Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297010 | XP_013464838.1 | 96.203 | 237 | 9 | 0 | 1 | 237 | 1 | 237 | 1.17e-165 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297010 | A0A072VBV9 | 96.203 | 237 | 9 | 0 | 1 | 237 | 1 | 237 | 5.60e-166 | 469 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0218110 | Msa0297010 | 0.847535 | 1.087238e-59 | -8.615850e-47 |
| Msa0219370 | Msa0297010 | 0.847517 | 1.100333e-59 | -8.615850e-47 |
| Msa0258190 | Msa0297010 | 0.847706 | 9.759882e-60 | -8.615850e-47 |
| Msa0297010 | Msa1073490 | 0.803518 | 3.356094e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297010 | MtrunA17_Chr2g0320271 | 96.203 | 237 | 9 | 0 | 1 | 237 | 1 | 237 | 1.08e-169 | 469 |
| Msa0297010 | MtrunA17_Chr4g0028161 | 63.492 | 252 | 75 | 8 | 1 | 237 | 1 | 250 | 3.90e-98 | 288 |
| Msa0297010 | MtrunA17_Chr1g0197151 | 50.276 | 181 | 71 | 5 | 7 | 185 | 6 | 169 | 1.13e-46 | 156 |
| Msa0297010 | MtrunA17_Chr2g0327801 | 34.419 | 215 | 84 | 11 | 14 | 190 | 9 | 204 | 1.66e-19 | 85.9 |
| Msa0297010 | MtrunA17_Chr4g0030841 | 31.250 | 240 | 106 | 8 | 14 | 207 | 8 | 234 | 6.53e-19 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297010 | AT5G22930.1 | 52.941 | 255 | 82 | 6 | 1 | 237 | 1 | 235 | 3.15e-81 | 245 |
| Msa0297010 | AT3G44940.1 | 50.579 | 259 | 91 | 4 | 3 | 237 | 2 | 247 | 9.24e-72 | 222 |
| Msa0297010 | AT2G28140.1 | 51.452 | 241 | 74 | 10 | 4 | 237 | 5 | 209 | 1.26e-58 | 187 |
| Msa0297010 | AT2G28690.1 | 37.000 | 200 | 90 | 5 | 11 | 189 | 8 | 192 | 1.80e-28 | 109 |
| Msa0297010 | AT5G59760.1 | 33.508 | 191 | 109 | 5 | 10 | 190 | 8 | 190 | 2.54e-20 | 87.8 |
Find 53 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTAACTCTCTTCTTAAT+TGG | 0.059847 | 2_3:+50615731 | Msa0297010:CDS |
| GAAAATGAGTTAGGAGAATT+TGG | 0.137304 | 2_3:-50615600 | None:intergenic |
| TGTTGTTGATTAGATCTTTA+AGG | 0.168436 | 2_3:-50616173 | None:intergenic |
| ACACAAACTTTGCTTGATTT+AGG | 0.216354 | 2_3:+50617142 | Msa0297010:CDS |
| CTTCAAACTCTTCTTCTTGC+AGG | 0.246829 | 2_3:+50616492 | Msa0297010:CDS |
| CAACAAAATGCTCCACTTTC+CGG | 0.255273 | 2_3:+50616267 | Msa0297010:CDS |
| ATCATTGATTGATCAATAAC+TGG | 0.326107 | 2_3:-50616393 | None:intergenic |
| ATCTAACTCTCTTCTTAATT+GGG | 0.334531 | 2_3:+50615732 | Msa0297010:CDS |
| CTTTGGTACTTATTCTCATT+AGG | 0.335523 | 2_3:-50616696 | None:intergenic |
| AATAGACCACTACCTGAAAA+AGG | 0.345008 | 2_3:+50616432 | Msa0297010:CDS |
| CTCACTGTGGAAGAGTAAAT+AGG | 0.378934 | 2_3:+50616643 | Msa0297010:CDS |
| CATCTTCATAGTTGAAATCA+TGG | 0.391848 | 2_3:+50615702 | Msa0297010:exon |
| AAGGAAAAGGAAAATGAGTT+AGG | 0.406213 | 2_3:-50615609 | None:intergenic |
| GTGGAAGAGTAAATAGGAAA+AGG | 0.416196 | 2_3:+50616649 | Msa0297010:CDS |
| CAAATGTCAAAGACTTCTCT+TGG | 0.417648 | 2_3:+50616224 | Msa0297010:CDS |
| GATGAACCAATTACAAGAAA+AGG | 0.425567 | 2_3:+50616306 | Msa0297010:CDS |
| TTGCAGGACCACTTCCTCAA+TGG | 0.430493 | 2_3:+50616508 | Msa0297010:CDS |
| AAAATGAGTTAGGAGAATTT+GGG | 0.431400 | 2_3:-50615599 | None:intergenic |
