AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0298030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298030 MtrunA17_Chr2g0321381 92.708 288 20 1 1 288 1 287 0.0 525
Msa0298030 MtrunA17_Chr2g0321411 66.871 326 69 6 1 325 1 288 5.19e-147 415
Msa0298030 MtrunA17_Chr8g0355121 37.676 284 130 11 25 285 26 285 1.23e-36 134
Msa0298030 MtrunA17_Chr3g0080341 34.915 295 146 13 20 285 17 294 1.79e-35 130
Msa0298030 MtrunA17_Chr7g0254991 34.314 306 150 11 12 286 8 293 2.62e-32 122
Msa0298030 MtrunA17_Chr7g0266211 47.761 134 57 4 29 149 45 178 1.61e-29 117
Msa0298030 MtrunA17_Chr7g0266211 46.154 169 59 4 168 319 272 425 7.48e-25 103
Msa0298030 MtrunA17_Chr6g0460301 36.271 295 137 12 24 285 17 293 3.29e-25 103
Msa0298030 MtrunA17_Chr3g0133971 42.748 131 60 6 24 151 28 146 6.90e-20 89.7
Msa0298030 MtrunA17_Chr3g0133971 47.525 101 41 3 229 325 339 431 6.05e-16 78.2
Msa0298030 MtrunA17_Chr4g0044771 51.163 86 32 2 241 325 300 376 1.97e-15 76.3
Msa0298030 MtrunA17_Chr4g0044771 34.559 136 69 4 24 151 19 142 7.80e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298030 AT3G44460.1 43.544 333 157 9 7 325 16 331 2.47e-66 212
Msa0298030 AT2G36270.1 35.084 419 140 12 20 320 34 438 6.26e-56 188
Msa0298030 AT2G36270.2 35.084 419 140 12 20 320 34 438 6.26e-56 188
Msa0298030 AT2G36270.3 35.115 393 127 10 20 298 34 412 5.43e-55 186
Msa0298030 AT3G56850.1 39.427 279 124 12 25 285 18 269 3.02e-40 143
Msa0298030 AT2G41070.5 34.211 266 125 7 24 286 17 235 9.38e-35 127
Msa0298030 AT2G41070.3 34.211 266 125 7 24 286 17 235 1.62e-34 127
Msa0298030 AT2G41070.1 34.211 266 125 7 24 286 17 235 1.62e-34 127
Msa0298030 AT2G41070.2 34.211 266 125 7 24 286 17 235 1.62e-34 127
Msa0298030 AT2G41070.4 34.211 266 125 7 24 286 26 244 1.89e-34 127
Msa0298030 AT1G45249.1 30.500 400 175 14 24 325 22 416 1.18e-30 120
Msa0298030 AT1G45249.3 30.170 411 173 14 24 325 22 427 1.79e-30 120
Msa0298030 AT1G49720.2 39.568 139 69 5 21 149 20 153 7.39e-20 89.7
Msa0298030 AT1G49720.2 61.667 60 23 0 240 299 310 369 3.41e-14 73.2
Msa0298030 AT1G49720.1 39.568 139 69 5 21 149 20 153 8.59e-20 89.7
Msa0298030 AT1G49720.1 51.163 86 39 1 240 325 310 392 4.93e-15 75.5
Msa0298030 AT1G49720.3 39.568 139 69 5 21 149 20 153 8.59e-20 89.7
Msa0298030 AT1G49720.3 51.163 86 39 1 240 325 310 392 4.93e-15 75.5
Msa0298030 AT1G45249.7 35.294 153 88 2 24 165 37 189 1.04e-19 89.7
Msa0298030 AT1G45249.7 50.485 103 42 4 224 325 337 431 2.53e-15 76.6
Msa0298030 AT1G45249.6 35.294 153 88 2 24 165 37 189 1.04e-19 89.7
Msa0298030 AT1G45249.6 50.485 103 42 4 224 325 337 431 2.53e-15 76.6
Msa0298030 AT1G45249.10 35.294 153 88 2 24 165 22 174 2.46e-19 88.2
Msa0298030 AT1G45249.5 35.294 153 88 2 24 165 22 174 2.46e-19 88.2
Msa0298030 AT1G45249.4 35.294 153 88 2 24 165 22 174 3.28e-19 88.2
Msa0298030 AT1G45249.8 35.294 153 88 2 24 165 22 174 3.28e-19 88.2
Msa0298030 AT1G45249.2 35.294 153 88 2 24 165 22 174 3.28e-19 88.2
Msa0298030 AT1G45249.9 35.294 153 88 2 24 165 22 174 3.28e-19 88.2
Msa0298030 AT4G34000.1 31.532 222 96 6 24 201 28 237 4.20e-18 85.1
Msa0298030 AT4G34000.1 50.000 86 41 1 240 325 371 454 1.00e-15 78.2
Msa0298030 AT4G34000.4 31.532 222 96 6 24 201 28 237 4.20e-18 85.1
