Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0298030 | XP_003596807.1 | 93.231 | 325 | 21 | 1 | 1 | 325 | 1 | 324 | 0.0 | 598 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0298030 | sp|Q8RYD6|AI5L1_ARATH | 43.544 | 333 | 157 | 9 | 7 | 325 | 16 | 331 | 2.43e-65 | 212 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0298030 | G7ITR9 | 93.231 | 325 | 21 | 1 | 1 | 325 | 1 | 324 | 0.0 | 598 |
Gene ID | Type | Classification |
---|---|---|
Msa0298030 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0219040 | Msa0298030 | 0.891419 | 4.040177e-74 | -8.615850e-47 |
Msa0258580 | Msa0298030 | 0.844741 | 6.266529e-59 | -8.615850e-47 |
Msa0298030 | Msa0323110 | 0.835649 | 1.483704e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0298030 | MtrunA17_Chr2g0321381 | 92.708 | 288 | 20 | 1 | 1 | 288 | 1 | 287 | 0.0 | 525 |
Msa0298030 | MtrunA17_Chr2g0321411 | 66.871 | 326 | 69 | 6 | 1 | 325 | 1 | 288 | 5.19e-147 | 415 |
Msa0298030 | MtrunA17_Chr8g0355121 | 37.676 | 284 | 130 | 11 | 25 | 285 | 26 | 285 | 1.23e-36 | 134 |
Msa0298030 | MtrunA17_Chr3g0080341 | 34.915 | 295 | 146 | 13 | 20 | 285 | 17 | 294 | 1.79e-35 | 130 |
Msa0298030 | MtrunA17_Chr7g0254991 | 34.314 | 306 | 150 | 11 | 12 | 286 | 8 | 293 | 2.62e-32 | 122 |
Msa0298030 | MtrunA17_Chr7g0266211 | 47.761 | 134 | 57 | 4 | 29 | 149 | 45 | 178 | 1.61e-29 | 117 |
Msa0298030 | MtrunA17_Chr7g0266211 | 46.154 | 169 | 59 | 4 | 168 | 319 | 272 | 425 | 7.48e-25 | 103 |
Msa0298030 | MtrunA17_Chr6g0460301 | 36.271 | 295 | 137 | 12 | 24 | 285 | 17 | 293 | 3.29e-25 | 103 |
Msa0298030 | MtrunA17_Chr3g0133971 | 42.748 | 131 | 60 | 6 | 24 | 151 | 28 | 146 | 6.90e-20 | 89.7 |
Msa0298030 | MtrunA17_Chr3g0133971 | 47.525 | 101 | 41 | 3 | 229 | 325 | 339 | 431 | 6.05e-16 | 78.2 |
Msa0298030 | MtrunA17_Chr4g0044771 | 51.163 | 86 | 32 | 2 | 241 | 325 | 300 | 376 | 1.97e-15 | 76.3 |
Msa0298030 | MtrunA17_Chr4g0044771 | 34.559 | 136 | 69 | 4 | 24 | 151 | 19 | 142 | 7.80e-15 | 74.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0298030 | AT3G44460.1 | 43.544 | 333 | 157 | 9 | 7 | 325 | 16 | 331 | 2.47e-66 | 212 |
Msa0298030 | AT2G36270.1 | 35.084 | 419 | 140 | 12 | 20 | 320 | 34 | 438 | 6.26e-56 | 188 |
Msa0298030 | AT2G36270.2 | 35.084 | 419 | 140 | 12 | 20 | 320 | 34 | 438 | 6.26e-56 | 188 |
Msa0298030 | AT2G36270.3 | 35.115 | 393 | 127 | 10 | 20 | 298 | 34 | 412 | 5.43e-55 | 186 |
Msa0298030 | AT3G56850.1 | 39.427 | 279 | 124 | 12 | 25 | 285 | 18 | 269 | 3.02e-40 | 143 |
Msa0298030 | AT2G41070.5 | 34.211 | 266 | 125 | 7 | 24 | 286 | 17 | 235 | 9.38e-35 | 127 |
Msa0298030 | AT2G41070.3 | 34.211 | 266 | 125 | 7 | 24 | 286 | 17 | 235 | 1.62e-34 | 127 |
Msa0298030 | AT2G41070.1 | 34.211 | 266 | 125 | 7 | 24 | 286 | 17 | 235 | 1.62e-34 | 127 |
Msa0298030 | AT2G41070.2 | 34.211 | 266 | 125 | 7 | 24 | 286 | 17 | 235 | 1.62e-34 | 127 |
Msa0298030 | AT2G41070.4 | 34.211 | 266 | 125 | 7 | 24 | 286 | 26 | 244 | 1.89e-34 | 127 |
Msa0298030 | AT1G45249.1 | 30.500 | 400 | 175 | 14 | 24 | 325 | 22 | 416 | 1.18e-30 | 120 |
Msa0298030 | AT1G45249.3 | 30.170 | 411 | 173 | 14 | 24 | 325 | 22 | 427 | 1.79e-30 | 120 |
Msa0298030 | AT1G49720.2 | 39.568 | 139 | 69 | 5 | 21 | 149 | 20 | 153 | 7.39e-20 | 89.7 |
Msa0298030 | AT1G49720.2 | 61.667 | 60 | 23 | 0 | 240 | 299 | 310 | 369 | 3.41e-14 | 73.2 |
Msa0298030 | AT1G49720.1 | 39.568 | 139 | 69 | 5 | 21 | 149 | 20 | 153 | 8.59e-20 | 89.7 |
Msa0298030 | AT1G49720.1 | 51.163 | 86 | 39 | 1 | 240 | 325 | 310 | 392 | 4.93e-15 | 75.5 |
Msa0298030 | AT1G49720.3 | 39.568 | 139 | 69 | 5 | 21 | 149 | 20 | 153 | 8.59e-20 | 89.7 |
Msa0298030 | AT1G49720.3 | 51.163 | 86 | 39 | 1 | 240 | 325 | 310 | 392 | 4.93e-15 | 75.5 |