| GAGAGTGTGAGTGGGAGAGA+AGG | 0.436158 | 2_3:-50615628 | None:intergenic |
| ATCTTCAATGCTTGAAACTC+CGG | 0.441450 | 2_3:-50616286 | None:intergenic |
| GGGTGTTTCCATTGAGGAAG+TGG | 0.468433 | 2_3:-50616516 | None:intergenic |
| TGGAAGAGTAAATAGGAAAA+GGG | 0.473459 | 2_3:+50616650 | Msa0297010:CDS |
| GTGAGTGGGAGAGAAGGAAA+AGG | 0.479057 | 2_3:-50615622 | None:intergenic |
| ATCAATGAAGTACAACCCTT+TGG | 0.485981 | 2_3:-50616713 | None:intergenic |
| GAATCTTGATGGAGGATCCT+AGG | 0.488623 | 2_3:-50616582 | None:intergenic |
| AGAAGAAGAGTTTGAAGAAG+AGG | 0.488907 | 2_3:-50616486 | None:intergenic |
| AGGGAAAGAGAGAGTGTGAG+TGG | 0.499976 | 2_3:-50615637 | None:intergenic |
| AGATTATAAGTACCTTTCCT+TGG | 0.516487 | 2_3:-50615765 | None:intergenic |
| AGTTAGGAGAATTTGGGTGG+AGG | 0.521579 | 2_3:-50615593 | None:intergenic |
| AAAGGAATTGACTCAAACAA+TGG | 0.525642 | 2_3:+50616324 | Msa0297010:CDS |
| GGAGGAGGGTGTTTCCATTG+AGG | 0.528643 | 2_3:-50616522 | None:intergenic |
| TTGCAGGCAGTGATGAAAGC+TGG | 0.529664 | 2_3:+50616462 | Msa0297010:CDS |
| GGGAAAGAGAGAGTGTGAGT+GGG | 0.539104 | 2_3:-50615636 | None:intergenic |
| AAAGACTCAAGAGGTGGAGG+AGG | 0.539125 | 2_3:-50616537 | None:intergenic |
| ATGCTTGAAACTCCGGAAAG+TGG | 0.540042 | 2_3:-50616279 | None:intergenic |
| GGATTTAACTCATTGAAAGA+AGG | 0.544860 | 2_3:+50617103 | Msa0297010:CDS |
| AGAATTTGGGTGGAGGTACA+AGG | 0.546342 | 2_3:-50615586 | None:intergenic |
| GGCTTACTTCTGCCAAGGAA+AGG | 0.551033 | 2_3:+50615753 | Msa0297010:CDS |
| AATTGGGCTTACTTCTGCCA+AGG | 0.555631 | 2_3:+50615748 | Msa0297010:CDS |
| TCAAAAGACTCAAGAGGTGG+AGG | 0.564067 | 2_3:-50616540 | None:intergenic |
| CTAATGAGAATAAGTACCAA+AGG | 0.565224 | 2_3:+50616697 | Msa0297010:CDS |
| TAATGAGAATAAGTACCAAA+GGG | 0.572125 | 2_3:+50616698 | Msa0297010:CDS |
| ATGAGTTAGGAGAATTTGGG+TGG | 0.591697 | 2_3:-50615596 | None:intergenic |
| AATTGTTATGCAGTCAATGG+AGG | 0.594697 | 2_3:+50616053 | Msa0297010:intron |
| ATCTCAAAAGACTCAAGAGG+TGG | 0.604562 | 2_3:-50616543 | None:intergenic |
| AGCAAAAGTAGAATGTGAAG+AGG | 0.606333 | 2_3:-50617190 | None:intergenic |
| AGGATCCTAGGTATAGAGAC+AGG | 0.607052 | 2_3:-50616570 | None:intergenic |
| TCCTAGGTATAGAGACAGGT+GGG | 0.627743 | 2_3:-50616566 | None:intergenic |
| AAGACTCAAGAGGTGGAGGA+GGG | 0.640632 | 2_3:-50616536 | None:intergenic |
| ATCCTAGGTATAGAGACAGG+TGG | 0.649328 | 2_3:-50616567 | None:intergenic |
| GGGATCTCAAAAGACTCAAG+AGG | 0.652928 | 2_3:-50616546 | None:intergenic |
| TCCCACCTGTCTCTATACCT+AGG | 0.661572 | 2_3:+50616565 | Msa0297010:CDS |
| ACTAATGCTAATTCTCACTG+TGG | 0.712843 | 2_3:+50616630 | Msa0297010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGCTTTTTTGAAAGAA+TGG | - | chr2_3:50615668-50615687 | None:intergenic | 20.0% |
| !! | TACTAAAAATTGAATCTTGA+TGG | - | chr2_3:50616596-50616615 | None:intergenic | 20.0% |
| !! | CCTATTATCTTGAAAATATT+TGG | - | chr2_3:50616905-50616924 | None:intergenic | 20.0% |
