Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219040 | XP_003596807.1 | 93.846 | 325 | 19 | 1 | 1 | 325 | 1 | 324 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219040 | sp|Q8RYD6|AI5L1_ARATH | 44.144 | 333 | 155 | 9 | 7 | 325 | 16 | 331 | 3.48e-67 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219040 | G7ITR9 | 93.846 | 325 | 19 | 1 | 1 | 325 | 1 | 324 | 0.0 | 607 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0219040 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0219040 | Msa0258580 | 0.928624 | 2.217492e-92 | -8.615850e-47 |
| Msa0219040 | Msa0298030 | 0.891419 | 4.040177e-74 | -8.615850e-47 |
| Msa0219040 | Msa0323110 | 0.868211 | 7.725871e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219040 | MtrunA17_Chr2g0321381 | 93.403 | 288 | 18 | 1 | 1 | 288 | 1 | 287 | 0.0 | 533 |
| Msa0219040 | MtrunA17_Chr2g0321411 | 67.178 | 326 | 68 | 5 | 1 | 325 | 1 | 288 | 2.45e-148 | 419 |
| Msa0219040 | MtrunA17_Chr8g0355121 | 37.324 | 284 | 131 | 11 | 25 | 285 | 26 | 285 | 7.28e-36 | 131 |
| Msa0219040 | MtrunA17_Chr3g0080341 | 35.714 | 294 | 145 | 14 | 20 | 285 | 17 | 294 | 2.12e-34 | 128 |
| Msa0219040 | MtrunA17_Chr7g0254991 | 35.855 | 304 | 148 | 12 | 12 | 286 | 8 | 293 | 2.33e-34 | 127 |
| Msa0219040 | MtrunA17_Chr7g0266211 | 47.761 | 134 | 57 | 4 | 29 | 149 | 45 | 178 | 1.91e-29 | 116 |
| Msa0219040 | MtrunA17_Chr7g0266211 | 47.337 | 169 | 57 | 5 | 168 | 319 | 272 | 425 | 9.41e-26 | 106 |
| Msa0219040 | MtrunA17_Chr6g0460301 | 36.455 | 299 | 131 | 11 | 24 | 285 | 17 | 293 | 5.47e-27 | 108 |
| Msa0219040 | MtrunA17_Chr3g0133971 | 42.748 | 131 | 60 | 6 | 24 | 151 | 28 | 146 | 7.45e-20 | 89.7 |
| Msa0219040 | MtrunA17_Chr3g0133971 | 48.515 | 101 | 40 | 3 | 229 | 325 | 339 | 431 | 9.28e-17 | 80.5 |
| Msa0219040 | MtrunA17_Chr4g0044771 | 50.549 | 91 | 35 | 2 | 236 | 325 | 295 | 376 | 7.33e-16 | 77.4 |
| Msa0219040 | MtrunA17_Chr4g0044771 | 34.559 | 136 | 69 | 4 | 24 | 151 | 19 | 142 | 6.78e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219040 | AT3G44460.1 | 44.144 | 333 | 155 | 9 | 7 | 325 | 16 | 331 | 3.54e-68 | 216 |
| Msa0219040 | AT2G36270.1 | 35.252 | 417 | 139 | 12 | 20 | 319 | 34 | 436 | 7.18e-56 | 187 |
| Msa0219040 | AT2G36270.2 | 35.252 | 417 | 139 | 12 | 20 | 319 | 34 | 436 | 7.18e-56 | 187 |
| Msa0219040 | AT2G36270.3 | 35.623 | 393 | 125 | 11 | 20 | 298 | 34 | 412 | 7.69e-55 | 185 |
| Msa0219040 | AT3G56850.1 | 39.785 | 279 | 123 | 12 | 25 | 285 | 18 | 269 | 6.74e-41 | 145 |
| Msa0219040 | AT2G41070.5 | 35.338 | 266 | 122 | 8 | 24 | 286 | 17 | 235 | 2.60e-36 | 131 |
| Msa0219040 | AT2G41070.4 | 35.338 | 266 | 122 | 8 | 24 | 286 | 26 | 244 | 4.35e-36 | 131 |
| Msa0219040 | AT2G41070.3 | 35.793 | 271 | 123 | 9 | 24 | 291 | 17 | 239 | 5.00e-36 | 131 |
| Msa0219040 | AT2G41070.1 | 35.793 | 271 | 123 | 9 | 24 | 291 | 17 | 239 | 5.00e-36 | 131 |
| Msa0219040 | AT2G41070.2 | 35.793 | 271 | 123 | 9 | 24 | 291 | 17 | 239 | 5.00e-36 | 131 |
| Msa0219040 | AT1G49720.2 | 31.638 | 354 | 163 | 12 | 21 | 299 | 20 | 369 | 2.71e-25 | 105 |
| Msa0219040 | AT1G49720.1 | 28.756 | 386 | 181 | 13 | 21 | 325 | 20 | 392 | 7.56e-22 | 95.5 |
| Msa0219040 | AT1G49720.3 | 28.756 | 386 | 181 | 13 | 21 | 325 | 20 | 392 | 7.56e-22 | 95.5 |
| Msa0219040 | AT1G45249.7 | 35.294 | 153 | 88 | 2 | 24 | 165 | 37 | 189 | 1.03e-19 | 89.7 |
| Msa0219040 | AT1G45249.7 | 51.456 | 103 | 41 | 4 | 224 | 325 | 337 | 431 | 7.20e-16 | 78.2 |
| Msa0219040 | AT1G45249.6 | 35.294 | 153 | 88 | 2 | 24 | 165 | 37 | 189 | 1.03e-19 | 89.7 |
| Msa0219040 | AT1G45249.6 | 51.456 | 103 | 41 | 4 | 224 | 325 | 337 | 431 | 7.20e-16 | 78.2 |
| Msa0219040 | AT1G45249.1 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 1.21e-19 | 89.4 |
