Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219370 | XP_013464838.1 | 96.203 | 237 | 9 | 0 | 1 | 237 | 1 | 237 | 4.28e-166 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219370 | A0A072VBV9 | 96.203 | 237 | 9 | 0 | 1 | 237 | 1 | 237 | 2.04e-166 | 470 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0218110 | Msa0219370 | 0.993641 | 3.668942e-201 | -8.615850e-47 |
| Msa0219370 | Msa0258190 | 0.885391 | 8.466591e-72 | -8.615850e-47 |
| Msa0219370 | Msa0297010 | 0.847517 | 1.100333e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219370 | MtrunA17_Chr2g0320271 | 96.203 | 237 | 9 | 0 | 1 | 237 | 1 | 237 | 3.93e-170 | 470 |
| Msa0219370 | MtrunA17_Chr4g0028161 | 63.889 | 252 | 74 | 8 | 1 | 237 | 1 | 250 | 7.34e-99 | 290 |
| Msa0219370 | MtrunA17_Chr1g0197151 | 49.724 | 181 | 72 | 5 | 7 | 185 | 6 | 169 | 1.06e-46 | 156 |
| Msa0219370 | MtrunA17_Chr2g0327801 | 32.243 | 214 | 90 | 10 | 14 | 190 | 9 | 204 | 2.61e-19 | 85.5 |
| Msa0219370 | MtrunA17_Chr4g0030841 | 31.667 | 240 | 105 | 8 | 14 | 207 | 8 | 234 | 4.21e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219370 | AT5G22930.1 | 54.118 | 255 | 79 | 6 | 1 | 237 | 1 | 235 | 1.33e-83 | 251 |
| Msa0219370 | AT3G44940.1 | 51.351 | 259 | 89 | 4 | 3 | 237 | 2 | 247 | 4.87e-73 | 225 |
| Msa0219370 | AT2G28140.1 | 52.479 | 242 | 70 | 11 | 4 | 237 | 5 | 209 | 1.92e-60 | 191 |
| Msa0219370 | AT2G28690.1 | 35.678 | 199 | 92 | 4 | 11 | 188 | 8 | 191 | 8.35e-27 | 105 |
| Msa0219370 | AT5G59760.1 | 32.420 | 219 | 120 | 7 | 10 | 217 | 8 | 209 | 2.78e-20 | 87.8 |
Find 54 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTAACTCTCTTCTTAAT+TGG | 0.059847 | 2_1:+66952246 | Msa0219370:CDS |
| GAAAATGAGTTAGGAGAATT+TGG | 0.137304 | 2_1:-66952115 | None:intergenic |
| CAACAAAATGCTCCACTTTC+TGG | 0.148671 | 2_1:+66952779 | Msa0219370:CDS |
| TGTTGTTGATTAGATCTTTA+AGG | 0.168436 | 2_1:-66952685 | None:intergenic |
| ACACAAACTTTGCTTGATTT+AGG | 0.216354 | 2_1:+66953654 | Msa0219370:CDS |
| CTTCAAACTCTTCTTCTTGC+AGG | 0.246829 | 2_1:+66953004 | Msa0219370:CDS |
| ATCATTGATTGATCAATAAC+TGG | 0.326107 | 2_1:-66952905 | None:intergenic |
| ATCTAACTCTCTTCTTAATT+GGG | 0.334531 | 2_1:+66952247 | Msa0219370:CDS |
| CTTTGGTACTTATTCTCATT+AGG | 0.335523 | 2_1:-66953208 | None:intergenic |
| AATAGACCACTACCTGAAAA+AGG | 0.345008 | 2_1:+66952944 | Msa0219370:CDS |
| CTCACTGTGGAAGAGTAAAT+AGG | 0.378934 | 2_1:+66953155 | Msa0219370:CDS |
| CATCTTCATAGTTGAAATCA+TGG | 0.391848 | 2_1:+66952217 | Msa0219370:exon |
| GAAATGTCAAAGACTTCTCT+TGG | 0.406188 | 2_1:+66952736 | Msa0219370:CDS |
| AAGGAAAAGGAAAATGAGTT+AGG | 0.406213 | 2_1:-66952124 | None:intergenic |
| GTGGAAGAGTAAATAGGAAA+AGG | 0.416196 | 2_1:+66953161 | Msa0219370:CDS |
| GATGAACAAATTACAAGAAA+AGG | 0.425567 | 2_1:+66952818 | Msa0219370:CDS |
| TTGCAGGACCACTTCCTCAA+TGG | 0.430493 | 2_1:+66953020 | Msa0219370:CDS |
| AAAATGAGTTAGGAGAATTT+GGG | 0.431400 | 2_1:-66952114 | None:intergenic |
| ATCACTTCTATACACAACTT+TGG | 0.432240 | 2_1:+66952598 | Msa0219370:CDS |
| GAGAGTGTGAGTGGGAGAGA+AGG | 0.436158 | 2_1:-66952143 | None:intergenic |
| GGGTGTTTCCATTGAGGAAG+TGG | 0.468433 | 2_1:-66953028 | None:intergenic |
| TGCAGTCAATGGAGGATTTG+AGG | 0.469227 | 2_1:+66952573 | Msa0219370:intron |