Msa0298030 AT4G34000.4 50.000 86 41 1 240 325 371 454 1.00e-15 78.2
Msa0298030 AT4G34000.2 31.532 222 96 6 24 201 28 237 4.20e-18 85.1
Msa0298030 AT4G34000.2 50.000 86 41 1 240 325 371 454 1.00e-15 78.2
Msa0298030 AT4G34000.3 31.532 222 96 7 24 201 28 237 4.48e-18 85.1
Msa0298030 AT4G34000.3 73.913 46 12 0 240 285 371 416 4.88e-14 72.8
Msa0298030 AT5G44080.1 30.435 230 124 6 98 325 120 315 7.93e-18 83.2
Msa0298030 AT3G19290.1 42.029 138 64 4 194 325 304 431 5.67e-17 81.6
Msa0298030 AT3G19290.1 37.063 143 77 4 24 153 35 177 1.65e-16 80.1
Msa0298030 AT3G19290.5 42.029 138 64 4 194 325 304 431 5.67e-17 81.6
Msa0298030 AT3G19290.5 37.063 143 77 4 24 153 35 177 1.65e-16 80.1
Msa0298030 AT3G19290.3 42.029 138 65 4 194 325 304 432 7.83e-17 81.3
Msa0298030 AT3G19290.3 37.063 143 77 4 24 153 35 177 1.69e-16 80.1
Msa0298030 AT3G19290.4 37.063 143 77 4 24 153 35 177 1.34e-16 80.5
Msa0298030 AT3G19290.4 45.536 112 49 2 194 299 304 409 9.92e-16 77.8
Msa0298030 AT3G19290.2 37.063 143 77 4 24 153 35 177 1.81e-16 80.1
Msa0298030 AT2G17770.2 31.100 209 117 8 100 301 1 189 5.20e-13 67.4
Msa0298030 AT1G03970.1 30.049 203 101 5 98 300 85 246 1.28e-12 67.4
Msa0298030 AT5G42910.1 38.095 126 55 5 24 146 21 126 1.32e-12 68.2

Find 65 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCACCAGGTTGTGCTTAT+AGG 0.185713 2_3:+51974054 None:intergenic
AATCATAATGGCAATGTTTC+AGG 0.221412 2_3:-51975085 Msa0298030:CDS
TCTCTGTCCCTCCTCCAATT+TGG 0.252757 2_3:-51975288 Msa0298030:CDS
TTGAATATTGCAAGTTGTTA+TGG 0.294474 2_3:-51975049 Msa0298030:CDS
AATCAAGTGGGTGTAGTAAT+AGG 0.330386 2_3:-51974889 Msa0298030:CDS
TGAAAATCTAAAACAAGTTC+TGG 0.355048 2_3:-51974394 Msa0298030:intron
GTCATTGAGGCTTGTTCACC+AGG 0.361408 2_3:+51974041 None:intergenic
AACACTTGGAGAAATGAGTT+TGG 0.378783 2_3:-51975164 Msa0298030:CDS
GCATTCAACAAAGGCTCAAA+AGG 0.385055 2_3:-51974106 Msa0298030:CDS
TGTTATTCAGTGACAACATT+TGG 0.394761 2_3:+51974960 None:intergenic
ACTTACCTCTTGTTTCCTCT+TGG 0.402763 2_3:+51974244 None:intergenic
AGAATGAATTACCAAGTTGT+TGG 0.415586 2_3:+51975308 None:intergenic
AGCTCTTTCCACTCTTGCAT+TGG 0.422494 2_3:+51975443 None:intergenic
GAGGATTTCTTAGTAAAAGC+TGG 0.422923 2_3:-51975142 Msa0298030:CDS
TGCAAGAGTGGAAAGAGCTT+TGG 0.423243 2_3:-51975439 Msa0298030:CDS
ATGAATTCCTTGCCAGCATA+TGG 0.439595 2_3:-51975402 Msa0298030:CDS
TTGCAAGTTGTTATGGTTTG+AGG 0.440862 2_3:-51975042 Msa0298030:CDS
GAATGAATTACCAAGTTGTT+GGG 0.445076 2_3:+51975309 None:intergenic
TCTTGCATTGGAACTCATCA+AGG 0.446472 2_3:+51975455 None:intergenic
TTGCCATTCAAGAATCATAA+TGG 0.446766 2_3:-51975097 Msa0298030:CDS
TTGCCATTATGATTCTTGAA+TGG 0.449693 2_3:+51975094 None:intergenic
ACTCAATGTGTGTCTAGAAA+TGG 0.449816 2_3:-51974995 Msa0298030:CDS
TTATGGTTTGAGGCCTTCAA+TGG 0.451042 2_3:-51975032 Msa0298030:CDS
GAAAATCCCATTCCCATTGA+AGG 0.469209 2_3:+51975019 None:intergenic
AGAAAACTGTGGATGAAGTT+TGG 0.470434 2_3:-51975264 Msa0298030:CDS
TTGAGGCCTTCAATGGGAAT+GGG 0.472705 2_3:-51975025 Msa0298030:CDS
CTCAAGAAGCAACAAACACT+TGG 0.475735 2_3:-51975178 Msa0298030:CDS
TTATTTGTTTCTTTGAATTG+TGG 0.479374 2_3:+51975220 None:intergenic
CACACCGTTTCCCAACAACT+TGG 0.481051 2_3:-51975319 Msa0298030:CDS
GCTTCTGCTTGTTCTTGCAA+TGG 0.484450 2_3:+51975523 None:intergenic