| Msa0219040 | AT1G45249.1 | 51.456 | 103 | 41 | 4 | 224 | 325 | 322 | 416 | 6.26e-16 | 78.6 |
| Msa0219040 | AT1G45249.3 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 1.81e-19 | 89.0 |
| Msa0219040 | AT1G45249.3 | 46.491 | 114 | 41 | 5 | 224 | 325 | 322 | 427 | 4.27e-13 | 70.1 |
| Msa0219040 | AT1G45249.10 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 2.49e-19 | 88.2 |
| Msa0219040 | AT1G45249.5 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 2.49e-19 | 88.2 |
| Msa0219040 | AT1G45249.4 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 3.38e-19 | 87.8 |
| Msa0219040 | AT1G45249.8 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 3.38e-19 | 87.8 |
| Msa0219040 | AT1G45249.2 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 3.38e-19 | 87.8 |
| Msa0219040 | AT1G45249.9 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 3.38e-19 | 87.8 |
| Msa0219040 | AT4G34000.3 | 31.532 | 222 | 96 | 6 | 24 | 201 | 28 | 237 | 8.98e-18 | 84.0 |
| Msa0219040 | AT4G34000.3 | 72.917 | 48 | 13 | 0 | 238 | 285 | 369 | 416 | 2.83e-14 | 73.6 |
| Msa0219040 | AT4G34000.1 | 31.532 | 222 | 96 | 6 | 24 | 201 | 28 | 237 | 9.05e-18 | 84.0 |
| Msa0219040 | AT4G34000.1 | 50.000 | 88 | 42 | 1 | 238 | 325 | 369 | 454 | 4.15e-16 | 79.3 |
| Msa0219040 | AT4G34000.4 | 31.532 | 222 | 96 | 6 | 24 | 201 | 28 | 237 | 9.05e-18 | 84.0 |
| Msa0219040 | AT4G34000.4 | 50.000 | 88 | 42 | 1 | 238 | 325 | 369 | 454 | 4.15e-16 | 79.3 |
| Msa0219040 | AT4G34000.2 | 31.532 | 222 | 96 | 6 | 24 | 201 | 28 | 237 | 9.05e-18 | 84.0 |
| Msa0219040 | AT4G34000.2 | 50.000 | 88 | 42 | 1 | 238 | 325 | 369 | 454 | 4.15e-16 | 79.3 |
| Msa0219040 | AT5G44080.1 | 30.435 | 230 | 124 | 6 | 98 | 325 | 120 | 315 | 4.25e-17 | 80.9 |
| Msa0219040 | AT3G19290.1 | 47.664 | 107 | 52 | 2 | 219 | 325 | 329 | 431 | 4.97e-17 | 81.6 |
| Msa0219040 | AT3G19290.1 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.47e-16 | 80.5 |
| Msa0219040 | AT3G19290.5 | 47.664 | 107 | 52 | 2 | 219 | 325 | 329 | 431 | 4.97e-17 | 81.6 |
| Msa0219040 | AT3G19290.5 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.47e-16 | 80.5 |
| Msa0219040 | AT3G19290.3 | 47.664 | 107 | 53 | 2 | 219 | 325 | 329 | 432 | 7.47e-17 | 81.3 |
| Msa0219040 | AT3G19290.3 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.52e-16 | 80.5 |
| Msa0219040 | AT3G19290.4 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.10e-16 | 80.5 |
| Msa0219040 | AT3G19290.4 | 54.321 | 81 | 37 | 0 | 219 | 299 | 329 | 409 | 9.12e-16 | 77.8 |
| Msa0219040 | AT3G19290.2 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.45e-16 | 80.5 |
| Msa0219040 | AT2G17770.2 | 31.100 | 209 | 117 | 8 | 100 | 301 | 1 | 189 | 6.38e-13 | 67.0 |
| Msa0219040 | AT5G42910.1 | 38.095 | 126 | 55 | 5 | 24 | 146 | 21 | 126 | 1.23e-12 | 68.6 |
| Msa0219040 | AT1G03970.1 | 26.667 | 210 | 99 | 4 | 98 | 300 | 85 | 246 | 2.59e-12 | 66.6 |
Find 63 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCACCAGGTTGTGCTTAT+AGG | 0.185713 | 2_1:-66517487 | None:intergenic |
| AATCATAATGGCAATGTTTC+AGG | 0.221412 | 2_1:+66516448 | Msa0219040:CDS |
| TCTCTGTCCCTCCTCCAATT+TGG | 0.252757 | 2_1:+66516245 | Msa0219040:CDS |
| TTGAATATTGCAAGTTGTTA+TGG | 0.294474 | 2_1:+66516484 | Msa0219040:CDS |
| AATCAAGTGGGTGTAGTAAT+AGG | 0.330386 | 2_1:+66516644 | Msa0219040:CDS |
| TGAAAATCTAAAACAAGTTC+TGG | 0.355048 | 2_1:+66517139 | Msa0219040:CDS |
| GTCATTGAGGCTTGTTCACC+AGG | 0.361408 | 2_1:-66517500 | None:intergenic |
| AACACTTGGAGAAATGAGTT+TGG | 0.378783 | 2_1:+66516369 | Msa0219040:CDS |
| GCATTCAACAAAGGCTCAAA+AGG | 0.385055 | 2_1:+66517435 | Msa0219040:CDS |