| TGGAAGAGTAAATAGGAAAA+GGG | 0.473459 | 2_1:+66953162 | Msa0219370:CDS |
| GTGAGTGGGAGAGAAGGAAA+AGG | 0.479057 | 2_1:-66952137 | None:intergenic |
| ATCAATGAAGTACAACCCTT+TGG | 0.485981 | 2_1:-66953225 | None:intergenic |
| GAATCTTGATGGAGGATCCT+AGG | 0.488623 | 2_1:-66953094 | None:intergenic |
| AGAAGAAGAGTTTGAAGAAG+AGG | 0.488907 | 2_1:-66952998 | None:intergenic |
| ATGCTTGAAACTCCAGAAAG+TGG | 0.498166 | 2_1:-66952791 | None:intergenic |
| AGGGAAAGAGAGAGTGTGAG+TGG | 0.499976 | 2_1:-66952152 | None:intergenic |
| AGATTATAAGTACCTTTCCT+TGG | 0.516487 | 2_1:-66952280 | None:intergenic |
| AGTTAGGAGAATTTGGGTGG+AGG | 0.521579 | 2_1:-66952108 | None:intergenic |
| AAAGGAATTGACTCAAACAA+TGG | 0.525642 | 2_1:+66952836 | Msa0219370:CDS |
| GGAGGAGGGTGTTTCCATTG+AGG | 0.528643 | 2_1:-66953034 | None:intergenic |
| TTGCAGGCAGTGATGAAAGC+TGG | 0.529664 | 2_1:+66952974 | Msa0219370:CDS |
| GGGAAAGAGAGAGTGTGAGT+GGG | 0.539104 | 2_1:-66952151 | None:intergenic |
| AAGGACTCAAGAGGTGGAGG+AGG | 0.539125 | 2_1:-66953049 | None:intergenic |
| GGATTTAACTCATTGAAAGA+AGG | 0.544860 | 2_1:+66953615 | Msa0219370:CDS |
| AGAATTTGGGTGGAGGTACA+AGG | 0.546342 | 2_1:-66952101 | None:intergenic |
| GGCTTACTTCTGCCAAGGAA+AGG | 0.551033 | 2_1:+66952268 | Msa0219370:CDS |
| AATTGGGCTTACTTCTGCCA+AGG | 0.555631 | 2_1:+66952263 | Msa0219370:CDS |
| TCAAAGGACTCAAGAGGTGG+AGG | 0.564067 | 2_1:-66953052 | None:intergenic |
| CTAATGAGAATAAGTACCAA+AGG | 0.565224 | 2_1:+66953209 | Msa0219370:CDS |
| TAATGAGAATAAGTACCAAA+GGG | 0.572125 | 2_1:+66953210 | Msa0219370:CDS |
| TTCCACCTGTCTTTATACCT+AGG | 0.584393 | 2_1:+66953077 | Msa0219370:CDS |
| ATGAGTTAGGAGAATTTGGG+TGG | 0.591697 | 2_1:-66952111 | None:intergenic |
| TATTGTTATGCAGTCAATGG+AGG | 0.594697 | 2_1:+66952565 | Msa0219370:intron |
| ATCTCAAAGGACTCAAGAGG+TGG | 0.602252 | 2_1:-66953055 | None:intergenic |
| AGCAAAAGTAGAATGTGAAG+AGG | 0.606333 | 2_1:-66953702 | None:intergenic |
| AAAGACAGGTGGAATCTCAA+AGG | 0.608828 | 2_1:-66953068 | None:intergenic |
| AGGATCCTAGGTATAAAGAC+AGG | 0.610448 | 2_1:-66953082 | None:intergenic |
| ATCCTAGGTATAAAGACAGG+TGG | 0.620187 | 2_1:-66953079 | None:intergenic |
| GGAATCTCAAAGGACTCAAG+AGG | 0.640526 | 2_1:-66953058 | None:intergenic |
| AGGACTCAAGAGGTGGAGGA+GGG | 0.640632 | 2_1:-66953048 | None:intergenic |
| ACTAATGCTAATTCTCACTG+TGG | 0.712843 | 2_1:+66953142 | Msa0219370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGCTTTTTTGAAAGAA+TGG | - | chr2_1:66952183-66952202 | None:intergenic | 20.0% |
| !! | TACTAAAAATTGAATCTTGA+TGG | - | chr2_1:66953108-66953127 | None:intergenic | 20.0% |
| !! | CCTATTATCTTGAAAATATT+TGG | - | chr2_1:66953417-66953436 | None:intergenic | 20.0% |
| !!! | CCAAATATTTTCAAGATAAT+AGG | + | chr2_1:66953414-66953433 | Msa0219370:intron | 20.0% |
| !!! | TCAAGATAATAGGATTTTTA+AGG | + | chr2_1:66953424-66953443 | Msa0219370:intron | 20.0% |
| !!! | TATTTGCTTTTTTGAAAGAA+TGG | - | chr2_1:66952183-66952202 | None:intergenic | 20.0% |
| !! | TACTAAAAATTGAATCTTGA+TGG | - | chr2_1:66953108-66953127 | None:intergenic | 20.0% |
| !! | CCTATTATCTTGAAAATATT+TGG | - | chr2_1:66953417-66953436 | None:intergenic | 20.0% |
| !!! | CCAAATATTTTCAAGATAAT+AGG | + | chr2_1:66953414-66953433 | Msa0219370:intron | 20.0% |