Msa0298030 | AT1G45249.7 | 35.294 | 153 | 88 | 2 | 24 | 165 | 37 | 189 | 1.04e-19 | 89.7 |
Msa0298030 | AT1G45249.7 | 50.485 | 103 | 42 | 4 | 224 | 325 | 337 | 431 | 2.53e-15 | 76.6 |
Msa0298030 | AT1G45249.6 | 35.294 | 153 | 88 | 2 | 24 | 165 | 37 | 189 | 1.04e-19 | 89.7 |
Msa0298030 | AT1G45249.6 | 50.485 | 103 | 42 | 4 | 224 | 325 | 337 | 431 | 2.53e-15 | 76.6 |
Msa0298030 | AT1G45249.10 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 2.46e-19 | 88.2 |
Msa0298030 | AT1G45249.5 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 2.46e-19 | 88.2 |
Msa0298030 | AT1G45249.4 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 3.28e-19 | 88.2 |
Msa0298030 | AT1G45249.8 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 3.28e-19 | 88.2 |
Msa0298030 | AT1G45249.2 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 3.28e-19 | 88.2 |
Msa0298030 | AT1G45249.9 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 3.28e-19 | 88.2 |
Msa0298030 | AT4G34000.1 | 31.532 | 222 | 96 | 6 | 24 | 201 | 28 | 237 | 4.20e-18 | 85.1 |
Msa0298030 | AT4G34000.1 | 50.000 | 86 | 41 | 1 | 240 | 325 | 371 | 454 | 1.00e-15 | 78.2 |
Msa0298030 | AT4G34000.4 | 31.532 | 222 | 96 | 6 | 24 | 201 | 28 | 237 | 4.20e-18 | 85.1 |
Msa0298030 | AT4G34000.4 | 50.000 | 86 | 41 | 1 | 240 | 325 | 371 | 454 | 1.00e-15 | 78.2 |
Msa0298030 | AT4G34000.2 | 31.532 | 222 | 96 | 6 | 24 | 201 | 28 | 237 | 4.20e-18 | 85.1 |
Msa0298030 | AT4G34000.2 | 50.000 | 86 | 41 | 1 | 240 | 325 | 371 | 454 | 1.00e-15 | 78.2 |
Msa0298030 | AT4G34000.3 | 31.532 | 222 | 96 | 7 | 24 | 201 | 28 | 237 | 4.48e-18 | 85.1 |
Msa0298030 | AT4G34000.3 | 73.913 | 46 | 12 | 0 | 240 | 285 | 371 | 416 | 4.88e-14 | 72.8 |
Msa0298030 | AT5G44080.1 | 30.435 | 230 | 124 | 6 | 98 | 325 | 120 | 315 | 7.93e-18 | 83.2 |
Msa0298030 | AT3G19290.1 | 42.029 | 138 | 64 | 4 | 194 | 325 | 304 | 431 | 5.67e-17 | 81.6 |
Msa0298030 | AT3G19290.1 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.65e-16 | 80.1 |
Msa0298030 | AT3G19290.5 | 42.029 | 138 | 64 | 4 | 194 | 325 | 304 | 431 | 5.67e-17 | 81.6 |
Msa0298030 | AT3G19290.5 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.65e-16 | 80.1 |
Msa0298030 | AT3G19290.3 | 42.029 | 138 | 65 | 4 | 194 | 325 | 304 | 432 | 7.83e-17 | 81.3 |
Msa0298030 | AT3G19290.3 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.69e-16 | 80.1 |
Msa0298030 | AT3G19290.4 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.34e-16 | 80.5 |
Msa0298030 | AT3G19290.4 | 45.536 | 112 | 49 | 2 | 194 | 299 | 304 | 409 | 9.92e-16 | 77.8 |
Msa0298030 | AT3G19290.2 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.81e-16 | 80.1 |
Msa0298030 | AT2G17770.2 | 31.100 | 209 | 117 | 8 | 100 | 301 | 1 | 189 | 5.20e-13 | 67.4 |
Msa0298030 | AT1G03970.1 | 30.049 | 203 | 101 | 5 | 98 | 300 | 85 | 246 | 1.28e-12 | 67.4 |
Msa0298030 | AT5G42910.1 | 38.095 | 126 | 55 | 5 | 24 | 146 | 21 | 126 | 1.32e-12 | 68.2 |
Find 65 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTCACCAGGTTGTGCTTAT+AGG | 0.185713 | 2_3:+51974054 | None:intergenic |
AATCATAATGGCAATGTTTC+AGG | 0.221412 | 2_3:-51975085 | Msa0298030:CDS |
TCTCTGTCCCTCCTCCAATT+TGG | 0.252757 | 2_3:-51975288 | Msa0298030:CDS |
TTGAATATTGCAAGTTGTTA+TGG | 0.294474 | 2_3:-51975049 | Msa0298030:CDS |
AATCAAGTGGGTGTAGTAAT+AGG | 0.330386 | 2_3:-51974889 | Msa0298030:CDS |
TGAAAATCTAAAACAAGTTC+TGG | 0.355048 | 2_3:-51974394 | Msa0298030:intron |
GTCATTGAGGCTTGTTCACC+AGG | 0.361408 | 2_3:+51974041 | None:intergenic |
AACACTTGGAGAAATGAGTT+TGG | 0.378783 | 2_3:-51975164 | Msa0298030:CDS |
GCATTCAACAAAGGCTCAAA+AGG | 0.385055 | 2_3:-51974106 | Msa0298030:CDS |
TGTTATTCAGTGACAACATT+TGG | 0.394761 | 2_3:+51974960 | None:intergenic |