TTTGAGGCCTTCAATGGGAA+TGG 0.489129 2_3:-51975026 Msa0298030:CDS
ATTACCAAGTTGTTGGGAAA+CGG 0.492082 2_3:+51975315 None:intergenic
TTGTTTCTTTGAATTGTGGT+TGG 0.500429 2_3:+51975224 None:intergenic
CTTCGCTCCACTACAACATC+AGG 0.510329 2_3:+51974845 None:intergenic
TAATAGGAAGAGGATAATTG+AGG 0.511054 2_3:-51974873 Msa0298030:CDS
GTCATTAGAACTCCATATGC+TGG 0.516405 2_3:+51975390 None:intergenic
GTGGGTGTAGTAATAGGAAG+AGG 0.522464 2_3:-51974883 Msa0298030:CDS
ACTTGGAGAAATGAGTTTGG+AGG 0.522848 2_3:-51975161 Msa0298030:CDS
AAGGAATTCATCCATGTTGA+GGG 0.524720 2_3:+51975414 None:intergenic
TAACAACTTGCAATATTCAA+TGG 0.527054 2_3:+51975052 None:intergenic
AATAGGAAGAGGATAATTGA+GGG 0.535141 2_3:-51974872 Msa0298030:CDS
ATCTAATTGTTGTAGAGCCA+TGG 0.537356 2_3:+51975555 None:intergenic
TATGGTTTGAGGCCTTCAAT+GGG 0.547796 2_3:-51975031 Msa0298030:CDS
TCGTTCTCGAGCAAGAAGAC+AGG 0.556810 2_3:-51974786 Msa0298030:intron
TTGTCACTGAATAACAACTT+AGG 0.558145 2_3:-51974953 Msa0298030:CDS
GAGCTTTGGTTCCCTCAACA+TGG 0.562617 2_3:-51975425 Msa0298030:CDS
CATTCAACAAAGGCTCAAAA+GGG 0.564482 2_3:-51974105 Msa0298030:CDS
GGCATATACATTAGAGCTAG+AGG 0.565644 2_3:-51974445 Msa0298030:CDS
CAAGGAATTCATCCATGTTG+AGG 0.566750 2_3:+51975413 None:intergenic
TAGAACTCCATATGCTGGCA+AGG 0.571014 2_3:+51975395 None:intergenic
TCTACAACAATTAGATCAAG+AGG 0.593387 2_3:-51975548 Msa0298030:CDS
TCCAATTTGGAAGAAAACTG+TGG 0.593419 2_3:-51975275 Msa0298030:CDS
CTGATGTTGTAGTGGAGCGA+AGG 0.596622 2_3:-51974844 Msa0298030:CDS
GCAACGAAAGCATTCAACAA+AGG 0.598492 2_3:-51974115 Msa0298030:CDS
GATGAGTTCCAATGCAAGAG+TGG 0.607955 2_3:-51975451 Msa0298030:CDS
GGGTCCTCCTGATGTTGTAG+TGG 0.611715 2_3:-51974852 Msa0298030:CDS
GAATAACAACTTAGGAGTGA+AGG 0.616648 2_3:-51974945 Msa0298030:CDS
CTTGCATTGGAACTCATCAA+GGG 0.629128 2_3:+51975456 None:intergenic
CGCTCCACTACAACATCAGG+AGG 0.642123 2_3:+51974848 None:intergenic
AGGCTGAAGCTGAGACCAAG+AGG 0.647700 2_3:-51974259 Msa0298030:CDS
TGAGACCAAGAGGAAACAAG+AGG 0.662863 2_3:-51974249 Msa0298030:intron
GAAGGCCTATAAGCACAACC+TGG 0.668432 2_3:-51974059 Msa0298030:CDS
CAAAGCTTGACTGAATCAAG+TGG 0.677316 2_3:-51974902 Msa0298030:CDS
AGGAGTGAAGGAATGTGCTG+TGG 0.702551 2_3:-51974933 Msa0298030:CDS
AAAGCTTGACTGAATCAAGT+GGG 0.724655 2_3:-51974901 Msa0298030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTATTTAAATATGAAAT+AGG - chr2_3:51975330-51975349 Msa0298030:CDS 10.0%
!! TTTCTATTTAAATATGAAAT+AGG - chr2_3:51975330-51975349 Msa0298030:CDS 10.0%
!!! ATTGCAAGATATTTTTTTAT+AGG + chr2_3:51975141-51975160 None:intergenic 15.0%
!!! AAGTTGATATTTATATAACA+AGG - chr2_3:51975411-51975430 Msa0298030:CDS 15.0%
!!! AGTTGATATTTATATAACAA+GGG - chr2_3:51975412-51975431 Msa0298030:CDS 15.0%
!!! ATTGCAAGATATTTTTTTAT+AGG + chr2_3:51975141-51975160 None:intergenic 15.0%
!!! AAGTTGATATTTATATAACA+AGG - chr2_3:51975411-51975430 Msa0298030:CDS 15.0%
!!! AGTTGATATTTATATAACAA+GGG - chr2_3:51975412-51975431 Msa0298030:CDS 15.0%
!!! TTATTTGTTTCTTTGAATTG+TGG + chr2_3:51974392-51974411 None:intergenic 20.0%
!!! AAAATGCAGGTTTTAAAAAA+AGG + chr2_3:51974995-51975014 None:intergenic 20.0%
!!! TTCTTGTTTTTTTTTCTTCA+TGG - chr2_3:51975280-51975299 Msa0298030:CDS 20.0%
!!! TTATTTGTTTCTTTGAATTG+TGG + chr2_3:51974392-51974411 None:intergenic 20.0%
