54406276 | None:intergenic | 55.0% |
| ACGGATACGAACACGGACAC+CGG | + | chr2_2:54406464-54406483 | Msa0258190:intron | 55.0% | |
| GTCAGTGTCTGTGTCGTGTC+CGG | - | chr2_2:54406486-54406505 | None:intergenic | 55.0% | |
| !! | GGAGGAGGGTGTTTCCATTG+AGG | - | chr2_2:54407145-54407164 | None:intergenic | 55.0% |
| ! | GAGAGTGTGAGTGGGAGAGA+AGG | - | chr2_2:54406257-54406276 | None:intergenic | 55.0% |
| ACGGATACGAACACGGACAC+CGG | + | chr2_2:54406464-54406483 | Msa0258190:intron | 55.0% | |
| GTCAGTGTCTGTGTCGTGTC+CGG | - | chr2_2:54406486-54406505 | None:intergenic | 55.0% | |
| !! | GGAGGAGGGTGTTTCCATTG+AGG | - | chr2_2:54407145-54407164 | None:intergenic | 55.0% |
| ! | TGTCGGCATCGTGTCGGTGT+CGG | + | chr2_2:54406560-54406579 | Msa0258190:intron | 60.0% |
| CCAACCAGCTGCGCTAGACT+CGG | + | chr2_2:54407661-54407680 | Msa0258190:intron | 60.0% | |
| CAACCAGCTGCGCTAGACTC+GGG | + | chr2_2:54407662-54407681 | Msa0258190:intron | 60.0% | |
| ! | TGTCGGCATCGTGTCGGTGT+CGG | + | chr2_2:54406560-54406579 | Msa0258190:intron | 60.0% |
| CCAACCAGCTGCGCTAGACT+CGG | + | chr2_2:54407661-54407680 | Msa0258190:intron | 60.0% | |
| CAACCAGCTGCGCTAGACTC+GGG | + | chr2_2:54407662-54407681 | Msa0258190:intron | 60.0% | |
| CCGAGTCTAGCGCAGCTGGT+TGG | - | chr2_2:54407664-54407683 | None:intergenic | 65.0% | |
| GCGCTAGACTCGGGTGGTAG+TGG | + | chr2_2:54407671-54407690 | Msa0258190:intron | 65.0% | |
| CCGAGTCTAGCGCAGCTGGT+TGG | - | chr2_2:54407664-54407683 | None:intergenic | 65.0% | |
| GCGCTAGACTCGGGTGGTAG+TGG | + | chr2_2:54407671-54407690 | Msa0258190:intron | 65.0% | |
| CCACCCGAGTCTAGCGCAGC+TGG | - | chr2_2:54407668-54407687 | None:intergenic | 70.0% | |
| CCAGCTGCGCTAGACTCGGG+TGG | + | chr2_2:54407665-54407684 | Msa0258190:intron | 70.0% | |
| CCACCCGAGTCTAGCGCAGC+TGG | - | chr2_2:54407668-54407687 | None:intergenic | 70.0% | |
| CCAGCTGCGCTAGACTCGGG+TGG | + | chr2_2:54407665-54407684 | Msa0258190:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 54406189 | 54407878 | 54406189 | ID=Msa0258190;Name=Msa0258190 |
| chr2_2 | mRNA | 54406189 | 54407878 | 54406189 | ID=Msa0258190-mRNA-1;Parent=Msa0258190;Name=Msa0258190-mRNA-1;_AED=0.23;_eAED=0.23;_QI=158|0.5|0.33|1|1|1|3|0|276 |
| chr2_2 | exon | 54406189 | 54406400 | 54406189 | ID=Msa0258190-mRNA-1:exon:16361;Parent=Msa0258190-mRNA-1 |
| chr2_2 | exon | 54406686 | 54407291 | 54406686 | ID=Msa0258190-mRNA-1:exon:16362;Parent=Msa0258190-mRNA-1 |
| chr2_2 | exon | 54407708 | 54407878 | 54407708 | ID=Msa0258190-mRNA-1:exon:16363;Parent=Msa0258190-mRNA-1 |
| chr2_2 | five_prime_UTR | 54406189 | 54406346 | 54406189 | ID=Msa0258190-mRNA-1:five_prime_utr;Parent=Msa0258190-mRNA-1 |
| chr2_2 | CDS | 54406347 | 54406400 | 54406347 | ID=Msa0258190-mRNA-1:cds;Parent=Msa0258190-mRNA-1 |
| chr2_2 | CDS | 54406686 | 54407291 | 54406686 | ID=Msa0258190-mRNA-1:cds;Parent=Msa0258190-mRNA-1 |
| chr2_2 | CDS | 54407708 | 54407878 | 54407708 | ID=Msa0258190-mRNA-1:cds;Parent=Msa0258190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