ACTTACCTCTTGTTTCCTCT+TGG | 0.402763 | 2_3:+51974244 | None:intergenic |
AGAATGAATTACCAAGTTGT+TGG | 0.415586 | 2_3:+51975308 | None:intergenic |
AGCTCTTTCCACTCTTGCAT+TGG | 0.422494 | 2_3:+51975443 | None:intergenic |
GAGGATTTCTTAGTAAAAGC+TGG | 0.422923 | 2_3:-51975142 | Msa0298030:CDS |
TGCAAGAGTGGAAAGAGCTT+TGG | 0.423243 | 2_3:-51975439 | Msa0298030:CDS |
ATGAATTCCTTGCCAGCATA+TGG | 0.439595 | 2_3:-51975402 | Msa0298030:CDS |
TTGCAAGTTGTTATGGTTTG+AGG | 0.440862 | 2_3:-51975042 | Msa0298030:CDS |
GAATGAATTACCAAGTTGTT+GGG | 0.445076 | 2_3:+51975309 | None:intergenic |
TCTTGCATTGGAACTCATCA+AGG | 0.446472 | 2_3:+51975455 | None:intergenic |
TTGCCATTCAAGAATCATAA+TGG | 0.446766 | 2_3:-51975097 | Msa0298030:CDS |
TTGCCATTATGATTCTTGAA+TGG | 0.449693 | 2_3:+51975094 | None:intergenic |
ACTCAATGTGTGTCTAGAAA+TGG | 0.449816 | 2_3:-51974995 | Msa0298030:CDS |
TTATGGTTTGAGGCCTTCAA+TGG | 0.451042 | 2_3:-51975032 | Msa0298030:CDS |
GAAAATCCCATTCCCATTGA+AGG | 0.469209 | 2_3:+51975019 | None:intergenic |
AGAAAACTGTGGATGAAGTT+TGG | 0.470434 | 2_3:-51975264 | Msa0298030:CDS |
TTGAGGCCTTCAATGGGAAT+GGG | 0.472705 | 2_3:-51975025 | Msa0298030:CDS |
CTCAAGAAGCAACAAACACT+TGG | 0.475735 | 2_3:-51975178 | Msa0298030:CDS |
TTATTTGTTTCTTTGAATTG+TGG | 0.479374 | 2_3:+51975220 | None:intergenic |
CACACCGTTTCCCAACAACT+TGG | 0.481051 | 2_3:-51975319 | Msa0298030:CDS |
GCTTCTGCTTGTTCTTGCAA+TGG | 0.484450 | 2_3:+51975523 | None:intergenic |
TTTGAGGCCTTCAATGGGAA+TGG | 0.489129 | 2_3:-51975026 | Msa0298030:CDS |
ATTACCAAGTTGTTGGGAAA+CGG | 0.492082 | 2_3:+51975315 | None:intergenic |
TTGTTTCTTTGAATTGTGGT+TGG | 0.500429 | 2_3:+51975224 | None:intergenic |
CTTCGCTCCACTACAACATC+AGG | 0.510329 | 2_3:+51974845 | None:intergenic |
TAATAGGAAGAGGATAATTG+AGG | 0.511054 | 2_3:-51974873 | Msa0298030:CDS |
GTCATTAGAACTCCATATGC+TGG | 0.516405 | 2_3:+51975390 | None:intergenic |
GTGGGTGTAGTAATAGGAAG+AGG | 0.522464 | 2_3:-51974883 | Msa0298030:CDS |
ACTTGGAGAAATGAGTTTGG+AGG | 0.522848 | 2_3:-51975161 | Msa0298030:CDS |
AAGGAATTCATCCATGTTGA+GGG | 0.524720 | 2_3:+51975414 | None:intergenic |
TAACAACTTGCAATATTCAA+TGG | 0.527054 | 2_3:+51975052 | None:intergenic |
AATAGGAAGAGGATAATTGA+GGG | 0.535141 | 2_3:-51974872 | Msa0298030:CDS |
ATCTAATTGTTGTAGAGCCA+TGG | 0.537356 | 2_3:+51975555 | None:intergenic |
TATGGTTTGAGGCCTTCAAT+GGG | 0.547796 | 2_3:-51975031 | Msa0298030:CDS |
TCGTTCTCGAGCAAGAAGAC+AGG | 0.556810 | 2_3:-51974786 | Msa0298030:intron |
TTGTCACTGAATAACAACTT+AGG | 0.558145 | 2_3:-51974953 | Msa0298030:CDS |
GAGCTTTGGTTCCCTCAACA+TGG | 0.562617 | 2_3:-51975425 | Msa0298030:CDS |
CATTCAACAAAGGCTCAAAA+GGG | 0.564482 | 2_3:-51974105 | Msa0298030:CDS |
GGCATATACATTAGAGCTAG+AGG | 0.565644 | 2_3:-51974445 | Msa0298030:CDS |
CAAGGAATTCATCCATGTTG+AGG | 0.566750 | 2_3:+51975413 | None:intergenic |
TAGAACTCCATATGCTGGCA+AGG | 0.571014 | 2_3:+51975395 | None:intergenic |
TCTACAACAATTAGATCAAG+AGG | 0.593387 | 2_3:-51975548 | Msa0298030:CDS |
TCCAATTTGGAAGAAAACTG+TGG | 0.593419 | 2_3:-51975275 | Msa0298030:CDS |
CTGATGTTGTAGTGGAGCGA+AGG | 0.596622 | 2_3:-51974844 | Msa0298030:CDS |
GCAACGAAAGCATTCAACAA+AGG | 0.598492 | 2_3:-51974115 | Msa0298030:CDS |
GATGAGTTCCAATGCAAGAG+TGG | 0.607955 | 2_3:-51975451 | Msa0298030:CDS |
GGGTCCTCCTGATGTTGTAG+TGG | 0.611715 | 2_3:-51974852 | Msa0298030:CDS |
GAATAACAACTTAGGAGTGA+AGG | 0.616648 | 2_3:-51974945 | Msa0298030:CDS |
CTTGCATTGGAACTCATCAA+GGG | 0.629128 | 2_3:+51975456 | None:intergenic |
CGCTCCACTACAACATCAGG+AGG | 0.642123 | 2_3:+51974848 | None:intergenic |
AGGCTGAAGCTGAGACCAAG+AGG | 0.647700 | 2_3:-51974259 | Msa0298030:CDS |
TGAGACCAAGAGGAAACAAG+AGG | 0.662863 | 2_3:-51974249 | Msa0298030:intron |