| !!! | TCAAGATAATAGGATTTTTA+AGG | + | chr2_1:66953424-66953443 | Msa0219370:intron | 20.0% |
| ! | AAAATGAGTTAGGAGAATTT+GGG | - | chr2_1:66952117-66952136 | None:intergenic | 25.0% |
| ! | AATCTAACTCTCTTCTTAAT+TGG | + | chr2_1:66952246-66952265 | Msa0219370:CDS | 25.0% |
| ! | ATCTAACTCTCTTCTTAATT+GGG | + | chr2_1:66952247-66952266 | Msa0219370:CDS | 25.0% |
| ! | TTATGAATGGAAATAGTTGA+AGG | - | chr2_1:66952310-66952329 | None:intergenic | 25.0% |
| ! | AGTAAAGTAAGCATTATGAA+TGG | - | chr2_1:66952323-66952342 | None:intergenic | 25.0% |
| !!! | TACTTTACTTTTATGAAGCA+CGG | + | chr2_1:66952334-66952353 | Msa0219370:intron | 25.0% |
| ! | ATCAGTGTAATTATATGTGT+CGG | + | chr2_1:66952435-66952454 | Msa0219370:intron | 25.0% |
| ! | TTCATAATCTATGCAATTTG+AGG | + | chr2_1:66952529-66952548 | Msa0219370:intron | 25.0% |
| !! | TGTTGTTGATTAGATCTTTA+AGG | - | chr2_1:66952688-66952707 | None:intergenic | 25.0% |
| ! | GATGAACAAATTACAAGAAA+AGG | + | chr2_1:66952818-66952837 | Msa0219370:CDS | 25.0% |
| !! | ATCATTGATTGATCAATAAC+TGG | - | chr2_1:66952908-66952927 | None:intergenic | 25.0% |
| ! | TAAAAATTGAATCTTGATGG+AGG | - | chr2_1:66953105-66953124 | None:intergenic | 25.0% |
| ! | TAATGAGAATAAGTACCAAA+GGG | + | chr2_1:66953210-66953229 | Msa0219370:CDS | 25.0% |
| !! | TTTGAAACTTAGCAAAATCA+CGG | + | chr2_1:66953358-66953377 | Msa0219370:intron | 25.0% |
| !!! | AATAGGATTTTTAAGGTTAG+TGG | + | chr2_1:66953431-66953450 | Msa0219370:intron | 25.0% |
| !!! | TATGTATAGCGTTTTTTGAT+CGG | + | chr2_1:66953471-66953490 | Msa0219370:intron | 25.0% |
| !! | TGCTTGATTTAGGAAATTTT+AGG | + | chr2_1:66953664-66953683 | Msa0219370:CDS | 25.0% |
| !! | GCTTGATTTAGGAAATTTTA+GGG | + | chr2_1:66953665-66953684 | Msa0219370:CDS | 25.0% |
| ! | AAAATGAGTTAGGAGAATTT+GGG | - | chr2_1:66952117-66952136 | None:intergenic | 25.0% |
| ! | AATCTAACTCTCTTCTTAAT+TGG | + | chr2_1:66952246-66952265 | Msa0219370:CDS | 25.0% |
| ! | ATCTAACTCTCTTCTTAATT+GGG | + | chr2_1:66952247-66952266 | Msa0219370:CDS | 25.0% |
| ! | TTATGAATGGAAATAGTTGA+AGG | - | chr2_1:66952310-66952329 | None:intergenic | 25.0% |
| ! | AGTAAAGTAAGCATTATGAA+TGG | - | chr2_1:66952323-66952342 | None:intergenic | 25.0% |
| !!! | TACTTTACTTTTATGAAGCA+CGG | + | chr2_1:66952334-66952353 | Msa0219370:intron | 25.0% |
| ! | ATCAGTGTAATTATATGTGT+CGG | + | chr2_1:66952435-66952454 | Msa0219370:intron | 25.0% |
| ! | TTCATAATCTATGCAATTTG+AGG | + | chr2_1:66952529-66952548 | Msa0219370:intron | 25.0% |
| !! | TGTTGTTGATTAGATCTTTA+AGG | - | chr2_1:66952688-66952707 | None:intergenic | 25.0% |
| ! | GATGAACAAATTACAAGAAA+AGG | + | chr2_1:66952818-66952837 | Msa0219370:CDS | 25.0% |
| !! | ATCATTGATTGATCAATAAC+TGG | - | chr2_1:66952908-66952927 | None:intergenic | 25.0% |
| ! | TAAAAATTGAATCTTGATGG+AGG | - | chr2_1:66953105-66953124 | None:intergenic | 25.0% |
| ! | TAATGAGAATAAGTACCAAA+GGG | + | chr2_1:66953210-66953229 | Msa0219370:CDS | 25.0% |
| !! | TTTGAAACTTAGCAAAATCA+CGG | + | chr2_1:66953358-66953377 | Msa0219370:intron | 25.0% |
| !!! | AATAGGATTTTTAAGGTTAG+TGG | + | chr2_1:66953431-66953450 | Msa0219370:intron | 25.0% |
| !!! | TATGTATAGCGTTTTTTGAT+CGG | + | chr2_1:66953471-66953490 | Msa0219370:intron | 25.0% |