!!! AAAATGCAGGTTTTAAAAAA+AGG + chr2_3:51974995-51975014 None:intergenic 20.0%
!!! TTCTTGTTTTTTTTTCTTCA+TGG - chr2_3:51975280-51975299 Msa0298030:CDS 20.0%
! TAACAACTTGCAATATTCAA+TGG + chr2_3:51974560-51974579 None:intergenic 25.0%
! TTGAATATTGCAAGTTGTTA+TGG - chr2_3:51974560-51974579 Msa0298030:intron 25.0%
! AATGTTGAAAAATCGTGAAT+CGG - chr2_3:51974796-51974815 Msa0298030:CDS 25.0%
!! CTTTGTTATAGTTCTATGTA+AGG - chr2_3:51974870-51974889 Msa0298030:CDS 25.0%
! CTTGATTTCGCAATAAATTA+TGG - chr2_3:51974931-51974950 Msa0298030:CDS 25.0%
! TAATGTGAATCATAAAATGC+AGG + chr2_3:51975008-51975027 None:intergenic 25.0%
! AAAAAAATATCTTGCAATGC+AGG - chr2_3:51975143-51975162 Msa0298030:CDS 25.0%
!! TGAAAATCTAAAACAAGTTC+TGG - chr2_3:51975215-51975234 Msa0298030:CDS 25.0%
! AAAAATTAAGAGCAATGAGA+AGG - chr2_3:51975532-51975551 Msa0298030:CDS 25.0%
! TAACAACTTGCAATATTCAA+TGG + chr2_3:51974560-51974579 None:intergenic 25.0%
! TTGAATATTGCAAGTTGTTA+TGG - chr2_3:51974560-51974579 Msa0298030:intron 25.0%
! AATGTTGAAAAATCGTGAAT+CGG - chr2_3:51974796-51974815 Msa0298030:CDS 25.0%
!! CTTTGTTATAGTTCTATGTA+AGG - chr2_3:51974870-51974889 Msa0298030:CDS 25.0%
! CTTGATTTCGCAATAAATTA+TGG - chr2_3:51974931-51974950 Msa0298030:CDS 25.0%
! TAATGTGAATCATAAAATGC+AGG + chr2_3:51975008-51975027 None:intergenic 25.0%
! AAAAAAATATCTTGCAATGC+AGG - chr2_3:51975143-51975162 Msa0298030:CDS 25.0%
!! TGAAAATCTAAAACAAGTTC+TGG - chr2_3:51975215-51975234 Msa0298030:CDS 25.0%
! AAAAATTAAGAGCAATGAGA+AGG - chr2_3:51975532-51975551 Msa0298030:CDS 25.0%
TCTACAACAATTAGATCAAG+AGG - chr2_3:51974061-51974080 Msa0298030:CDS 30.0%
!!! AGTATTGAGTTTTGTTTGCT+TGG + chr2_3:51974125-51974144 None:intergenic 30.0%
TGCTAAAAATGTTGCAACAA+CGG - chr2_3:51974265-51974284 Msa0298030:intron 30.0%
GAATGAATTACCAAGTTGTT+GGG + chr2_3:51974303-51974322 None:intergenic 30.0%
AGAATGAATTACCAAGTTGT+TGG + chr2_3:51974304-51974323 None:intergenic 30.0%
! TTGTTTCTTTGAATTGTGGT+TGG + chr2_3:51974388-51974407 None:intergenic 30.0%
TTGCCATTCAAGAATCATAA+TGG - chr2_3:51974512-51974531 Msa0298030:intron 30.0%
TTGCCATTATGATTCTTGAA+TGG + chr2_3:51974518-51974537 None:intergenic 30.0%
AATCATAATGGCAATGTTTC+AGG - chr2_3:51974524-51974543 Msa0298030:intron 30.0%
TGTTATTCAGTGACAACATT+TGG + chr2_3:51974652-51974671 None:intergenic 30.0%
TTGTCACTGAATAACAACTT+AGG - chr2_3:51974656-51974675 Msa0298030:intron 30.0%
TAATAGGAAGAGGATAATTG+AGG - chr2_3:51974736-51974755 Msa0298030:intron 30.0%
AATAGGAAGAGGATAATTGA+GGG - chr2_3:51974737-51974756 Msa0298030:intron 30.0%
CATAGAACTATAACAAAGAG+TGG + chr2_3:51974868-51974887 None:intergenic 30.0%
TATGATTCACATTAAGCTCA+AGG - chr2_3:51975014-51975033 Msa0298030:CDS 30.0%
TCTACAACAATTAGATCAAG+AGG - chr2_3:51974061-51974080 Msa0298030:CDS 30.0%
!!! AGTATTGAGTTTTGTTTGCT+TGG + chr2_3:51974125-51974144 None:intergenic 30.0%
TGCTAAAAATGTTGCAACAA+CGG - chr2_3:51974265-51974284 Msa0298030:intron 30.0%
GAATGAATTACCAAGTTGTT+GGG + chr2_3:51974303-51974322 None:intergenic 30.0%
AGAATGAATTACCAAGTTGT+TGG + chr2_3:51974304-51974323 None:intergenic 30.0%
! TTGTTTCTTTGAATTGTGGT+TGG + chr2_3:51974388-51974407 None:intergenic 30.0%
TTGCCATTCAAGAATCATAA+TGG - chr2_3:51974512-51974531 Msa0298030:intron 30.0%