GAAGGCCTATAAGCACAACC+TGG | 0.668432 | 2_3:-51974059 | Msa0298030:CDS |
CAAAGCTTGACTGAATCAAG+TGG | 0.677316 | 2_3:-51974902 | Msa0298030:CDS |
AGGAGTGAAGGAATGTGCTG+TGG | 0.702551 | 2_3:-51974933 | Msa0298030:CDS |
AAAGCTTGACTGAATCAAGT+GGG | 0.724655 | 2_3:-51974901 | Msa0298030:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTCTATTTAAATATGAAAT+AGG | - | chr2_3:51975330-51975349 | Msa0298030:CDS | 10.0% |
!! | TTTCTATTTAAATATGAAAT+AGG | - | chr2_3:51975330-51975349 | Msa0298030:CDS | 10.0% |
!!! | ATTGCAAGATATTTTTTTAT+AGG | + | chr2_3:51975141-51975160 | None:intergenic | 15.0% |
!!! | AAGTTGATATTTATATAACA+AGG | - | chr2_3:51975411-51975430 | Msa0298030:CDS | 15.0% |
!!! | AGTTGATATTTATATAACAA+GGG | - | chr2_3:51975412-51975431 | Msa0298030:CDS | 15.0% |
!!! | ATTGCAAGATATTTTTTTAT+AGG | + | chr2_3:51975141-51975160 | None:intergenic | 15.0% |
!!! | AAGTTGATATTTATATAACA+AGG | - | chr2_3:51975411-51975430 | Msa0298030:CDS | 15.0% |
!!! | AGTTGATATTTATATAACAA+GGG | - | chr2_3:51975412-51975431 | Msa0298030:CDS | 15.0% |
!!! | TTATTTGTTTCTTTGAATTG+TGG | + | chr2_3:51974392-51974411 | None:intergenic | 20.0% |
!!! | AAAATGCAGGTTTTAAAAAA+AGG | + | chr2_3:51974995-51975014 | None:intergenic | 20.0% |
!!! | TTCTTGTTTTTTTTTCTTCA+TGG | - | chr2_3:51975280-51975299 | Msa0298030:CDS | 20.0% |
!!! | TTATTTGTTTCTTTGAATTG+TGG | + | chr2_3:51974392-51974411 | None:intergenic | 20.0% |
!!! | AAAATGCAGGTTTTAAAAAA+AGG | + | chr2_3:51974995-51975014 | None:intergenic | 20.0% |
!!! | TTCTTGTTTTTTTTTCTTCA+TGG | - | chr2_3:51975280-51975299 | Msa0298030:CDS | 20.0% |
! | TAACAACTTGCAATATTCAA+TGG | + | chr2_3:51974560-51974579 | None:intergenic | 25.0% |
! | TTGAATATTGCAAGTTGTTA+TGG | - | chr2_3:51974560-51974579 | Msa0298030:intron | 25.0% |
! | AATGTTGAAAAATCGTGAAT+CGG | - | chr2_3:51974796-51974815 | Msa0298030:CDS | 25.0% |
!! | CTTTGTTATAGTTCTATGTA+AGG | - | chr2_3:51974870-51974889 | Msa0298030:CDS | 25.0% |
! | CTTGATTTCGCAATAAATTA+TGG | - | chr2_3:51974931-51974950 | Msa0298030:CDS | 25.0% |
! | TAATGTGAATCATAAAATGC+AGG | + | chr2_3:51975008-51975027 | None:intergenic | 25.0% |
! | AAAAAAATATCTTGCAATGC+AGG | - | chr2_3:51975143-51975162 | Msa0298030:CDS | 25.0% |
!! | TGAAAATCTAAAACAAGTTC+TGG | - | chr2_3:51975215-51975234 | Msa0298030:CDS | 25.0% |
! | AAAAATTAAGAGCAATGAGA+AGG | - | chr2_3:51975532-51975551 | Msa0298030:CDS | 25.0% |
! | TAACAACTTGCAATATTCAA+TGG | + | chr2_3:51974560-51974579 | None:intergenic | 25.0% |
! | TTGAATATTGCAAGTTGTTA+TGG | - | chr2_3:51974560-51974579 | Msa0298030:intron | 25.0% |
! | AATGTTGAAAAATCGTGAAT+CGG | - | chr2_3:51974796-51974815 | Msa0298030:CDS | 25.0% |
!! | CTTTGTTATAGTTCTATGTA+AGG | - | chr2_3:51974870-51974889 | Msa0298030:CDS | 25.0% |
! | CTTGATTTCGCAATAAATTA+TGG | - | chr2_3:51974931-51974950 | Msa0298030:CDS | 25.0% |
! | TAATGTGAATCATAAAATGC+AGG | + | chr2_3:51975008-51975027 | None:intergenic | 25.0% |
! | AAAAAAATATCTTGCAATGC+AGG | - | chr2_3:51975143-51975162 | Msa0298030:CDS | 25.0% |
!! | TGAAAATCTAAAACAAGTTC+TGG | - | chr2_3:51975215-51975234 | Msa0298030:CDS | 25.0% |
! | AAAAATTAAGAGCAATGAGA+AGG | - | chr2_3:51975532-51975551 | Msa0298030:CDS | 25.0% |
TCTACAACAATTAGATCAAG+AGG | - | chr2_3:51974061-51974080 | Msa0298030:CDS | 30.0% | |
!!! | AGTATTGAGTTTTGTTTGCT+TGG | + | chr2_3:51974125-51974144 | None:intergenic | 30.0% |
TGCTAAAAATGTTGCAACAA+CGG | - | chr2_3:51974265-51974284 | Msa0298030:intron | 30.0% | |
GAATGAATTACCAAGTTGTT+GGG | + | chr2_3:51974303-51974322 | None:intergenic | 30.0% | |
AGAATGAATTACCAAGTTGT+TGG | + | chr2_3:51974304-51974323 | None:intergenic | 30.0% | |