| !!! | CCAAATATTTTCAAGATAAT+AGG | + | chr2_3:50616902-50616921 | Msa0297010:intron | 20.0% |
| !!! | TCAAGATAATAGGATTTTTA+AGG | + | chr2_3:50616912-50616931 | Msa0297010:intron | 20.0% |
| !!! | TATTTGCTTTTTTGAAAGAA+TGG | - | chr2_3:50615668-50615687 | None:intergenic | 20.0% |
| !! | TACTAAAAATTGAATCTTGA+TGG | - | chr2_3:50616596-50616615 | None:intergenic | 20.0% |
| !! | CCTATTATCTTGAAAATATT+TGG | - | chr2_3:50616905-50616924 | None:intergenic | 20.0% |
| !!! | CCAAATATTTTCAAGATAAT+AGG | + | chr2_3:50616902-50616921 | Msa0297010:intron | 20.0% |
| !!! | TCAAGATAATAGGATTTTTA+AGG | + | chr2_3:50616912-50616931 | Msa0297010:intron | 20.0% |
| ! | AAAATGAGTTAGGAGAATTT+GGG | - | chr2_3:50615602-50615621 | None:intergenic | 25.0% |
| ! | AATCTAACTCTCTTCTTAAT+TGG | + | chr2_3:50615731-50615750 | Msa0297010:CDS | 25.0% |
| ! | ATCTAACTCTCTTCTTAATT+GGG | + | chr2_3:50615732-50615751 | Msa0297010:CDS | 25.0% |
| ! | TTATGAATGGAAATAGTTGA+AGG | - | chr2_3:50615795-50615814 | None:intergenic | 25.0% |
| ! | AGTAAAACAAGCATTATGAA+TGG | - | chr2_3:50615808-50615827 | None:intergenic | 25.0% |
| !! | TGTTGTTGATTAGATCTTTA+AGG | - | chr2_3:50616176-50616195 | None:intergenic | 25.0% |
| !! | TCAATTCCTTTTCTTGTAAT+TGG | - | chr2_3:50616315-50616334 | None:intergenic | 25.0% |
| !! | ATCATTGATTGATCAATAAC+TGG | - | chr2_3:50616396-50616415 | None:intergenic | 25.0% |
| ! | TAAAAATTGAATCTTGATGG+AGG | - | chr2_3:50616593-50616612 | None:intergenic | 25.0% |
| ! | TAATGAGAATAAGTACCAAA+GGG | + | chr2_3:50616698-50616717 | Msa0297010:CDS | 25.0% |
| !! | TGATTTTGCTAAGTTTCAAA+CGG | - | chr2_3:50616846-50616865 | None:intergenic | 25.0% |
| !! | TTTGAAACTTAGCAAAATCA+CGG | + | chr2_3:50616846-50616865 | Msa0297010:intron | 25.0% |
| !!! | AATAGGATTTTTAAGGTTAG+TGG | + | chr2_3:50616919-50616938 | Msa0297010:intron | 25.0% |
| !!! | TATGTATAGCGTTTTTTGAT+CGG | + | chr2_3:50616959-50616978 | Msa0297010:intron | 25.0% |
| !! | TGCTTGATTTAGGAAATTTT+AGG | + | chr2_3:50617152-50617171 | Msa0297010:CDS | 25.0% |
| !! | GCTTGATTTAGGAAATTTTA+GGG | + | chr2_3:50617153-50617172 | Msa0297010:CDS | 25.0% |
| ! | AAAATGAGTTAGGAGAATTT+GGG | - | chr2_3:50615602-50615621 | None:intergenic | 25.0% |
| ! | AATCTAACTCTCTTCTTAAT+TGG | + | chr2_3:50615731-50615750 | Msa0297010:CDS | 25.0% |
| ! | ATCTAACTCTCTTCTTAATT+GGG | + | chr2_3:50615732-50615751 | Msa0297010:CDS | 25.0% |
| ! | TTATGAATGGAAATAGTTGA+AGG | - | chr2_3:50615795-50615814 | None:intergenic | 25.0% |
| ! | AGTAAAACAAGCATTATGAA+TGG | - | chr2_3:50615808-50615827 | None:intergenic | 25.0% |
| !! | TGTTGTTGATTAGATCTTTA+AGG | - | chr2_3:50616176-50616195 | None:intergenic | 25.0% |
| !! | TCAATTCCTTTTCTTGTAAT+TGG | - | chr2_3:50616315-50616334 | None:intergenic | 25.0% |
| !! | ATCATTGATTGATCAATAAC+TGG | - | chr2_3:50616396-50616415 | None:intergenic | 25.0% |
| ! | TAAAAATTGAATCTTGATGG+AGG | - | chr2_3:50616593-50616612 | None:intergenic | 25.0% |
| ! | TAATGAGAATAAGTACCAAA+GGG | + | chr2_3:50616698-50616717 | Msa0297010:CDS | 25.0% |