| !! | TGCTTGATTTAGGAAATTTT+AGG | + | chr2_1:66953664-66953683 | Msa0219370:CDS | 25.0% |
| !! | GCTTGATTTAGGAAATTTTA+GGG | + | chr2_1:66953665-66953684 | Msa0219370:CDS | 25.0% |
| GAAAATGAGTTAGGAGAATT+TGG | - | chr2_1:66952118-66952137 | None:intergenic | 30.0% | |
| AAGGAAAAGGAAAATGAGTT+AGG | - | chr2_1:66952127-66952146 | None:intergenic | 30.0% | |
| !!! | TGCTTTTTTGAAAGAATGGA+GGG | - | chr2_1:66952179-66952198 | None:intergenic | 30.0% |
| !!! | TTGCTTTTTTGAAAGAATGG+AGG | - | chr2_1:66952180-66952199 | None:intergenic | 30.0% |
| CATCTTCATAGTTGAAATCA+TGG | + | chr2_1:66952217-66952236 | Msa0219370:exon | 30.0% | |
| AGATTATAAGTACCTTTCCT+TGG | - | chr2_1:66952283-66952302 | None:intergenic | 30.0% | |
| ATTGCATAGATTATGAACCA+CGG | - | chr2_1:66952526-66952545 | None:intergenic | 30.0% | |
| CTTTATTGTTATGCAGTCAA+TGG | + | chr2_1:66952562-66952581 | Msa0219370:intron | 30.0% | |
| ATCACTTCTATACACAACTT+TGG | + | chr2_1:66952598-66952617 | Msa0219370:CDS | 30.0% | |
| ! | AAAGGAATTGACTCAAACAA+TGG | + | chr2_1:66952836-66952855 | Msa0219370:CDS | 30.0% |
| ! | TGCAAAAGTTTACCTTTTTC+AGG | - | chr2_1:66952959-66952978 | None:intergenic | 30.0% |
| ! | TGAAAAAGGTAAACTTTTGC+AGG | + | chr2_1:66952958-66952977 | Msa0219370:CDS | 30.0% |
| TGGAAGAGTAAATAGGAAAA+GGG | + | chr2_1:66953162-66953181 | Msa0219370:CDS | 30.0% | |
| CTTTGGTACTTATTCTCATT+AGG | - | chr2_1:66953211-66953230 | None:intergenic | 30.0% | |
| CTAATGAGAATAAGTACCAA+AGG | + | chr2_1:66953209-66953228 | Msa0219370:CDS | 30.0% | |
| CAACGAGTTTGAGAAAATTA+CGG | + | chr2_1:66953304-66953323 | Msa0219370:intron | 30.0% | |
| !! | TTTTAGGAGACAAAGTTATG+TGG | + | chr2_1:66953594-66953613 | Msa0219370:intron | 30.0% |
| GGATTTAACTCATTGAAAGA+AGG | + | chr2_1:66953615-66953634 | Msa0219370:CDS | 30.0% | |
| ACACAAACTTTGCTTGATTT+AGG | + | chr2_1:66953654-66953673 | Msa0219370:CDS | 30.0% | |
| GAAAATGAGTTAGGAGAATT+TGG | - | chr2_1:66952118-66952137 | None:intergenic | 30.0% | |
| AAGGAAAAGGAAAATGAGTT+AGG | - | chr2_1:66952127-66952146 | None:intergenic | 30.0% | |
| !!! | TGCTTTTTTGAAAGAATGGA+GGG | - | chr2_1:66952179-66952198 | None:intergenic | 30.0% |
| !!! | TTGCTTTTTTGAAAGAATGG+AGG | - | chr2_1:66952180-66952199 | None:intergenic | 30.0% |
| CATCTTCATAGTTGAAATCA+TGG | + | chr2_1:66952217-66952236 | Msa0219370:exon | 30.0% | |
| AGATTATAAGTACCTTTCCT+TGG | - | chr2_1:66952283-66952302 | None:intergenic | 30.0% | |
| ATTGCATAGATTATGAACCA+CGG | - | chr2_1:66952526-66952545 | None:intergenic | 30.0% | |
| CTTTATTGTTATGCAGTCAA+TGG | + | chr2_1:66952562-66952581 | Msa0219370:intron | 30.0% | |
| ATCACTTCTATACACAACTT+TGG | + | chr2_1:66952598-66952617 | Msa0219370:CDS | 30.0% | |
| ! | AAAGGAATTGACTCAAACAA+TGG | + | chr2_1:66952836-66952855 | Msa0219370:CDS | 30.0% |
| ! | TGCAAAAGTTTACCTTTTTC+AGG | - | chr2_1:66952959-66952978 | None:intergenic | 30.0% |
| ! | TGAAAAAGGTAAACTTTTGC+AGG | + | chr2_1:66952958-66952977 | Msa0219370:CDS | 30.0% |
| TGGAAGAGTAAATAGGAAAA+GGG | + | chr2_1:66953162-66953181 | Msa0219370:CDS | 30.0% | |
| CTTTGGTACTTATTCTCATT+AGG | - | chr2_1:66953211-66953230 | None:intergenic | 30.0% | |
| CTAATGAGAATAAGTACCAA+AGG | + | chr2_1:66953209-66953228 | Msa0219370:CDS | 30.0% | |