TTGCCATTATGATTCTTGAA+TGG + chr2_3:51974518-51974537 None:intergenic 30.0%
AATCATAATGGCAATGTTTC+AGG - chr2_3:51974524-51974543 Msa0298030:intron 30.0%
TGTTATTCAGTGACAACATT+TGG + chr2_3:51974652-51974671 None:intergenic 30.0%
TTGTCACTGAATAACAACTT+AGG - chr2_3:51974656-51974675 Msa0298030:intron 30.0%
TAATAGGAAGAGGATAATTG+AGG - chr2_3:51974736-51974755 Msa0298030:intron 30.0%
AATAGGAAGAGGATAATTGA+GGG - chr2_3:51974737-51974756 Msa0298030:intron 30.0%
CATAGAACTATAACAAAGAG+TGG + chr2_3:51974868-51974887 None:intergenic 30.0%
TATGATTCACATTAAGCTCA+AGG - chr2_3:51975014-51975033 Msa0298030:CDS 30.0%
AAGGAATTCATCCATGTTGA+GGG + chr2_3:51974198-51974217 None:intergenic 35.0%
ATTACCAAGTTGTTGGGAAA+CGG + chr2_3:51974297-51974316 None:intergenic 35.0%
! TTTTCTTCCAAATTGGAGGA+GGG + chr2_3:51974331-51974350 None:intergenic 35.0%
! ACAGTTTTCTTCCAAATTGG+AGG + chr2_3:51974335-51974354 None:intergenic 35.0%
TCCAATTTGGAAGAAAACTG+TGG - chr2_3:51974334-51974353 Msa0298030:intron 35.0%
! TCCACAGTTTTCTTCCAAAT+TGG + chr2_3:51974338-51974357 None:intergenic 35.0%
AGAAAACTGTGGATGAAGTT+TGG - chr2_3:51974345-51974364 Msa0298030:intron 35.0%
AACACTTGGAGAAATGAGTT+TGG - chr2_3:51974445-51974464 Msa0298030:CDS 35.0%
GAGGATTTCTTAGTAAAAGC+TGG - chr2_3:51974467-51974486 Msa0298030:intron 35.0%
TTGCAAGTTGTTATGGTTTG+AGG - chr2_3:51974567-51974586 Msa0298030:intron 35.0%
ACTCAATGTGTGTCTAGAAA+TGG - chr2_3:51974614-51974633 Msa0298030:intron 35.0%
GAATAACAACTTAGGAGTGA+AGG - chr2_3:51974664-51974683 Msa0298030:intron 35.0%
AAAGCTTGACTGAATCAAGT+GGG - chr2_3:51974708-51974727 Msa0298030:intron 35.0%
AATCAAGTGGGTGTAGTAAT+AGG - chr2_3:51974720-51974739 Msa0298030:intron 35.0%
TGTTAAGGCAACCTAAATTG+TGG + chr2_3:51975060-51975079 None:intergenic 35.0%
ATGTTAGCAACTAGTTACCA+AGG + chr2_3:51975115-51975134 None:intergenic 35.0%
CATTCAACAAAGGCTCAAAA+GGG - chr2_3:51975504-51975523 Msa0298030:CDS 35.0%
AAGGAATTCATCCATGTTGA+GGG + chr2_3:51974198-51974217 None:intergenic 35.0%
ATTACCAAGTTGTTGGGAAA+CGG + chr2_3:51974297-51974316 None:intergenic 35.0%
! TTTTCTTCCAAATTGGAGGA+GGG + chr2_3:51974331-51974350 None:intergenic 35.0%
! ACAGTTTTCTTCCAAATTGG+AGG + chr2_3:51974335-51974354 None:intergenic 35.0%
TCCAATTTGGAAGAAAACTG+TGG - chr2_3:51974334-51974353 Msa0298030:intron 35.0%
! TCCACAGTTTTCTTCCAAAT+TGG + chr2_3:51974338-51974357 None:intergenic 35.0%
AGAAAACTGTGGATGAAGTT+TGG - chr2_3:51974345-51974364 Msa0298030:intron 35.0%
AACACTTGGAGAAATGAGTT+TGG - chr2_3:51974445-51974464 Msa0298030:CDS 35.0%
GAGGATTTCTTAGTAAAAGC+TGG - chr2_3:51974467-51974486 Msa0298030:intron 35.0%
TTGCAAGTTGTTATGGTTTG+AGG - chr2_3:51974567-51974586 Msa0298030:intron 35.0%
ACTCAATGTGTGTCTAGAAA+TGG - chr2_3:51974614-51974633 Msa0298030:intron 35.0%
GAATAACAACTTAGGAGTGA+AGG - chr2_3:51974664-51974683 Msa0298030:intron 35.0%
AAAGCTTGACTGAATCAAGT+GGG - chr2_3:51974708-51974727 Msa0298030:intron 35.0%
AATCAAGTGGGTGTAGTAAT+AGG - chr2_3:51974720-51974739 Msa0298030:intron 35.0%
TGTTAAGGCAACCTAAATTG+TGG + chr2_3:51975060-51975079 None:intergenic 35.0%
ATGTTAGCAACTAGTTACCA+AGG + chr2_3:51975115-51975134 None:intergenic 35.0%
CATTCAACAAAGGCTCAAAA+GGG - chr2_3:51975504-51975523 Msa0298030:CDS 35.0%