| !! | TGATTTTGCTAAGTTTCAAA+CGG | - | chr2_3:50616846-50616865 | None:intergenic | 25.0% |
| !! | TTTGAAACTTAGCAAAATCA+CGG | + | chr2_3:50616846-50616865 | Msa0297010:intron | 25.0% |
| !!! | AATAGGATTTTTAAGGTTAG+TGG | + | chr2_3:50616919-50616938 | Msa0297010:intron | 25.0% |
| !!! | TATGTATAGCGTTTTTTGAT+CGG | + | chr2_3:50616959-50616978 | Msa0297010:intron | 25.0% |
| !! | TGCTTGATTTAGGAAATTTT+AGG | + | chr2_3:50617152-50617171 | Msa0297010:CDS | 25.0% |
| !! | GCTTGATTTAGGAAATTTTA+GGG | + | chr2_3:50617153-50617172 | Msa0297010:CDS | 25.0% |
| GAAAATGAGTTAGGAGAATT+TGG | - | chr2_3:50615603-50615622 | None:intergenic | 30.0% | |
| AAGGAAAAGGAAAATGAGTT+AGG | - | chr2_3:50615612-50615631 | None:intergenic | 30.0% | |
| !!! | TGCTTTTTTGAAAGAATGGA+GGG | - | chr2_3:50615664-50615683 | None:intergenic | 30.0% |
| !!! | TTGCTTTTTTGAAAGAATGG+AGG | - | chr2_3:50615665-50615684 | None:intergenic | 30.0% |
| CATCTTCATAGTTGAAATCA+TGG | + | chr2_3:50615702-50615721 | Msa0297010:exon | 30.0% | |
| AGATTATAAGTACCTTTCCT+TGG | - | chr2_3:50615768-50615787 | None:intergenic | 30.0% | |
| TCTCAAAATATTAGCAGTGT+CGG | - | chr2_3:50615886-50615905 | None:intergenic | 30.0% | |
| CTTAATTGTTATGCAGTCAA+TGG | + | chr2_3:50616050-50616069 | Msa0297010:intron | 30.0% | |
| GATGAACCAATTACAAGAAA+AGG | + | chr2_3:50616306-50616325 | Msa0297010:CDS | 30.0% | |
| ! | AAAGGAATTGACTCAAACAA+TGG | + | chr2_3:50616324-50616343 | Msa0297010:CDS | 30.0% |
| ! | TGCAAAAGTTTACCTTTTTC+AGG | - | chr2_3:50616447-50616466 | None:intergenic | 30.0% |
| ! | TGAAAAAGGTAAACTTTTGC+AGG | + | chr2_3:50616446-50616465 | Msa0297010:CDS | 30.0% |
| TGGAAGAGTAAATAGGAAAA+GGG | + | chr2_3:50616650-50616669 | Msa0297010:CDS | 30.0% | |
| CTTTGGTACTTATTCTCATT+AGG | - | chr2_3:50616699-50616718 | None:intergenic | 30.0% | |
| CTAATGAGAATAAGTACCAA+AGG | + | chr2_3:50616697-50616716 | Msa0297010:CDS | 30.0% | |
| CAACGAGTTTGAGAAAATTA+CGG | + | chr2_3:50616792-50616811 | Msa0297010:intron | 30.0% | |
| !! | TTTTAGGAGACAAAGTTATG+TGG | + | chr2_3:50617082-50617101 | Msa0297010:intron | 30.0% |
| GGATTTAACTCATTGAAAGA+AGG | + | chr2_3:50617103-50617122 | Msa0297010:CDS | 30.0% | |
| ACACAAACTTTGCTTGATTT+AGG | + | chr2_3:50617142-50617161 | Msa0297010:CDS | 30.0% | |
| GAAAATGAGTTAGGAGAATT+TGG | - | chr2_3:50615603-50615622 | None:intergenic | 30.0% | |
| AAGGAAAAGGAAAATGAGTT+AGG | - | chr2_3:50615612-50615631 | None:intergenic | 30.0% | |
| !!! | TGCTTTTTTGAAAGAATGGA+GGG | - | chr2_3:50615664-50615683 | None:intergenic | 30.0% |
| !!! | TTGCTTTTTTGAAAGAATGG+AGG | - | chr2_3:50615665-50615684 | None:intergenic | 30.0% |
| CATCTTCATAGTTGAAATCA+TGG | + | chr2_3:50615702-50615721 | Msa0297010:exon | 30.0% | |
| AGATTATAAGTACCTTTCCT+TGG | - | chr2_3:50615768-50615787 | None:intergenic | 30.0% | |
| TCTCAAAATATTAGCAGTGT+CGG | - | chr2_3:50615886-50615905 | None:intergenic | 30.0% | |
| CTTAATTGTTATGCAGTCAA+TGG | + | chr2_3:50616050-50616069 | Msa0297010:intron | 30.0% | |