| CAACGAGTTTGAGAAAATTA+CGG | + | chr2_1:66953304-66953323 | Msa0219370:intron | 30.0% | |
| !! | TTTTAGGAGACAAAGTTATG+TGG | + | chr2_1:66953594-66953613 | Msa0219370:intron | 30.0% |
| GGATTTAACTCATTGAAAGA+AGG | + | chr2_1:66953615-66953634 | Msa0219370:CDS | 30.0% | |
| ACACAAACTTTGCTTGATTT+AGG | + | chr2_1:66953654-66953673 | Msa0219370:CDS | 30.0% | |
| !! | TTTTGAAAGAATGGAGGGAA+GGG | - | chr2_1:66952174-66952193 | None:intergenic | 35.0% |
| !! | TTTTTGAAAGAATGGAGGGA+AGG | - | chr2_1:66952175-66952194 | None:intergenic | 35.0% |
| TATTGTTATGCAGTCAATGG+AGG | + | chr2_1:66952565-66952584 | Msa0219370:intron | 35.0% | |
| GAAATGTCAAAGACTTCTCT+TGG | + | chr2_1:66952736-66952755 | Msa0219370:CDS | 35.0% | |
| !!! | TTTTCAGGTAGTGGTCTATT+TGG | - | chr2_1:66952944-66952963 | None:intergenic | 35.0% |
| AATAGACCACTACCTGAAAA+AGG | + | chr2_1:66952944-66952963 | Msa0219370:CDS | 35.0% | |
| !!! | AGTTTACCTTTTTCAGGTAG+TGG | - | chr2_1:66952953-66952972 | None:intergenic | 35.0% |
| AGAAGAAGAGTTTGAAGAAG+AGG | - | chr2_1:66953001-66953020 | None:intergenic | 35.0% | |
| ACTAATGCTAATTCTCACTG+TGG | + | chr2_1:66953142-66953161 | Msa0219370:CDS | 35.0% | |
| GTGGAAGAGTAAATAGGAAA+AGG | + | chr2_1:66953161-66953180 | Msa0219370:CDS | 35.0% | |
| ATCAATGAAGTACAACCCTT+TGG | - | chr2_1:66953228-66953247 | None:intergenic | 35.0% | |
| !!! | TATAGCGTTTTTTGATCGGT+AGG | + | chr2_1:66953475-66953494 | Msa0219370:intron | 35.0% |
| !! | GGTAGTGGTATGTTTGTTTT+AGG | + | chr2_1:66953578-66953597 | Msa0219370:intron | 35.0% |
| AGCAAAAGTAGAATGTGAAG+AGG | - | chr2_1:66953705-66953724 | None:intergenic | 35.0% | |
| !! | TTTTGAAAGAATGGAGGGAA+GGG | - | chr2_1:66952174-66952193 | None:intergenic | 35.0% |
| !! | TTTTTGAAAGAATGGAGGGA+AGG | - | chr2_1:66952175-66952194 | None:intergenic | 35.0% |
| TATTGTTATGCAGTCAATGG+AGG | + | chr2_1:66952565-66952584 | Msa0219370:intron | 35.0% | |
| GAAATGTCAAAGACTTCTCT+TGG | + | chr2_1:66952736-66952755 | Msa0219370:CDS | 35.0% | |
| !!! | TTTTCAGGTAGTGGTCTATT+TGG | - | chr2_1:66952944-66952963 | None:intergenic | 35.0% |
| AATAGACCACTACCTGAAAA+AGG | + | chr2_1:66952944-66952963 | Msa0219370:CDS | 35.0% | |
| !!! | AGTTTACCTTTTTCAGGTAG+TGG | - | chr2_1:66952953-66952972 | None:intergenic | 35.0% |
| AGAAGAAGAGTTTGAAGAAG+AGG | - | chr2_1:66953001-66953020 | None:intergenic | 35.0% | |
| ACTAATGCTAATTCTCACTG+TGG | + | chr2_1:66953142-66953161 | Msa0219370:CDS | 35.0% | |
| GTGGAAGAGTAAATAGGAAA+AGG | + | chr2_1:66953161-66953180 | Msa0219370:CDS | 35.0% | |
| ATCAATGAAGTACAACCCTT+TGG | - | chr2_1:66953228-66953247 | None:intergenic | 35.0% | |
| !!! | TATAGCGTTTTTTGATCGGT+AGG | + | chr2_1:66953475-66953494 | Msa0219370:intron | 35.0% |
| !! | GGTAGTGGTATGTTTGTTTT+AGG | + | chr2_1:66953578-66953597 | Msa0219370:intron | 35.0% |
| AGCAAAAGTAGAATGTGAAG+AGG | - | chr2_1:66953705-66953724 | None:intergenic | 35.0% | |
| ATGAGTTAGGAGAATTTGGG+TGG | - | chr2_1:66952114-66952133 | None:intergenic | 40.0% | |
| !!! | GTGGAGCATTTTGTTGTTGA+TGG | - | chr2_1:66952775-66952794 | None:intergenic | 40.0% |
| CAACAAAATGCTCCACTTTC+TGG | + | chr2_1:66952779-66952798 | Msa0219370:CDS | 40.0% | |
| ATGCTTGAAACTCCAGAAAG+TGG | - | chr2_1:66952794-66952813 | None:intergenic | 40.0% | |