! | TTGTTTCTTTGAATTGTGGT+TGG | + | chr2_3:51974388-51974407 | None:intergenic | 30.0% |
TTGCCATTCAAGAATCATAA+TGG | - | chr2_3:51974512-51974531 | Msa0298030:intron | 30.0% | |
TTGCCATTATGATTCTTGAA+TGG | + | chr2_3:51974518-51974537 | None:intergenic | 30.0% | |
AATCATAATGGCAATGTTTC+AGG | - | chr2_3:51974524-51974543 | Msa0298030:intron | 30.0% | |
TGTTATTCAGTGACAACATT+TGG | + | chr2_3:51974652-51974671 | None:intergenic | 30.0% | |
TTGTCACTGAATAACAACTT+AGG | - | chr2_3:51974656-51974675 | Msa0298030:intron | 30.0% | |
TAATAGGAAGAGGATAATTG+AGG | - | chr2_3:51974736-51974755 | Msa0298030:intron | 30.0% | |
AATAGGAAGAGGATAATTGA+GGG | - | chr2_3:51974737-51974756 | Msa0298030:intron | 30.0% | |
CATAGAACTATAACAAAGAG+TGG | + | chr2_3:51974868-51974887 | None:intergenic | 30.0% | |
TATGATTCACATTAAGCTCA+AGG | - | chr2_3:51975014-51975033 | Msa0298030:CDS | 30.0% | |
TCTACAACAATTAGATCAAG+AGG | - | chr2_3:51974061-51974080 | Msa0298030:CDS | 30.0% | |
!!! | AGTATTGAGTTTTGTTTGCT+TGG | + | chr2_3:51974125-51974144 | None:intergenic | 30.0% |
TGCTAAAAATGTTGCAACAA+CGG | - | chr2_3:51974265-51974284 | Msa0298030:intron | 30.0% | |
GAATGAATTACCAAGTTGTT+GGG | + | chr2_3:51974303-51974322 | None:intergenic | 30.0% | |
AGAATGAATTACCAAGTTGT+TGG | + | chr2_3:51974304-51974323 | None:intergenic | 30.0% | |
! | TTGTTTCTTTGAATTGTGGT+TGG | + | chr2_3:51974388-51974407 | None:intergenic | 30.0% |
TTGCCATTCAAGAATCATAA+TGG | - | chr2_3:51974512-51974531 | Msa0298030:intron | 30.0% | |
TTGCCATTATGATTCTTGAA+TGG | + | chr2_3:51974518-51974537 | None:intergenic | 30.0% | |
AATCATAATGGCAATGTTTC+AGG | - | chr2_3:51974524-51974543 | Msa0298030:intron | 30.0% | |
TGTTATTCAGTGACAACATT+TGG | + | chr2_3:51974652-51974671 | None:intergenic | 30.0% | |
TTGTCACTGAATAACAACTT+AGG | - | chr2_3:51974656-51974675 | Msa0298030:intron | 30.0% | |
TAATAGGAAGAGGATAATTG+AGG | - | chr2_3:51974736-51974755 | Msa0298030:intron | 30.0% | |
AATAGGAAGAGGATAATTGA+GGG | - | chr2_3:51974737-51974756 | Msa0298030:intron | 30.0% | |
CATAGAACTATAACAAAGAG+TGG | + | chr2_3:51974868-51974887 | None:intergenic | 30.0% | |
TATGATTCACATTAAGCTCA+AGG | - | chr2_3:51975014-51975033 | Msa0298030:CDS | 30.0% | |
AAGGAATTCATCCATGTTGA+GGG | + | chr2_3:51974198-51974217 | None:intergenic | 35.0% | |
ATTACCAAGTTGTTGGGAAA+CGG | + | chr2_3:51974297-51974316 | None:intergenic | 35.0% | |
! | TTTTCTTCCAAATTGGAGGA+GGG | + | chr2_3:51974331-51974350 | None:intergenic | 35.0% |
! | ACAGTTTTCTTCCAAATTGG+AGG | + | chr2_3:51974335-51974354 | None:intergenic | 35.0% |
TCCAATTTGGAAGAAAACTG+TGG | - | chr2_3:51974334-51974353 | Msa0298030:intron | 35.0% | |
! | TCCACAGTTTTCTTCCAAAT+TGG | + | chr2_3:51974338-51974357 | None:intergenic | 35.0% |
AGAAAACTGTGGATGAAGTT+TGG | - | chr2_3:51974345-51974364 | Msa0298030:intron | 35.0% | |
AACACTTGGAGAAATGAGTT+TGG | - | chr2_3:51974445-51974464 | Msa0298030:CDS | 35.0% | |
GAGGATTTCTTAGTAAAAGC+TGG | - | chr2_3:51974467-51974486 | Msa0298030:intron | 35.0% | |
TTGCAAGTTGTTATGGTTTG+AGG | - | chr2_3:51974567-51974586 | Msa0298030:intron | 35.0% | |
ACTCAATGTGTGTCTAGAAA+TGG | - | chr2_3:51974614-51974633 | Msa0298030:intron | 35.0% | |
GAATAACAACTTAGGAGTGA+AGG | - | chr2_3:51974664-51974683 | Msa0298030:intron | 35.0% | |
AAAGCTTGACTGAATCAAGT+GGG | - | chr2_3:51974708-51974727 | Msa0298030:intron | 35.0% | |
AATCAAGTGGGTGTAGTAAT+AGG | - | chr2_3:51974720-51974739 | Msa0298030:intron | 35.0% | |
TGTTAAGGCAACCTAAATTG+TGG | + | chr2_3:51975060-51975079 | None:intergenic | 35.0% | |
ATGTTAGCAACTAGTTACCA+AGG | + | chr2_3:51975115-51975134 | None:intergenic | 35.0% | |
CATTCAACAAAGGCTCAAAA+GGG | - | chr2_3:51975504-51975523 | Msa0298030:CDS | 35.0% | |