| GATGAACCAATTACAAGAAA+AGG | + | chr2_3:50616306-50616325 | Msa0297010:CDS | 30.0% | |
| ! | AAAGGAATTGACTCAAACAA+TGG | + | chr2_3:50616324-50616343 | Msa0297010:CDS | 30.0% |
| ! | TGCAAAAGTTTACCTTTTTC+AGG | - | chr2_3:50616447-50616466 | None:intergenic | 30.0% |
| ! | TGAAAAAGGTAAACTTTTGC+AGG | + | chr2_3:50616446-50616465 | Msa0297010:CDS | 30.0% |
| TGGAAGAGTAAATAGGAAAA+GGG | + | chr2_3:50616650-50616669 | Msa0297010:CDS | 30.0% | |
| CTTTGGTACTTATTCTCATT+AGG | - | chr2_3:50616699-50616718 | None:intergenic | 30.0% | |
| CTAATGAGAATAAGTACCAA+AGG | + | chr2_3:50616697-50616716 | Msa0297010:CDS | 30.0% | |
| CAACGAGTTTGAGAAAATTA+CGG | + | chr2_3:50616792-50616811 | Msa0297010:intron | 30.0% | |
| !! | TTTTAGGAGACAAAGTTATG+TGG | + | chr2_3:50617082-50617101 | Msa0297010:intron | 30.0% |
| GGATTTAACTCATTGAAAGA+AGG | + | chr2_3:50617103-50617122 | Msa0297010:CDS | 30.0% | |
| ACACAAACTTTGCTTGATTT+AGG | + | chr2_3:50617142-50617161 | Msa0297010:CDS | 30.0% | |
| !! | TTTTGAAAGAATGGAGGGAA+GGG | - | chr2_3:50615659-50615678 | None:intergenic | 35.0% |
| !! | TTTTTGAAAGAATGGAGGGA+AGG | - | chr2_3:50615660-50615679 | None:intergenic | 35.0% |
| AATTGTTATGCAGTCAATGG+AGG | + | chr2_3:50616053-50616072 | Msa0297010:intron | 35.0% | |
| CAAATGTCAAAGACTTCTCT+TGG | + | chr2_3:50616224-50616243 | Msa0297010:CDS | 35.0% | |
| ATCTTCAATGCTTGAAACTC+CGG | - | chr2_3:50616289-50616308 | None:intergenic | 35.0% | |
| !!! | TTTTCAGGTAGTGGTCTATT+TGG | - | chr2_3:50616432-50616451 | None:intergenic | 35.0% |
| AATAGACCACTACCTGAAAA+AGG | + | chr2_3:50616432-50616451 | Msa0297010:CDS | 35.0% | |
| !!! | AGTTTACCTTTTTCAGGTAG+TGG | - | chr2_3:50616441-50616460 | None:intergenic | 35.0% |
| AGAAGAAGAGTTTGAAGAAG+AGG | - | chr2_3:50616489-50616508 | None:intergenic | 35.0% | |
| ACTAATGCTAATTCTCACTG+TGG | + | chr2_3:50616630-50616649 | Msa0297010:CDS | 35.0% | |
| GTGGAAGAGTAAATAGGAAA+AGG | + | chr2_3:50616649-50616668 | Msa0297010:CDS | 35.0% | |
| ATCAATGAAGTACAACCCTT+TGG | - | chr2_3:50616716-50616735 | None:intergenic | 35.0% | |
| !!! | TATAGCGTTTTTTGATCGGT+AGG | + | chr2_3:50616963-50616982 | Msa0297010:intron | 35.0% |
| !! | GGTAGTGGTATGTTTGTTTT+AGG | + | chr2_3:50617066-50617085 | Msa0297010:intron | 35.0% |
| AGCAAAAGTAGAATGTGAAG+AGG | - | chr2_3:50617193-50617212 | None:intergenic | 35.0% | |
| !! | TTTTGAAAGAATGGAGGGAA+GGG | - | chr2_3:50615659-50615678 | None:intergenic | 35.0% |
| !! | TTTTTGAAAGAATGGAGGGA+AGG | - | chr2_3:50615660-50615679 | None:intergenic | 35.0% |
| AATTGTTATGCAGTCAATGG+AGG | + | chr2_3:50616053-50616072 | Msa0297010:intron | 35.0% | |
| CAAATGTCAAAGACTTCTCT+TGG | + | chr2_3:50616224-50616243 | Msa0297010:CDS | 35.0% | |
| ATCTTCAATGCTTGAAACTC+CGG | - | chr2_3:50616289-50616308 | None:intergenic | 35.0% | |
| !!! | TTTTCAGGTAGTGGTCTATT+TGG | - | chr2_3:50616432-50616451 | None:intergenic | 35.0% |
| AATAGACCACTACCTGAAAA+AGG | + | chr2_3:50616432-50616451 | Msa0297010:CDS | 35.0% | |