| CTTCGCTCCACTACAACTTC+AGG | 0.394469 | 2_1:-66516688 | None:intergenic |
| ACTTACCTCTTGTTTCCTCT+TGG | 0.402763 | 2_1:-66517297 | None:intergenic |
| TGTTATTGTGTGACAACATT+TGG | 0.412341 | 2_1:-66516573 | None:intergenic |
| AGAATGAATTACCAAGTTGT+TGG | 0.415586 | 2_1:-66516225 | None:intergenic |
| ACTCAATGTGTGTCTAGAAA+TGG | 0.419253 | 2_1:+66516538 | Msa0219040:CDS |
| AGCTCTTTCCACTCTTGCAT+TGG | 0.422494 | 2_1:-66516090 | None:intergenic |
| GAGGATTTCTTAGTAAAAGC+TGG | 0.422923 | 2_1:+66516391 | Msa0219040:CDS |
| TGCAAGAGTGGAAAGAGCTT+TGG | 0.423243 | 2_1:+66516094 | Msa0219040:CDS |
| ATGAATTCCTTGCCAGCATA+TGG | 0.439595 | 2_1:+66516131 | Msa0219040:CDS |
| TTGCAAGTTGTTATGGTTTG+AGG | 0.440862 | 2_1:+66516491 | Msa0219040:CDS |
| GAATGAATTACCAAGTTGTT+GGG | 0.445076 | 2_1:-66516224 | None:intergenic |
| TCTTGCATTGGAACTCATCA+AGG | 0.446472 | 2_1:-66516078 | None:intergenic |
| TTGCCATTCAAGAATCATAA+TGG | 0.446766 | 2_1:+66516436 | Msa0219040:CDS |
| TTGCCATTATGATTCTTGAA+TGG | 0.449693 | 2_1:-66516439 | None:intergenic |
| TTATGGTTTGAGGCCTTCAA+TGG | 0.451042 | 2_1:+66516501 | Msa0219040:CDS |
| GAAAATCCCATTCCCATTGA+AGG | 0.469209 | 2_1:-66516514 | None:intergenic |
| AGAAAACTGTGGATGAAGTT+TGG | 0.470434 | 2_1:+66516269 | Msa0219040:CDS |
| TTGAGGCCTTCAATGGGAAT+GGG | 0.472705 | 2_1:+66516508 | Msa0219040:CDS |
| CTCAAGAAGCAACAAACACT+TGG | 0.475735 | 2_1:+66516355 | Msa0219040:CDS |
| TTATTTGTTTCTTTGAATTG+TGG | 0.479374 | 2_1:-66516313 | None:intergenic |
| CACACCGTTTCCCAACAACT+TGG | 0.481051 | 2_1:+66516214 | Msa0219040:CDS |
| GCTTCTGCTTGTTCTTGCAA+TGG | 0.484450 | 2_1:-66516010 | None:intergenic |
| TTTGAGGCCTTCAATGGGAA+TGG | 0.489129 | 2_1:+66516507 | Msa0219040:CDS |
| ATTACCAAGTTGTTGGGAAA+CGG | 0.492082 | 2_1:-66516218 | None:intergenic |
| TTGTTTCTTTGAATTGTGGT+TGG | 0.500429 | 2_1:-66516309 | None:intergenic |
| AATAGGAAGAGGATAATTGA+TGG | 0.515045 | 2_1:+66516661 | Msa0219040:CDS |
| GTCATTAGAACTCCATATGC+TGG | 0.516405 | 2_1:-66516143 | None:intergenic |
| GTGGGTGTAGTAATAGGAAG+AGG | 0.522464 | 2_1:+66516650 | Msa0219040:CDS |
| ACTTGGAGAAATGAGTTTGG+AGG | 0.522848 | 2_1:+66516372 | Msa0219040:CDS |
| AAGGAATTCATCCATGTTGA+GGG | 0.524720 | 2_1:-66516119 | None:intergenic |
| TAACAACTTGCAATATTCAA+TGG | 0.527054 | 2_1:-66516481 | None:intergenic |
| TTGTCACACAATAACAACTT+AGG | 0.536827 | 2_1:+66516580 | Msa0219040:CDS |
| ATCTAATTGTTGTAGAGCCA+TGG | 0.537356 | 2_1:-66515978 | None:intergenic |
| TATGGTTTGAGGCCTTCAAT+GGG | 0.547796 | 2_1:+66516502 | Msa0219040:CDS |
| TCGTTCTCGAGCAAGAAGAC+AGG | 0.556810 | 2_1:+66516747 | Msa0219040:CDS |
| GAGCTTTGGTTCCCTCAACA+TGG | 0.562617 | 2_1:+66516108 | Msa0219040:CDS |
| CATTCAACAAAGGCTCAAAA+GGG | 0.564482 | 2_1:+66517436 | Msa0219040:CDS |
| GGCATATACATTAGAGCTAG+AGG | 0.565644 | 2_1:+66517088 | Msa0219040:intron |
| CAAGGAATTCATCCATGTTG+AGG | 0.566750 | 2_1:-66516120 | None:intergenic |
| TAGAACTCCATATGCTGGCA+AGG | 0.571014 | 2_1:-66516138 | None:intergenic |
| CAATAACAACTTAGGAGTGA+AGG | 0.581916 | 2_1:+66516588 | Msa0219040:CDS |
| TGGTCCTCCTGAAGTTGTAG+TGG | 0.592007 | 2_1:+66516681 | Msa0219040:CDS |
| TCTACAACAATTAGATCAAG+AGG | 0.593387 | 2_1:+66515985 | Msa0219040:CDS |
| TCCAATTTGGAAGAAAACTG+TGG | 0.593419 | 2_1:+66516258 | Msa0219040:CDS |
| GCAACGAAAGCATTCAACAA+AGG | 0.598492 | 2_1:+66517426 | Msa0219040:CDS |
| CTGAAGTTGTAGTGGAGCGA+AGG | 0.600061 | 2_1:+66516689 | Msa0219040:CDS |
| GATGAGTTCCAATGCAAGAG+TGG | 0.607955 | 2_1:+66516082 | Msa0219040:CDS |
| CTTGCATTGGAACTCATCAA+GGG | 0.629128 | 2_1:-66516077 | None:intergenic |
| CGCTCCACTACAACTTCAGG+AGG | 0.642123 | 2_1:-66516685 | None:intergenic |
| AGGCTGAAGCTGAGACCAAG+AGG | 0.647700 | 2_1:+66517282 | Msa0219040:intron |