AAGGAATTCATCCATGTTGA+GGG | + | chr2_3:51974198-51974217 | None:intergenic | 35.0% | |
ATTACCAAGTTGTTGGGAAA+CGG | + | chr2_3:51974297-51974316 | None:intergenic | 35.0% | |
! | TTTTCTTCCAAATTGGAGGA+GGG | + | chr2_3:51974331-51974350 | None:intergenic | 35.0% |
! | ACAGTTTTCTTCCAAATTGG+AGG | + | chr2_3:51974335-51974354 | None:intergenic | 35.0% |
TCCAATTTGGAAGAAAACTG+TGG | - | chr2_3:51974334-51974353 | Msa0298030:intron | 35.0% | |
! | TCCACAGTTTTCTTCCAAAT+TGG | + | chr2_3:51974338-51974357 | None:intergenic | 35.0% |
AGAAAACTGTGGATGAAGTT+TGG | - | chr2_3:51974345-51974364 | Msa0298030:intron | 35.0% | |
AACACTTGGAGAAATGAGTT+TGG | - | chr2_3:51974445-51974464 | Msa0298030:CDS | 35.0% | |
GAGGATTTCTTAGTAAAAGC+TGG | - | chr2_3:51974467-51974486 | Msa0298030:intron | 35.0% | |
TTGCAAGTTGTTATGGTTTG+AGG | - | chr2_3:51974567-51974586 | Msa0298030:intron | 35.0% | |
ACTCAATGTGTGTCTAGAAA+TGG | - | chr2_3:51974614-51974633 | Msa0298030:intron | 35.0% | |
GAATAACAACTTAGGAGTGA+AGG | - | chr2_3:51974664-51974683 | Msa0298030:intron | 35.0% | |
AAAGCTTGACTGAATCAAGT+GGG | - | chr2_3:51974708-51974727 | Msa0298030:intron | 35.0% | |
AATCAAGTGGGTGTAGTAAT+AGG | - | chr2_3:51974720-51974739 | Msa0298030:intron | 35.0% | |
TGTTAAGGCAACCTAAATTG+TGG | + | chr2_3:51975060-51975079 | None:intergenic | 35.0% | |
ATGTTAGCAACTAGTTACCA+AGG | + | chr2_3:51975115-51975134 | None:intergenic | 35.0% | |
CATTCAACAAAGGCTCAAAA+GGG | - | chr2_3:51975504-51975523 | Msa0298030:CDS | 35.0% | |
CTTGCATTGGAACTCATCAA+GGG | + | chr2_3:51974156-51974175 | None:intergenic | 40.0% | |
TCTTGCATTGGAACTCATCA+AGG | + | chr2_3:51974157-51974176 | None:intergenic | 40.0% | |
CAAGGAATTCATCCATGTTG+AGG | + | chr2_3:51974199-51974218 | None:intergenic | 40.0% | |
ATGAATTCCTTGCCAGCATA+TGG | - | chr2_3:51974207-51974226 | Msa0298030:intron | 40.0% | |
GTCATTAGAACTCCATATGC+TGG | + | chr2_3:51974222-51974241 | None:intergenic | 40.0% | |
! | GTTTTCTTCCAAATTGGAGG+AGG | + | chr2_3:51974332-51974351 | None:intergenic | 40.0% |
! | TGAGTGTCTCGCTTCTTTTA+AGG | + | chr2_3:51974415-51974434 | None:intergenic | 40.0% |
CTCAAGAAGCAACAAACACT+TGG | - | chr2_3:51974431-51974450 | Msa0298030:CDS | 40.0% | |
ACTTGGAGAAATGAGTTTGG+AGG | - | chr2_3:51974448-51974467 | Msa0298030:intron | 40.0% | |
! | TTATGGTTTGAGGCCTTCAA+TGG | - | chr2_3:51974577-51974596 | Msa0298030:intron | 40.0% |
! | TATGGTTTGAGGCCTTCAAT+GGG | - | chr2_3:51974578-51974597 | Msa0298030:intron | 40.0% |
GAAAATCCCATTCCCATTGA+AGG | + | chr2_3:51974593-51974612 | None:intergenic | 40.0% | |
CAAAGCTTGACTGAATCAAG+TGG | - | chr2_3:51974707-51974726 | Msa0298030:intron | 40.0% | |
AAATTATGGTCGAATGCGAC+AGG | - | chr2_3:51974945-51974964 | Msa0298030:CDS | 40.0% | |
TACGTCTGTGACCACAATTT+AGG | - | chr2_3:51975046-51975065 | Msa0298030:CDS | 40.0% | |
TTGTACCAGACATGATATGG+CGG | + | chr2_3:51975091-51975110 | None:intergenic | 40.0% | |
GGTTTGTACCAGACATGATA+TGG | + | chr2_3:51975094-51975113 | None:intergenic | 40.0% | |
ATCATGTCTGGTACAAACCT+TGG | - | chr2_3:51975095-51975114 | Msa0298030:CDS | 40.0% | |
GGCATATACATTAGAGCTAG+AGG | - | chr2_3:51975164-51975183 | Msa0298030:CDS | 40.0% | |
! | ACTTACCTCTTGTTTCCTCT+TGG | + | chr2_3:51975368-51975387 | None:intergenic | 40.0% |
!! | GCAACGAAAGCATTCAACAA+AGG | - | chr2_3:51975494-51975513 | Msa0298030:CDS | 40.0% |
GCATTCAACAAAGGCTCAAA+AGG | - | chr2_3:51975503-51975522 | Msa0298030:CDS | 40.0% | |
CTTGCATTGGAACTCATCAA+GGG | + | chr2_3:51974156-51974175 | None:intergenic | 40.0% | |
TCTTGCATTGGAACTCATCA+AGG | + | chr2_3:51974157-51974176 | None:intergenic | 40.0% | |
CAAGGAATTCATCCATGTTG+AGG | + | chr2_3:51974199-51974218 | None:intergenic | 40.0% | |