| !!! | AGTTTACCTTTTTCAGGTAG+TGG | - | chr2_3:50616441-50616460 | None:intergenic | 35.0% |
| AGAAGAAGAGTTTGAAGAAG+AGG | - | chr2_3:50616489-50616508 | None:intergenic | 35.0% | |
| ACTAATGCTAATTCTCACTG+TGG | + | chr2_3:50616630-50616649 | Msa0297010:CDS | 35.0% | |
| GTGGAAGAGTAAATAGGAAA+AGG | + | chr2_3:50616649-50616668 | Msa0297010:CDS | 35.0% | |
| ATCAATGAAGTACAACCCTT+TGG | - | chr2_3:50616716-50616735 | None:intergenic | 35.0% | |
| !!! | TATAGCGTTTTTTGATCGGT+AGG | + | chr2_3:50616963-50616982 | Msa0297010:intron | 35.0% |
| !! | GGTAGTGGTATGTTTGTTTT+AGG | + | chr2_3:50617066-50617085 | Msa0297010:intron | 35.0% |
| AGCAAAAGTAGAATGTGAAG+AGG | - | chr2_3:50617193-50617212 | None:intergenic | 35.0% | |
| ATGAGTTAGGAGAATTTGGG+TGG | - | chr2_3:50615599-50615618 | None:intergenic | 40.0% | |
| !!! | GTGGAGCATTTTGTTGTTGA+TGG | - | chr2_3:50616263-50616282 | None:intergenic | 40.0% |
| CAACAAAATGCTCCACTTTC+CGG | + | chr2_3:50616267-50616286 | Msa0297010:CDS | 40.0% | |
| CTTCAAACTCTTCTTCTTGC+AGG | + | chr2_3:50616492-50616511 | Msa0297010:CDS | 40.0% | |
| ATCTCAAAAGACTCAAGAGG+TGG | - | chr2_3:50616546-50616565 | None:intergenic | 40.0% | |
| CTCACTGTGGAAGAGTAAAT+AGG | + | chr2_3:50616643-50616662 | Msa0297010:CDS | 40.0% | |
| TGATCGGTAGGAATTGAACT+CGG | + | chr2_3:50616975-50616994 | Msa0297010:intron | 40.0% | |
| AGGAATTGAACTCGGTACTT+TGG | + | chr2_3:50616983-50617002 | Msa0297010:intron | 40.0% | |
| TATCTGACTGTCGTAAACTC+CGG | - | chr2_3:50617012-50617031 | None:intergenic | 40.0% | |
| ATGAGTTAGGAGAATTTGGG+TGG | - | chr2_3:50615599-50615618 | None:intergenic | 40.0% | |
| !!! | GTGGAGCATTTTGTTGTTGA+TGG | - | chr2_3:50616263-50616282 | None:intergenic | 40.0% |
| CAACAAAATGCTCCACTTTC+CGG | + | chr2_3:50616267-50616286 | Msa0297010:CDS | 40.0% | |
| CTTCAAACTCTTCTTCTTGC+AGG | + | chr2_3:50616492-50616511 | Msa0297010:CDS | 40.0% | |
| ATCTCAAAAGACTCAAGAGG+TGG | - | chr2_3:50616546-50616565 | None:intergenic | 40.0% | |
| CTCACTGTGGAAGAGTAAAT+AGG | + | chr2_3:50616643-50616662 | Msa0297010:CDS | 40.0% | |
| TGATCGGTAGGAATTGAACT+CGG | + | chr2_3:50616975-50616994 | Msa0297010:intron | 40.0% | |
| AGGAATTGAACTCGGTACTT+TGG | + | chr2_3:50616983-50617002 | Msa0297010:intron | 40.0% | |
| TATCTGACTGTCGTAAACTC+CGG | - | chr2_3:50617012-50617031 | None:intergenic | 40.0% | |
| ! | AGAATTTGGGTGGAGGTACA+AGG | - | chr2_3:50615589-50615608 | None:intergenic | 45.0% |
| AGTTAGGAGAATTTGGGTGG+AGG | - | chr2_3:50615596-50615615 | None:intergenic | 45.0% | |
| AATTGGGCTTACTTCTGCCA+AGG | + | chr2_3:50615748-50615767 | Msa0297010:CDS | 45.0% | |
| ATGCTTGAAACTCCGGAAAG+TGG | - | chr2_3:50616282-50616301 | None:intergenic | 45.0% | |
| TCAAAAGACTCAAGAGGTGG+AGG | - | chr2_3:50616543-50616562 | None:intergenic | 45.0% | |
| GGGATCTCAAAAGACTCAAG+AGG | - | chr2_3:50616549-50616568 | None:intergenic | 45.0% | |
| TCCTAGGTATAGAGACAGGT+GGG | - | chr2_3:50616569-50616588 | None:intergenic | 45.0% | |