| TGAGACCAAGAGGAAACAAG+AGG | 0.662863 | 2_1:+66517292 | Msa0219040:CDS |
| GAAGGCCTATAAGCACAACC+TGG | 0.668432 | 2_1:+66517482 | Msa0219040:CDS |
| CAAAGCTTGACTGAATCAAG+TGG | 0.677316 | 2_1:+66516631 | Msa0219040:CDS |
| AAAGCTTGACTGAATCAAGT+GGG | 0.724655 | 2_1:+66516632 | Msa0219040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTATTTAAATATGAAAT+AGG | + | chr2_1:66517262-66517281 | Msa0219040:intron | 10.0% |
| !! | TTTCTATTTAAATATGAAAT+AGG | + | chr2_1:66517262-66517281 | Msa0219040:intron | 10.0% |
| !!! | ATTGCAAGATATTTTTTTAT+AGG | - | chr2_1:66517065-66517084 | None:intergenic | 15.0% |
| !!! | AAGTTGATATTTATATAACA+AGG | + | chr2_1:66517343-66517362 | Msa0219040:intron | 15.0% |
| !!! | AGTTGATATTTATATAACAA+GGG | + | chr2_1:66517344-66517363 | Msa0219040:intron | 15.0% |
| !!! | ATTGCAAGATATTTTTTTAT+AGG | - | chr2_1:66517065-66517084 | None:intergenic | 15.0% |
| !!! | AAGTTGATATTTATATAACA+AGG | + | chr2_1:66517343-66517362 | Msa0219040:intron | 15.0% |
| !!! | AGTTGATATTTATATAACAA+GGG | + | chr2_1:66517344-66517363 | Msa0219040:intron | 15.0% |
| !!! | TTATTTGTTTCTTTGAATTG+TGG | - | chr2_1:66516316-66516335 | None:intergenic | 20.0% |
| !!! | AAAATGCAGGTTTTAAAAAA+AGG | - | chr2_1:66516919-66516938 | None:intergenic | 20.0% |
| !!! | TTATTTGTTTCTTTGAATTG+TGG | - | chr2_1:66516316-66516335 | None:intergenic | 20.0% |
| !!! | AAAATGCAGGTTTTAAAAAA+AGG | - | chr2_1:66516919-66516938 | None:intergenic | 20.0% |
| ! | TAACAACTTGCAATATTCAA+TGG | - | chr2_1:66516484-66516503 | None:intergenic | 25.0% |
| ! | TTGAATATTGCAAGTTGTTA+TGG | + | chr2_1:66516484-66516503 | Msa0219040:CDS | 25.0% |
| ! | AATGTTGAAAAATCGTGAAT+CGG | + | chr2_1:66516720-66516739 | Msa0219040:CDS | 25.0% |
| !! | CTTTGTTATAGTTCTATGTT+AGG | + | chr2_1:66516794-66516813 | Msa0219040:intron | 25.0% |
| ! | CTTGATTTCGCAATAAATTA+TGG | + | chr2_1:66516855-66516874 | Msa0219040:intron | 25.0% |
| ! | AAAAAAATATCTTGCAATGC+AGG | + | chr2_1:66517067-66517086 | Msa0219040:intron | 25.0% |
| !! | TGAAAATCTAAAACAAGTTC+TGG | + | chr2_1:66517139-66517158 | Msa0219040:CDS | 25.0% |
| !!! | TTCTTGTTTTTGTTTCTTCA+TGG | + | chr2_1:66517212-66517231 | Msa0219040:intron | 25.0% |
| ! | AAAAATTAAGAGCAATGAGA+AGG | + | chr2_1:66517464-66517483 | Msa0219040:CDS | 25.0% |
| ! | TAACAACTTGCAATATTCAA+TGG | - | chr2_1:66516484-66516503 | None:intergenic | 25.0% |
| ! | TTGAATATTGCAAGTTGTTA+TGG | + | chr2_1:66516484-66516503 | Msa0219040:CDS | 25.0% |
| ! | AATGTTGAAAAATCGTGAAT+CGG | + | chr2_1:66516720-66516739 | Msa0219040:CDS | 25.0% |
| !! | CTTTGTTATAGTTCTATGTT+AGG | + | chr2_1:66516794-66516813 | Msa0219040:intron | 25.0% |
| ! | CTTGATTTCGCAATAAATTA+TGG | + | chr2_1:66516855-66516874 | Msa0219040:intron | 25.0% |
| ! | AAAAAAATATCTTGCAATGC+AGG | + | chr2_1:66517067-66517086 | Msa0219040:intron | 25.0% |
| !! | TGAAAATCTAAAACAAGTTC+TGG | + | chr2_1:66517139-66517158 | Msa0219040:CDS | 25.0% |
| !!! | TTCTTGTTTTTGTTTCTTCA+TGG | + | chr2_1:66517212-66517231 | Msa0219040:intron | 25.0% |
| ! | AAAAATTAAGAGCAATGAGA+AGG | + | chr2_1:66517464-66517483 | Msa0219040:CDS | 25.0% |
| TCTACAACAATTAGATCAAG+AGG | + | chr2_1:66515985-66516004 | Msa0219040:CDS | 30.0% | |
| !!! | AGTATTGAGTTTTGTTTGCT+TGG | - | chr2_1:66516049-66516068 | None:intergenic | 30.0% |
| TGCTAAAAATGTTGCAACAA+CGG | + | chr2_1:66516189-66516208 | Msa0219040:CDS | 30.0% | |
| GAATGAATTACCAAGTTGTT+GGG | - | chr2_1:66516227-66516246 | None:intergenic | 30.0% | |
| AGAATGAATTACCAAGTTGT+TGG | - | chr2_1:66516228-66516247 | None:intergenic | 30.0% | |
| ! | TTGTTTCTTTGAATTGTGGT+TGG | - | chr2_1:66516312-66516331 | None:intergenic | 30.0% |