ATGAATTCCTTGCCAGCATA+TGG | - | chr2_3:51974207-51974226 | Msa0298030:intron | 40.0% | |
GTCATTAGAACTCCATATGC+TGG | + | chr2_3:51974222-51974241 | None:intergenic | 40.0% | |
! | GTTTTCTTCCAAATTGGAGG+AGG | + | chr2_3:51974332-51974351 | None:intergenic | 40.0% |
! | TGAGTGTCTCGCTTCTTTTA+AGG | + | chr2_3:51974415-51974434 | None:intergenic | 40.0% |
CTCAAGAAGCAACAAACACT+TGG | - | chr2_3:51974431-51974450 | Msa0298030:CDS | 40.0% | |
ACTTGGAGAAATGAGTTTGG+AGG | - | chr2_3:51974448-51974467 | Msa0298030:intron | 40.0% | |
! | TTATGGTTTGAGGCCTTCAA+TGG | - | chr2_3:51974577-51974596 | Msa0298030:intron | 40.0% |
! | TATGGTTTGAGGCCTTCAAT+GGG | - | chr2_3:51974578-51974597 | Msa0298030:intron | 40.0% |
GAAAATCCCATTCCCATTGA+AGG | + | chr2_3:51974593-51974612 | None:intergenic | 40.0% | |
CAAAGCTTGACTGAATCAAG+TGG | - | chr2_3:51974707-51974726 | Msa0298030:intron | 40.0% | |
AAATTATGGTCGAATGCGAC+AGG | - | chr2_3:51974945-51974964 | Msa0298030:CDS | 40.0% | |
TACGTCTGTGACCACAATTT+AGG | - | chr2_3:51975046-51975065 | Msa0298030:CDS | 40.0% | |
TTGTACCAGACATGATATGG+CGG | + | chr2_3:51975091-51975110 | None:intergenic | 40.0% | |
GGTTTGTACCAGACATGATA+TGG | + | chr2_3:51975094-51975113 | None:intergenic | 40.0% | |
ATCATGTCTGGTACAAACCT+TGG | - | chr2_3:51975095-51975114 | Msa0298030:CDS | 40.0% | |
GGCATATACATTAGAGCTAG+AGG | - | chr2_3:51975164-51975183 | Msa0298030:CDS | 40.0% | |
! | ACTTACCTCTTGTTTCCTCT+TGG | + | chr2_3:51975368-51975387 | None:intergenic | 40.0% |
!! | GCAACGAAAGCATTCAACAA+AGG | - | chr2_3:51975494-51975513 | Msa0298030:CDS | 40.0% |
GCATTCAACAAAGGCTCAAA+AGG | - | chr2_3:51975503-51975522 | Msa0298030:CDS | 40.0% | |
GCTTCTGCTTGTTCTTGCAA+TGG | + | chr2_3:51974089-51974108 | None:intergenic | 45.0% | |
GATGAGTTCCAATGCAAGAG+TGG | - | chr2_3:51974158-51974177 | Msa0298030:intron | 45.0% | |
AGCTCTTTCCACTCTTGCAT+TGG | + | chr2_3:51974169-51974188 | None:intergenic | 45.0% | |
TGCAAGAGTGGAAAGAGCTT+TGG | - | chr2_3:51974170-51974189 | Msa0298030:intron | 45.0% | |
TAGAACTCCATATGCTGGCA+AGG | + | chr2_3:51974217-51974236 | None:intergenic | 45.0% | |
! | TTTGAGGCCTTCAATGGGAA+TGG | - | chr2_3:51974583-51974602 | Msa0298030:intron | 45.0% |
TTGAGGCCTTCAATGGGAAT+GGG | - | chr2_3:51974584-51974603 | Msa0298030:intron | 45.0% | |
GTGGGTGTAGTAATAGGAAG+AGG | - | chr2_3:51974726-51974745 | Msa0298030:intron | 45.0% | |
ATGGCGGTCAAATGCTGTTA+AGG | + | chr2_3:51975075-51975094 | None:intergenic | 45.0% | |
TTTGACCGCCATATCATGTC+TGG | - | chr2_3:51975083-51975102 | Msa0298030:CDS | 45.0% | |
TGAGACCAAGAGGAAACAAG+AGG | - | chr2_3:51975360-51975379 | Msa0298030:CDS | 45.0% | |
GCTTCTGCTTGTTCTTGCAA+TGG | + | chr2_3:51974089-51974108 | None:intergenic | 45.0% | |
GATGAGTTCCAATGCAAGAG+TGG | - | chr2_3:51974158-51974177 | Msa0298030:intron | 45.0% | |
AGCTCTTTCCACTCTTGCAT+TGG | + | chr2_3:51974169-51974188 | None:intergenic | 45.0% | |
TGCAAGAGTGGAAAGAGCTT+TGG | - | chr2_3:51974170-51974189 | Msa0298030:intron | 45.0% | |
TAGAACTCCATATGCTGGCA+AGG | + | chr2_3:51974217-51974236 | None:intergenic | 45.0% | |
! | TTTGAGGCCTTCAATGGGAA+TGG | - | chr2_3:51974583-51974602 | Msa0298030:intron | 45.0% |
TTGAGGCCTTCAATGGGAAT+GGG | - | chr2_3:51974584-51974603 | Msa0298030:intron | 45.0% | |
GTGGGTGTAGTAATAGGAAG+AGG | - | chr2_3:51974726-51974745 | Msa0298030:intron | 45.0% | |
ATGGCGGTCAAATGCTGTTA+AGG | + | chr2_3:51975075-51975094 | None:intergenic | 45.0% | |
TTTGACCGCCATATCATGTC+TGG | - | chr2_3:51975083-51975102 | Msa0298030:CDS | 45.0% | |
TGAGACCAAGAGGAAACAAG+AGG | - | chr2_3:51975360-51975379 | Msa0298030:CDS | 45.0% | |
! | GAGCTTTGGTTCCCTCAACA+TGG | - | chr2_3:51974184-51974203 | Msa0298030:intron | 50.0% |