| ATCCTAGGTATAGAGACAGG+TGG | - | chr2_3:50616570-50616589 | None:intergenic | 45.0% | |
| AGGATCCTAGGTATAGAGAC+AGG | - | chr2_3:50616573-50616592 | None:intergenic | 45.0% | |
| GAATCTTGATGGAGGATCCT+AGG | - | chr2_3:50616585-50616604 | None:intergenic | 45.0% | |
| ! | AGAATTTGGGTGGAGGTACA+AGG | - | chr2_3:50615589-50615608 | None:intergenic | 45.0% |
| AGTTAGGAGAATTTGGGTGG+AGG | - | chr2_3:50615596-50615615 | None:intergenic | 45.0% | |
| AATTGGGCTTACTTCTGCCA+AGG | + | chr2_3:50615748-50615767 | Msa0297010:CDS | 45.0% | |
| ATGCTTGAAACTCCGGAAAG+TGG | - | chr2_3:50616282-50616301 | None:intergenic | 45.0% | |
| TCAAAAGACTCAAGAGGTGG+AGG | - | chr2_3:50616543-50616562 | None:intergenic | 45.0% | |
| GGGATCTCAAAAGACTCAAG+AGG | - | chr2_3:50616549-50616568 | None:intergenic | 45.0% | |
| TCCTAGGTATAGAGACAGGT+GGG | - | chr2_3:50616569-50616588 | None:intergenic | 45.0% | |
| ATCCTAGGTATAGAGACAGG+TGG | - | chr2_3:50616570-50616589 | None:intergenic | 45.0% | |
| AGGATCCTAGGTATAGAGAC+AGG | - | chr2_3:50616573-50616592 | None:intergenic | 45.0% | |
| GAATCTTGATGGAGGATCCT+AGG | - | chr2_3:50616585-50616604 | None:intergenic | 45.0% | |
| !!! | TTTTTAATTTAGTAAATATT+TGG | + | chr2_3:50616764-50616783 | Msa0297010:intron | 5.0% |
| !!! | TTTTTAATTTAGTAAATATT+TGG | + | chr2_3:50616764-50616783 | Msa0297010:intron | 5.0% |
| GTGAGTGGGAGAGAAGGAAA+AGG | - | chr2_3:50615625-50615644 | None:intergenic | 50.0% | |
| ! | GGGAAAGAGAGAGTGTGAGT+GGG | - | chr2_3:50615639-50615658 | None:intergenic | 50.0% |
| ! | AGGGAAAGAGAGAGTGTGAG+TGG | - | chr2_3:50615640-50615659 | None:intergenic | 50.0% |
| GGCTTACTTCTGCCAAGGAA+AGG | + | chr2_3:50615753-50615772 | Msa0297010:CDS | 50.0% | |
| TGTCAGCGTCGTATCAGTGT+CGG | + | chr2_3:50615932-50615951 | Msa0297010:intron | 50.0% | |
| TTGCAGGCAGTGATGAAAGC+TGG | + | chr2_3:50616462-50616481 | Msa0297010:CDS | 50.0% | |
| TTGCAGGACCACTTCCTCAA+TGG | + | chr2_3:50616508-50616527 | Msa0297010:CDS | 50.0% | |
| GGGTGTTTCCATTGAGGAAG+TGG | - | chr2_3:50616519-50616538 | None:intergenic | 50.0% | |
| AAGACTCAAGAGGTGGAGGA+GGG | - | chr2_3:50616539-50616558 | None:intergenic | 50.0% | |
| AAAGACTCAAGAGGTGGAGG+AGG | - | chr2_3:50616540-50616559 | None:intergenic | 50.0% | |
| TCCCACCTGTCTCTATACCT+AGG | + | chr2_3:50616565-50616584 | Msa0297010:CDS | 50.0% | |
| !! | GAACTCGGTACTTTGGAGTC+CGG | + | chr2_3:50616990-50617009 | Msa0297010:intron | 50.0% |
| GTGAGTGGGAGAGAAGGAAA+AGG | - | chr2_3:50615625-50615644 | None:intergenic | 50.0% | |
| ! | GGGAAAGAGAGAGTGTGAGT+GGG | - | chr2_3:50615639-50615658 | None:intergenic | 50.0% |
| ! | AGGGAAAGAGAGAGTGTGAG+TGG | - | chr2_3:50615640-50615659 | None:intergenic | 50.0% |
| GGCTTACTTCTGCCAAGGAA+AGG | + | chr2_3:50615753-50615772 | Msa0297010:CDS | 50.0% | |
| TGTCAGCGTCGTATCAGTGT+CGG | + | chr2_3:50615932-50615951 | Msa0297010:intron | 50.0% | |
| TTGCAGGCAGTGATGAAAGC+TGG | + | chr2_3:50616462-50616481 | Msa0297010:CDS | 50.0% | |
| TTGCAGGACCACTTCCTCAA+TGG | + | chr2_3:50616508-50616527 | Msa0297010:CDS | 50.0% | |