| TTGCCATTCAAGAATCATAA+TGG | + | chr2_1:66516436-66516455 | Msa0219040:CDS | 30.0% | |
| TTGCCATTATGATTCTTGAA+TGG | - | chr2_1:66516442-66516461 | None:intergenic | 30.0% | |
| AATCATAATGGCAATGTTTC+AGG | + | chr2_1:66516448-66516467 | Msa0219040:CDS | 30.0% | |
| TGTTATTGTGTGACAACATT+TGG | - | chr2_1:66516576-66516595 | None:intergenic | 30.0% | |
| TTGTCACACAATAACAACTT+AGG | + | chr2_1:66516580-66516599 | Msa0219040:CDS | 30.0% | |
| AATAGGAAGAGGATAATTGA+TGG | + | chr2_1:66516661-66516680 | Msa0219040:CDS | 30.0% | |
| CATAGAACTATAACAAAGAG+TGG | - | chr2_1:66516792-66516811 | None:intergenic | 30.0% | |
| TAATGTGAATCACAAAATGC+AGG | - | chr2_1:66516932-66516951 | None:intergenic | 30.0% | |
| TCTACAACAATTAGATCAAG+AGG | + | chr2_1:66515985-66516004 | Msa0219040:CDS | 30.0% | |
| !!! | AGTATTGAGTTTTGTTTGCT+TGG | - | chr2_1:66516049-66516068 | None:intergenic | 30.0% |
| TGCTAAAAATGTTGCAACAA+CGG | + | chr2_1:66516189-66516208 | Msa0219040:CDS | 30.0% | |
| GAATGAATTACCAAGTTGTT+GGG | - | chr2_1:66516227-66516246 | None:intergenic | 30.0% | |
| AGAATGAATTACCAAGTTGT+TGG | - | chr2_1:66516228-66516247 | None:intergenic | 30.0% | |
| ! | TTGTTTCTTTGAATTGTGGT+TGG | - | chr2_1:66516312-66516331 | None:intergenic | 30.0% |
| TTGCCATTCAAGAATCATAA+TGG | + | chr2_1:66516436-66516455 | Msa0219040:CDS | 30.0% | |
| TTGCCATTATGATTCTTGAA+TGG | - | chr2_1:66516442-66516461 | None:intergenic | 30.0% | |
| AATCATAATGGCAATGTTTC+AGG | + | chr2_1:66516448-66516467 | Msa0219040:CDS | 30.0% | |
| TGTTATTGTGTGACAACATT+TGG | - | chr2_1:66516576-66516595 | None:intergenic | 30.0% | |
| TTGTCACACAATAACAACTT+AGG | + | chr2_1:66516580-66516599 | Msa0219040:CDS | 30.0% | |
| AATAGGAAGAGGATAATTGA+TGG | + | chr2_1:66516661-66516680 | Msa0219040:CDS | 30.0% | |
| CATAGAACTATAACAAAGAG+TGG | - | chr2_1:66516792-66516811 | None:intergenic | 30.0% | |
| TAATGTGAATCACAAAATGC+AGG | - | chr2_1:66516932-66516951 | None:intergenic | 30.0% | |
| AAGGAATTCATCCATGTTGA+GGG | - | chr2_1:66516122-66516141 | None:intergenic | 35.0% | |
| ATTACCAAGTTGTTGGGAAA+CGG | - | chr2_1:66516221-66516240 | None:intergenic | 35.0% | |
| ! | TTTTCTTCCAAATTGGAGGA+GGG | - | chr2_1:66516255-66516274 | None:intergenic | 35.0% |
| ! | ACAGTTTTCTTCCAAATTGG+AGG | - | chr2_1:66516259-66516278 | None:intergenic | 35.0% |
| TCCAATTTGGAAGAAAACTG+TGG | + | chr2_1:66516258-66516277 | Msa0219040:CDS | 35.0% | |
| ! | TCCACAGTTTTCTTCCAAAT+TGG | - | chr2_1:66516262-66516281 | None:intergenic | 35.0% |
| AGAAAACTGTGGATGAAGTT+TGG | + | chr2_1:66516269-66516288 | Msa0219040:CDS | 35.0% | |
| AACACTTGGAGAAATGAGTT+TGG | + | chr2_1:66516369-66516388 | Msa0219040:CDS | 35.0% | |
| GAGGATTTCTTAGTAAAAGC+TGG | + | chr2_1:66516391-66516410 | Msa0219040:CDS | 35.0% | |
| TTGCAAGTTGTTATGGTTTG+AGG | + | chr2_1:66516491-66516510 | Msa0219040:CDS | 35.0% | |
| ACTCAATGTGTGTCTAGAAA+TGG | + | chr2_1:66516538-66516557 | Msa0219040:CDS | 35.0% | |
| CAATAACAACTTAGGAGTGA+AGG | + | chr2_1:66516588-66516607 | Msa0219040:CDS | 35.0% | |
| AAAGCTTGACTGAATCAAGT+GGG | + | chr2_1:66516632-66516651 | Msa0219040:CDS | 35.0% | |
| AATCAAGTGGGTGTAGTAAT+AGG | + | chr2_1:66516644-66516663 | Msa0219040:CDS | 35.0% | |
| TGTGATTCACATTAAGCTCA+AGG | + | chr2_1:66516938-66516957 | Msa0219040:intron | 35.0% | |
| TGTTAAGGCAACCTAAATTG+TGG | - | chr2_1:66516984-66517003 | None:intergenic | 35.0% | |
| ATGTTAGCAACTAGTTACCA+AGG | - | chr2_1:66517039-66517058 | None:intergenic | 35.0% | |
| CATTCAACAAAGGCTCAAAA+GGG | + | chr2_1:66517436-66517455 | Msa0219040:CDS | 35.0% | |
| AAGGAATTCATCCATGTTGA+GGG | - | chr2_1:66516122-66516141 | None:intergenic | 35.0% | |