| CTTCAAACTCTTCTTCTTGC+AGG | + | chr2_1:66953004-66953023 | Msa0219370:CDS | 40.0% | |
| AAAGACAGGTGGAATCTCAA+AGG | - | chr2_1:66953071-66953090 | None:intergenic | 40.0% | |
| TTCCACCTGTCTTTATACCT+AGG | + | chr2_1:66953077-66953096 | Msa0219370:CDS | 40.0% | |
| ATCCTAGGTATAAAGACAGG+TGG | - | chr2_1:66953082-66953101 | None:intergenic | 40.0% | |
| AGGATCCTAGGTATAAAGAC+AGG | - | chr2_1:66953085-66953104 | None:intergenic | 40.0% | |
| CTCACTGTGGAAGAGTAAAT+AGG | + | chr2_1:66953155-66953174 | Msa0219370:CDS | 40.0% | |
| TGATCGGTAGGAATTGAACT+CGG | + | chr2_1:66953487-66953506 | Msa0219370:intron | 40.0% | |
| AGGAATTGAACTCGGTACTT+TGG | + | chr2_1:66953495-66953514 | Msa0219370:intron | 40.0% | |
| TATCTGACTGTCGTAAACTC+CGG | - | chr2_1:66953524-66953543 | None:intergenic | 40.0% | |
| ATGAGTTAGGAGAATTTGGG+TGG | - | chr2_1:66952114-66952133 | None:intergenic | 40.0% | |
| !!! | GTGGAGCATTTTGTTGTTGA+TGG | - | chr2_1:66952775-66952794 | None:intergenic | 40.0% |
| CAACAAAATGCTCCACTTTC+TGG | + | chr2_1:66952779-66952798 | Msa0219370:CDS | 40.0% | |
| ATGCTTGAAACTCCAGAAAG+TGG | - | chr2_1:66952794-66952813 | None:intergenic | 40.0% | |
| CTTCAAACTCTTCTTCTTGC+AGG | + | chr2_1:66953004-66953023 | Msa0219370:CDS | 40.0% | |
| AAAGACAGGTGGAATCTCAA+AGG | - | chr2_1:66953071-66953090 | None:intergenic | 40.0% | |
| TTCCACCTGTCTTTATACCT+AGG | + | chr2_1:66953077-66953096 | Msa0219370:CDS | 40.0% | |
| ATCCTAGGTATAAAGACAGG+TGG | - | chr2_1:66953082-66953101 | None:intergenic | 40.0% | |
| AGGATCCTAGGTATAAAGAC+AGG | - | chr2_1:66953085-66953104 | None:intergenic | 40.0% | |
| CTCACTGTGGAAGAGTAAAT+AGG | + | chr2_1:66953155-66953174 | Msa0219370:CDS | 40.0% | |
| TGATCGGTAGGAATTGAACT+CGG | + | chr2_1:66953487-66953506 | Msa0219370:intron | 40.0% | |
| AGGAATTGAACTCGGTACTT+TGG | + | chr2_1:66953495-66953514 | Msa0219370:intron | 40.0% | |
| TATCTGACTGTCGTAAACTC+CGG | - | chr2_1:66953524-66953543 | None:intergenic | 40.0% | |
| ! | AGAATTTGGGTGGAGGTACA+AGG | - | chr2_1:66952104-66952123 | None:intergenic | 45.0% |
| AGTTAGGAGAATTTGGGTGG+AGG | - | chr2_1:66952111-66952130 | None:intergenic | 45.0% | |
| AATTGGGCTTACTTCTGCCA+AGG | + | chr2_1:66952263-66952282 | Msa0219370:CDS | 45.0% | |
| ATGAAGCACGGATACGAACA+CGG | + | chr2_1:66952346-66952365 | Msa0219370:intron | 45.0% | |
| ! | TATATGTGTCGGCATCGTGT+CGG | + | chr2_1:66952446-66952465 | Msa0219370:intron | 45.0% |
| TATGAACCACGGACACTCTT+CGG | - | chr2_1:66952515-66952534 | None:intergenic | 45.0% | |
| TGCAGTCAATGGAGGATTTG+AGG | + | chr2_1:66952573-66952592 | Msa0219370:intron | 45.0% | |
| ATCTCAAAGGACTCAAGAGG+TGG | - | chr2_1:66953058-66953077 | None:intergenic | 45.0% | |
| GGAATCTCAAAGGACTCAAG+AGG | - | chr2_1:66953061-66953080 | None:intergenic | 45.0% | |
| GAATCTTGATGGAGGATCCT+AGG | - | chr2_1:66953097-66953116 | None:intergenic | 45.0% | |
| ! | AGAATTTGGGTGGAGGTACA+AGG | - | chr2_1:66952104-66952123 | None:intergenic | 45.0% |
| AGTTAGGAGAATTTGGGTGG+AGG | - | chr2_1:66952111-66952130 | None:intergenic | 45.0% | |
| AATTGGGCTTACTTCTGCCA+AGG | + | chr2_1:66952263-66952282 | Msa0219370:CDS | 45.0% | |
| ATGAAGCACGGATACGAACA+CGG | + | chr2_1:66952346-66952365 | Msa0219370:intron | 45.0% | |