| GGGTGTTTCCATTGAGGAAG+TGG | - | chr2_3:50616519-50616538 | None:intergenic | 50.0% | |
| AAGACTCAAGAGGTGGAGGA+GGG | - | chr2_3:50616539-50616558 | None:intergenic | 50.0% | |
| AAAGACTCAAGAGGTGGAGG+AGG | - | chr2_3:50616540-50616559 | None:intergenic | 50.0% | |
| TCCCACCTGTCTCTATACCT+AGG | + | chr2_3:50616565-50616584 | Msa0297010:CDS | 50.0% | |
| !! | GAACTCGGTACTTTGGAGTC+CGG | + | chr2_3:50616990-50617009 | Msa0297010:intron | 50.0% |
| ! | GAGAGTGTGAGTGGGAGAGA+AGG | - | chr2_3:50615631-50615650 | None:intergenic | 55.0% |
| !! | GGAGGAGGGTGTTTCCATTG+AGG | - | chr2_3:50616525-50616544 | None:intergenic | 55.0% |
| ! | GAGAGTGTGAGTGGGAGAGA+AGG | - | chr2_3:50615631-50615650 | None:intergenic | 55.0% |
| !! | GGAGGAGGGTGTTTCCATTG+AGG | - | chr2_3:50616525-50616544 | None:intergenic | 55.0% |
| CCAACCAGCTGCGCTAGACT+CGG | + | chr2_3:50617041-50617060 | Msa0297010:intron | 60.0% | |
| CAACCAGCTGCGCTAGACTC+GGG | + | chr2_3:50617042-50617061 | Msa0297010:intron | 60.0% | |
| CCAACCAGCTGCGCTAGACT+CGG | + | chr2_3:50617041-50617060 | Msa0297010:intron | 60.0% | |
| CAACCAGCTGCGCTAGACTC+GGG | + | chr2_3:50617042-50617061 | Msa0297010:intron | 60.0% | |
| CCGAGTCTAGCGCAGCTGGT+TGG | - | chr2_3:50617044-50617063 | None:intergenic | 65.0% | |
| GCGCTAGACTCGGGTGGTAG+TGG | + | chr2_3:50617051-50617070 | Msa0297010:intron | 65.0% | |
| CCGAGTCTAGCGCAGCTGGT+TGG | - | chr2_3:50617044-50617063 | None:intergenic | 65.0% | |
| GCGCTAGACTCGGGTGGTAG+TGG | + | chr2_3:50617051-50617070 | Msa0297010:intron | 65.0% | |
| CCACCCGAGTCTAGCGCAGC+TGG | - | chr2_3:50617048-50617067 | None:intergenic | 70.0% | |
| CCAGCTGCGCTAGACTCGGG+TGG | + | chr2_3:50617045-50617064 | Msa0297010:intron | 70.0% | |
| CCACCCGAGTCTAGCGCAGC+TGG | - | chr2_3:50617048-50617067 | None:intergenic | 70.0% | |
| CCAGCTGCGCTAGACTCGGG+TGG | + | chr2_3:50617045-50617064 | Msa0297010:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 50615563 | 50617258 | 50615563 | ID=Msa0297010;Name=Msa0297010 |
| chr2_3 | mRNA | 50615563 | 50617258 | 50615563 | ID=Msa0297010-mRNA-1;Parent=Msa0297010;Name=Msa0297010-mRNA-1;_AED=0.22;_eAED=0.22;_QI=158|0.5|0.33|1|1|1|3|0|293 |
| chr2_3 | exon | 50615563 | 50615774 | 50615563 | ID=Msa0297010-mRNA-1:exon:15924;Parent=Msa0297010-mRNA-1 |
| chr2_3 | exon | 50616066 | 50616722 | 50616066 | ID=Msa0297010-mRNA-1:exon:15925;Parent=Msa0297010-mRNA-1 |
| chr2_3 | exon | 50617088 | 50617258 | 50617088 | ID=Msa0297010-mRNA-1:exon:15926;Parent=Msa0297010-mRNA-1 |
| chr2_3 | five_prime_UTR | 50615563 | 50615720 | 50615563 | ID=Msa0297010-mRNA-1:five_prime_utr;Parent=Msa0297010-mRNA-1 |
| chr2_3 | CDS | 50615721 | 50615774 | 50615721 | ID=Msa0297010-mRNA-1:cds;Parent=Msa0297010-mRNA-1 |
| chr2_3 | CDS | 50616066 | 50616722 | 50616066 | ID=Msa0297010-mRNA-1:cds;Parent=Msa0297010-mRNA-1 |
| chr2_3 | CDS | 50617088 | 50617258 | 50617088 | ID=Msa0297010-mRNA-1:cds;Parent=Msa0297010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