| ATTACCAAGTTGTTGGGAAA+CGG | - | chr2_1:66516221-66516240 | None:intergenic | 35.0% | |
| ! | TTTTCTTCCAAATTGGAGGA+GGG | - | chr2_1:66516255-66516274 | None:intergenic | 35.0% |
| ! | ACAGTTTTCTTCCAAATTGG+AGG | - | chr2_1:66516259-66516278 | None:intergenic | 35.0% |
| TCCAATTTGGAAGAAAACTG+TGG | + | chr2_1:66516258-66516277 | Msa0219040:CDS | 35.0% | |
| ! | TCCACAGTTTTCTTCCAAAT+TGG | - | chr2_1:66516262-66516281 | None:intergenic | 35.0% |
| AGAAAACTGTGGATGAAGTT+TGG | + | chr2_1:66516269-66516288 | Msa0219040:CDS | 35.0% | |
| AACACTTGGAGAAATGAGTT+TGG | + | chr2_1:66516369-66516388 | Msa0219040:CDS | 35.0% | |
| GAGGATTTCTTAGTAAAAGC+TGG | + | chr2_1:66516391-66516410 | Msa0219040:CDS | 35.0% | |
| TTGCAAGTTGTTATGGTTTG+AGG | + | chr2_1:66516491-66516510 | Msa0219040:CDS | 35.0% | |
| ACTCAATGTGTGTCTAGAAA+TGG | + | chr2_1:66516538-66516557 | Msa0219040:CDS | 35.0% | |
| CAATAACAACTTAGGAGTGA+AGG | + | chr2_1:66516588-66516607 | Msa0219040:CDS | 35.0% | |
| AAAGCTTGACTGAATCAAGT+GGG | + | chr2_1:66516632-66516651 | Msa0219040:CDS | 35.0% | |
| AATCAAGTGGGTGTAGTAAT+AGG | + | chr2_1:66516644-66516663 | Msa0219040:CDS | 35.0% | |
| TGTGATTCACATTAAGCTCA+AGG | + | chr2_1:66516938-66516957 | Msa0219040:intron | 35.0% | |
| TGTTAAGGCAACCTAAATTG+TGG | - | chr2_1:66516984-66517003 | None:intergenic | 35.0% | |
| ATGTTAGCAACTAGTTACCA+AGG | - | chr2_1:66517039-66517058 | None:intergenic | 35.0% | |
| CATTCAACAAAGGCTCAAAA+GGG | + | chr2_1:66517436-66517455 | Msa0219040:CDS | 35.0% | |
| CTTGCATTGGAACTCATCAA+GGG | - | chr2_1:66516080-66516099 | None:intergenic | 40.0% | |
| TCTTGCATTGGAACTCATCA+AGG | - | chr2_1:66516081-66516100 | None:intergenic | 40.0% | |
| CAAGGAATTCATCCATGTTG+AGG | - | chr2_1:66516123-66516142 | None:intergenic | 40.0% | |
| ATGAATTCCTTGCCAGCATA+TGG | + | chr2_1:66516131-66516150 | Msa0219040:CDS | 40.0% | |
| GTCATTAGAACTCCATATGC+TGG | - | chr2_1:66516146-66516165 | None:intergenic | 40.0% | |
| ! | GTTTTCTTCCAAATTGGAGG+AGG | - | chr2_1:66516256-66516275 | None:intergenic | 40.0% |
| ! | TGAGTGTCTCGCTTCTTTTA+AGG | - | chr2_1:66516339-66516358 | None:intergenic | 40.0% |
| CTCAAGAAGCAACAAACACT+TGG | + | chr2_1:66516355-66516374 | Msa0219040:CDS | 40.0% | |
| ACTTGGAGAAATGAGTTTGG+AGG | + | chr2_1:66516372-66516391 | Msa0219040:CDS | 40.0% | |
| ! | TTATGGTTTGAGGCCTTCAA+TGG | + | chr2_1:66516501-66516520 | Msa0219040:CDS | 40.0% |
| ! | TATGGTTTGAGGCCTTCAAT+GGG | + | chr2_1:66516502-66516521 | Msa0219040:CDS | 40.0% |
| GAAAATCCCATTCCCATTGA+AGG | - | chr2_1:66516517-66516536 | None:intergenic | 40.0% | |
| CAAAGCTTGACTGAATCAAG+TGG | + | chr2_1:66516631-66516650 | Msa0219040:CDS | 40.0% | |
| AAATTATGGTCGAATGCGAC+AGG | + | chr2_1:66516869-66516888 | Msa0219040:intron | 40.0% | |
| TACGTCTGTGACCACAATTT+AGG | + | chr2_1:66516970-66516989 | Msa0219040:intron | 40.0% | |
| TTGTACCAGACATGATATGG+CGG | - | chr2_1:66517015-66517034 | None:intergenic | 40.0% | |
| GGTTTGTACCAGACATGATA+TGG | - | chr2_1:66517018-66517037 | None:intergenic | 40.0% | |
| ATCATGTCTGGTACAAACCT+TGG | + | chr2_1:66517019-66517038 | Msa0219040:intron | 40.0% | |
| GGCATATACATTAGAGCTAG+AGG | + | chr2_1:66517088-66517107 | Msa0219040:intron | 40.0% | |
| ! | ACTTACCTCTTGTTTCCTCT+TGG | - | chr2_1:66517300-66517319 | None:intergenic | 40.0% |
| !! | GCAACGAAAGCATTCAACAA+AGG | + | chr2_1:66517426-66517445 | Msa0219040:CDS | 40.0% |
| GCATTCAACAAAGGCTCAAA+AGG | + | chr2_1:66517435-66517454 | Msa0219040:CDS | 40.0% | |
| CTTGCATTGGAACTCATCAA+GGG | - | chr2_1:66516080-66516099 | None:intergenic | 40.0% | |
| TCTTGCATTGGAACTCATCA+AGG | - | chr2_1:66516081-66516100 | None:intergenic | 40.0% | |
| CAAGGAATTCATCCATGTTG+AGG | - | chr2_1:66516123-66516142 | None:intergenic | 40.0% | |