| ! | TATATGTGTCGGCATCGTGT+CGG | + | chr2_1:66952446-66952465 | Msa0219370:intron | 45.0% |
| TATGAACCACGGACACTCTT+CGG | - | chr2_1:66952515-66952534 | None:intergenic | 45.0% | |
| TGCAGTCAATGGAGGATTTG+AGG | + | chr2_1:66952573-66952592 | Msa0219370:intron | 45.0% | |
| ATCTCAAAGGACTCAAGAGG+TGG | - | chr2_1:66953058-66953077 | None:intergenic | 45.0% | |
| GGAATCTCAAAGGACTCAAG+AGG | - | chr2_1:66953061-66953080 | None:intergenic | 45.0% | |
| GAATCTTGATGGAGGATCCT+AGG | - | chr2_1:66953097-66953116 | None:intergenic | 45.0% | |
| !!! | TTTTTAATTTAGTAAATATT+TGG | + | chr2_1:66953276-66953295 | Msa0219370:intron | 5.0% |
| !!! | TTTTTAATTTAGTAAATATT+TGG | + | chr2_1:66953276-66953295 | Msa0219370:intron | 5.0% |
| GTGAGTGGGAGAGAAGGAAA+AGG | - | chr2_1:66952140-66952159 | None:intergenic | 50.0% | |
| ! | GGGAAAGAGAGAGTGTGAGT+GGG | - | chr2_1:66952154-66952173 | None:intergenic | 50.0% |
| ! | AGGGAAAGAGAGAGTGTGAG+TGG | - | chr2_1:66952155-66952174 | None:intergenic | 50.0% |
| GGCTTACTTCTGCCAAGGAA+AGG | + | chr2_1:66952268-66952287 | Msa0219370:CDS | 50.0% | |
| CATGACACATATCCGACACC+AGG | + | chr2_1:66952476-66952495 | Msa0219370:intron | 50.0% | |
| TTAGACGTGTGTCCTGGTGT+CGG | - | chr2_1:66952491-66952510 | None:intergenic | 50.0% | |
| ! | TTCGGATTAGACGTGTGTCC+TGG | - | chr2_1:66952497-66952516 | None:intergenic | 50.0% |
| !! | TCTAATCCGAAGAGTGTCCG+TGG | + | chr2_1:66952506-66952525 | Msa0219370:intron | 50.0% |
| TTGCAGGCAGTGATGAAAGC+TGG | + | chr2_1:66952974-66952993 | Msa0219370:CDS | 50.0% | |
| TTGCAGGACCACTTCCTCAA+TGG | + | chr2_1:66953020-66953039 | Msa0219370:CDS | 50.0% | |
| GGGTGTTTCCATTGAGGAAG+TGG | - | chr2_1:66953031-66953050 | None:intergenic | 50.0% | |
| TCAAAGGACTCAAGAGGTGG+AGG | - | chr2_1:66953055-66953074 | None:intergenic | 50.0% | |
| !! | GAACTCGGTACTTTGGAGTC+CGG | + | chr2_1:66953502-66953521 | Msa0219370:intron | 50.0% |
| GTGAGTGGGAGAGAAGGAAA+AGG | - | chr2_1:66952140-66952159 | None:intergenic | 50.0% | |
| ! | GGGAAAGAGAGAGTGTGAGT+GGG | - | chr2_1:66952154-66952173 | None:intergenic | 50.0% |
| ! | AGGGAAAGAGAGAGTGTGAG+TGG | - | chr2_1:66952155-66952174 | None:intergenic | 50.0% |
| GGCTTACTTCTGCCAAGGAA+AGG | + | chr2_1:66952268-66952287 | Msa0219370:CDS | 50.0% | |
| CATGACACATATCCGACACC+AGG | + | chr2_1:66952476-66952495 | Msa0219370:intron | 50.0% | |
| TTAGACGTGTGTCCTGGTGT+CGG | - | chr2_1:66952491-66952510 | None:intergenic | 50.0% | |
| ! | TTCGGATTAGACGTGTGTCC+TGG | - | chr2_1:66952497-66952516 | None:intergenic | 50.0% |
| !! | TCTAATCCGAAGAGTGTCCG+TGG | + | chr2_1:66952506-66952525 | Msa0219370:intron | 50.0% |
| TTGCAGGCAGTGATGAAAGC+TGG | + | chr2_1:66952974-66952993 | Msa0219370:CDS | 50.0% | |
| TTGCAGGACCACTTCCTCAA+TGG | + | chr2_1:66953020-66953039 | Msa0219370:CDS | 50.0% | |
| GGGTGTTTCCATTGAGGAAG+TGG | - | chr2_1:66953031-66953050 | None:intergenic | 50.0% | |
| TCAAAGGACTCAAGAGGTGG+AGG | - | chr2_1:66953055-66953074 | None:intergenic | 50.0% | |
| !! | GAACTCGGTACTTTGGAGTC+CGG | + | chr2_1:66953502-66953521 | Msa0219370:intron | 50.0% |
| ! | GAGAGTGTGAGTGGGAGAGA+AGG | - | chr2_1:66952146-66952165 | None:intergenic | 55.0% |
| ACGGATACGAACACGGACAC+CGG | + | chr2_1:66952353-66952372 | Msa0219370:intron | 55.0% | |