CTTGCATTGGAACTCATCAA+GGG + chr2_3:51974156-51974175 None:intergenic 40.0%
TCTTGCATTGGAACTCATCA+AGG + chr2_3:51974157-51974176 None:intergenic 40.0%
CAAGGAATTCATCCATGTTG+AGG + chr2_3:51974199-51974218 None:intergenic 40.0%
ATGAATTCCTTGCCAGCATA+TGG - chr2_3:51974207-51974226 Msa0298030:intron 40.0%
GTCATTAGAACTCCATATGC+TGG + chr2_3:51974222-51974241 None:intergenic 40.0%
! GTTTTCTTCCAAATTGGAGG+AGG + chr2_3:51974332-51974351 None:intergenic 40.0%
! TGAGTGTCTCGCTTCTTTTA+AGG + chr2_3:51974415-51974434 None:intergenic 40.0%
CTCAAGAAGCAACAAACACT+TGG - chr2_3:51974431-51974450 Msa0298030:CDS 40.0%
ACTTGGAGAAATGAGTTTGG+AGG - chr2_3:51974448-51974467 Msa0298030:intron 40.0%
! TTATGGTTTGAGGCCTTCAA+TGG - chr2_3:51974577-51974596 Msa0298030:intron 40.0%
! TATGGTTTGAGGCCTTCAAT+GGG - chr2_3:51974578-51974597 Msa0298030:intron 40.0%
GAAAATCCCATTCCCATTGA+AGG + chr2_3:51974593-51974612 None:intergenic 40.0%
CAAAGCTTGACTGAATCAAG+TGG - chr2_3:51974707-51974726 Msa0298030:intron 40.0%
AAATTATGGTCGAATGCGAC+AGG - chr2_3:51974945-51974964 Msa0298030:CDS 40.0%
TACGTCTGTGACCACAATTT+AGG - chr2_3:51975046-51975065 Msa0298030:CDS 40.0%
TTGTACCAGACATGATATGG+CGG + chr2_3:51975091-51975110 None:intergenic 40.0%
GGTTTGTACCAGACATGATA+TGG + chr2_3:51975094-51975113 None:intergenic 40.0%
ATCATGTCTGGTACAAACCT+TGG - chr2_3:51975095-51975114 Msa0298030:CDS 40.0%
GGCATATACATTAGAGCTAG+AGG - chr2_3:51975164-51975183 Msa0298030:CDS 40.0%
! ACTTACCTCTTGTTTCCTCT+TGG + chr2_3:51975368-51975387 None:intergenic 40.0%
!! GCAACGAAAGCATTCAACAA+AGG - chr2_3:51975494-51975513 Msa0298030:CDS 40.0%
GCATTCAACAAAGGCTCAAA+AGG - chr2_3:51975503-51975522 Msa0298030:CDS 40.0%
CTTGCATTGGAACTCATCAA+GGG + chr2_3:51974156-51974175 None:intergenic 40.0%
TCTTGCATTGGAACTCATCA+AGG + chr2_3:51974157-51974176 None:intergenic 40.0%
CAAGGAATTCATCCATGTTG+AGG + chr2_3:51974199-51974218 None:intergenic 40.0%
ATGAATTCCTTGCCAGCATA+TGG - chr2_3:51974207-51974226 Msa0298030:intron 40.0%
GTCATTAGAACTCCATATGC+TGG + chr2_3:51974222-51974241 None:intergenic 40.0%
! GTTTTCTTCCAAATTGGAGG+AGG + chr2_3:51974332-51974351 None:intergenic 40.0%
! TGAGTGTCTCGCTTCTTTTA+AGG + chr2_3:51974415-51974434 None:intergenic 40.0%
CTCAAGAAGCAACAAACACT+TGG - chr2_3:51974431-51974450 Msa0298030:CDS 40.0%
ACTTGGAGAAATGAGTTTGG+AGG - chr2_3:51974448-51974467 Msa0298030:intron 40.0%
! TTATGGTTTGAGGCCTTCAA+TGG - chr2_3:51974577-51974596 Msa0298030:intron 40.0%
! TATGGTTTGAGGCCTTCAAT+GGG - chr2_3:51974578-51974597 Msa0298030:intron 40.0%
GAAAATCCCATTCCCATTGA+AGG + chr2_3:51974593-51974612 None:intergenic 40.0%
CAAAGCTTGACTGAATCAAG+TGG - chr2_3:51974707-51974726 Msa0298030:intron 40.0%
AAATTATGGTCGAATGCGAC+AGG - chr2_3:51974945-51974964 Msa0298030:CDS 40.0%
TACGTCTGTGACCACAATTT+AGG - chr2_3:51975046-51975065 Msa0298030:CDS 40.0%
TTGTACCAGACATGATATGG+CGG + chr2_3:51975091-51975110 None:intergenic 40.0%
GGTTTGTACCAGACATGATA+TGG + chr2_3:51975094-51975113 None:intergenic 40.0%
ATCATGTCTGGTACAAACCT+TGG - chr2_3:51975095-51975114 Msa0298030:CDS 40.0%
GGCATATACATTAGAGCTAG+AGG - chr2_3:51975164-51975183 Msa0298030:CDS 40.0%
! ACTTACCTCTTGTTTCCTCT+TGG + chr2_3:51975368-51975387 None:intergenic 40.0%
!! GCAACGAAAGCATTCAACAA+AGG - chr2_3:51975494-51975513 Msa0298030:CDS 40.0%