| ATGAATTCCTTGCCAGCATA+TGG | + | chr2_1:66516131-66516150 | Msa0219040:CDS | 40.0% | |
| GTCATTAGAACTCCATATGC+TGG | - | chr2_1:66516146-66516165 | None:intergenic | 40.0% | |
| ! | GTTTTCTTCCAAATTGGAGG+AGG | - | chr2_1:66516256-66516275 | None:intergenic | 40.0% |
| ! | TGAGTGTCTCGCTTCTTTTA+AGG | - | chr2_1:66516339-66516358 | None:intergenic | 40.0% |
| CTCAAGAAGCAACAAACACT+TGG | + | chr2_1:66516355-66516374 | Msa0219040:CDS | 40.0% | |
| ACTTGGAGAAATGAGTTTGG+AGG | + | chr2_1:66516372-66516391 | Msa0219040:CDS | 40.0% | |
| ! | TTATGGTTTGAGGCCTTCAA+TGG | + | chr2_1:66516501-66516520 | Msa0219040:CDS | 40.0% |
| ! | TATGGTTTGAGGCCTTCAAT+GGG | + | chr2_1:66516502-66516521 | Msa0219040:CDS | 40.0% |
| GAAAATCCCATTCCCATTGA+AGG | - | chr2_1:66516517-66516536 | None:intergenic | 40.0% | |
| CAAAGCTTGACTGAATCAAG+TGG | + | chr2_1:66516631-66516650 | Msa0219040:CDS | 40.0% | |
| AAATTATGGTCGAATGCGAC+AGG | + | chr2_1:66516869-66516888 | Msa0219040:intron | 40.0% | |
| TACGTCTGTGACCACAATTT+AGG | + | chr2_1:66516970-66516989 | Msa0219040:intron | 40.0% | |
| TTGTACCAGACATGATATGG+CGG | - | chr2_1:66517015-66517034 | None:intergenic | 40.0% | |
| GGTTTGTACCAGACATGATA+TGG | - | chr2_1:66517018-66517037 | None:intergenic | 40.0% | |
| ATCATGTCTGGTACAAACCT+TGG | + | chr2_1:66517019-66517038 | Msa0219040:intron | 40.0% | |
| GGCATATACATTAGAGCTAG+AGG | + | chr2_1:66517088-66517107 | Msa0219040:intron | 40.0% | |
| ! | ACTTACCTCTTGTTTCCTCT+TGG | - | chr2_1:66517300-66517319 | None:intergenic | 40.0% |
| !! | GCAACGAAAGCATTCAACAA+AGG | + | chr2_1:66517426-66517445 | Msa0219040:CDS | 40.0% |
| GCATTCAACAAAGGCTCAAA+AGG | + | chr2_1:66517435-66517454 | Msa0219040:CDS | 40.0% | |
| GCTTCTGCTTGTTCTTGCAA+TGG | - | chr2_1:66516013-66516032 | None:intergenic | 45.0% | |
| GATGAGTTCCAATGCAAGAG+TGG | + | chr2_1:66516082-66516101 | Msa0219040:CDS | 45.0% | |
| AGCTCTTTCCACTCTTGCAT+TGG | - | chr2_1:66516093-66516112 | None:intergenic | 45.0% | |
| TGCAAGAGTGGAAAGAGCTT+TGG | + | chr2_1:66516094-66516113 | Msa0219040:CDS | 45.0% | |
| TAGAACTCCATATGCTGGCA+AGG | - | chr2_1:66516141-66516160 | None:intergenic | 45.0% | |
| ! | TTTGAGGCCTTCAATGGGAA+TGG | + | chr2_1:66516507-66516526 | Msa0219040:CDS | 45.0% |
| TTGAGGCCTTCAATGGGAAT+GGG | + | chr2_1:66516508-66516527 | Msa0219040:CDS | 45.0% | |
| ! | AGGAGTGAAGGATTTTGCTG+TGG | + | chr2_1:66516600-66516619 | Msa0219040:CDS | 45.0% |
| GTGGGTGTAGTAATAGGAAG+AGG | + | chr2_1:66516650-66516669 | Msa0219040:CDS | 45.0% | |
| ATGGCGGTCAAATGCTGTTA+AGG | - | chr2_1:66516999-66517018 | None:intergenic | 45.0% | |
| TTTGACCGCCATATCATGTC+TGG | + | chr2_1:66517007-66517026 | Msa0219040:intron | 45.0% | |
| TGAGACCAAGAGGAAACAAG+AGG | + | chr2_1:66517292-66517311 | Msa0219040:CDS | 45.0% | |
| GCTTCTGCTTGTTCTTGCAA+TGG | - | chr2_1:66516013-66516032 | None:intergenic | 45.0% | |
| GATGAGTTCCAATGCAAGAG+TGG | + | chr2_1:66516082-66516101 | Msa0219040:CDS | 45.0% | |
| AGCTCTTTCCACTCTTGCAT+TGG | - | chr2_1:66516093-66516112 | None:intergenic | 45.0% | |
| TGCAAGAGTGGAAAGAGCTT+TGG | + | chr2_1:66516094-66516113 | Msa0219040:CDS | 45.0% | |
| TAGAACTCCATATGCTGGCA+AGG | - | chr2_1:66516141-66516160 | None:intergenic | 45.0% | |
| ! | TTTGAGGCCTTCAATGGGAA+TGG | + | chr2_1:66516507-66516526 | Msa0219040:CDS | 45.0% |
| TTGAGGCCTTCAATGGGAAT+GGG | + | chr2_1:66516508-66516527 | Msa0219040:CDS | 45.0% | |
| ! | AGGAGTGAAGGATTTTGCTG+TGG | + | chr2_1:66516600-66516619 | Msa0219040:CDS | 45.0% |
| GTGGGTGTAGTAATAGGAAG+AGG | + | chr2_1:66516650-66516669 | Msa0219040:CDS | 45.0% | |
| ATGGCGGTCAAATGCTGTTA+AGG | - | chr2_1:66516999-66517018 | None:intergenic | 45.0% | |