| GTCAGTGTCTGTGTCGTGTC+CGG | - | chr2_1:66952375-66952394 | None:intergenic | 55.0% | |
| !! | GGAGGAGGGTGTTTCCATTG+AGG | - | chr2_1:66953037-66953056 | None:intergenic | 55.0% |
| AGGACTCAAGAGGTGGAGGA+GGG | - | chr2_1:66953051-66953070 | None:intergenic | 55.0% | |
| AAGGACTCAAGAGGTGGAGG+AGG | - | chr2_1:66953052-66953071 | None:intergenic | 55.0% | |
| ! | GAGAGTGTGAGTGGGAGAGA+AGG | - | chr2_1:66952146-66952165 | None:intergenic | 55.0% |
| ACGGATACGAACACGGACAC+CGG | + | chr2_1:66952353-66952372 | Msa0219370:intron | 55.0% | |
| GTCAGTGTCTGTGTCGTGTC+CGG | - | chr2_1:66952375-66952394 | None:intergenic | 55.0% | |
| !! | GGAGGAGGGTGTTTCCATTG+AGG | - | chr2_1:66953037-66953056 | None:intergenic | 55.0% |
| AGGACTCAAGAGGTGGAGGA+GGG | - | chr2_1:66953051-66953070 | None:intergenic | 55.0% | |
| AAGGACTCAAGAGGTGGAGG+AGG | - | chr2_1:66953052-66953071 | None:intergenic | 55.0% | |
| ! | TGTCGGCATCGTGTCGGTGT+CGG | + | chr2_1:66952452-66952471 | Msa0219370:intron | 60.0% |
| CCAACCAGCTGCGCTAGACT+CGG | + | chr2_1:66953553-66953572 | Msa0219370:intron | 60.0% | |
| CAACCAGCTGCGCTAGACTC+GGG | + | chr2_1:66953554-66953573 | Msa0219370:intron | 60.0% | |
| ! | TGTCGGCATCGTGTCGGTGT+CGG | + | chr2_1:66952452-66952471 | Msa0219370:intron | 60.0% |
| CCAACCAGCTGCGCTAGACT+CGG | + | chr2_1:66953553-66953572 | Msa0219370:intron | 60.0% | |
| CAACCAGCTGCGCTAGACTC+GGG | + | chr2_1:66953554-66953573 | Msa0219370:intron | 60.0% | |
| CCGAGTCTAGCGCAGCTGGT+TGG | - | chr2_1:66953556-66953575 | None:intergenic | 65.0% | |
| GCGCTAGACTCGGGTGGTAG+TGG | + | chr2_1:66953563-66953582 | Msa0219370:intron | 65.0% | |
| CCGAGTCTAGCGCAGCTGGT+TGG | - | chr2_1:66953556-66953575 | None:intergenic | 65.0% | |
| GCGCTAGACTCGGGTGGTAG+TGG | + | chr2_1:66953563-66953582 | Msa0219370:intron | 65.0% | |
| CCACCCGAGTCTAGCGCAGC+TGG | - | chr2_1:66953560-66953579 | None:intergenic | 70.0% | |
| CCAGCTGCGCTAGACTCGGG+TGG | + | chr2_1:66953557-66953576 | Msa0219370:intron | 70.0% | |
| CCACCCGAGTCTAGCGCAGC+TGG | - | chr2_1:66953560-66953579 | None:intergenic | 70.0% | |
| CCAGCTGCGCTAGACTCGGG+TGG | + | chr2_1:66953557-66953576 | Msa0219370:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 66952078 | 66953770 | 66952078 | ID=Msa0219370;Name=Msa0219370 |
| chr2_1 | mRNA | 66952078 | 66953770 | 66952078 | ID=Msa0219370-mRNA-1;Parent=Msa0219370;Name=Msa0219370-mRNA-1;_AED=0.22;_eAED=0.22;_QI=158|0.5|0.33|1|1|1|3|0|293 |
| chr2_1 | exon | 66952078 | 66952289 | 66952078 | ID=Msa0219370-mRNA-1:exon:18885;Parent=Msa0219370-mRNA-1 |
| chr2_1 | exon | 66952578 | 66953234 | 66952578 | ID=Msa0219370-mRNA-1:exon:18886;Parent=Msa0219370-mRNA-1 |
| chr2_1 | exon | 66953600 | 66953770 | 66953600 | ID=Msa0219370-mRNA-1:exon:18887;Parent=Msa0219370-mRNA-1 |
| chr2_1 | five_prime_UTR | 66952078 | 66952235 | 66952078 | ID=Msa0219370-mRNA-1:five_prime_utr;Parent=Msa0219370-mRNA-1 |
| chr2_1 | CDS | 66952236 | 66952289 | 66952236 | ID=Msa0219370-mRNA-1:cds;Parent=Msa0219370-mRNA-1 |
| chr2_1 | CDS | 66952578 | 66953234 | 66952578 | ID=Msa0219370-mRNA-1:cds;Parent=Msa0219370-mRNA-1 |
| chr2_1 | CDS | 66953600 | 66953770 | 66953600 | ID=Msa0219370-mRNA-1:cds;Parent=Msa0219370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