GCATTCAACAAAGGCTCAAA+AGG - chr2_3:51975503-51975522 Msa0298030:CDS 40.0%
GCTTCTGCTTGTTCTTGCAA+TGG + chr2_3:51974089-51974108 None:intergenic 45.0%
GATGAGTTCCAATGCAAGAG+TGG - chr2_3:51974158-51974177 Msa0298030:intron 45.0%
AGCTCTTTCCACTCTTGCAT+TGG + chr2_3:51974169-51974188 None:intergenic 45.0%
TGCAAGAGTGGAAAGAGCTT+TGG - chr2_3:51974170-51974189 Msa0298030:intron 45.0%
TAGAACTCCATATGCTGGCA+AGG + chr2_3:51974217-51974236 None:intergenic 45.0%
! TTTGAGGCCTTCAATGGGAA+TGG - chr2_3:51974583-51974602 Msa0298030:intron 45.0%
TTGAGGCCTTCAATGGGAAT+GGG - chr2_3:51974584-51974603 Msa0298030:intron 45.0%
GTGGGTGTAGTAATAGGAAG+AGG - chr2_3:51974726-51974745 Msa0298030:intron 45.0%
ATGGCGGTCAAATGCTGTTA+AGG + chr2_3:51975075-51975094 None:intergenic 45.0%
TTTGACCGCCATATCATGTC+TGG - chr2_3:51975083-51975102 Msa0298030:CDS 45.0%
TGAGACCAAGAGGAAACAAG+AGG - chr2_3:51975360-51975379 Msa0298030:CDS 45.0%
GCTTCTGCTTGTTCTTGCAA+TGG + chr2_3:51974089-51974108 None:intergenic 45.0%
GATGAGTTCCAATGCAAGAG+TGG - chr2_3:51974158-51974177 Msa0298030:intron 45.0%
AGCTCTTTCCACTCTTGCAT+TGG + chr2_3:51974169-51974188 None:intergenic 45.0%
TGCAAGAGTGGAAAGAGCTT+TGG - chr2_3:51974170-51974189 Msa0298030:intron 45.0%
TAGAACTCCATATGCTGGCA+AGG + chr2_3:51974217-51974236 None:intergenic 45.0%
! TTTGAGGCCTTCAATGGGAA+TGG - chr2_3:51974583-51974602 Msa0298030:intron 45.0%
TTGAGGCCTTCAATGGGAAT+GGG - chr2_3:51974584-51974603 Msa0298030:intron 45.0%
GTGGGTGTAGTAATAGGAAG+AGG - chr2_3:51974726-51974745 Msa0298030:intron 45.0%
ATGGCGGTCAAATGCTGTTA+AGG + chr2_3:51975075-51975094 None:intergenic 45.0%
TTTGACCGCCATATCATGTC+TGG - chr2_3:51975083-51975102 Msa0298030:CDS 45.0%
TGAGACCAAGAGGAAACAAG+AGG - chr2_3:51975360-51975379 Msa0298030:CDS 45.0%
! GAGCTTTGGTTCCCTCAACA+TGG - chr2_3:51974184-51974203 Msa0298030:intron 50.0%
CACACCGTTTCCCAACAACT+TGG - chr2_3:51974290-51974309 Msa0298030:intron 50.0%
TCTCTGTCCCTCCTCCAATT+TGG - chr2_3:51974321-51974340 Msa0298030:intron 50.0%
AGGAGTGAAGGAATGTGCTG+TGG - chr2_3:51974676-51974695 Msa0298030:intron 50.0%
CTTCGCTCCACTACAACATC+AGG + chr2_3:51974767-51974786 None:intergenic 50.0%
! CTGATGTTGTAGTGGAGCGA+AGG - chr2_3:51974765-51974784 Msa0298030:intron 50.0%
TCGTTCTCGAGCAAGAAGAC+AGG - chr2_3:51974823-51974842 Msa0298030:CDS 50.0%
AGTTGCAGTTACCTTCGCTG+TGG - chr2_3:51974898-51974917 Msa0298030:CDS 50.0%
GAATTGTGAAGCCACAGCGA+AGG + chr2_3:51974912-51974931 None:intergenic 50.0%
GAAGGCCTATAAGCACAACC+TGG - chr2_3:51975550-51975569 Msa0298030:CDS 50.0%
! GAGCTTTGGTTCCCTCAACA+TGG - chr2_3:51974184-51974203 Msa0298030:intron 50.0%
CACACCGTTTCCCAACAACT+TGG - chr2_3:51974290-51974309 Msa0298030:intron 50.0%
TCTCTGTCCCTCCTCCAATT+TGG - chr2_3:51974321-51974340 Msa0298030:intron 50.0%
AGGAGTGAAGGAATGTGCTG+TGG - chr2_3:51974676-51974695 Msa0298030:intron 50.0%
CTTCGCTCCACTACAACATC+AGG + chr2_3:51974767-51974786 None:intergenic 50.0%
! CTGATGTTGTAGTGGAGCGA+AGG - chr2_3:51974765-51974784 Msa0298030:intron 50.0%
TCGTTCTCGAGCAAGAAGAC+AGG - chr2_3:51974823-51974842 Msa0298030:CDS 50.0%
AGTTGCAGTTACCTTCGCTG+TGG - chr2_3:51974898-51974917 Msa0298030:CDS 50.0%
GAATTGTGAAGCCACAGCGA+AGG + chr2_3:51974912-51974931 None:intergenic 50.0%