| TTTGACCGCCATATCATGTC+TGG | + | chr2_1:66517007-66517026 | Msa0219040:intron | 45.0% | |
| TGAGACCAAGAGGAAACAAG+AGG | + | chr2_1:66517292-66517311 | Msa0219040:CDS | 45.0% | |
| ! | GAGCTTTGGTTCCCTCAACA+TGG | + | chr2_1:66516108-66516127 | Msa0219040:CDS | 50.0% |
| CACACCGTTTCCCAACAACT+TGG | + | chr2_1:66516214-66516233 | Msa0219040:CDS | 50.0% | |
| TCTCTGTCCCTCCTCCAATT+TGG | + | chr2_1:66516245-66516264 | Msa0219040:CDS | 50.0% | |
| TGGTCCTCCTGAAGTTGTAG+TGG | + | chr2_1:66516681-66516700 | Msa0219040:CDS | 50.0% | |
| CTTCGCTCCACTACAACTTC+AGG | - | chr2_1:66516691-66516710 | None:intergenic | 50.0% | |
| ! | CTGAAGTTGTAGTGGAGCGA+AGG | + | chr2_1:66516689-66516708 | Msa0219040:CDS | 50.0% |
| TCGTTCTCGAGCAAGAAGAC+AGG | + | chr2_1:66516747-66516766 | Msa0219040:CDS | 50.0% | |
| GAATTGTGAAGCGACAGCGA+AGG | - | chr2_1:66516836-66516855 | None:intergenic | 50.0% | |
| GAAGGCCTATAAGCACAACC+TGG | + | chr2_1:66517482-66517501 | Msa0219040:CDS | 50.0% | |
| ! | GAGCTTTGGTTCCCTCAACA+TGG | + | chr2_1:66516108-66516127 | Msa0219040:CDS | 50.0% |
| CACACCGTTTCCCAACAACT+TGG | + | chr2_1:66516214-66516233 | Msa0219040:CDS | 50.0% | |
| TCTCTGTCCCTCCTCCAATT+TGG | + | chr2_1:66516245-66516264 | Msa0219040:CDS | 50.0% | |
| TGGTCCTCCTGAAGTTGTAG+TGG | + | chr2_1:66516681-66516700 | Msa0219040:CDS | 50.0% | |
| CTTCGCTCCACTACAACTTC+AGG | - | chr2_1:66516691-66516710 | None:intergenic | 50.0% | |
| ! | CTGAAGTTGTAGTGGAGCGA+AGG | + | chr2_1:66516689-66516708 | Msa0219040:CDS | 50.0% |
| TCGTTCTCGAGCAAGAAGAC+AGG | + | chr2_1:66516747-66516766 | Msa0219040:CDS | 50.0% | |
| GAATTGTGAAGCGACAGCGA+AGG | - | chr2_1:66516836-66516855 | None:intergenic | 50.0% | |
| GAAGGCCTATAAGCACAACC+TGG | + | chr2_1:66517482-66517501 | Msa0219040:CDS | 50.0% | |
| CGCTCCACTACAACTTCAGG+AGG | - | chr2_1:66516688-66516707 | None:intergenic | 55.0% | |
| GACAGGTTCAGCCTCGATCA+CGG | + | chr2_1:66516886-66516905 | Msa0219040:intron | 55.0% | |
| AAGGTCTGTGACCGTGATCG+AGG | - | chr2_1:66516900-66516919 | None:intergenic | 55.0% | |
| AGGCTGAAGCTGAGACCAAG+AGG | + | chr2_1:66517282-66517301 | Msa0219040:intron | 55.0% | |
| CGCTCCACTACAACTTCAGG+AGG | - | chr2_1:66516688-66516707 | None:intergenic | 55.0% | |
| GACAGGTTCAGCCTCGATCA+CGG | + | chr2_1:66516886-66516905 | Msa0219040:intron | 55.0% | |
| AAGGTCTGTGACCGTGATCG+AGG | - | chr2_1:66516900-66516919 | None:intergenic | 55.0% | |
| AGGCTGAAGCTGAGACCAAG+AGG | + | chr2_1:66517282-66517301 | Msa0219040:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 66515980 | 66517507 | 66515980 | ID=Msa0219040;Name=Msa0219040 |
| chr2_1 | mRNA | 66515980 | 66517507 | 66515980 | ID=Msa0219040-mRNA-1;Parent=Msa0219040;Name=Msa0219040-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|4|0|325 |
| chr2_1 | exon | 66515980 | 66516768 | 66515980 | ID=Msa0219040-mRNA-1:exon:18735;Parent=Msa0219040-mRNA-1 |
| chr2_1 | exon | 66517089 | 66517160 | 66517089 | ID=Msa0219040-mRNA-1:exon:18736;Parent=Msa0219040-mRNA-1 |
| chr2_1 | exon | 66517284 | 66517313 | 66517284 | ID=Msa0219040-mRNA-1:exon:18737;Parent=Msa0219040-mRNA-1 |
| chr2_1 | exon | 66517421 | 66517507 | 66517421 | ID=Msa0219040-mRNA-1:exon:18738;Parent=Msa0219040-mRNA-1 |
| chr2_1 | CDS | 66515980 | 66516768 | 66515980 | ID=Msa0219040-mRNA-1:cds;Parent=Msa0219040-mRNA-1 |
| chr2_1 | CDS | 66517089 | 66517160 | 66517089 | ID=Msa0219040-mRNA-1:cds;Parent=Msa0219040-mRNA-1 |
| chr2_1 | CDS | 66517284 | 66517313 | 66517284 | ID=Msa0219040-mRNA-1:cds;Parent=Msa0219040-mRNA-1 |
| chr2_1 | CDS | 66517421 | 66517507 | 66517421 | ID=Msa0219040-mRNA-1:cds;Parent=Msa0219040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