CACACCGTTTCCCAACAACT+TGG | - | chr2_3:51974290-51974309 | Msa0298030:intron | 50.0% | |
TCTCTGTCCCTCCTCCAATT+TGG | - | chr2_3:51974321-51974340 | Msa0298030:intron | 50.0% | |
AGGAGTGAAGGAATGTGCTG+TGG | - | chr2_3:51974676-51974695 | Msa0298030:intron | 50.0% | |
CTTCGCTCCACTACAACATC+AGG | + | chr2_3:51974767-51974786 | None:intergenic | 50.0% | |
! | CTGATGTTGTAGTGGAGCGA+AGG | - | chr2_3:51974765-51974784 | Msa0298030:intron | 50.0% |
TCGTTCTCGAGCAAGAAGAC+AGG | - | chr2_3:51974823-51974842 | Msa0298030:CDS | 50.0% | |
AGTTGCAGTTACCTTCGCTG+TGG | - | chr2_3:51974898-51974917 | Msa0298030:CDS | 50.0% | |
GAATTGTGAAGCCACAGCGA+AGG | + | chr2_3:51974912-51974931 | None:intergenic | 50.0% | |
GAAGGCCTATAAGCACAACC+TGG | - | chr2_3:51975550-51975569 | Msa0298030:CDS | 50.0% | |
! | GAGCTTTGGTTCCCTCAACA+TGG | - | chr2_3:51974184-51974203 | Msa0298030:intron | 50.0% |
CACACCGTTTCCCAACAACT+TGG | - | chr2_3:51974290-51974309 | Msa0298030:intron | 50.0% | |
TCTCTGTCCCTCCTCCAATT+TGG | - | chr2_3:51974321-51974340 | Msa0298030:intron | 50.0% | |
AGGAGTGAAGGAATGTGCTG+TGG | - | chr2_3:51974676-51974695 | Msa0298030:intron | 50.0% | |
CTTCGCTCCACTACAACATC+AGG | + | chr2_3:51974767-51974786 | None:intergenic | 50.0% | |
! | CTGATGTTGTAGTGGAGCGA+AGG | - | chr2_3:51974765-51974784 | Msa0298030:intron | 50.0% |
TCGTTCTCGAGCAAGAAGAC+AGG | - | chr2_3:51974823-51974842 | Msa0298030:CDS | 50.0% | |
AGTTGCAGTTACCTTCGCTG+TGG | - | chr2_3:51974898-51974917 | Msa0298030:CDS | 50.0% | |
GAATTGTGAAGCCACAGCGA+AGG | + | chr2_3:51974912-51974931 | None:intergenic | 50.0% | |
GAAGGCCTATAAGCACAACC+TGG | - | chr2_3:51975550-51975569 | Msa0298030:CDS | 50.0% | |
GGGTCCTCCTGATGTTGTAG+TGG | - | chr2_3:51974757-51974776 | Msa0298030:intron | 55.0% | |
CGCTCCACTACAACATCAGG+AGG | + | chr2_3:51974764-51974783 | None:intergenic | 55.0% | |
GACAGGTTCAGCCTCGATCA+CGG | - | chr2_3:51974962-51974981 | Msa0298030:CDS | 55.0% | |
AAGGTCTGTGACCGTGATCG+AGG | + | chr2_3:51974976-51974995 | None:intergenic | 55.0% | |
AGGCTGAAGCTGAGACCAAG+AGG | - | chr2_3:51975350-51975369 | Msa0298030:CDS | 55.0% | |
GGGTCCTCCTGATGTTGTAG+TGG | - | chr2_3:51974757-51974776 | Msa0298030:intron | 55.0% | |
CGCTCCACTACAACATCAGG+AGG | + | chr2_3:51974764-51974783 | None:intergenic | 55.0% | |
GACAGGTTCAGCCTCGATCA+CGG | - | chr2_3:51974962-51974981 | Msa0298030:CDS | 55.0% | |
AAGGTCTGTGACCGTGATCG+AGG | + | chr2_3:51974976-51974995 | None:intergenic | 55.0% | |
AGGCTGAAGCTGAGACCAAG+AGG | - | chr2_3:51975350-51975369 | Msa0298030:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 51974056 | 51975575 | 51974056 | ID=Msa0298030;Name=Msa0298030 |
chr2_3 | mRNA | 51974056 | 51975575 | 51974056 | ID=Msa0298030-mRNA-1;Parent=Msa0298030;Name=Msa0298030-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|4|0|325 |
chr2_3 | exon | 51974787 | 51975575 | 51974787 | ID=Msa0298030-mRNA-1:exon:16555;Parent=Msa0298030-mRNA-1 |
chr2_3 | exon | 51974395 | 51974466 | 51974395 | ID=Msa0298030-mRNA-1:exon:16554;Parent=Msa0298030-mRNA-1 |
chr2_3 | exon | 51974250 | 51974279 | 51974250 | ID=Msa0298030-mRNA-1:exon:16553;Parent=Msa0298030-mRNA-1 |
chr2_3 | exon | 51974056 | 51974142 | 51974056 | ID=Msa0298030-mRNA-1:exon:16552;Parent=Msa0298030-mRNA-1 |
chr2_3 | CDS | 51974787 | 51975575 | 51974787 | ID=Msa0298030-mRNA-1:cds;Parent=Msa0298030-mRNA-1 |
chr2_3 | CDS | 51974395 | 51974466 | 51974395 | ID=Msa0298030-mRNA-1:cds;Parent=Msa0298030-mRNA-1 |
chr2_3 | CDS | 51974250 | 51974279 | 51974250 | ID=Msa0298030-mRNA-1:cds;Parent=Msa0298030-mRNA-1 |
chr2_3 | CDS | 51974056 | 51974142 | 51974056 | ID=Msa0298030-mRNA-1:cds;Parent=Msa0298030-mRNA-1 |
Gene Sequence |
Protein sequence |