GAAGGCCTATAAGCACAACC+TGG - chr2_3:51975550-51975569 Msa0298030:CDS 50.0%
GGGTCCTCCTGATGTTGTAG+TGG - chr2_3:51974757-51974776 Msa0298030:intron 55.0%
CGCTCCACTACAACATCAGG+AGG + chr2_3:51974764-51974783 None:intergenic 55.0%
GACAGGTTCAGCCTCGATCA+CGG - chr2_3:51974962-51974981 Msa0298030:CDS 55.0%
AAGGTCTGTGACCGTGATCG+AGG + chr2_3:51974976-51974995 None:intergenic 55.0%
AGGCTGAAGCTGAGACCAAG+AGG - chr2_3:51975350-51975369 Msa0298030:CDS 55.0%
GGGTCCTCCTGATGTTGTAG+TGG - chr2_3:51974757-51974776 Msa0298030:intron 55.0%
CGCTCCACTACAACATCAGG+AGG + chr2_3:51974764-51974783 None:intergenic 55.0%
GACAGGTTCAGCCTCGATCA+CGG - chr2_3:51974962-51974981 Msa0298030:CDS 55.0%
AAGGTCTGTGACCGTGATCG+AGG + chr2_3:51974976-51974995 None:intergenic 55.0%
AGGCTGAAGCTGAGACCAAG+AGG - chr2_3:51975350-51975369 Msa0298030:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 51974056 51975575 51974056 ID=Msa0298030;Name=Msa0298030
chr2_3 mRNA 51974056 51975575 51974056 ID=Msa0298030-mRNA-1;Parent=Msa0298030;Name=Msa0298030-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|4|0|325
chr2_3 exon 51974787 51975575 51974787 ID=Msa0298030-mRNA-1:exon:16555;Parent=Msa0298030-mRNA-1
chr2_3 exon 51974395 51974466 51974395 ID=Msa0298030-mRNA-1:exon:16554;Parent=Msa0298030-mRNA-1
chr2_3 exon 51974250 51974279 51974250 ID=Msa0298030-mRNA-1:exon:16553;Parent=Msa0298030-mRNA-1
chr2_3 exon 51974056 51974142 51974056 ID=Msa0298030-mRNA-1:exon:16552;Parent=Msa0298030-mRNA-1
chr2_3 CDS 51974787 51975575 51974787 ID=Msa0298030-mRNA-1:cds;Parent=Msa0298030-mRNA-1
chr2_3 CDS 51974395 51974466 51974395 ID=Msa0298030-mRNA-1:cds;Parent=Msa0298030-mRNA-1
chr2_3 CDS 51974250 51974279 51974250 ID=Msa0298030-mRNA-1:cds;Parent=Msa0298030-mRNA-1
chr2_3 CDS 51974056 51974142 51974056 ID=Msa0298030-mRNA-1:cds;Parent=Msa0298030-mRNA-1
Gene Sequence

>Msa0298030

ATGGCTCTACAACAATTAGATCAAGAGGTTCCATTGCAAGAACAAGCAGAAGCTACATTTTCTCAACCAAGCAAACAAAACTCAATACTCTCACTCACCCTTGATGAGTTCCAATGCAAGAGTGGAAAGAGCTTTGGTTCCCTCAACATGGATGAATTCCTTGCCAGCATATGGAGTTCTAATGACGAAGCTACAACTCAAACTCAAAATGCTAAAAATGTTGCAACAACGGAACACACCGTTTCCCAACAACTTGGTAATTCATTCTCTGTCCCTCCTCCAATTTGGAAGAAAACTGTGGATGAAGTTTGGTCTGAGATTCATAAAAACCAACCACAATTCAAAGAAACAAATAACCTTAAAAGAAGCGAGACACTCAAGAAGCAACAAACACTTGGAGAAATGAGTTTGGAGGATTTCTTAGTAAAAGCTGGAGTAGTACAACAATCATCAGCATTGCCATTCAAGAATCATAATGGCAATGTTTCAGGTAATATGAGACCATTGAATATTGCAAGTTGTTATGGTTTGAGGCCTTCAATGGGAATGGGATTTTCTACTCAATGTGTGTCTAGAAATGGTCTTGCAACATACCAAATGTTGTCACTGAATAACAACTTAGGAGTGAAGGAATGTGCTGTGGAGAAATGTCAAAGCTTGACTGAATCAAGTGGGTGTAGTAATAGGAAGAGGATAATTGAGGGTCCTCCTGATGTTGTAGTGGAGCGAAGGCAACGTAGAATGTTGAAAAATCGTGAATCGGCTGCTCGTTCTCGAGCAAGAAGACAGGCATATACATTAGAGCTAGAGGCAGAGCTGAATCTGCTAAAAGAAGAGAATGAAAATCTAAAACAAGTTCTGGCTGAAGCTGAGACCAAGAGGAAACAAGAGCTTTTGCAACGAAAGCATTCAACAAAGGCTCAAAAGGGCGCACAAAAATTAAGAGCAATGAGAAGGCCTATAAGCACAACCTGGTGA

Protein sequence

>Msa0298030

MALQQLDQEVPLQEQAEATFSQPSKQNSILSLTLDEFQCKSGKSFGSLNMDEFLASIWSSNDEATTQTQNAKNVATTEHTVSQQLGNSFSVPPPIWKKTVDEVWSEIHKNQPQFKETNNLKRSETLKKQQTLGEMSLEDFLVKAGVVQQSSALPFKNHNGNVSGNMRPLNIASCYGLRPSMGMGFSTQCVSRNGLATYQMLSLNNNLGVKECAVEKCQSLTESSGCSNRKRIIEGPPDVVVERRQRRMLKNRESAARSRARRQAYTLELEAELNLLKEENENLKQVLAEAETKRKQELLQRKHSTKAQKGAQKLRAMRRPISTTW*